Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90588.t1 | XP_003600111.1 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 4.90E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90588.t1 | Q946Y7 | 67.4 | 227 | 72 | 2 | 1 | 225 | 1 | 227 | 1.2e-76 | 287.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90588.t1 | G7IY20 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 3.5e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77217 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene69311 | PPI |
| MS.gene90588 | MS.gene81965 | PPI |
| MS.gene90588 | MS.gene02663 | PPI |
| MS.gene90588 | MS.gene056096 | PPI |
| MS.gene90588 | MS.gene78212 | PPI |
| MS.gene40807 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene77217 | PPI |
| MS.gene65117 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene063476 | PPI |
| MS.gene013657 | MS.gene90588 | PPI |
| MS.gene056094 | MS.gene90588 | PPI |
| MS.gene66057 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene005292 | PPI |
| MS.gene033077 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene052932 | PPI |
| MS.gene90588 | MS.gene072972 | PPI |
| MS.gene90588 | MS.gene44168 | PPI |
| MS.gene44169 | MS.gene90588 | PPI |
| MS.gene90588 | MS.gene044431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90588.t1 | MTR_3g052210 | 97.119 | 243 | 7 | 0 | 1 | 243 | 1 | 243 | 6.87e-178 | 488 |
| MS.gene90588.t1 | MTR_5g092870 | 77.966 | 236 | 48 | 2 | 1 | 232 | 1 | 236 | 4.07e-134 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90588.t1 | AT1G28490 | 67.755 | 245 | 77 | 2 | 1 | 243 | 1 | 245 | 3.69e-116 | 332 |
| MS.gene90588.t1 | AT1G28490 | 70.000 | 190 | 56 | 1 | 55 | 243 | 11 | 200 | 1.04e-89 | 263 |
| MS.gene90588.t1 | AT1G28490 | 68.159 | 201 | 58 | 2 | 44 | 243 | 11 | 206 | 2.29e-89 | 263 |
Find 50 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACGAAGGAGGTTCTTTC+TGG | 0.134337 | 3.4:-49152010 | MS.gene90588:CDS |
| TCTAGTACAACAAGCATTAA+TGG | 0.260115 | 3.4:-49150757 | MS.gene90588:CDS |
| ACTTACAGATTCTTGAATTT+CGG | 0.301091 | 3.4:+49153031 | None:intergenic |
| CATTATCATTGGCAGCATTC+TGG | 0.303561 | 3.4:+49150680 | None:intergenic |
| TTGCTGCCAGAGAACCTTCT+TGG | 0.313236 | 3.4:-49151025 | MS.gene90588:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.324293 | 3.4:-49151063 | MS.gene90588:intron |
| AATGAAATCATCATTATCAT+TGG | 0.404484 | 3.4:+49150669 | None:intergenic |
| CTAGTACAACAAGCATTAAT+GGG | 0.413684 | 3.4:-49150756 | MS.gene90588:CDS |
| CATGATGATACTGGCCTTGT+TGG | 0.423247 | 3.4:-49149577 | MS.gene90588:CDS |
| GGGCCAGATCATGATGATAC+TGG | 0.433608 | 3.4:-49149586 | MS.gene90588:CDS |
| GTTGGATGCATAAGGTTGAT+AGG | 0.437167 | 3.4:+49150702 | None:intergenic |
| CCGGTAGCCTCATTAGTTCT+CGG | 0.445818 | 3.4:+49150728 | None:intergenic |
| GCATTCTGGTTGGATGCATA+AGG | 0.451104 | 3.4:+49150694 | None:intergenic |
| TCGGATTTGACAACGTAGAA+AGG | 0.467631 | 3.4:+49153050 | None:intergenic |
| GACAAGCAGTGCTCGTACTC+AGG | 0.468891 | 3.4:-49150961 | MS.gene90588:intron |
| GCCAAGGAGTTCTTCATGTA+TGG | 0.471199 | 3.4:+49150067 | None:intergenic |
| CTCAAATTCAAACCTGGCCA+AGG | 0.481619 | 3.4:+49150051 | None:intergenic |
| GCCATACCAAGAAGGTTCTC+TGG | 0.485751 | 3.4:+49151019 | None:intergenic |
| TATTTGGGCTGATAGGCAAC+AGG | 0.487675 | 3.4:-49150147 | MS.gene90588:intron |
| ACAAAACATGCCCTCAGCTC+AGG | 0.499980 | 3.4:-49153075 | None:intergenic |
| ATGAAGAAAACAGTGGATGC+TGG | 0.500370 | 3.4:-49150787 | MS.gene90588:CDS |
| AGTTTAAGCGTACAAAGAAT+CGG | 0.501912 | 3.4:-49150104 | MS.gene90588:CDS |
| GGCTGATAGGCAACAGGATG+AGG | 0.505234 | 3.4:-49150141 | MS.gene90588:intron |
| AGATTGAAAATCGGAGGAGA+TGG | 0.505923 | 3.4:-49150983 | MS.gene90588:CDS |
| ACAGTAACATTGACTAGGTA+AGG | 0.514747 | 3.4:+49149523 | None:intergenic |
| ACATGAAGAACTCCTTGGCC+AGG | 0.518816 | 3.4:-49150063 | MS.gene90588:intron |
| GCCAGAGAACCTTCTTGGTA+TGG | 0.522757 | 3.4:-49151020 | MS.gene90588:CDS |
| GCATAAGGTTGATAGGAATC+CGG | 0.527293 | 3.4:+49150709 | None:intergenic |
| AGGCCAGTATCATCATGATC+TGG | 0.529006 | 3.4:+49149583 | None:intergenic |
| ATGTGAAAGCGTAGAATGGC+AGG | 0.533008 | 3.4:-49151987 | MS.gene90588:intron |
| ATGATGCTGAGATTGAAAAT+CGG | 0.537272 | 3.4:-49150992 | MS.gene90588:CDS |
| CTGGATGTGAAAGCGTAGAA+TGG | 0.546832 | 3.4:-49151991 | MS.gene90588:CDS |
| ATCATTGGCAGCATTCTGGT+TGG | 0.560569 | 3.4:+49150684 | None:intergenic |
| GAAAAGATTATAGATGAACT+TGG | 0.564446 | 3.4:-49149907 | MS.gene90588:CDS |
| GTACAAAGAATCGGAGGCGT+TGG | 0.564486 | 3.4:-49150095 | MS.gene90588:CDS |
| GAAAATGAACAAGGCCAACA+AGG | 0.572030 | 3.4:+49149563 | None:intergenic |
| ACCATACATGAAGAACTCCT+TGG | 0.572624 | 3.4:-49150068 | MS.gene90588:CDS |
| CCGAGAACTAATGAGGCTAC+CGG | 0.587919 | 3.4:-49150728 | MS.gene90588:CDS |
| GGATGCACCGAGAACTAATG+AGG | 0.594871 | 3.4:-49150735 | MS.gene90588:CDS |
| ATGAAGAAAGCTAGTGCGAA+GGG | 0.599205 | 3.4:-49149606 | MS.gene90588:CDS |
| AGATGAACTTGGTAACGAGA+TGG | 0.600755 | 3.4:-49149896 | MS.gene90588:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.603070 | 3.4:+49151011 | None:intergenic |
| TAGAAAGGATCCTGAGCTGA+GGG | 0.604695 | 3.4:+49153065 | None:intergenic |
| TATGAAGAAAGCTAGTGCGA+AGG | 0.624609 | 3.4:-49149607 | MS.gene90588:CDS |
| GAAAGTACGTGTTACGAAGG+AGG | 0.625731 | 3.4:-49152020 | MS.gene90588:CDS |
| ATGCTGAGATTGAAAATCGG+AGG | 0.637923 | 3.4:-49150989 | MS.gene90588:CDS |
| GTAGAAAGGATCCTGAGCTG+AGG | 0.654695 | 3.4:+49153064 | None:intergenic |
| TGGCACAATGAAGAAAACAG+TGG | 0.692931 | 3.4:-49150794 | MS.gene90588:CDS |
| AGAGAAAGTACGTGTTACGA+AGG | 0.698114 | 3.4:-49152023 | MS.gene90588:CDS |
| TTAAGCGTACAAAGAATCGG+AGG | 0.705397 | 3.4:-49150101 | MS.gene90588:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAACCAAAAAATT+AGG | + | chr3.4:49150066-49150085 | None:intergenic | 10.0% |
| !! | AACTAAAATATTAAACAAAA+AGG | + | chr3.4:49152420-49152439 | None:intergenic | 10.0% |
| !! | AATAAATAACCAAAAAATTA+GGG | + | chr3.4:49150065-49150084 | None:intergenic | 10.0% |
| !! | ACTAAAATATTAAACAAAAA+GGG | + | chr3.4:49152419-49152438 | None:intergenic | 10.0% |
| !!! | GATTTATTTTATATCTATTT+GGG | - | chr3.4:49152442-49152461 | MS.gene90588:intron | 10.0% |
| !!! | TGATTTATTTTATATCTATT+TGG | - | chr3.4:49152441-49152460 | MS.gene90588:intron | 10.0% |
| !!! | TTTTATTCAATTTTATTTGA+TGG | - | chr3.4:49149748-49149767 | MS.gene90588:intron | 10.0% |
| !! | AAATACAATACGAAAATTTA+GGG | - | chr3.4:49150360-49150379 | MS.gene90588:intron | 15.0% |
| !! | AAATACAGTATGAAAATTTA+GGG | - | chr3.4:49150211-49150230 | MS.gene90588:intron | 15.0% |
| !! | ATAAATAACCAAAAAATTAG+GGG | + | chr3.4:49150064-49150083 | None:intergenic | 15.0% |
| !! | TAAAAAACATGAAAATACAA+TGG | - | chr3.4:49152339-49152358 | MS.gene90588:intron | 15.0% |
| !!! | AAGCTTTAAAATAACTTAAA+AGG | + | chr3.4:49150799-49150818 | None:intergenic | 15.0% |
| !!! | AGCTTTAAAATAACTTAAAA+GGG | + | chr3.4:49150798-49150817 | None:intergenic | 15.0% |
| !!! | ATTTATTTGATTATGCTTTT+TGG | - | chr3.4:49150078-49150097 | MS.gene90588:CDS | 15.0% |
| !!! | TTTTCATGTTTTTTACATTA+TGG | + | chr3.4:49152334-49152353 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTAAAATTGTTTT+GGG | - | chr3.4:49150234-49150253 | MS.gene90588:intron | 15.0% |
| !! | AAAATAAACCCTATGTAATT+TGG | + | chr3.4:49149623-49149642 | None:intergenic | 20.0% |
| !! | AAATAAACCCTATGTAATTT+GGG | + | chr3.4:49149622-49149641 | None:intergenic | 20.0% |
| !! | AAATGCAATGTGAAAATTTA+GGG | - | chr3.4:49149947-49149966 | MS.gene90588:intron | 20.0% |
| !! | AATACAATACGAAAATTTAG+GGG | - | chr3.4:49150361-49150380 | MS.gene90588:intron | 20.0% |
| !! | AATAGTTTAGAAATTTGTCT+GGG | - | chr3.4:49152364-49152383 | MS.gene90588:intron | 20.0% |
| !! | AATGAAATCATCATTATCAT+TGG | + | chr3.4:49151938-49151957 | None:intergenic | 20.0% |
| !! | AGTTGAAATTGAATGTAAAA+TGG | - | chr3.4:49150388-49150407 | MS.gene90588:intron | 20.0% |
| !! | ATTACATATTAAGTGTTATG+AGG | + | chr3.4:49149678-49149697 | None:intergenic | 20.0% |
| !! | CAATGTTTAATTGATAAGAT+TGG | - | chr3.4:49150432-49150451 | MS.gene90588:intron | 20.0% |
| !! | GAAATACAATACGAAAATTT+AGG | - | chr3.4:49150359-49150378 | MS.gene90588:intron | 20.0% |
| !! | GAAATACAGTATGAAAATTT+AGG | - | chr3.4:49150210-49150229 | MS.gene90588:intron | 20.0% |
| !! | GATTAATAACCAAAGAAATT+AGG | + | chr3.4:49149800-49149819 | None:intergenic | 20.0% |
| !! | GGTATTAAGAATAATAAACT+CGG | + | chr3.4:49150893-49150912 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAATGTAAAAT+GGG | - | chr3.4:49150389-49150408 | MS.gene90588:intron | 20.0% |
| !! | TAAATAACCAAAAAATTAGG+GGG | + | chr3.4:49150063-49150082 | None:intergenic | 20.0% |
| !! | TAAATGCAATGTGAAAATTT+AGG | - | chr3.4:49149946-49149965 | MS.gene90588:intron | 20.0% |
| !! | TGCTAAAAATCCAAAATTTA+TGG | + | chr3.4:49149840-49149859 | None:intergenic | 20.0% |
| !! | TGGAATCAGAAATAAATATA+AGG | - | chr3.4:49152295-49152314 | MS.gene90588:intron | 20.0% |
| !! | TTACATATTAAGTGTTATGA+GGG | + | chr3.4:49149677-49149696 | None:intergenic | 20.0% |
| !!! | AATTGATTTCCTAATTTCTT+TGG | - | chr3.4:49149788-49149807 | MS.gene90588:intron | 20.0% |
| !!! | AGTATTTTGTTTTGATAGAA+AGG | - | chr3.4:49151529-49151548 | MS.gene90588:intron | 20.0% |
| !!! | ATTTTAAAGCTTACTTTTCT+AGG | - | chr3.4:49150807-49150826 | MS.gene90588:intron | 20.0% |
| !!! | GATTTTTATTCACATTTGTT+TGG | - | chr3.4:49151181-49151200 | MS.gene90588:intron | 20.0% |
| !!! | GTTTTGAGTTAAAATTGTTT+TGG | - | chr3.4:49150233-49150252 | MS.gene90588:intron | 20.0% |
| !!! | TGATGGTTTTATTAGTATTT+GGG | - | chr3.4:49149765-49149784 | MS.gene90588:intron | 20.0% |
| !!! | TTGATGGTTTTATTAGTATT+TGG | - | chr3.4:49149764-49149783 | MS.gene90588:intron | 20.0% |
| !!! | TTTCACATTGCATTTATTTT+CGG | + | chr3.4:49149942-49149961 | None:intergenic | 20.0% |
| ! | AAACAAAATACTTCAGCATT+TGG | + | chr3.4:49151521-49151540 | None:intergenic | 25.0% |
| ! | AATAAACCCTATGTAATTTG+GGG | + | chr3.4:49149621-49149640 | None:intergenic | 25.0% |
| ! | ACTCATATAATCTTGTAAAG+AGG | - | chr3.4:49152927-49152946 | MS.gene90588:intron | 25.0% |
| ! | ACTTACAGATTCTTGAATTT+CGG | + | chr3.4:49149576-49149595 | None:intergenic | 25.0% |
| ! | AGATTACTGTTGTGAAATAA+TGG | - | chr3.4:49152866-49152885 | MS.gene90588:intron | 25.0% |
| ! | ATTAAAACTCATAACTGAGA+TGG | - | chr3.4:49152248-49152267 | MS.gene90588:intron | 25.0% |
| ! | ATTATTCTTAATACCACTGT+TGG | - | chr3.4:49150898-49150917 | MS.gene90588:intron | 25.0% |
| ! | ATTCCATAACGAAAGAAAAA+AGG | + | chr3.4:49152281-49152300 | None:intergenic | 25.0% |
| ! | CAAAATTTATGGACCAAAAA+CGG | + | chr3.4:49149829-49149848 | None:intergenic | 25.0% |
| ! | CAATAGTTTAGAAATTTGTC+TGG | - | chr3.4:49152363-49152382 | MS.gene90588:intron | 25.0% |
| ! | CAATGAATTGGAAAAGAAAA+TGG | + | chr3.4:49151709-49151728 | None:intergenic | 25.0% |
| ! | GAAAAATAGGAAAATGAACA+AGG | + | chr3.4:49153053-49153072 | None:intergenic | 25.0% |
| ! | GAAAAGATTATAGATGAACT+TGG | - | chr3.4:49152697-49152716 | MS.gene90588:intron | 25.0% |
| ! | TAAGGAAGACTAAGAAAAAT+AGG | + | chr3.4:49153066-49153085 | None:intergenic | 25.0% |
| ! | TACATATTAAGTGTTATGAG+GGG | + | chr3.4:49149676-49149695 | None:intergenic | 25.0% |
| ! | TAGATGTGTTAAATAGTCAA+GGG | + | chr3.4:49151021-49151040 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAATGAAAACT+AGG | + | chr3.4:49152779-49152798 | None:intergenic | 25.0% |
| ! | TGACAAAGACAAAATTACAA+AGG | + | chr3.4:49152636-49152655 | None:intergenic | 25.0% |
| ! | TTAGATGTGTTAAATAGTCA+AGG | + | chr3.4:49151022-49151041 | None:intergenic | 25.0% |
| ! | TTATTCTTAATACCACTGTT+GGG | - | chr3.4:49150899-49150918 | MS.gene90588:intron | 25.0% |
| ! | TTTAAATTATATCCCAACAG+TGG | + | chr3.4:49150914-49150933 | None:intergenic | 25.0% |
| !! | ATTAATCCAATTACCGTTTT+TGG | - | chr3.4:49149813-49149832 | MS.gene90588:intron | 25.0% |
| !! | CATCTTTCTTTTCTTTACTT+TGG | - | chr3.4:49152037-49152056 | MS.gene90588:CDS | 25.0% |
| !! | GCTAATATTTAGTTCATGTT+TGG | - | chr3.4:49152208-49152227 | MS.gene90588:intron | 25.0% |
| !! | TAATTGATAAGATTGGTTCT+TGG | - | chr3.4:49150439-49150458 | MS.gene90588:intron | 25.0% |
| !! | TTTCTAGGTTCATCTAATTT+TGG | - | chr3.4:49150822-49150841 | MS.gene90588:intron | 25.0% |
| !! | TTTTACATTATGGTTACGTA+AGG | + | chr3.4:49152324-49152343 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGATAGAAAGG+TGG | - | chr3.4:49151532-49151551 | MS.gene90588:intron | 25.0% |
| !!! | TTTCCTTTTTTCTTTCGTTA+TGG | - | chr3.4:49152275-49152294 | MS.gene90588:intron | 25.0% |
| !!! | TTTTTTCCCCAAATTACATA+GGG | - | chr3.4:49149612-49149631 | MS.gene90588:CDS | 25.0% |
| !!! | TTTTTTTCCCCAAATTACAT+AGG | - | chr3.4:49149611-49149630 | MS.gene90588:CDS | 25.0% |
| ACAACTACTACACAATGAAT+TGG | + | chr3.4:49151721-49151740 | None:intergenic | 30.0% | |
| ACACATCTAAGTATAACTCA+AGG | - | chr3.4:49151032-49151051 | MS.gene90588:CDS | 30.0% | |
| ACATATTAAGTGTTATGAGG+GGG | + | chr3.4:49149675-49149694 | None:intergenic | 30.0% | |
| AGATGTGTTAAATAGTCAAG+GGG | + | chr3.4:49151020-49151039 | None:intergenic | 30.0% | |
| AGTTTAAGCGTACAAAGAAT+CGG | - | chr3.4:49152500-49152519 | MS.gene90588:intron | 30.0% | |
| ATGATGCTGAGATTGAAAAT+CGG | - | chr3.4:49151612-49151631 | MS.gene90588:intron | 30.0% | |
| ATTAGACAAGCTTAATGCTA+CGG | + | chr3.4:49151330-49151349 | None:intergenic | 30.0% | |
| CAAAATCATACATCACAACT+GGG | + | chr3.4:49150305-49150324 | None:intergenic | 30.0% | |
| CAAATTCACAGATCTCAATT+GGG | + | chr3.4:49150131-49150150 | None:intergenic | 30.0% | |
| CTAGTACAACAAGCATTAAT+GGG | - | chr3.4:49151848-49151867 | MS.gene90588:intron | 30.0% | |
| CTCTCTAAATCTTATGTAAC+TGG | - | chr3.4:49152008-49152027 | MS.gene90588:CDS | 30.0% | |
| CTTGAAAATGCTGTGAATTT+AGG | - | chr3.4:49149699-49149718 | MS.gene90588:intron | 30.0% | |
| TACATAAGATTTAGAGAGAG+AGG | + | chr3.4:49152006-49152025 | None:intergenic | 30.0% | |
| TATGTAGAGTCGTTGAAAAA+TGG | - | chr3.4:49150657-49150676 | MS.gene90588:CDS | 30.0% | |
| TCAAAATCATACATCACAAC+TGG | + | chr3.4:49150306-49150325 | None:intergenic | 30.0% | |
| TCAAATTCACAGATCTCAAT+TGG | + | chr3.4:49150132-49150151 | None:intergenic | 30.0% | |
| TCAAATTTATGCACCAAGAA+TGG | + | chr3.4:49150268-49150287 | None:intergenic | 30.0% | |
| TCAGCATTTGGTTATAGATT+AGG | + | chr3.4:49151509-49151528 | None:intergenic | 30.0% | |
| TCTAAGTATAACTCAAGGAT+AGG | - | chr3.4:49151037-49151056 | MS.gene90588:CDS | 30.0% | |
| TCTAGTACAACAAGCATTAA+TGG | - | chr3.4:49151847-49151866 | MS.gene90588:intron | 30.0% | |
| TGATTCCTTTCTTGCTTAAT+AGG | - | chr3.4:49151786-49151805 | MS.gene90588:intron | 30.0% | |
| TGTCAAAATCTTATTGCTTC+AGG | - | chr3.4:49152675-49152694 | MS.gene90588:intron | 30.0% | |
| TTATATCTATTTGGGCTGAT+AGG | - | chr3.4:49152450-49152469 | MS.gene90588:intron | 30.0% | |
| ! | AGACAAAATTACAAAGGCAT+AGG | + | chr3.4:49152630-49152649 | None:intergenic | 30.0% |
| ! | AGATTTTCCCCCTAATTTTT+TGG | - | chr3.4:49150053-49150072 | MS.gene90588:intron | 30.0% |
| ! | AGCAAAAGTCACTTTAAATG+AGG | + | chr3.4:49152072-49152091 | None:intergenic | 30.0% |
| ! | ATTTTGCTTGCAGAAAAAAG+TGG | - | chr3.4:49152967-49152986 | MS.gene90588:intron | 30.0% |
| ! | TTTAACCAGATTACGCTTTT+TGG | - | chr3.4:49149995-49150014 | MS.gene90588:intron | 30.0% |
| !! | AATGTATGCCCAATTTTAGT+TGG | - | chr3.4:49151673-49151692 | MS.gene90588:intron | 30.0% |
| !! | GCTTTTTGGTGCATAAATTT+GGG | - | chr3.4:49150009-49150028 | MS.gene90588:intron | 30.0% |
| !!! | ATGTATGCCCAATTTTAGTT+GGG | - | chr3.4:49151674-49151693 | MS.gene90588:intron | 30.0% |
| !!! | CGTTTTTGGTCCATAAATTT+TGG | - | chr3.4:49149827-49149846 | MS.gene90588:intron | 30.0% |
| !!! | GAGTTCATTATTGGTTTTGT+AGG | - | chr3.4:49150468-49150487 | MS.gene90588:intron | 30.0% |
| AAAGAGTGAAGAGTTGAGAA+TGG | - | chr3.4:49151205-49151224 | MS.gene90588:intron | 35.0% | |
| AAAGCTCTCAAATTCAAACC+TGG | + | chr3.4:49152562-49152581 | None:intergenic | 35.0% | |
| CCAATTCACAGGTTTCAATT+GGG | + | chr3.4:49149866-49149885 | None:intergenic | 35.0% | |
| GATTTGGATAGGAAAGCAAA+GGG | + | chr3.4:49151085-49151104 | None:intergenic | 35.0% | |
| GCATCTTCCCAACTAAAATT+GGG | + | chr3.4:49151684-49151703 | None:intergenic | 35.0% | |
| TATGGACCAAAAACGGTAAT+TGG | + | chr3.4:49149822-49149841 | None:intergenic | 35.0% | |
| TCCAATTCACAGGTTTCAAT+TGG | + | chr3.4:49149867-49149886 | None:intergenic | 35.0% | |
| TCCTTTCTTGCTTAATAGGT+TGG | - | chr3.4:49151790-49151809 | MS.gene90588:intron | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | - | chr3.4:49151541-49151560 | MS.gene90588:intron | 35.0% | |
| TGCATCTTCCCAACTAAAAT+TGG | + | chr3.4:49151685-49151704 | None:intergenic | 35.0% | |
| TGTGTAATGAATGTAGCCTA+AGG | + | chr3.4:49151423-49151442 | None:intergenic | 35.0% | |
| TGTTAAATAGTCAAGGGGAA+GGG | + | chr3.4:49151015-49151034 | None:intergenic | 35.0% | |
| ! | ACTTTTGGATGGTTTCTGTT+GGG | - | chr3.4:49150747-49150766 | MS.gene90588:CDS | 35.0% |
| ! | TGATAAGATTGGTTCTTGGT+GGG | - | chr3.4:49150443-49150462 | MS.gene90588:intron | 35.0% |
| ! | TTCATATTTTACAGCTTCCC+CGG | + | chr3.4:49151132-49151151 | None:intergenic | 35.0% |
| ! | TTGATAAGATTGGTTCTTGG+TGG | - | chr3.4:49150442-49150461 | MS.gene90588:intron | 35.0% |
| ! | TTGGGATTTGAAACCATTCT+TGG | - | chr3.4:49150252-49150271 | MS.gene90588:intron | 35.0% |
| !! | CGCTTTTTGGTGCATAAATT+TGG | - | chr3.4:49150008-49150027 | MS.gene90588:intron | 35.0% |
| !! | GCTTTTTGGTGCATAAAGTT+GGG | - | chr3.4:49150092-49150111 | MS.gene90588:CDS | 35.0% |
| !! | TGCAATCTACTTTTGAGCAA+TGG | - | chr3.4:49150538-49150557 | MS.gene90588:intron | 35.0% |
| !! | TGCTTTTTGGTGCATAAAGT+TGG | - | chr3.4:49150091-49150110 | MS.gene90588:CDS | 35.0% |
| ACCATACATGAAGAACTCCT+TGG | - | chr3.4:49152536-49152555 | MS.gene90588:intron | 40.0% | |
| ACTAGGTGAAGAAACTCACT+TGG | + | chr3.4:49152762-49152781 | None:intergenic | 40.0% | |
| AGATTGAAAATCGGAGGAGA+TGG | - | chr3.4:49151621-49151640 | MS.gene90588:intron | 40.0% | |
| ATGAAGAAAACAGTGGATGC+TGG | - | chr3.4:49151817-49151836 | MS.gene90588:intron | 40.0% | |
| ATGAAGAAAGCTAGTGCGAA+GGG | - | chr3.4:49152998-49153017 | MS.gene90588:intron | 40.0% | |
| ATGCTGAGATTGAAAATCGG+AGG | - | chr3.4:49151615-49151634 | MS.gene90588:intron | 40.0% | |
| ATTAGTCACACATGCAGACA+CGG | + | chr3.4:49152113-49152132 | None:intergenic | 40.0% | |
| ATTCCATTCTTCGTCCTTCT+CGG | - | chr3.4:49151468-49151487 | MS.gene90588:intron | 40.0% | |
| CACAGAATTAAAGACCGAGA+AGG | + | chr3.4:49151485-49151504 | None:intergenic | 40.0% | |
| CATTATCATTGGCAGCATTC+TGG | + | chr3.4:49151927-49151946 | None:intergenic | 40.0% | |
| CCCAATTGAAACCTGTGAAT+TGG | - | chr3.4:49149863-49149882 | MS.gene90588:intron | 40.0% | |
| CTACACAAGTCCCAAAAATG+CGG | - | chr3.4:49151258-49151277 | MS.gene90588:intron | 40.0% | |
| CTGGGCATACTTATGATTTC+TGG | - | chr3.4:49152382-49152401 | MS.gene90588:intron | 40.0% | |
| CTTCTCGGTCTTTAATTCTG+TGG | - | chr3.4:49151483-49151502 | MS.gene90588:intron | 40.0% | |
| CTTGCAGAAAAAAGTGGCAA+TGG | - | chr3.4:49152973-49152992 | MS.gene90588:intron | 40.0% | |
| GAAAATGAACAAGGCCAACA+AGG | + | chr3.4:49153044-49153063 | None:intergenic | 40.0% | |
| GCCAACCTATTAAGCAAGAA+AGG | + | chr3.4:49151794-49151813 | None:intergenic | 40.0% | |
| GGATTTGGATAGGAAAGCAA+AGG | + | chr3.4:49151086-49151105 | None:intergenic | 40.0% | |
| GTAATGAATGTAGCCTAAGG+TGG | + | chr3.4:49151420-49151439 | None:intergenic | 40.0% | |
| GTGTTAAATAGTCAAGGGGA+AGG | + | chr3.4:49151016-49151035 | None:intergenic | 40.0% | |
| GTTAAATAGTCAAGGGGAAG+GGG | + | chr3.4:49151014-49151033 | None:intergenic | 40.0% | |
| TACACAAGTCCCAAAAATGC+GGG | - | chr3.4:49151259-49151278 | MS.gene90588:intron | 40.0% | |
| TATGAAGAAAGCTAGTGCGA+AGG | - | chr3.4:49152997-49153016 | MS.gene90588:intron | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | + | chr3.4:49151596-49151615 | None:intergenic | 40.0% | |
| TCGGATTTGACAACGTAGAA+AGG | + | chr3.4:49149557-49149576 | None:intergenic | 40.0% | |
| TGGCACAATGAAGAAAACAG+TGG | - | chr3.4:49151810-49151829 | MS.gene90588:intron | 40.0% | |
| TTAAGCGTACAAAGAATCGG+AGG | - | chr3.4:49152503-49152522 | MS.gene90588:intron | 40.0% | |
| TTGCTTTCCTATCCAAATCC+TGG | - | chr3.4:49151086-49151105 | MS.gene90588:intron | 40.0% | |
| ! | AGAGAAAGTACGTGTTACGA+AGG | - | chr3.4:49150581-49150600 | MS.gene90588:intron | 40.0% |
| ! | ATGCACCAAAAAGCGTAATC+TGG | + | chr3.4:49150003-49150022 | None:intergenic | 40.0% |
| ! | GACTTTTGGATGGTTTCTGT+TGG | - | chr3.4:49150746-49150765 | MS.gene90588:CDS | 40.0% |
| ! | GTTGGATGCATAAGGTTGAT+AGG | + | chr3.4:49151905-49151924 | None:intergenic | 40.0% |
| !! | AGATGAACTTGGTAACGAGA+TGG | - | chr3.4:49152708-49152727 | MS.gene90588:intron | 40.0% |
| !! | GCATAAGGTTGATAGGAATC+CGG | + | chr3.4:49151898-49151917 | None:intergenic | 40.0% |
| !!! | TTTGCATGAGCACTGACTTT+TGG | - | chr3.4:49150732-49150751 | MS.gene90588:CDS | 40.0% |
| AGGCCAGTATCATCATGATC+TGG | + | chr3.4:49153024-49153043 | None:intergenic | 45.0% | |
| ATAGGAAAGCAAAGGGCAAG+AGG | + | chr3.4:49151078-49151097 | None:intergenic | 45.0% | |
| ATCATTGGCAGCATTCTGGT+TGG | + | chr3.4:49151923-49151942 | None:intergenic | 45.0% | |
| CCTAAGGTGGAAAACAGAGT+AGG | + | chr3.4:49151407-49151426 | None:intergenic | 45.0% | |
| CTCAAATTCAAACCTGGCCA+AGG | + | chr3.4:49152556-49152575 | None:intergenic | 45.0% | |
| GCCAAGGAGTTCTTCATGTA+TGG | + | chr3.4:49152540-49152559 | None:intergenic | 45.0% | |
| GGAATCTCCAGGATTTGGAT+AGG | + | chr3.4:49151096-49151115 | None:intergenic | 45.0% | |
| GTCAGTGCTCATGCAAACAA+TGG | + | chr3.4:49150729-49150748 | None:intergenic | 45.0% | |
| GTGCAACACTTCCAATTCAC+AGG | + | chr3.4:49149877-49149896 | None:intergenic | 45.0% | |
| GTTACGAAGGAGGTTCTTTC+TGG | - | chr3.4:49150594-49150613 | MS.gene90588:intron | 45.0% | |
| TAGAAAGGATCCTGAGCTGA+GGG | + | chr3.4:49149542-49149561 | None:intergenic | 45.0% | |
| TATTTGGGCTGATAGGCAAC+AGG | - | chr3.4:49152457-49152476 | MS.gene90588:intron | 45.0% | |
| TGGTGGGACGAGTTCATTAT+TGG | - | chr3.4:49150459-49150478 | MS.gene90588:intron | 45.0% | |
| ! | ATGTGAAAGCGTAGAATGGC+AGG | - | chr3.4:49150617-49150636 | MS.gene90588:intron | 45.0% |
| ! | CCTACTCTGTTTTCCACCTT+AGG | - | chr3.4:49151404-49151423 | MS.gene90588:intron | 45.0% |
| ! | CTGGATGTGAAAGCGTAGAA+TGG | - | chr3.4:49150613-49150632 | MS.gene90588:intron | 45.0% |
| ! | GAAAGTACGTGTTACGAAGG+AGG | - | chr3.4:49150584-49150603 | MS.gene90588:intron | 45.0% |
| ! | GCATTCTGGTTGGATGCATA+AGG | + | chr3.4:49151913-49151932 | None:intergenic | 45.0% |
| ! | TTCACTCCACCCGCATTTTT+GGG | + | chr3.4:49151271-49151290 | None:intergenic | 45.0% |
| ! | TTTCACTCCACCCGCATTTT+TGG | + | chr3.4:49151272-49151291 | None:intergenic | 45.0% |
| !! | CATGATGATACTGGCCTTGT+TGG | - | chr3.4:49153027-49153046 | MS.gene90588:intron | 45.0% |
| !!! | CATGAGCACTGACTTTTGGA+TGG | - | chr3.4:49150736-49150755 | MS.gene90588:CDS | 45.0% |
| ACAAGTCCCAAAAATGCGGG+TGG | - | chr3.4:49151262-49151281 | MS.gene90588:intron | 50.0% | |
| ACATGAAGAACTCCTTGGCC+AGG | - | chr3.4:49152541-49152560 | MS.gene90588:intron | 50.0% | |
| AGACCGAGAAGGACGAAGAA+TGG | + | chr3.4:49151474-49151493 | None:intergenic | 50.0% | |
| CCAAATCCTGGAGATTCCCT+GGG | - | chr3.4:49151098-49151117 | MS.gene90588:intron | 50.0% | |
| CCGAGAACTAATGAGGCTAC+CGG | - | chr3.4:49151876-49151895 | MS.gene90588:intron | 50.0% | |
| GCCAGAGAACCTTCTTGGTA+TGG | - | chr3.4:49151584-49151603 | MS.gene90588:intron | 50.0% | |
| GCCATACCAAGAAGGTTCTC+TGG | + | chr3.4:49151588-49151607 | None:intergenic | 50.0% | |
| GGATGCACCGAGAACTAATG+AGG | - | chr3.4:49151869-49151888 | MS.gene90588:intron | 50.0% | |
| GGGCCAGATCATGATGATAC+TGG | - | chr3.4:49153018-49153037 | MS.gene90588:intron | 50.0% | |
| GTAGAAAGGATCCTGAGCTG+AGG | + | chr3.4:49149543-49149562 | None:intergenic | 50.0% | |
| TCCAAATCCTGGAGATTCCC+TGG | - | chr3.4:49151097-49151116 | MS.gene90588:intron | 50.0% | |
| TTGCTGCCAGAGAACCTTCT+TGG | - | chr3.4:49151579-49151598 | MS.gene90588:intron | 50.0% | |
| ! | CCGGTAGCCTCATTAGTTCT+CGG | + | chr3.4:49151879-49151898 | None:intergenic | 50.0% |
| ! | GAAAGCGTAGAATGGCAGGT+AGG | - | chr3.4:49150621-49150640 | MS.gene90588:intron | 50.0% |
| ! | GTACAAAGAATCGGAGGCGT+TGG | - | chr3.4:49152509-49152528 | MS.gene90588:intron | 50.0% |
| AGCATACCCAGGGAATCTCC+AGG | + | chr3.4:49151107-49151126 | None:intergenic | 55.0% | |
| ATTCCCTGGGTATGCTTGCC+GGG | - | chr3.4:49151111-49151130 | MS.gene90588:intron | 55.0% | |
| CCCAGGGAATCTCCAGGATT+TGG | + | chr3.4:49151101-49151120 | None:intergenic | 55.0% | |
| GACAAGCAGTGCTCGTACTC+AGG | - | chr3.4:49151643-49151662 | MS.gene90588:intron | 55.0% | |
| GATTCCCTGGGTATGCTTGC+CGG | - | chr3.4:49151110-49151129 | MS.gene90588:intron | 55.0% | |
| GGCTGATAGGCAACAGGATG+AGG | - | chr3.4:49152463-49152482 | MS.gene90588:intron | 55.0% | |
| TTCCCCGGCAAGCATACCCA+GGG | + | chr3.4:49151117-49151136 | None:intergenic | 60.0% | |
| TTCCCTGGGTATGCTTGCCG+GGG | - | chr3.4:49151112-49151131 | MS.gene90588:intron | 60.0% | |
| CTTCCCCGGCAAGCATACCC+AGG | + | chr3.4:49151118-49151137 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 49149536 | 49153090 | 49149536 | ID=MS.gene90588 |
| chr3.4 | mRNA | 49149536 | 49153090 | 49149536 | ID=MS.gene90588.t1;Parent=MS.gene90588 |
| chr3.4 | exon | 49153037 | 49153090 | 49153037 | ID=MS.gene90588.t1.exon1;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49153037 | 49153090 | 49153037 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49151988 | 49152098 | 49151988 | ID=MS.gene90588.t1.exon2;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49151988 | 49152098 | 49151988 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49150962 | 49151075 | 49150962 | ID=MS.gene90588.t1.exon3;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49150962 | 49151075 | 49150962 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49150634 | 49150818 | 49150634 | ID=MS.gene90588.t1.exon4;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49150634 | 49150818 | 49150634 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49150064 | 49150154 | 49150064 | ID=MS.gene90588.t1.exon5;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49150064 | 49150154 | 49150064 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49149864 | 49149929 | 49149864 | ID=MS.gene90588.t1.exon6;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49149864 | 49149929 | 49149864 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| chr3.4 | exon | 49149536 | 49149646 | 49149536 | ID=MS.gene90588.t1.exon7;Parent=MS.gene90588.t1 |
| chr3.4 | CDS | 49149536 | 49149646 | 49149536 | ID=cds.MS.gene90588.t1;Parent=MS.gene90588.t1 |
| Gene Sequence |
| Protein sequence |
