Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94608.t1 | XP_024632360.1 | 77.9 | 240 | 47 | 2 | 51 | 285 | 20 | 258 | 7.00E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94608.t1 | Q9MAT6 | 52.9 | 51 | 24 | 0 | 235 | 285 | 158 | 208 | 1.5e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94608.t1 | A0A072VBD4 | 77.9 | 240 | 47 | 2 | 51 | 285 | 20 | 258 | 5.1e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene94608 | 0.814993 | 1.16E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene94608 | 0.809825 | 1.56E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene94608 | 0.823708 | 1.20E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene94608 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene94608 | 0.80374 | 3.02E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene94608 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene94608 | 0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene94608 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene94608 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene051332 | MS.gene94608 | 0.812936 | 3.30E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene94608 | 0.801973 | 6.99E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene94608 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene94608 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene94608 | 0.817163 | 3.80E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene94608 | 0.806588 | 7.65E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene94608 | 0.823014 | 1.74E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene94608 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene94608 | 0.816707 | 4.81E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene94608 | 0.820151 | 7.98E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene94608 | 0.807756 | 4.33E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene94608 | 0.824267 | 8.86E-54 | -1.69E-46 |
| MS.gene053621 | MS.gene94608 | 0.809705 | 1.66E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene94608 | 0.825495 | 4.54E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene94608 | 0.809149 | 2.18E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene94608 | 0.850018 | 2.23E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene94608 | 0.800485 | 1.41E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene94608 | 0.811664 | 6.25E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene94608 | 0.825597 | 4.30E-54 | -1.69E-46 |
| MS.gene055589 | MS.gene94608 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene94608 | 0.818376 | 2.02E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene94608 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene94608 | 0.818054 | 2.39E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene94608 | 0.81072 | 1.00E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene94608 | 0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene057921 | MS.gene94608 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene94608 | 0.804952 | 1.69E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene94608 | 0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene94608 | 0.809495 | 1.84E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene94608 | 0.81084 | 9.43E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene94608 | 0.807831 | 4.17E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene94608 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene059842 | MS.gene94608 | 0.802438 | 5.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94608.t1 | MTR_2g084410 | 82.800 | 250 | 17 | 4 | 51 | 285 | 20 | 258 | 7.18e-142 | 400 |
| MS.gene94608.t1 | MTR_2g084375 | 81.600 | 250 | 20 | 4 | 51 | 285 | 6 | 244 | 8.84e-140 | 394 |
| MS.gene94608.t1 | MTR_2g084425 | 82.184 | 174 | 18 | 2 | 35 | 200 | 199 | 367 | 1.27e-86 | 278 |
| MS.gene94608.t1 | MTR_2g084425 | 82.184 | 174 | 18 | 2 | 35 | 200 | 199 | 367 | 3.44e-86 | 278 |
| MS.gene94608.t1 | MTR_2g072760 | 76.336 | 131 | 28 | 1 | 49 | 176 | 5 | 135 | 3.84e-66 | 203 |
| MS.gene94608.t1 | MTR_2g072770 | 61.494 | 174 | 32 | 2 | 10 | 177 | 10 | 154 | 3.13e-63 | 196 |
| MS.gene94608.t1 | MTR_7g102610 | 32.967 | 182 | 115 | 2 | 1 | 182 | 198 | 372 | 1.54e-22 | 97.8 |
| MS.gene94608.t1 | MTR_3g009890 | 78.571 | 56 | 12 | 0 | 230 | 285 | 156 | 211 | 6.47e-21 | 90.1 |
| MS.gene94608.t1 | MTR_7g023750 | 41.284 | 109 | 59 | 1 | 54 | 162 | 404 | 507 | 1.46e-19 | 88.6 |
| MS.gene94608.t1 | MTR_7g023750 | 41.284 | 109 | 59 | 1 | 54 | 162 | 358 | 461 | 1.50e-19 | 88.6 |
| MS.gene94608.t1 | MTR_7g023750 | 41.284 | 109 | 59 | 1 | 54 | 162 | 401 | 504 | 1.61e-19 | 88.6 |
| MS.gene94608.t1 | MTR_1g062330 | 33.333 | 141 | 92 | 1 | 56 | 196 | 97 | 235 | 3.77e-19 | 87.8 |
| MS.gene94608.t1 | MTR_1g062330 | 33.333 | 141 | 92 | 1 | 56 | 196 | 97 | 235 | 3.83e-19 | 87.8 |
| MS.gene94608.t1 | MTR_1g067750 | 36.111 | 144 | 78 | 4 | 53 | 196 | 391 | 520 | 2.60e-18 | 85.1 |
| MS.gene94608.t1 | MTR_1g067750 | 38.532 | 109 | 62 | 1 | 54 | 162 | 401 | 504 | 3.63e-18 | 84.7 |
| MS.gene94608.t1 | MTR_1g068930 | 37.615 | 109 | 63 | 1 | 54 | 162 | 254 | 357 | 6.48e-17 | 81.3 |
| MS.gene94608.t1 | MTR_1g068930 | 37.615 | 109 | 63 | 1 | 54 | 162 | 254 | 357 | 6.71e-17 | 81.3 |
| MS.gene94608.t1 | MTR_4g063150 | 34.862 | 109 | 65 | 1 | 54 | 162 | 318 | 420 | 3.41e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94608.t1 | AT2G27980 | 46.907 | 194 | 89 | 5 | 24 | 208 | 342 | 530 | 1.33e-43 | 159 |
| MS.gene94608.t1 | AT2G36720 | 31.868 | 182 | 116 | 2 | 55 | 231 | 261 | 439 | 2.27e-21 | 94.4 |
| MS.gene94608.t1 | AT2G36720 | 31.868 | 182 | 116 | 2 | 55 | 231 | 261 | 439 | 2.27e-21 | 94.4 |
| MS.gene94608.t1 | AT5G13660 | 39.450 | 109 | 61 | 1 | 54 | 162 | 398 | 501 | 5.81e-19 | 87.0 |
| MS.gene94608.t1 | AT5G13660 | 38.532 | 109 | 63 | 1 | 54 | 162 | 398 | 502 | 1.51e-18 | 85.9 |
| MS.gene94608.t1 | AT5G59830 | 36.697 | 109 | 63 | 1 | 54 | 162 | 290 | 392 | 1.16e-17 | 82.8 |
| MS.gene94608.t1 | AT5G59830 | 36.697 | 109 | 63 | 1 | 54 | 162 | 290 | 392 | 1.16e-17 | 82.8 |
| MS.gene94608.t1 | AT5G59830 | 36.697 | 109 | 63 | 1 | 54 | 162 | 290 | 392 | 1.16e-17 | 82.8 |
| MS.gene94608.t1 | AT3G53680 | 32.026 | 153 | 96 | 2 | 10 | 162 | 141 | 285 | 4.76e-17 | 81.6 |
| MS.gene94608.t1 | AT3G53680 | 32.026 | 153 | 96 | 2 | 10 | 162 | 141 | 285 | 5.08e-17 | 81.6 |
| MS.gene94608.t1 | AT2G37520 | 33.945 | 109 | 67 | 1 | 54 | 162 | 172 | 275 | 5.33e-15 | 75.5 |
Find 81 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGGGAAAATGGGGTTTC+TGG | 0.209531 | 2.4:+15097869 | MS.gene94608:CDS |
| TTCTGGGGTTTCGCGGATTA+TGG | 0.250867 | 2.4:+15097886 | MS.gene94608:CDS |
| TCTTCTGGCTACTGGGATTC+TGG | 0.255622 | 2.4:+15097946 | MS.gene94608:CDS |
| TGATGTGTAGGCGCGTAAAC+CGG | 0.351934 | 2.4:+15098117 | MS.gene94608:intron |
| AATGTTGTTGAAAGGGAAAA+TGG | 0.353344 | 2.4:+15097860 | MS.gene94608:CDS |
| AGAGGATGCGCTCTTGGTTT+CGG | 0.354013 | 2.4:+15098715 | MS.gene94608:CDS |
| TGGGAGTTGTAAGGGGAATC+AGG | 0.356202 | 2.4:+15098192 | MS.gene94608:CDS |
| TGTCAAGGTGAAGGATCTTC+TGG | 0.356510 | 2.4:+15097931 | MS.gene94608:CDS |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.366436 | 2.4:-15099643 | None:intergenic |
| CTCTGGTAGTTGGTGGGAAA+AGG | 0.369985 | 2.4:+15097778 | MS.gene94608:CDS |
| GTGAAGGATCTTCTGGCTAC+TGG | 0.382782 | 2.4:+15097938 | MS.gene94608:CDS |
| AAAGGGAAAATGGGGTTTCT+GGG | 0.382880 | 2.4:+15097870 | MS.gene94608:CDS |
| ACAAGGTGTGATCAAAGATT+CGG | 0.383443 | 2.4:+15098153 | MS.gene94608:CDS |
| TGAAATCACCCAGGACCATT+TGG | 0.397269 | 2.4:-15098465 | None:intergenic |
| TGAGAATGGAAAACTCCTTC+GGG | 0.415866 | 2.4:+15098390 | MS.gene94608:CDS |
| CAAGGTGTGATCAAAGATTC+GGG | 0.420500 | 2.4:+15098154 | MS.gene94608:CDS |
| AAGGATAACGATGTTGTTGT+TGG | 0.429532 | 2.4:+15097812 | MS.gene94608:CDS |
| GATTATACTTACCTTGAGAA+TGG | 0.429569 | 2.4:+15098376 | MS.gene94608:CDS |
| ATGTTGTTGAAAGGGAAAAT+GGG | 0.431646 | 2.4:+15097861 | MS.gene94608:CDS |
| AAAAGAAGAGGATGCGCTCT+TGG | 0.439362 | 2.4:+15098709 | MS.gene94608:CDS |
| ATGGGGTTTCTGGGGTTTCG+CGG | 0.444414 | 2.4:+15097879 | MS.gene94608:CDS |
| ACTTCTTCCAAGAAAATAAG+AGG | 0.454192 | 2.4:+15098790 | MS.gene94608:CDS |
| TTGAGAATGGAAAACTCCTT+CGG | 0.454228 | 2.4:+15098389 | MS.gene94608:CDS |
| GGCGCGTAAACCGGGAGAAA+AGG | 0.458730 | 2.4:+15098126 | MS.gene94608:intron |
| GATGTGTAGGCGCGTAAACC+GGG | 0.460301 | 2.4:+15098118 | MS.gene94608:intron |
| AGAAGATCCTTCACCTTGAC+AGG | 0.462800 | 2.4:-15097929 | None:intergenic |
| ATCCAACGGAAGACTTGAAC+AGG | 0.468127 | 2.4:-15098425 | None:intergenic |
| GTCTCTTTCAACTCCATGCA+TGG | 0.468548 | 2.4:-15098664 | None:intergenic |
| ATATATAGTCACGGTGGACC+TGG | 0.469482 | 2.4:+15099711 | MS.gene94608:CDS |
| TAAAGAGGTCCAAATGGTCC+TGG | 0.476200 | 2.4:+15098456 | MS.gene94608:CDS |
| TTATGGTGAAGCCTGGTAAG+AGG | 0.482687 | 2.4:+15097903 | MS.gene94608:CDS |
| TGAAGAGAGGCTCTGGTAGT+TGG | 0.485357 | 2.4:+15097768 | MS.gene94608:CDS |
| TCAGTGCATGGAACAATTGA+CGG | 0.496206 | 2.4:+15099673 | MS.gene94608:CDS |
| TCTGGTAGTTGGTGGGAAAA+GGG | 0.496285 | 2.4:+15097779 | MS.gene94608:CDS |
| GTTGGATACATTGGATAAAG+AGG | 0.497086 | 2.4:+15098441 | MS.gene94608:CDS |
| TGCTGCTAATGTTGTTGAAA+GGG | 0.499182 | 2.4:+15097853 | MS.gene94608:CDS |
| AAGTCTTCCGTTGGATACAT+TGG | 0.504489 | 2.4:+15098432 | MS.gene94608:CDS |
| TTCTCAAGGTAAGTATAATC+CGG | 0.505601 | 2.4:-15098373 | None:intergenic |
| ATTGGATAAAGAGGTCCAAA+TGG | 0.516952 | 2.4:+15098450 | MS.gene94608:CDS |
| CTGGCTACTGGGATTCTGGA+GGG | 0.517418 | 2.4:+15097950 | MS.gene94608:CDS |
| TCGCGGATTATGGTGAAGCC+TGG | 0.518339 | 2.4:+15097896 | MS.gene94608:CDS |
| TGTTGTTGAAAGGGAAAATG+GGG | 0.518988 | 2.4:+15097862 | MS.gene94608:CDS |
| CAAACAATGAAGAGAGGCTC+TGG | 0.525976 | 2.4:+15097761 | None:intergenic |
| TAGTGCTAGTAAACGTCCTC+CGG | 0.529930 | 2.4:+15098354 | MS.gene94608:CDS |
| TGCCTGTTCAAGTCTTCCGT+TGG | 0.532331 | 2.4:+15098423 | MS.gene94608:CDS |
| TTGACAGGAAACCTCTTACC+AGG | 0.534154 | 2.4:-15097914 | None:intergenic |
| TGAAGGATCTTCTGGCTACT+GGG | 0.535951 | 2.4:+15097939 | MS.gene94608:CDS |
| GGAAAAGGGTGAAGAAATCA+AGG | 0.538672 | 2.4:+15097793 | MS.gene94608:CDS |
| AATATTTGTTTCAACTGCAG+AGG | 0.546957 | 2.4:+15098502 | MS.gene94608:CDS |
| AGAGAGGCTCTGGTAGTTGG+TGG | 0.551590 | 2.4:+15097771 | MS.gene94608:CDS |
| TTGCTGCTAATGTTGTTGAA+AGG | 0.552470 | 2.4:+15097852 | MS.gene94608:CDS |
| TGGTAAGAGGTTTCCTGTCA+AGG | 0.557637 | 2.4:+15097916 | MS.gene94608:CDS |
| CCGGGAGAAAAGGATTTACA+AGG | 0.568192 | 2.4:+15098136 | MS.gene94608:CDS |
| TCTGGCTACTGGGATTCTGG+AGG | 0.573761 | 2.4:+15097949 | MS.gene94608:CDS |
| ATTGAAAGTGAGATATGTCA+AGG | 0.573844 | 2.4:+15097973 | MS.gene94608:CDS |
| GTCAATTTCTGAATCTAACA+AGG | 0.573857 | 2.4:+15098618 | MS.gene94608:CDS |
| GAAGAACCGAGTGTCTGTGC+TGG | 0.576107 | 2.4:-15099652 | None:intergenic |
| CAGTGCATGGAACAATTGAC+GGG | 0.580953 | 2.4:+15099674 | MS.gene94608:CDS |
| GAGTTGAAAGAGACTTCTGC+AGG | 0.582564 | 2.4:+15098673 | MS.gene94608:CDS |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 2.4:+15099730 | MS.gene94608:CDS |
| TATATAGTCACGGTGGACCT+GGG | 0.588733 | 2.4:+15099712 | MS.gene94608:CDS |
| GAGATATGTCAAGGGACAGA+AGG | 0.592127 | 2.4:+15097982 | MS.gene94608:CDS |
| ACTAGTATGCAATCCATGCA+TGG | 0.592882 | 2.4:+15098651 | MS.gene94608:CDS |
| ACTTCTTCCAAGAAAAGAAG+AGG | 0.593684 | 2.4:+15098697 | MS.gene94608:CDS |
| AAAGAGGTCCAAATGGTCCT+GGG | 0.599169 | 2.4:+15098457 | MS.gene94608:CDS |
| GAGAGGCTCTGGTAGTTGGT+GGG | 0.603424 | 2.4:+15097772 | MS.gene94608:CDS |
| GAGGTTTCCTGTCAAGGTGA+AGG | 0.604010 | 2.4:+15097922 | MS.gene94608:CDS |
| AAGGGAAAATGGGGTTTCTG+GGG | 0.606981 | 2.4:+15097871 | MS.gene94608:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 2.4:-15099729 | None:intergenic |
| ATTGACGGGAAATTTGATGA+CGG | 0.626327 | 2.4:+15099688 | MS.gene94608:CDS |
| ACACTCGGTTCTTCAGTGCA+TGG | 0.628634 | 2.4:+15099661 | MS.gene94608:CDS |
| ATTAGTCCAGCACAGACACT+CGG | 0.635032 | 2.4:+15099646 | MS.gene94608:CDS |
| TCTTTATCCAATGTATCCAA+CGG | 0.644524 | 2.4:-15098439 | None:intergenic |
| TCAATTTCTGAATCTAACAA+GGG | 0.669663 | 2.4:+15098619 | MS.gene94608:CDS |
| TTGAAAGTGAGATATGTCAA+GGG | 0.671458 | 2.4:+15097974 | MS.gene94608:CDS |
| TGTGACCAAACAATGAAGAG+AGG | 0.676612 | 2.4:+15097755 | None:intergenic |
| TGATGACGGATATATAGTCA+CGG | 0.676944 | 2.4:+15099702 | MS.gene94608:CDS |
| AGGCATTCATGACATCCCGA+AGG | 0.693693 | 2.4:-15098405 | None:intergenic |
| TCAAGGTAAGTATAATCCGG+AGG | 0.695456 | 2.4:-15098370 | None:intergenic |
| ACTGCATTGTGAAATCACCC+AGG | 0.736544 | 2.4:-15098474 | None:intergenic |
| TGACGGATATATAGTCACGG+TGG | 0.799576 | 2.4:+15099705 | MS.gene94608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAAGTTTAATCAAA+AGG | - | chr2.4:15098580-15098599 | None:intergenic | 15.0% |
| !!! | GTTTTGAACTTTTTTGATTT+TGG | + | chr2.4:15098011-15098030 | MS.gene94608:intron | 20.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | + | chr2.4:15099560-15099579 | MS.gene94608:intron | 25.0% |
| ! | AACTAATGGAAACAACTTAT+AGG | + | chr2.4:15099406-15099425 | MS.gene94608:intron | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | + | chr2.4:15099221-15099240 | MS.gene94608:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | + | chr2.4:15098739-15098758 | MS.gene94608:CDS | 25.0% |
| ! | TCAATTTCTGAATCTAACAA+GGG | + | chr2.4:15098619-15098638 | MS.gene94608:CDS | 25.0% |
| ! | TTTATTCGTAAATGATGTGT+AGG | + | chr2.4:15098105-15098124 | MS.gene94608:intron | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | + | chr2.4:15099124-15099143 | MS.gene94608:intron | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | + | chr2.4:15098963-15098982 | MS.gene94608:intron | 25.0% |
| !!! | AATTTTGATGAACTGTTTGT+AGG | + | chr2.4:15098595-15098614 | MS.gene94608:intron | 25.0% |
| !!! | ATTGTTTTTTTTGCTTGTGT+GGG | + | chr2.4:15098236-15098255 | MS.gene94608:intron | 25.0% |
| !!! | ATTTTGATGAACTGTTTGTA+GGG | + | chr2.4:15098596-15098615 | MS.gene94608:intron | 25.0% |
| !!! | TATTGTTTTTTTTGCTTGTG+TGG | + | chr2.4:15098235-15098254 | MS.gene94608:intron | 25.0% |
| !!! | TGATTCTTTTGTTTTGAAAC+TGG | + | chr2.4:15099068-15099087 | MS.gene94608:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | - | chr2.4:15098800-15098819 | None:intergenic | 25.0% |
| AATATTTGTTTCAACTGCAG+AGG | + | chr2.4:15098502-15098521 | MS.gene94608:CDS | 30.0% | |
| AATGTTGTTGAAAGGGAAAA+TGG | + | chr2.4:15097860-15097879 | MS.gene94608:CDS | 30.0% | |
| ACTTCTTCCAAGAAAATAAG+AGG | + | chr2.4:15098790-15098809 | MS.gene94608:CDS | 30.0% | |
| AGAAACGAATCATCTATGAA+TGG | - | chr2.4:15099112-15099131 | None:intergenic | 30.0% | |
| ATGTTGTTGAAAGGGAAAAT+GGG | + | chr2.4:15097861-15097880 | MS.gene94608:CDS | 30.0% | |
| ATTGAAAGTGAGATATGTCA+AGG | + | chr2.4:15097973-15097992 | MS.gene94608:CDS | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | + | chr2.4:15099220-15099239 | MS.gene94608:intron | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | + | chr2.4:15098376-15098395 | MS.gene94608:CDS | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | - | chr2.4:15098869-15098888 | None:intergenic | 30.0% | |
| GTCAATTTCTGAATCTAACA+AGG | + | chr2.4:15098618-15098637 | MS.gene94608:CDS | 30.0% | |
| GTGAAATTGAGAATGATGTT+CGG | + | chr2.4:15098042-15098061 | MS.gene94608:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+CGG | - | chr2.4:15098442-15098461 | None:intergenic | 30.0% | |
| TTCTCAAGGTAAGTATAATC+CGG | - | chr2.4:15098376-15098395 | None:intergenic | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | + | chr2.4:15097974-15097993 | MS.gene94608:CDS | 30.0% | |
| !!! | GAACTTTTTTGATTTTGGTC+TGG | + | chr2.4:15098016-15098035 | MS.gene94608:intron | 30.0% |
| !!! | GGATTTTTTTTCCTATCTTG+TGG | + | chr2.4:15098063-15098082 | MS.gene94608:intron | 30.0% |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | + | chr2.4:15098297-15098316 | MS.gene94608:intron | 30.0% |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | - | chr2.4:15098770-15098789 | None:intergenic | 30.0% |
| AAACTCTCCTAGAGAACTAA+TGG | + | chr2.4:15099392-15099411 | MS.gene94608:intron | 35.0% | |
| AAGGATAACGATGTTGTTGT+TGG | + | chr2.4:15097812-15097831 | MS.gene94608:CDS | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | - | chr2.4:15098551-15098570 | None:intergenic | 35.0% | |
| ACAAGGTGTGATCAAAGATT+CGG | + | chr2.4:15098153-15098172 | MS.gene94608:CDS | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | + | chr2.4:15098697-15098716 | MS.gene94608:CDS | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | - | chr2.4:15098890-15098909 | None:intergenic | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | + | chr2.4:15099688-15099707 | MS.gene94608:CDS | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | + | chr2.4:15098450-15098469 | MS.gene94608:CDS | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | + | chr2.4:15099295-15099314 | MS.gene94608:intron | 35.0% | |
| GCATGCAACTCAAAAACATT+CGG | - | chr2.4:15098331-15098350 | None:intergenic | 35.0% | |
| GTGATGTGGAAATAGAAGTA+AGG | + | chr2.4:15098977-15098996 | MS.gene94608:intron | 35.0% | |
| GTTGGATACATTGGATAAAG+AGG | + | chr2.4:15098441-15098460 | MS.gene94608:CDS | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | + | chr2.4:15098880-15098899 | MS.gene94608:intron | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | - | chr2.4:15099199-15099218 | None:intergenic | 35.0% | |
| TGCTGCTAATGTTGTTGAAA+GGG | + | chr2.4:15097853-15097872 | MS.gene94608:CDS | 35.0% | |
| TGTTGTTGAAAGGGAAAATG+GGG | + | chr2.4:15097862-15097881 | MS.gene94608:CDS | 35.0% | |
| TTGAGAATGGAAAACTCCTT+CGG | + | chr2.4:15098389-15098408 | MS.gene94608:CDS | 35.0% | |
| TTGCTGCTAATGTTGTTGAA+AGG | + | chr2.4:15097852-15097871 | MS.gene94608:CDS | 35.0% | |
| ! | GTTGTTTCCATTAGTTCTCT+AGG | - | chr2.4:15099402-15099421 | None:intergenic | 35.0% |
| !! | TGATGACGGATATATAGTCA+CGG | + | chr2.4:15099702-15099721 | MS.gene94608:CDS | 35.0% |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | + | chr2.4:15098331-15098350 | MS.gene94608:CDS | 35.0% |
| !!! | GAGTTTTGGTTGACTTCTTT+TGG | + | chr2.4:15099005-15099024 | MS.gene94608:intron | 35.0% |
| AAAGGGAAAATGGGGTTTCT+GGG | + | chr2.4:15097870-15097889 | MS.gene94608:CDS | 40.0% | |
| AACAGTCACCTATGTGCTTA+TGG | - | chr2.4:15099306-15099325 | None:intergenic | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | + | chr2.4:15099307-15099326 | MS.gene94608:intron | 40.0% | |
| AAGTCTTCCGTTGGATACAT+TGG | + | chr2.4:15098432-15098451 | MS.gene94608:CDS | 40.0% | |
| ACACTAATGCACCACAAGAT+AGG | - | chr2.4:15098077-15098096 | None:intergenic | 40.0% | |
| ACTAGTATGCAATCCATGCA+TGG | + | chr2.4:15098651-15098670 | MS.gene94608:CDS | 40.0% | |
| CAAGGTGTGATCAAAGATTC+GGG | + | chr2.4:15098154-15098173 | MS.gene94608:CDS | 40.0% | |
| CTATACGTCCATCATGAGTT+AGG | + | chr2.4:15098879-15098898 | MS.gene94608:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | + | chr2.4:15098207-15098226 | MS.gene94608:intron | 40.0% | |
| GGAAAAGGGTGAAGAAATCA+AGG | + | chr2.4:15097793-15097812 | MS.gene94608:CDS | 40.0% | |
| TAAGCACATAGGTGACTGTT+TGG | + | chr2.4:15099306-15099325 | MS.gene94608:intron | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | - | chr2.4:15098373-15098392 | None:intergenic | 40.0% | |
| TCAGTGCATGGAACAATTGA+CGG | + | chr2.4:15099673-15099692 | MS.gene94608:CDS | 40.0% | |
| TGAGAATGGAAAACTCCTTC+GGG | + | chr2.4:15098390-15098409 | MS.gene94608:CDS | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | + | chr2.4:15099325-15099344 | MS.gene94608:intron | 40.0% | |
| ! | ATCGAAAGCTTTATCGCACT+AGG | - | chr2.4:15099259-15099278 | None:intergenic | 40.0% |
| ! | CCTTGTAAATCCTTTTCTCC+CGG | - | chr2.4:15098139-15098158 | None:intergenic | 40.0% |
| ! | CGGGAATTTTGTGCTTTTGT+GGG | + | chr2.4:15098173-15098192 | MS.gene94608:CDS | 40.0% |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | - | chr2.4:15098390-15098409 | None:intergenic | 40.0% |
| ! | TCGGGAATTTTGTGCTTTTG+TGG | + | chr2.4:15098172-15098191 | MS.gene94608:CDS | 40.0% |
| ! | TGCTTTTGTGGGAGTTGTAA+GGG | + | chr2.4:15098184-15098203 | MS.gene94608:CDS | 40.0% |
| !! | GAAGTAAGGAGCATGAGTTT+TGG | + | chr2.4:15098991-15099010 | MS.gene94608:intron | 40.0% |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | - | chr2.4:15098766-15098785 | None:intergenic | 40.0% |
| AAAAGAAGAGGATGCGCTCT+TGG | + | chr2.4:15098709-15098728 | MS.gene94608:CDS | 45.0% | |
| AAAGAGGTCCAAATGGTCCT+GGG | + | chr2.4:15098457-15098476 | MS.gene94608:CDS | 45.0% | |
| AAGGGAAAATGGGGTTTCTG+GGG | + | chr2.4:15097871-15097890 | MS.gene94608:CDS | 45.0% | |
| ACTGCATTGTGAAATCACCC+AGG | - | chr2.4:15098477-15098496 | None:intergenic | 45.0% | |
| AGAAGATCCTTCACCTTGAC+AGG | - | chr2.4:15097932-15097951 | None:intergenic | 45.0% | |
| AGGGGAATCAGGCAAGTAAA+TGG | + | chr2.4:15098203-15098222 | MS.gene94608:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | - | chr2.4:15099646-15099665 | None:intergenic | 45.0% | |
| ATATATAGTCACGGTGGACC+TGG | + | chr2.4:15099711-15099730 | MS.gene94608:CDS | 45.0% | |
| ATCCAACGGAAGACTTGAAC+AGG | - | chr2.4:15098428-15098447 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | + | chr2.4:15099646-15099665 | MS.gene94608:CDS | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | + | chr2.4:15099674-15099693 | MS.gene94608:CDS | 45.0% | |
| CCGGGAGAAAAGGATTTACA+AGG | + | chr2.4:15098136-15098155 | MS.gene94608:CDS | 45.0% | |
| GAAAGGGAAAATGGGGTTTC+TGG | + | chr2.4:15097869-15097888 | MS.gene94608:CDS | 45.0% | |
| GAGATATGTCAAGGGACAGA+AGG | + | chr2.4:15097982-15098001 | MS.gene94608:CDS | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | + | chr2.4:15098673-15098692 | MS.gene94608:CDS | 45.0% | |
| GGAATCAGGCAAGTAAATGG+AGG | + | chr2.4:15098206-15098225 | MS.gene94608:intron | 45.0% | |
| GTCTCTTTCAACTCCATGCA+TGG | - | chr2.4:15098667-15098686 | None:intergenic | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | + | chr2.4:15098252-15098271 | MS.gene94608:intron | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | + | chr2.4:15098456-15098475 | MS.gene94608:CDS | 45.0% | |
| TAGTGCTAGTAAACGTCCTC+CGG | + | chr2.4:15098354-15098373 | MS.gene94608:CDS | 45.0% | |
| TATATAGTCACGGTGGACCT+GGG | + | chr2.4:15099712-15099731 | MS.gene94608:CDS | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | - | chr2.4:15098468-15098487 | None:intergenic | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | + | chr2.4:15099318-15099337 | MS.gene94608:intron | 45.0% | |
| TGGTAAGAGGTTTCCTGTCA+AGG | + | chr2.4:15097916-15097935 | MS.gene94608:CDS | 45.0% | |
| TGTCAAGGTGAAGGATCTTC+TGG | + | chr2.4:15097931-15097950 | MS.gene94608:CDS | 45.0% | |
| TTATGGTGAAGCCTGGTAAG+AGG | + | chr2.4:15097903-15097922 | MS.gene94608:CDS | 45.0% | |
| TTGACAGGAAACCTCTTACC+AGG | - | chr2.4:15097917-15097936 | None:intergenic | 45.0% | |
| ! | AGCGCATCCTCTTCTTTTCT+TGG | - | chr2.4:15098707-15098726 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGGAGTTGTAAG+GGG | + | chr2.4:15098185-15098204 | MS.gene94608:CDS | 45.0% |
| ! | GTGCTTTTGTGGGAGTTGTA+AGG | + | chr2.4:15098183-15098202 | MS.gene94608:CDS | 45.0% |
| ! | TGAAGGATCTTCTGGCTACT+GGG | + | chr2.4:15097939-15097958 | MS.gene94608:CDS | 45.0% |
| ! | TGACGGATATATAGTCACGG+TGG | + | chr2.4:15099705-15099724 | MS.gene94608:CDS | 45.0% |
| !! | TCTGGTAGTTGGTGGGAAAA+GGG | + | chr2.4:15097779-15097798 | MS.gene94608:CDS | 45.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | + | chr2.4:15099661-15099680 | MS.gene94608:CDS | 50.0% | |
| AGAGGATGCGCTCTTGGTTT+CGG | + | chr2.4:15098715-15098734 | MS.gene94608:CDS | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | - | chr2.4:15098408-15098427 | None:intergenic | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | + | chr2.4:15098211-15098230 | MS.gene94608:intron | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | - | chr2.4:15099732-15099751 | None:intergenic | 50.0% | |
| GAGGTTTCCTGTCAAGGTGA+AGG | + | chr2.4:15097922-15097941 | MS.gene94608:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | + | chr2.4:15098117-15098136 | MS.gene94608:intron | 50.0% | |
| TGCCTGTTCAAGTCTTCCGT+TGG | + | chr2.4:15098423-15098442 | MS.gene94608:CDS | 50.0% | |
| TGGGAGTTGTAAGGGGAATC+AGG | + | chr2.4:15098192-15098211 | MS.gene94608:CDS | 50.0% | |
| ! | GTGAAGGATCTTCTGGCTAC+TGG | + | chr2.4:15097938-15097957 | MS.gene94608:CDS | 50.0% |
| ! | TCTTCTGGCTACTGGGATTC+TGG | + | chr2.4:15097946-15097965 | MS.gene94608:CDS | 50.0% |
| ! | TGAAGAGAGGCTCTGGTAGT+TGG | + | chr2.4:15097768-15097787 | MS.gene94608:CDS | 50.0% |
| !! | CTCTGGTAGTTGGTGGGAAA+AGG | + | chr2.4:15097778-15097797 | MS.gene94608:CDS | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | + | chr2.4:15099730-15099749 | MS.gene94608:CDS | 50.0% |
| !! | TTCTGGGGTTTCGCGGATTA+TGG | + | chr2.4:15097886-15097905 | MS.gene94608:CDS | 50.0% |
| CTGGCTACTGGGATTCTGGA+GGG | + | chr2.4:15097950-15097969 | MS.gene94608:CDS | 55.0% | |
| GAAGAACCGAGTGTCTGTGC+TGG | - | chr2.4:15099655-15099674 | None:intergenic | 55.0% | |
| GATGTGTAGGCGCGTAAACC+GGG | + | chr2.4:15098118-15098137 | MS.gene94608:intron | 55.0% | |
| TCTGGCTACTGGGATTCTGG+AGG | + | chr2.4:15097949-15097968 | MS.gene94608:CDS | 55.0% | |
| ! | AGAGAGGCTCTGGTAGTTGG+TGG | + | chr2.4:15097771-15097790 | MS.gene94608:CDS | 55.0% |
| ! | GAGAGGCTCTGGTAGTTGGT+GGG | + | chr2.4:15097772-15097791 | MS.gene94608:CDS | 55.0% |
| ! | TCGCGGATTATGGTGAAGCC+TGG | + | chr2.4:15097896-15097915 | MS.gene94608:CDS | 55.0% |
| !! | ATGGGGTTTCTGGGGTTTCG+CGG | + | chr2.4:15097879-15097898 | MS.gene94608:CDS | 55.0% |
| GGCGCGTAAACCGGGAGAAA+AGG | + | chr2.4:15098126-15098145 | MS.gene94608:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 15097767 | 15099771 | 15097767 | ID=MS.gene94608 |
| chr2.4 | mRNA | 15097767 | 15099771 | 15097767 | ID=MS.gene94608.t1;Parent=MS.gene94608 |
| chr2.4 | exon | 15097767 | 15098003 | 15097767 | ID=MS.gene94608.t1.exon1;Parent=MS.gene94608.t1 |
| chr2.4 | CDS | 15097767 | 15098003 | 15097767 | ID=cds.MS.gene94608.t1;Parent=MS.gene94608.t1 |
| chr2.4 | exon | 15098127 | 15098213 | 15098127 | ID=MS.gene94608.t1.exon2;Parent=MS.gene94608.t1 |
| chr2.4 | CDS | 15098127 | 15098213 | 15098127 | ID=cds.MS.gene94608.t1;Parent=MS.gene94608.t1 |
| chr2.4 | exon | 15098319 | 15098523 | 15098319 | ID=MS.gene94608.t1.exon3;Parent=MS.gene94608.t1 |
| chr2.4 | CDS | 15098319 | 15098523 | 15098319 | ID=cds.MS.gene94608.t1;Parent=MS.gene94608.t1 |
| chr2.4 | exon | 15098617 | 15098811 | 15098617 | ID=MS.gene94608.t1.exon4;Parent=MS.gene94608.t1 |
| chr2.4 | CDS | 15098617 | 15098811 | 15098617 | ID=cds.MS.gene94608.t1;Parent=MS.gene94608.t1 |
| chr2.4 | exon | 15099638 | 15099771 | 15099638 | ID=MS.gene94608.t1.exon5;Parent=MS.gene94608.t1 |
| chr2.4 | CDS | 15099638 | 15099771 | 15099638 | ID=cds.MS.gene94608.t1;Parent=MS.gene94608.t1 |
| Gene Sequence |
| Protein sequence |
