AlfalfaGEDB | MS.gene98550

M. sativa cultivar XinJiangDaYe / MS.gene98550

KEGG: K09286
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98550.t1	XP_003616866.1	89.9	178	16	2	1	177	1	177	7.30E-81	310.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98550.t1	Q9SXS8	41.2	204	73	5	13	170	23	225	2.2e-25	117.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98550.t1	G7KH81	89.9	178	16	2	1	177	1	177	5.3e-81	310.1

TFs/TRs:

Gene ID	Type	Classification
MS.gene98550.t1	TF	AP2/ERF-ERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene98550	0.836233	1.06E-56	-1.69E-46
MS.gene049531	MS.gene98550	0.8035	3.38E-49	-1.69E-46
MS.gene049853	MS.gene98550	0.890159	1.27E-73	-1.69E-46
MS.gene050140	MS.gene98550	0.802631	5.12E-49	-1.69E-46
MS.gene050430	MS.gene98550	0.818547	1.85E-52	-1.69E-46
MS.gene050611	MS.gene98550	0.801586	8.40E-49	-1.69E-46
MS.gene053512	MS.gene98550	0.821692	3.53E-53	-1.69E-46
MS.gene053974	MS.gene98550	0.836996	6.74E-57	-1.69E-46
MS.gene054174	MS.gene98550	0.802341	5.87E-49	-1.69E-46
MS.gene054175	MS.gene98550	0.80776	4.32E-50	-1.69E-46
MS.gene054484	MS.gene98550	0.821608	3.69E-53	-1.69E-46
MS.gene055017	MS.gene98550	0.868637	5.63E-66	-1.69E-46
MS.gene055056	MS.gene98550	0.826309	2.91E-54	-1.69E-46
MS.gene055058	MS.gene98550	0.852268	5.16E-61	-1.69E-46
MS.gene05531	MS.gene98550	0.809078	2.26E-50	-1.69E-46
MS.gene05762	MS.gene98550	0.802399	5.71E-49	-1.69E-46
MS.gene058515	MS.gene98550	0.806272	8.92E-50	-1.69E-46
MS.gene058580	MS.gene98550	0.816331	5.84E-52	-1.69E-46
MS.gene059276	MS.gene98550	0.869782	2.39E-66	-1.69E-46
MS.gene059458	MS.gene98550	0.816093	6.61E-52	-1.69E-46
MS.gene059584	MS.gene98550	0.807929	3.97E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98550.t1	MTR_5g085130	89.888	178	16	2	1	177	1	177	8.86e-108	306
MS.gene98550.t1	MTR_5g085125	67.630	173	48	3	5	174	3	170	4.63e-67	203
MS.gene98550.t1	MTR_2g078680	62.353	85	27	2	9	88	22	106	2.85e-25	97.4
MS.gene98550.t1	MTR_5g085070	76.190	63	14	1	14	75	47	109	4.48e-25	99.0
MS.gene98550.t1	MTR_5g085100	71.212	66	18	1	11	75	39	104	4.67e-25	99.0
MS.gene98550.t1	MTR_3g053690	35.961	203	84	7	14	170	23	225	1.50e-22	90.9
MS.gene98550.t1	MTR_4g078710	50.467	107	39	3	13	105	23	129	6.94e-22	89.0
MS.gene98550.t1	MTR_2g014340	65.152	66	22	1	11	75	12	77	4.19e-21	86.7
MS.gene98550.t1	MTR_2g014300	67.188	64	20	1	11	73	8	71	4.96e-21	85.5
MS.gene98550.t1	MTR_8g092460	41.593	113	63	2	17	128	144	254	8.70e-20	85.1
MS.gene98550.t1	MTR_2g438180	62.319	69	24	2	10	76	6	74	2.01e-19	80.5
MS.gene98550.t1	MTR_1g074310	58.571	70	27	2	9	76	12	81	1.20e-18	78.6
MS.gene98550.t1	MTR_1g070070	62.121	66	23	2	14	77	17	82	6.23e-18	77.0
MS.gene98550.t1	MTR_8g069360	65.574	61	20	1	16	75	42	102	9.81e-18	80.5
MS.gene98550.t1	MTR_7g020980	52.500	80	37	1	8	86	41	120	1.14e-17	77.0
MS.gene98550.t1	MTR_3g056750	54.545	77	30	4	7	81	24	97	2.48e-17	73.9
MS.gene98550.t1	MTR_4g086165	61.905	63	23	1	13	74	77	139	4.93e-17	75.9
MS.gene98550.t1	MTR_7g021010	58.209	67	27	1	8	73	2	68	5.69e-17	73.9
MS.gene98550.t1	MTR_7g021010	55.224	67	29	1	8	73	41	107	6.93e-17	74.7
MS.gene98550.t1	MTR_1g028560	57.143	70	27	2	15	81	112	181	1.24e-16	77.0
MS.gene98550.t1	MTR_4g010640	53.425	73	33	1	14	85	3	75	1.37e-16	74.7
MS.gene98550.t1	MTR_8g099215	38.017	121	63	2	17	125	106	226	1.40e-16	76.3
MS.gene98550.t1	MTR_4g100420	53.333	75	33	2	13	85	152	226	2.78e-16	75.5
MS.gene98550.t1	MTR_5g032820	62.295	61	22	1	16	75	44	104	2.88e-16	75.9
MS.gene98550.t1	MTR_2g015050	61.765	68	24	2	15	80	131	198	3.06e-16	75.1
MS.gene98550.t1	MTR_4g086160	63.793	58	20	1	18	74	96	153	3.61e-16	73.9
MS.gene98550.t1	MTR_4g086220	63.793	58	20	1	18	74	96	153	3.62e-16	74.3
MS.gene98550.t1	MTR_4g086190	63.793	58	20	1	18	74	96	153	5.44e-16	73.6
MS.gene98550.t1	MTR_1g048610	45.556	90	47	2	4	91	75	164	5.97e-16	73.6
MS.gene98550.t1	MTR_2g019750	53.521	71	32	1	10	79	42	112	1.93e-15	73.2
MS.gene98550.t1	MTR_4g100450	55.882	68	28	2	12	77	148	215	2.12e-15	73.2
MS.gene98550.t1	MTR_8g006815	51.136	88	39	3	17	100	95	182	2.25e-15	71.2
MS.gene98550.t1	MTR_4g114570	59.322	59	23	1	17	74	6	64	2.48e-15	71.6
MS.gene98550.t1	MTR_1g097190	48.000	75	37	2	4	76	9	83	3.67e-15	69.3
MS.gene98550.t1	MTR_7g096750	59.677	62	23	2	14	73	16	77	5.76e-15	68.9
MS.gene98550.t1	MTR_1g074230	52.703	74	29	3	10	77	7	80	6.20e-15	68.9
MS.gene98550.t1	MTR_2g016730	51.471	68	32	1	9	75	14	81	6.84e-15	72.0
MS.gene98550.t1	MTR_8g022820	52.857	70	32	1	5	73	110	179	7.02e-15	72.0
MS.gene98550.t1	MTR_1g074250	52.174	69	30	2	12	77	13	81	7.09e-15	68.6
MS.gene98550.t1	MTR_8g022820	52.857	70	32	1	5	73	111	180	7.25e-15	72.0
MS.gene98550.t1	MTR_8g022820	52.857	70	32	1	5	73	111	180	7.25e-15	72.0
MS.gene98550.t1	MTR_4g088005	50.667	75	34	3	8	79	46	120	9.21e-15	67.8
MS.gene98550.t1	MTR_2g103700	57.627	59	24	1	17	74	6	64	9.27e-15	69.3
MS.gene98550.t1	MTR_2g105380	52.857	70	32	1	5	73	104	173	9.28e-15	71.6
MS.gene98550.t1	MTR_6g088405	59.649	57	22	1	18	73	44	100	9.42e-15	70.1
MS.gene98550.t1	MTR_3g090760	55.000	60	26	1	17	75	112	171	1.29e-14	71.2
MS.gene98550.t1	MTR_7g096700	53.333	75	32	3	2	73	3	77	1.42e-14	67.8
MS.gene98550.t1	MTR_5g009620	58.333	60	24	1	17	75	111	170	1.53e-14	70.9
MS.gene98550.t1	MTR_4g119270	61.404	57	21	1	17	72	52	108	1.66e-14	70.9
MS.gene98550.t1	MTR_8g006840	56.923	65	26	2	11	73	118	182	1.83e-14	68.9
MS.gene98550.t1	MTR_1g069960	61.111	72	26	2	15	84	24	95	2.31e-14	67.4
MS.gene98550.t1	MTR_2g015040	52.000	75	33	3	10	82	56	129	2.48e-14	67.8
MS.gene98550.t1	MTR_2g101340	57.895	57	23	1	18	73	41	97	2.61e-14	68.6
MS.gene98550.t1	MTR_2g043050	57.895	57	23	1	18	73	19	75	2.76e-14	68.6
MS.gene98550.t1	MTR_8g006410	59.649	57	22	1	18	73	52	108	3.20e-14	68.6
MS.gene98550.t1	MTR_4g100380	50.617	81	37	3	2	79	128	208	3.65e-14	69.3
MS.gene98550.t1	MTR_1g070035	61.017	59	21	2	18	74	77	135	3.91e-14	68.6
MS.gene98550.t1	MTR_2g043030	45.055	91	44	3	3	87	1	91	4.06e-14	68.2
MS.gene98550.t1	MTR_5g075570	53.448	58	26	1	18	74	124	181	4.18e-14	69.3
MS.gene98550.t1	MTR_1g090290	59.322	59	22	2	18	74	113	171	5.58e-14	67.4
MS.gene98550.t1	MTR_8g013860	54.098	61	27	1	14	73	43	103	6.26e-14	67.4
MS.gene98550.t1	MTR_7g028925	57.143	56	22	1	18	73	29	82	7.70e-14	64.7
MS.gene98550.t1	MTR_3g110205	52.308	65	30	1	10	73	35	99	8.22e-14	67.0
MS.gene98550.t1	MTR_6g466130	50.000	78	28	3	14	80	59	136	8.27e-14	67.8
MS.gene98550.t1	MTR_7g046260	51.429	70	33	1	5	73	48	117	9.67e-14	67.4
MS.gene98550.t1	MTR_2g435590	56.923	65	26	2	10	73	89	152	1.02e-13	67.8
MS.gene98550.t1	MTR_8g006825	45.882	85	37	3	17	99	95	172	1.37e-13	66.6
MS.gene98550.t1	MTR_7g084370	63.158	57	20	1	17	72	41	97	1.47e-13	67.8
MS.gene98550.t1	MTR_1g014860	57.895	57	23	1	18	73	22	78	1.57e-13	66.6
MS.gene98550.t1	MTR_1g014820	51.562	64	30	1	11	73	20	83	1.66e-13	67.4
MS.gene98550.t1	MTR_1g014780	57.895	57	23	1	18	73	38	94	2.31e-13	66.6
MS.gene98550.t1	MTR_1g087920	59.649	57	22	1	18	73	77	133	2.57e-13	67.4
MS.gene98550.t1	MTR_1g014800	56.140	57	24	1	18	73	31	87	2.73e-13	66.2
MS.gene98550.t1	MTR_7g081815	51.899	79	33	3	17	93	60	135	2.90e-13	65.9
MS.gene98550.t1	MTR_1g069985	59.322	59	22	2	18	74	75	133	3.16e-13	65.9
MS.gene98550.t1	MTR_7g096810	56.579	76	31	2	7	80	2	77	3.20e-13	63.9
MS.gene98550.t1	MTR_7g081795	52.113	71	32	2	17	85	59	129	3.30e-13	65.5
MS.gene98550.t1	MTR_6g012970	50.000	74	34	2	2	72	20	93	3.35e-13	67.4
MS.gene98550.t1	MTR_1g070000	59.649	57	21	2	20	74	86	142	3.48e-13	65.9
MS.gene98550.t1	MTR_8g102800	56.140	57	24	1	18	73	37	93	4.75e-13	65.9
MS.gene98550.t1	MTR_6g465530	48.387	93	32	4	14	90	26	118	5.56e-13	65.1
MS.gene98550.t1	MTR_1g070015	57.627	59	23	2	18	74	84	142	5.99e-13	65.1
MS.gene98550.t1	MTR_7g011630	56.061	66	26	2	8	72	34	97	6.09e-13	66.6
MS.gene98550.t1	MTR_2g043020	34.722	144	71	5	3	123	1	144	9.62e-13	64.3
MS.gene98550.t1	MTR_7g081805	59.322	59	22	2	17	73	60	118	1.11e-12	64.3
MS.gene98550.t1	MTR_8g085960	56.140	57	24	1	17	72	24	80	1.20e-12	64.7
MS.gene98550.t1	MTR_4g008860	51.389	72	32	2	17	87	7	76	1.29e-12	63.9
MS.gene98550.t1	MTR_2g043040	47.297	74	35	2	4	73	2	75	1.41e-12	64.3
MS.gene98550.t1	MTR_6g465430	47.126	87	33	4	14	89	47	131	1.45e-12	64.7
MS.gene98550.t1	MTR_5g012910	53.226	62	28	1	13	73	23	84	1.46e-12	63.5
MS.gene98550.t1	MTR_6g465690	52.055	73	24	3	14	75	56	128	1.47e-12	64.7
MS.gene98550.t1	MTR_6g465510	48.750	80	30	3	10	78	22	101	1.65e-12	63.9
MS.gene98550.t1	MTR_3g106290	56.452	62	24	2	17	77	7	66	1.92e-12	63.2
MS.gene98550.t1	MTR_7g117690	43.836	73	40	1	2	73	12	84	2.03e-12	62.8
MS.gene98550.t1	MTR_4g054360	56.897	58	23	2	18	73	124	181	2.07e-12	64.3
MS.gene98550.t1	MTR_6g465460	41.818	110	44	5	14	103	47	156	2.15e-12	64.3
MS.gene98550.t1	MTR_1g070020	55.556	63	26	2	14	74	66	128	2.25e-12	63.5
MS.gene98550.t1	MTR_2g090235	57.895	57	23	1	18	73	218	274	2.67e-12	64.7
MS.gene98550.t1	MTR_6g466000	55.556	63	24	2	14	72	50	112	2.74e-12	63.5
MS.gene98550.t1	MTR_1g101600	57.143	56	23	1	18	72	41	96	3.06e-12	62.8
MS.gene98550.t1	MTR_6g465850	49.296	71	28	2	18	80	63	133	3.19e-12	63.9
MS.gene98550.t1	MTR_1g070045	52.857	70	30	3	8	74	55	124	3.27e-12	62.4
MS.gene98550.t1	MTR_4g102670	48.214	56	29	0	18	73	15	70	3.43e-12	62.0
MS.gene98550.t1	MTR_4g100650	52.632	57	26	1	18	73	74	130	3.52e-12	63.5
MS.gene98550.t1	MTR_8g090350	39.000	100	59	2	18	115	113	212	4.53e-12	63.5
MS.gene98550.t1	MTR_3g074130	57.895	57	23	1	18	73	150	206	5.08e-12	63.9
MS.gene98550.t1	MTR_8g468920	48.333	60	29	1	17	74	171	230	5.28e-12	63.9
MS.gene98550.t1	MTR_4g035430	50.877	57	27	1	18	73	32	88	7.21e-12	62.4
MS.gene98550.t1	MTR_3g102100	50.000	70	28	2	5	73	38	101	7.89e-12	61.2
MS.gene98550.t1	MTR_5g062700	57.895	57	23	1	18	73	173	229	8.00e-12	63.2
MS.gene98550.t1	MTR_4g111915	48.438	64	32	1	11	73	46	109	8.61e-12	60.5
MS.gene98550.t1	MTR_8g032610	54.237	59	26	1	17	74	26	84	9.32e-12	62.8
MS.gene98550.t1	MTR_4g054740	55.172	58	24	2	18	73	97	154	1.13e-11	62.0
MS.gene98550.t1	MTR_4g054860	56.140	57	23	2	19	73	132	188	1.31e-11	62.0
MS.gene98550.t1	MTR_1g074270	45.070	71	30	1	7	77	8	69	1.40e-11	59.3
MS.gene98550.t1	MTR_7g009410	46.667	60	30	1	17	74	167	226	1.69e-11	62.4
MS.gene98550.t1	MTR_4g112490	50.000	62	30	1	13	73	48	109	1.81e-11	60.8
MS.gene98550.t1	MTR_2g085015	36.134	119	59	6	18	126	47	158	2.05e-11	61.2
MS.gene98550.t1	MTR_8g027465	43.478	69	38	1	6	73	27	95	2.05e-11	60.1
MS.gene98550.t1	MTR_6g465420	44.828	87	35	4	14	89	47	131	2.64e-11	61.2
MS.gene98550.t1	MTR_5g016750	40.449	89	51	2	15	101	22	110	2.96e-11	60.1
MS.gene98550.t1	MTR_3g105510	50.847	59	28	1	15	72	34	92	2.99e-11	60.8
MS.gene98550.t1	MTR_7g092190	40.909	88	48	2	18	104	30	114	3.36e-11	61.2
MS.gene98550.t1	MTR_7g085810	52.632	57	26	1	17	72	29	85	3.72e-11	60.8
MS.gene98550.t1	MTR_6g465450	52.381	63	26	2	14	72	47	109	4.40e-11	60.5
MS.gene98550.t1	MTR_6g011490	43.038	79	43	1	17	93	163	241	5.27e-11	60.8
MS.gene98550.t1	MTR_4g082345	54.237	59	26	1	17	74	47	105	5.60e-11	60.5
MS.gene98550.t1	MTR_1g019110	52.632	57	26	1	18	73	44	100	7.48e-11	58.9
MS.gene98550.t1	MTR_1g040430	57.143	49	20	1	27	74	121	169	8.51e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98550.t1	AT1G53170	45.509	167	65	5	9	154	22	183	2.12e-24	94.7
MS.gene98550.t1	AT5G44210	41.071	168	72	5	14	154	29	196	3.65e-24	94.7
MS.gene98550.t1	AT1G28370	40.373	161	81	5	6	155	8	164	1.60e-23	92.0
MS.gene98550.t1	AT1G28370	40.373	161	81	5	6	155	46	202	1.66e-23	92.8
MS.gene98550.t1	AT3G15210	74.194	62	15	1	13	73	20	81	4.61e-23	92.4
MS.gene98550.t1	AT1G03800	65.079	63	21	1	13	74	48	110	3.17e-22	90.5
MS.gene98550.t1	AT1G50640	66.154	65	21	1	11	74	21	85	3.88e-22	89.7
MS.gene98550.t1	AT1G28360	65.625	64	21	1	13	75	7	70	6.27e-22	88.6
MS.gene98550.t1	AT5G43410	58.904	73	28	2	12	82	9	81	7.84e-19	79.0
MS.gene98550.t1	AT3G20310	63.077	65	23	1	11	74	20	84	2.79e-18	80.1
MS.gene98550.t1	AT5G51190	43.636	110	53	3	17	117	71	180	5.24e-18	79.0
MS.gene98550.t1	AT1G12980	60.606	66	25	1	11	75	50	115	7.16e-18	80.1
MS.gene98550.t1	AT5G61600	65.000	60	19	2	17	74	87	146	8.30e-18	78.6
MS.gene98550.t1	AT2G33710	60.606	66	25	1	9	73	61	126	9.43e-18	78.6
MS.gene98550.t1	AT2G33710	60.606	66	25	1	9	73	61	126	9.78e-18	78.2
MS.gene98550.t1	AT1G24590	63.934	61	21	1	16	75	56	116	1.27e-16	76.6
MS.gene98550.t1	AT5G13330	44.554	101	47	2	4	95	17	117	1.41e-16	74.7
MS.gene98550.t1	AT4G11140	46.237	93	46	2	17	105	86	178	2.67e-16	75.5
MS.gene98550.t1	AT5G61890	39.474	114	51	3	17	127	89	187	4.02e-16	74.3
MS.gene98550.t1	AT4G23750	57.377	61	25	1	15	74	119	179	6.19e-16	75.1
MS.gene98550.t1	AT4G23750	57.377	61	25	1	15	74	119	179	6.19e-16	75.1
MS.gene98550.t1	AT3G23230	56.923	65	26	2	14	76	16	80	1.12e-15	70.9
MS.gene98550.t1	AT1G15360	54.839	62	27	1	17	77	6	67	1.64e-15	71.6
MS.gene98550.t1	AT1G15360	54.839	62	27	1	17	77	6	67	1.64e-15	71.6
MS.gene98550.t1	AT5G47230	47.778	90	43	3	5	90	141	230	1.75e-15	73.2
MS.gene98550.t1	AT4G27950	52.308	65	30	1	11	74	111	175	1.89e-15	73.6
MS.gene98550.t1	AT4G17500	54.930	71	30	2	11	79	141	211	2.46e-15	72.4
MS.gene98550.t1	AT1G28160	51.190	84	36	3	14	92	35	118	3.05e-15	72.0
MS.gene98550.t1	AT5G47220	52.778	72	32	2	10	79	109	180	3.99e-15	71.6
MS.gene98550.t1	AT1G74930	50.000	68	33	1	7	73	10	77	4.39e-15	70.5
MS.gene98550.t1	AT2G47520	61.404	57	21	1	18	73	50	106	4.80e-15	70.1
MS.gene98550.t1	AT5G25390	52.941	68	30	2	17	82	6	73	8.86e-15	69.7
MS.gene98550.t1	AT1G12890	46.237	93	44	3	9	97	12	102	9.09e-15	70.1
MS.gene98550.t1	AT5G53290	55.932	59	25	1	17	74	124	182	1.06e-14	71.6
MS.gene98550.t1	AT5G25810	53.846	65	29	1	10	73	28	92	1.11e-14	70.1
MS.gene98550.t1	AT5G18560	61.404	57	21	1	17	72	54	110	1.15e-14	71.2
MS.gene98550.t1	AT4G32800	53.030	66	30	1	9	73	10	75	1.19e-14	69.7
MS.gene98550.t1	AT5G13910	53.623	69	31	1	5	72	7	75	1.40e-14	69.3
MS.gene98550.t1	AT3G61630	53.030	66	30	1	11	75	98	163	1.78e-14	70.5
MS.gene98550.t1	AT1G19210	53.125	64	29	1	11	73	5	68	2.77e-14	68.2
MS.gene98550.t1	AT2G46310	55.738	61	26	1	16	75	97	157	4.48e-14	69.3
MS.gene98550.t1	AT1G72360	56.897	58	24	1	17	73	24	81	5.66e-14	67.8
MS.gene98550.t1	AT4G17490	57.576	66	25	3	12	74	130	195	6.87e-14	68.6
MS.gene98550.t1	AT5G11590	48.750	80	33	2	2	73	28	107	7.05e-14	68.2
MS.gene98550.t1	AT3G16770	61.404	57	21	1	18	73	79	135	8.68e-14	67.8
MS.gene98550.t1	AT1G71450	56.140	57	24	1	18	73	24	80	1.03e-13	66.6
MS.gene98550.t1	AT2G25820	57.895	57	23	1	18	73	26	82	1.12e-13	67.4
MS.gene98550.t1	AT5G64750	65.957	47	16	0	27	73	195	241	1.37e-13	68.6
MS.gene98550.t1	AT2G44840	58.065	62	24	2	14	73	88	149	1.39e-13	67.0
MS.gene98550.t1	AT1G72360	56.897	58	24	1	17	73	73	130	1.41e-13	67.4
MS.gene98550.t1	AT2G35700	51.613	62	29	1	13	73	40	101	1.45e-13	66.6
MS.gene98550.t1	AT1G72360	56.897	58	24	1	17	73	75	132	1.50e-13	67.4
MS.gene98550.t1	AT4G16750	48.485	66	33	1	9	73	31	96	1.57e-13	66.2
MS.gene98550.t1	AT2G44940	57.895	57	23	1	18	73	100	156	1.69e-13	67.8
MS.gene98550.t1	AT5G07580	50.000	72	34	2	5	74	97	168	3.17e-13	65.9
MS.gene98550.t1	AT5G25390	51.471	68	28	3	17	82	6	70	3.41e-13	65.5
MS.gene98550.t1	AT5G19790	52.308	65	30	1	9	72	13	77	3.84e-13	66.2
MS.gene98550.t1	AT3G16280	54.386	57	25	1	18	73	61	117	4.60e-13	65.9
MS.gene98550.t1	AT1G36060	51.389	72	33	2	18	87	143	214	4.99e-13	66.6
MS.gene98550.t1	AT4G28140	56.140	57	24	1	18	73	143	199	5.22e-13	66.2
MS.gene98550.t1	AT3G60490	56.140	57	24	1	18	73	71	127	5.68e-13	65.9
MS.gene98550.t1	AT4G06746	50.794	63	30	1	12	73	30	92	6.02e-13	63.9
MS.gene98550.t1	AT2G36450	41.667	72	40	1	4	73	1	72	6.44e-13	64.7
MS.gene98550.t1	AT3G16280	54.386	57	25	1	18	73	79	135	6.54e-13	65.5
MS.gene98550.t1	AT4G25470	57.143	56	23	1	18	72	51	106	6.59e-13	65.1
MS.gene98550.t1	AT1G22190	56.923	65	26	2	11	73	75	139	7.01e-13	65.5
MS.gene98550.t1	AT4G13620	59.649	57	22	1	18	73	232	288	7.30e-13	66.2
MS.gene98550.t1	AT5G25190	48.718	78	34	2	17	88	7	84	9.33e-13	63.9
MS.gene98550.t1	AT4G25490	55.357	56	24	1	18	72	48	103	1.13e-12	64.3
MS.gene98550.t1	AT4G25480	55.357	56	24	1	18	72	51	106	1.19e-12	64.3
MS.gene98550.t1	AT3G23240	54.688	64	27	2	11	72	75	138	1.34e-12	64.3
MS.gene98550.t1	AT4G39780	52.308	65	30	1	10	73	85	149	1.45e-12	64.7
MS.gene98550.t1	AT1G04370	61.972	71	25	2	13	81	15	85	1.58e-12	62.4
MS.gene98550.t1	AT3G50260	41.667	84	46	2	4	84	7	90	1.68e-12	62.8
MS.gene98550.t1	AT4G31060	54.386	57	25	1	18	73	27	83	1.69e-12	63.5
MS.gene98550.t1	AT5G65130	56.140	57	24	1	18	73	113	169	2.15e-12	64.3
MS.gene98550.t1	AT5G65130	56.140	57	24	1	18	73	111	167	2.16e-12	64.3
MS.gene98550.t1	AT2G22200	56.140	57	24	1	18	73	71	127	2.54e-12	63.9
MS.gene98550.t1	AT2G20880	56.140	57	24	1	18	73	187	243	4.20e-12	63.9
MS.gene98550.t1	AT1G78080	54.688	64	27	2	18	79	152	215	4.68e-12	63.9
MS.gene98550.t1	AT2G31230	53.521	71	30	3	7	74	74	144	5.62e-12	62.8
MS.gene98550.t1	AT1G46768	52.632	57	26	1	18	73	31	87	7.64e-12	60.8
MS.gene98550.t1	AT1G46768	52.632	57	26	1	18	73	31	87	7.64e-12	60.8
MS.gene98550.t1	AT1G46768	52.632	57	26	1	18	73	31	87	9.21e-12	60.5
MS.gene98550.t1	AT1G01250	47.059	68	35	1	7	73	34	101	9.31e-12	61.6
MS.gene98550.t1	AT5G21960	53.448	58	26	1	17	73	6	63	1.03e-11	61.6
MS.gene98550.t1	AT5G51990	53.571	56	25	1	18	72	54	109	1.31e-11	61.6
MS.gene98550.t1	AT4G36900	52.632	57	26	1	18	73	30	86	1.43e-11	61.2
MS.gene98550.t1	AT2G23340	32.258	155	83	6	18	162	28	170	1.76e-11	60.5
MS.gene98550.t1	AT4G18450	53.030	66	28	3	12	74	104	169	2.23e-11	61.6
MS.gene98550.t1	AT2G40340	33.099	142	83	5	18	151	14	151	2.86e-11	61.2
MS.gene98550.t1	AT2G40340	33.099	142	83	5	18	151	14	151	2.86e-11	61.2
MS.gene98550.t1	AT2G40340	33.099	142	83	5	18	151	14	151	2.86e-11	61.2
MS.gene98550.t1	AT1G63030	50.794	63	27	2	14	72	23	85	3.08e-11	60.1
MS.gene98550.t1	AT1G63030	50.794	63	27	2	14	72	23	85	3.08e-11	60.1
MS.gene98550.t1	AT1G71130	47.368	76	34	2	6	75	67	142	3.12e-11	59.7
MS.gene98550.t1	AT2G40340	33.099	142	83	5	18	151	72	209	4.08e-11	61.2
MS.gene98550.t1	AT2G40340	33.803	142	82	5	18	151	79	216	4.76e-11	60.8
MS.gene98550.t1	AT3G57600	39.326	89	51	2	17	104	27	113	4.86e-11	60.5
MS.gene98550.t1	AT5G67190	52.632	57	26	1	18	73	21	77	5.66e-11	59.3
MS.gene98550.t1	AT1G68550	56.000	50	21	1	20	68	115	164	5.68e-11	60.8
MS.gene98550.t1	AT1G68550	56.000	50	21	1	20	68	115	164	5.68e-11	60.8

Find 47 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTTCAACCATTGTTTCT+AGG	0.157875	5.2:-72525536	MS.gene98550:CDS
TCTTCATCATCATTGAAATT+TGG	0.187223	5.2:+72525357	None:intergenic
AGACCTGTTGTTGCTGTTGA+AGG	0.328034	5.2:-72525495	MS.gene98550:CDS
AAATTGAGATCAATGTTTAA+AGG	0.377276	5.2:+72525390	None:intergenic
TTCTTCAACCATTGTTTCTA+GGG	0.392078	5.2:-72525535	MS.gene98550:CDS
GTAGAAGCATTGTAAGGTAT+TGG	0.399183	5.2:+72525603	None:intergenic
GGATCAATTGAAAGCAGAAC+TGG	0.417674	5.2:-72525817	MS.gene98550:CDS
TAGAAGCATTGTAAGGTATT+GGG	0.419441	5.2:+72525604	None:intergenic
TCATCATCATTGAAATTTGG+TGG	0.444198	5.2:+72525360	None:intergenic
GGGTAGCAGCGGGAAGTGAG+AGG	0.457004	5.2:+72525313	None:intergenic
GTAGTACTGCTGAAGCATCT+AGG	0.462215	5.2:-72525572	MS.gene98550:CDS
GAAGCATCTAGGGTTGTTGT+TGG	0.473611	5.2:-72525561	MS.gene98550:CDS
ATGAGATCGGTCTTCATTGG+CGG	0.475602	5.2:+72525288	None:intergenic
GGAATGAGATCGGTCTTCAT+TGG	0.477370	5.2:+72525285	None:intergenic
TCATTGAAATTTGGTGGAGG+GGG	0.487981	5.2:+72525366	None:intergenic
CAACCTTCAACAGCAACAAC+AGG	0.494426	5.2:+72525492	None:intergenic
GCTTCCTCACGCCGCGATAA+CGG	0.494924	5.2:+72525772	None:intergenic
TAATTCTCTTCAAGAACAAA+TGG	0.495431	5.2:+72525264	None:intergenic
AAGTGAGAGGCACAAGGTAG+TGG	0.502459	5.2:+72525326	None:intergenic
TGCTGCTGCATCATAAGCTC+GGG	0.507532	5.2:+72525662	None:intergenic
AGGTATTGGGAAGTTTGTAA+TGG	0.509964	5.2:+72525617	None:intergenic
TAGTACTGCTGAAGCATCTA+GGG	0.511702	5.2:-72525571	MS.gene98550:CDS
CAGCAGCAATTTCATTCCGT+GGG	0.517931	5.2:-72525647	MS.gene98550:CDS
TTGCTGCTGCATCATAAGCT+CGG	0.520694	5.2:+72525661	None:intergenic
AGATCGGTCTTCATTGGCGG+GGG	0.525237	5.2:+72525291	None:intergenic
ATCATTGAAATTTGGTGGAG+GGG	0.529330	5.2:+72525365	None:intergenic
ATCGGTCTTCATTGGCGGGG+GGG	0.538329	5.2:+72525293	None:intergenic
ACAGGTCTAGGAGTAGCAAC+AGG	0.542027	5.2:+72525510	None:intergenic
TGAGATCGGTCTTCATTGGC+GGG	0.546290	5.2:+72525289	None:intergenic
GCAGCAGCAATTTCATTCCG+TGG	0.546846	5.2:-72525648	MS.gene98550:CDS
TCATCATTGAAATTTGGTGG+AGG	0.547625	5.2:+72525363	None:intergenic
GTGCAGAAATTCGAGATCCA+TGG	0.562453	5.2:-72525734	MS.gene98550:CDS
ACTGGAGAAAAGTGCTGCAA+AGG	0.563060	5.2:-72525799	MS.gene98550:CDS
CATTGAAATTTGGTGGAGGG+GGG	0.564772	5.2:+72525367	None:intergenic
CATCATTGAAATTTGGTGGA+GGG	0.564934	5.2:+72525364	None:intergenic
AAGAACAAATGGAATGAGAT+CGG	0.566760	5.2:+72525275	None:intergenic
ATAGCAGTAGAAGCATTGTA+AGG	0.571059	5.2:+72525597	None:intergenic
TCAACAGCAACAACAGGTCT+AGG	0.571940	5.2:+72525498	None:intergenic
TTGTAATGGCATTGACCCCA+CGG	0.578940	5.2:+72525631	None:intergenic
AGGAAGCGAAGACACAAATA+CGG	0.620972	5.2:-72525756	MS.gene98550:CDS
AACAGGAACCCTAGAAACAA+TGG	0.629858	5.2:+72525527	None:intergenic
AAATCCGTTATCGCGGCGTG+AGG	0.633090	5.2:-72525776	MS.gene98550:CDS
AGCGGGAAGTGAGAGGCACA+AGG	0.648559	5.2:+72525320	None:intergenic
GAGATCGGTCTTCATTGGCG+GGG	0.651599	5.2:+72525290	None:intergenic
GATCGGTCTTCATTGGCGGG+GGG	0.651602	5.2:+72525292	None:intergenic
GCAAAGGAAATCCGTTATCG+CGG	0.686320	5.2:-72525783	MS.gene98550:CDS
AGCAGCAATTTCATTCCGTG+GGG	0.704528	5.2:-72525646	MS.gene98550:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTGAGATCAATGTTTAA+AGG	+	chr5.2:72525695-72525714	None:intergenic	20.0%
!	AAAAAAGAATGTGTATGGTT+AGG	-	chr5.2:72525371-72525390	MS.gene98550:CDS	25.0%
!	TAATTCTCTTCAAGAACAAA+TGG	+	chr5.2:72525821-72525840	None:intergenic	25.0%
!	TCTTCATCATCATTGAAATT+TGG	+	chr5.2:72525728-72525747	None:intergenic	25.0%
	AAGAACAAATGGAATGAGAT+CGG	+	chr5.2:72525810-72525829	None:intergenic	30.0%
	CATGGAAAAAAGAATGTGTA+TGG	-	chr5.2:72525366-72525385	MS.gene98550:CDS	30.0%
	TCATCATCATTGAAATTTGG+TGG	+	chr5.2:72525725-72525744	None:intergenic	30.0%
!!	TAGAAGCATTGTAAGGTATT+GGG	+	chr5.2:72525481-72525500	None:intergenic	30.0%
!!	TTCTTCAACCATTGTTTCTA+GGG	-	chr5.2:72525547-72525566	MS.gene98550:CDS	30.0%
!!!	CATACACATTCTTTTTTCCA+TGG	+	chr5.2:72525368-72525387	None:intergenic	30.0%
!	ATCATTGAAATTTGGTGGAG+GGG	+	chr5.2:72525720-72525739	None:intergenic	35.0%
!	CATCATTGAAATTTGGTGGA+GGG	+	chr5.2:72525721-72525740	None:intergenic	35.0%
!	CTTCTTCAACCATTGTTTCT+AGG	-	chr5.2:72525546-72525565	MS.gene98550:CDS	35.0%
!	TCATCATTGAAATTTGGTGG+AGG	+	chr5.2:72525722-72525741	None:intergenic	35.0%
!!	AGGTATTGGGAAGTTTGTAA+TGG	+	chr5.2:72525468-72525487	None:intergenic	35.0%
!!	ATAGCAGTAGAAGCATTGTA+AGG	+	chr5.2:72525488-72525507	None:intergenic	35.0%
!!	GTAGAAGCATTGTAAGGTAT+TGG	+	chr5.2:72525482-72525501	None:intergenic	35.0%
	AACAGGAACCCTAGAAACAA+TGG	+	chr5.2:72525558-72525577	None:intergenic	40.0%
	AGGAAGCGAAGACACAAATA+CGG	-	chr5.2:72525326-72525345	MS.gene98550:CDS	40.0%
	GGATCAATTGAAAGCAGAAC+TGG	-	chr5.2:72525265-72525284	MS.gene98550:CDS	40.0%
!	TAGTACTGCTGAAGCATCTA+GGG	-	chr5.2:72525511-72525530	MS.gene98550:CDS	40.0%
!	TCATTGAAATTTGGTGGAGG+GGG	+	chr5.2:72525719-72525738	None:intergenic	40.0%
	AGCAGCAATTTCATTCCGTG+GGG	-	chr5.2:72525436-72525455	MS.gene98550:CDS	45.0%
	ATGAGATCGGTCTTCATTGG+CGG	+	chr5.2:72525797-72525816	None:intergenic	45.0%
	CAACCTTCAACAGCAACAAC+AGG	+	chr5.2:72525593-72525612	None:intergenic	45.0%
	CAGCAGCAATTTCATTCCGT+GGG	-	chr5.2:72525435-72525454	MS.gene98550:CDS	45.0%
	GCAAAGGAAATCCGTTATCG+CGG	-	chr5.2:72525299-72525318	MS.gene98550:CDS	45.0%
	GGAATGAGATCGGTCTTCAT+TGG	+	chr5.2:72525800-72525819	None:intergenic	45.0%
	GTGCAGAAATTCGAGATCCA+TGG	-	chr5.2:72525348-72525367	MS.gene98550:CDS	45.0%
	TCAACAGCAACAACAGGTCT+AGG	+	chr5.2:72525587-72525606	None:intergenic	45.0%
	TTGCTGCTGCATCATAAGCT+CGG	+	chr5.2:72525424-72525443	None:intergenic	45.0%
!	AGACCTGTTGTTGCTGTTGA+AGG	-	chr5.2:72525587-72525606	MS.gene98550:CDS	45.0%
!	CATTGAAATTTGGTGGAGGG+GGG	+	chr5.2:72525718-72525737	None:intergenic	45.0%
!	GAAGCATCTAGGGTTGTTGT+TGG	-	chr5.2:72525521-72525540	MS.gene98550:CDS	45.0%
!	GTAGTACTGCTGAAGCATCT+AGG	-	chr5.2:72525510-72525529	MS.gene98550:CDS	45.0%
!!	ACTGGAGAAAAGTGCTGCAA+AGG	-	chr5.2:72525283-72525302	MS.gene98550:CDS	45.0%
!!	TTGTAATGGCATTGACCCCA+CGG	+	chr5.2:72525454-72525473	None:intergenic	45.0%
	ACAGGTCTAGGAGTAGCAAC+AGG	+	chr5.2:72525575-72525594	None:intergenic	50.0%
	GCAGCAGCAATTTCATTCCG+TGG	-	chr5.2:72525434-72525453	MS.gene98550:CDS	50.0%
	TGAGATCGGTCTTCATTGGC+GGG	+	chr5.2:72525796-72525815	None:intergenic	50.0%
	TGCTGCTGCATCATAAGCTC+GGG	+	chr5.2:72525423-72525442	None:intergenic	50.0%
!	AAGTGAGAGGCACAAGGTAG+TGG	+	chr5.2:72525759-72525778	None:intergenic	50.0%
	AAATCCGTTATCGCGGCGTG+AGG	-	chr5.2:72525306-72525325	MS.gene98550:CDS	55.0%
	AGATCGGTCTTCATTGGCGG+GGG	+	chr5.2:72525794-72525813	None:intergenic	55.0%
	GAGATCGGTCTTCATTGGCG+GGG	+	chr5.2:72525795-72525814	None:intergenic	55.0%
	ATCGGTCTTCATTGGCGGGG+GGG	+	chr5.2:72525792-72525811	None:intergenic	60.0%
	GATCGGTCTTCATTGGCGGG+GGG	+	chr5.2:72525793-72525812	None:intergenic	60.0%
	GCTTCCTCACGCCGCGATAA+CGG	+	chr5.2:72525313-72525332	None:intergenic	60.0%
!	AGCGGGAAGTGAGAGGCACA+AGG	+	chr5.2:72525765-72525784	None:intergenic	60.0%
	GGGTAGCAGCGGGAAGTGAG+AGG	+	chr5.2:72525772-72525791	None:intergenic	65.0%
	ATTGGCGGGGGGGTAGCAGC+GGG	+	chr5.2:72525782-72525801	None:intergenic	70.0%
	CATTGGCGGGGGGGTAGCAG+CGG	+	chr5.2:72525783-72525802	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	72525263	72525841	72525263	ID=MS.gene98550
chr5.2	mRNA	72525263	72525841	72525263	ID=MS.gene98550.t1;Parent=MS.gene98550
chr5.2	exon	72525263	72525841	72525263	ID=MS.gene98550.t1.exon1;Parent=MS.gene98550.t1
chr5.2	CDS	72525263	72525841	72525263	ID=cds.MS.gene98550.t1;Parent=MS.gene98550.t1

Gene Sequence

>MS.gene98550

ATGGATCAATTGAAAGCAGAACTGGAGAAAAGTGCTGCAAAGGAAATCCGTTATCGCGGCGTGAGGAAGCGAAGACACAAATACGGTGCAGAAATTCGAGATCCATGGAAAAAAGAATGTGTATGGTTAGGCACTTACGATACTGCAGAGCAAGCAGCCCGAGCTTATGATGCAGCAGCAATTTCATTCCGTGGGGTCAATGCCATTACAAACTTCCCAATACCTTACAATGCTTCTACTGCTATGAGTAGTACTGCTGAAGCATCTAGGGTTGTTGTTGGTTCTTCTTCAACCATTGTTTCTAGGGTTCCTGTTGCTACTCCTAGACCTGTTGTTGCTGTTGAAGGTTGTCACAGTGAATGTGATTCTTCTTCTGTTGTTGACGATGAAGATGAAGATTGCATTATCATTTCTTCTTCAATTCGAAAGCCTTTAAACATTGATCTCAATTTCCCCCCTCCACCAAATTTCAATGATGATGAAGAGATTCGCGCCACTACCTTGTGCCTCTCACTTCCCGCTGCTACCCCCCCGCCAATGAAGACCGATCTCATTCCATTTGTTCTTGAAGAGAATTAG

Protein sequence

>MS.gene98550.t1

MDQLKAELEKSAAKEIRYRGVRKRRHKYGAEIRDPWKKECVWLGTYDTAEQAARAYDAAAISFRGVNAITNFPIPYNASTAMSSTAEASRVVVGSSSTIVSRVPVATPRPVVAVEGCHSECDSSSVVDDEDEDCIIISSSIRKPLNIDLNFPPPPNFNDDEEIRATTLCLSLPAATPPPMKTDLIPFVLEEN