AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98728

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98728.t1 MTR_2g099030 99.471 378 2 0 1 378 30 407 0.0 784
MS.gene98728.t1 MTR_2g087780 46.825 378 189 7 1 374 23 392 3.25e-110 328
MS.gene98728.t1 MTR_7g490350 49.408 338 160 5 37 372 36 364 2.83e-106 317
MS.gene98728.t1 MTR_7g090300 48.910 321 154 4 53 372 53 364 6.68e-104 311
MS.gene98728.t1 MTR_7g490330 48.338 331 123 4 43 372 37 320 1.37e-101 303
MS.gene98728.t1 MTR_4g050190 43.351 376 204 5 1 374 20 388 1.83e-101 305
MS.gene98728.t1 MTR_5g091980 45.483 321 124 5 53 372 48 318 8.45e-85 261
MS.gene98728.t1 MTR_7g090320 38.056 360 202 6 21 367 26 377 2.49e-83 259
MS.gene98728.t1 MTR_7g090310 39.222 334 181 7 47 367 52 376 2.62e-82 256
MS.gene98728.t1 MTR_4g112670 33.533 334 193 4 41 373 27 332 9.97e-62 202
MS.gene98728.t1 MTR_4g112650 33.136 338 193 4 41 375 26 333 2.95e-59 195
MS.gene98728.t1 MTR_4g112630 33.731 335 178 5 41 371 26 320 1.48e-58 193
MS.gene98728.t1 MTR_2g058450 33.531 337 192 6 41 375 28 334 4.27e-55 184
MS.gene98728.t1 MTR_4g112620 29.518 332 167 5 41 371 30 295 7.30e-43 151
MS.gene98728.t1 MTR_8g074270 32.911 316 165 9 33 347 60 329 4.46e-42 151
MS.gene98728.t1 MTR_8g074170 34.317 271 148 6 33 303 60 300 4.08e-41 149
MS.gene98728.t1 MTR_8g074210 33.721 258 143 6 48 305 73 302 3.87e-39 143
MS.gene98728.t1 MTR_2g042370 29.329 283 189 6 95 376 84 356 4.70e-36 135
MS.gene98728.t1 MTR_2g058410 32.031 256 147 4 122 375 1 231 6.07e-34 126
MS.gene98728.t1 MTR_2g042430 26.899 316 209 6 64 378 75 369 3.36e-33 127
MS.gene98728.t1 MTR_2g042420 27.445 317 202 7 64 376 56 348 1.53e-31 122
MS.gene98728.t1 MTR_0003s0530 29.268 205 121 3 165 368 1 182 4.26e-25 101
MS.gene98728.t1 MTR_1g075865 41.905 105 61 0 170 274 7 111 1.27e-24 98.2
MS.gene98728.t1 MTR_8g074320 32.544 169 104 6 78 242 58 220 9.57e-20 87.4
MS.gene98728.t1 MTR_4g112840 38.776 98 60 0 198 295 63 160 1.19e-18 82.8
MS.gene98728.t1 MTR_2g058430 35.789 95 58 1 115 206 54 148 1.23e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98728.t1 AT3G59530 77.778 378 73 1 1 378 32 398 0.0 634
MS.gene98728.t1 AT3G59530 77.778 378 73 1 1 378 32 398 0.0 634
MS.gene98728.t1 AT3G59530 77.778 378 73 1 1 378 32 398 0.0 634
MS.gene98728.t1 AT5G22020 45.067 375 198 6 1 374 25 392 1.47e-106 319
MS.gene98728.t1 AT5G22020 45.067 375 198 6 1 374 25 392 1.47e-106 319
MS.gene98728.t1 AT5G22020 45.067 375 198 6 1 374 25 392 1.47e-106 319
MS.gene98728.t1 AT3G57030 49.371 318 149 5 53 367 56 364 9.88e-105 313
MS.gene98728.t1 AT1G08470 41.995 381 209 7 1 378 19 390 1.55e-100 303
MS.gene98728.t1 AT3G57020 41.250 320 174 5 51 367 51 359 4.35e-81 253
MS.gene98728.t1 AT3G57010 42.105 323 167 7 51 367 52 360 3.07e-78 246
MS.gene98728.t1 AT2G41300 41.667 312 167 5 59 367 84 383 1.91e-76 241
MS.gene98728.t1 AT3G57020 39.375 320 166 5 51 367 51 345 2.30e-75 238
MS.gene98728.t1 AT2G41290 39.939 328 176 8 51 367 49 366 2.06e-71 228
MS.gene98728.t1 AT1G74020 32.915 319 171 9 53 367 38 317 8.34e-50 171
MS.gene98728.t1 AT1G74010 33.129 326 178 9 44 367 28 315 8.05e-47 162
MS.gene98728.t1 AT1G74000 33.438 320 168 11 53 367 40 319 5.39e-46 160
MS.gene98728.t1 AT3G51440 30.746 335 183 9 54 378 70 365 6.45e-33 127
MS.gene98728.t1 AT3G51430 28.657 335 190 12 54 378 70 365 2.60e-31 122
MS.gene98728.t1 AT3G51430 28.060 335 190 12 54 378 70 363 5.76e-31 121
MS.gene98728.t1 AT3G51450 29.080 337 186 12 54 378 70 365 3.63e-30 119
MS.gene98728.t1 AT3G51420 26.727 333 190 12 54 375 70 359 4.15e-30 119

Find 94 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCGAAAATGAAGTATT+TGG 0.199215 2.1:-5464425 MS.gene98728:CDS
TTCTTCATGACTTGTTTATA+TGG 0.232247 2.1:+5464494 None:intergenic
CATTCCACTGTTCCATCTTT+AGG 0.236753 2.1:+5462983 None:intergenic
TGCATATTATGGTCTTCTTA+TGG 0.279511 2.1:-5463835 MS.gene98728:CDS
TTCTCATGTTTCCATTGCTT+TGG 0.287013 2.1:+5463921 None:intergenic
CAAGACAACATGAGTTGTTT+TGG 0.309300 2.1:+5463375 None:intergenic
TACATAGCAGATGCATATTA+TGG 0.318723 2.1:-5463846 MS.gene98728:CDS
AATTGGTGGTTTCGGTAAAA+AGG 0.329225 2.1:+5463299 None:intergenic
TCATTCATTCTTACGTTGTC+TGG 0.331202 2.1:+5462938 None:intergenic
AAACCTGCAATTGGTGGTTT+CGG 0.351201 2.1:+5463291 None:intergenic
ATAAACAAGTCATGAAGAAT+TGG 0.371511 2.1:-5464490 MS.gene98728:CDS
AAGAGGAGAAAGGAAAGCTT+TGG 0.372961 2.1:-5462679 MS.gene98728:CDS
TTCGAGATTTGCACTCCATT+AGG 0.378181 2.1:+5463337 None:intergenic
AACGTAAGAATGAATGAAAA+AGG 0.383654 2.1:-5462932 MS.gene98728:CDS
CTTCTTATGGTTGGACCAAA+TGG 0.385238 2.1:-5463822 MS.gene98728:CDS
AACACGACCATCGGCTAAAC+CGG 0.389147 2.1:+5464358 None:intergenic
AAGATCATTTGCAAAGAGAA+TGG 0.401336 2.1:+5463758 None:intergenic
TGGTAGGAGGATCATATCTA+AGG 0.402934 2.1:+5463395 None:intergenic
CCTAGTGGACCTAAATGAAA+AGG 0.405868 2.1:+5464554 None:intergenic
ATGACAGGCTAATGAAACTT+TGG 0.408963 2.1:-5463015 MS.gene98728:intron
TATTATGGTCTTCTTATGGT+TGG 0.409388 2.1:-5463831 MS.gene98728:CDS
GAATGTGTAGCCGACCTTCC+AGG 0.412071 2.1:-5462965 MS.gene98728:CDS
TTACCGAAACCACCAATTGC+AGG 0.427515 2.1:-5463294 MS.gene98728:intron
ATCTTGATATTCACAAGAAC+GGG 0.427957 2.1:-5463740 MS.gene98728:CDS
GCCTGTACGAATGAGCTTGT+TGG 0.431913 2.1:-5462819 MS.gene98728:CDS
CTAATGAAACTTTGGATAGA+AGG 0.434236 2.1:-5463007 MS.gene98728:CDS
CCATCGGCTAAACCGGTGTA+AGG 0.444345 2.1:+5464365 None:intergenic
GCAATAGATTGTTGTCGAAC+TGG 0.446574 2.1:-5462896 MS.gene98728:CDS
CTTACGTTGTCTGGAAATCC+TGG 0.449914 2.1:+5462947 None:intergenic
TGGTCGTGTTGTCCGATGGA+TGG 0.450319 2.1:-5464345 MS.gene98728:CDS
GGTGTAGCCAGTCCTCCATT+TGG 0.451029 2.1:+5463807 None:intergenic
AGATCATTTGCAAAGAGAAT+GGG 0.452460 2.1:+5463759 None:intergenic
GGTCGTGTTGTCCGATGGAT+GGG 0.455520 2.1:-5464344 MS.gene98728:CDS
CAAAACAACTCATGTTGTCT+TGG 0.456064 2.1:-5463374 MS.gene98728:CDS
TTAAGATTTGACAAAGAGAG+TGG 0.459619 2.1:-5463876 MS.gene98728:CDS
CCTTCAACATGGGTTGCCAA+TGG 0.466610 2.1:+5463786 None:intergenic
GCTGGTTAGTGAAGTTAAAG+AGG 0.470251 2.1:-5462696 MS.gene98728:CDS
TTGCAGTTGTCACATCCAAT+TGG 0.472198 2.1:-5464298 MS.gene98728:intron
ATTGCACTTCTTGATGATAA+CGG 0.476011 2.1:-5462764 MS.gene98728:CDS
ATGAGCAGACTCGGACTTCA+CGG 0.478710 2.1:-5464455 MS.gene98728:CDS
GAGAAAGGAAAGCTTTGGAT+TGG 0.479363 2.1:-5462674 MS.gene98728:CDS
TTTATATTGTTGGAAGGAGA+AGG 0.479834 2.1:-5463430 MS.gene98728:CDS
CTTTGTCAAATCTTAAACCA+AGG 0.491441 2.1:+5463883 None:intergenic
GTCACTTGAGTTCGATAACA+TGG 0.494746 2.1:-5464396 MS.gene98728:CDS
GCCAACAAGCTCATTCGTAC+AGG 0.497981 2.1:+5462818 None:intergenic
CGAAAATGAAGTATTTGGAC+CGG 0.503096 2.1:-5464420 MS.gene98728:CDS
AAAACATGTGGGCGTCCCCT+TGG 0.510216 2.1:-5463900 MS.gene98728:CDS
AGTCTGCTCATGTTGTCCTT+AGG 0.510827 2.1:+5464467 None:intergenic
TGGATAGAAGGTCCTAAAGA+TGG 0.515483 2.1:-5462995 MS.gene98728:CDS
GTCGTGTTGTCCGATGGATG+GGG 0.520866 2.1:-5464343 MS.gene98728:CDS
AGTGAAGTTAAAGAGGAGAA+AGG 0.523089 2.1:-5462689 MS.gene98728:CDS
CCATTGGCAACCCATGTTGA+AGG 0.526859 2.1:-5463786 MS.gene98728:CDS
TGGAGGACTGGCTACACCAT+TGG 0.527000 2.1:-5463802 MS.gene98728:CDS
ACAACTCATGTTGTCTTGGA+TGG 0.528253 2.1:-5463370 MS.gene98728:CDS
CTAGTGGACCTAAATGAAAA+GGG 0.529354 2.1:+5464555 None:intergenic
TTGTTACTCAAGACTTCTTG+AGG 0.540862 2.1:+5462872 None:intergenic
TTTGTCAAATCTTAAACCAA+GGG 0.542290 2.1:+5463884 None:intergenic
GAGCTTGTTGGCTAAAGCGA+TGG 0.543921 2.1:-5462807 MS.gene98728:CDS
TTGTTGGAAGGAGAAGGAAC+AGG 0.544523 2.1:-5463424 MS.gene98728:CDS
CCTTACACCGGTTTAGCCGA+TGG 0.545860 2.1:-5464365 MS.gene98728:CDS
GGTGCAACGTTGTGTTTCAC+AGG 0.546534 2.1:+5464515 None:intergenic
CCGATGGTCGTGTTGTCCGA+TGG 0.555843 2.1:-5464349 MS.gene98728:CDS
AAGTCTTGAGTAACAATCCA+TGG 0.565030 2.1:-5462865 MS.gene98728:CDS
GGTTGGACCAAATGGAGGAC+TGG 0.566119 2.1:-5463814 MS.gene98728:CDS
GAGTTCGATAACATGGGCCG+TGG 0.566184 2.1:-5464389 MS.gene98728:CDS
GTCTGGAAATCCTGGAAGGT+CGG 0.568065 2.1:+5462955 None:intergenic
AGCTTGTTGGCTAAAGCGAT+GGG 0.569618 2.1:-5462806 MS.gene98728:CDS
AAGGACAACATGAGCAGACT+CGG 0.574652 2.1:-5464464 MS.gene98728:CDS
GATCTTGATATTCACAAGAA+CGG 0.577423 2.1:-5463741 MS.gene98728:CDS
GACTGAGAAGATTTGCATGA+GGG 0.580450 2.1:-5463961 MS.gene98728:CDS
ATGGGCCGTGGCCCTTACAC+CGG 0.582691 2.1:-5464377 MS.gene98728:CDS
ACTCTACAACTCCAAAGCAA+TGG 0.585049 2.1:-5463932 MS.gene98728:CDS
CCATCGGACAACACGACCAT+CGG 0.587160 2.1:+5464349 None:intergenic
CTAAATTCATGTTCTCCTAG+TGG 0.592914 2.1:+5464539 None:intergenic
CTTATGGTTGGACCAAATGG+AGG 0.594581 2.1:-5463819 MS.gene98728:CDS
AGAAGGCAAAGTGATGAAGC+TGG 0.599296 2.1:-5462714 MS.gene98728:CDS
AGTCATGAAGAATTGGCCTA+AGG 0.608763 2.1:-5464483 MS.gene98728:CDS
GGACTGAGAAGATTTGCATG+AGG 0.612890 2.1:-5463962 MS.gene98728:CDS
CTAAACCGGTGTAAGGGCCA+CGG 0.618440 2.1:+5464372 None:intergenic
TTATCGAACTCAAGTGACTC+CGG 0.620156 2.1:+5464401 None:intergenic
TGGAAACATGAGAAAACATG+TGG 0.620861 2.1:-5463912 MS.gene98728:CDS
TGAGTAACAATCCATGGTTG+AGG 0.621036 2.1:-5462859 MS.gene98728:CDS
ACTGAGAAGATTTGCATGAG+GGG 0.622020 2.1:-5463960 MS.gene98728:CDS
GCTTGTGTCAGTGAAGAAGA+TGG 0.622137 2.1:+5463716 None:intergenic
GAAGTTCTTGAAGATCGAGA+AGG 0.628335 2.1:-5462731 MS.gene98728:CDS
CGTTGTCTGGAAATCCTGGA+AGG 0.631691 2.1:+5462951 None:intergenic
CATCGGCTAAACCGGTGTAA+GGG 0.633079 2.1:+5464366 None:intergenic
AAGTAAATACTCCTCAACCA+TGG 0.636253 2.1:+5462848 None:intergenic
TCGTGTTGTCCGATGGATGG+GGG 0.655214 2.1:-5464342 MS.gene98728:CDS
TTGTCAAATCTTAAACCAAG+GGG 0.656805 2.1:+5463885 None:intergenic
TCACTTGAGTTCGATAACAT+GGG 0.668236 2.1:-5464395 MS.gene98728:CDS
AGGTCCTAAAGATGGAACAG+TGG 0.678364 2.1:-5462987 MS.gene98728:CDS
TGGAAGGAGAAGGAACAGGT+AGG 0.689818 2.1:-5463420 MS.gene98728:CDS
GGAAACATGAGAAAACATGT+GGG 0.709710 2.1:-5463911 MS.gene98728:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAATATAAAATA+CGG + chr2.1:5463603-5463622 None:intergenic 0.0%
!! AAAAAATCTACAATAAAATT+TGG - chr2.1:5463616-5463635 MS.gene98728:intron 10.0%
!!! ACATAATATTTTAGACTTAA+TGG + chr2.1:5463157-5463176 None:intergenic 15.0%
!!! TAATGAATTAGTTATTTTGT+TGG + chr2.1:5464147-5464166 None:intergenic 15.0%
!! AATCTACAATAAAATTTGGA+CGG - chr2.1:5463620-5463639 MS.gene98728:intron 20.0%
!! CTTAGCTGAAATAAATAAAT+AGG + chr2.1:5463703-5463722 None:intergenic 20.0%
!! TCATTAAATTCTTTAATGAC+AGG - chr2.1:5464161-5464180 MS.gene98728:intron 20.0%
!!! TGAAACTTGGTATTTTTAAA+AGG - chr2.1:5463208-5463227 MS.gene98728:intron 20.0%
! AAACAATAACACTCATCATA+AGG + chr2.1:5463727-5463746 None:intergenic 25.0%
! AAATAAATAAATAGGATCCC+TGG + chr2.1:5463695-5463714 None:intergenic 25.0%
! AACGTAAGAATGAATGAAAA+AGG - chr2.1:5464259-5464278 MS.gene98728:intron 25.0%
! ATAAACAAGTCATGAAGAAT+TGG - chr2.1:5462701-5462720 MS.gene98728:CDS 25.0%
! ATCATTTGATCTCAATTCAA+CGG + chr2.1:5463566-5463585 None:intergenic 25.0%
! TGTAATACTTGAGGTTAAAT+GGG - chr2.1:5463985-5464004 MS.gene98728:intron 25.0%
! TTGTAATACTTGAGGTTAAA+TGG - chr2.1:5463984-5464003 MS.gene98728:intron 25.0%
! TTTGTCAAATCTTAAACCAA+GGG + chr2.1:5463310-5463329 None:intergenic 25.0%
!! GAATTCGAAAATGAAGTATT+TGG - chr2.1:5462766-5462785 MS.gene98728:CDS 25.0%
!! TACATTGTGATCTTTTATCT+TGG - chr2.1:5464026-5464045 MS.gene98728:intron 25.0%
!!! CACTTTTTTATATTGTTGGA+AGG - chr2.1:5463755-5463774 MS.gene98728:CDS 25.0%
!!! CGCTAAGGTTTTTTAAAAAA+TGG + chr2.1:5464061-5464080 None:intergenic 25.0%
!!! TGCACACTTTTTTATATTGT+TGG - chr2.1:5463751-5463770 MS.gene98728:CDS 25.0%
!!! TTCTTCATGACTTGTTTATA+TGG + chr2.1:5462700-5462719 None:intergenic 25.0%
AAGATCATTTGCAAAGAGAA+TGG + chr2.1:5463436-5463455 None:intergenic 30.0%
AGATCATTTGCAAAGAGAAT+GGG + chr2.1:5463435-5463454 None:intergenic 30.0%
ATCTTGATATTCACAAGAAC+GGG - chr2.1:5463451-5463470 MS.gene98728:intron 30.0%
CTAATGAAACTTTGGATAGA+AGG - chr2.1:5464184-5464203 MS.gene98728:intron 30.0%
CTTTGTCAAATCTTAAACCA+AGG + chr2.1:5463311-5463330 None:intergenic 30.0%
GATCTTGATATTCACAAGAA+CGG - chr2.1:5463450-5463469 MS.gene98728:intron 30.0%
TACATAGCAGATGCATATTA+TGG - chr2.1:5463345-5463364 MS.gene98728:CDS 30.0%
TATTATGGTCTTCTTATGGT+TGG - chr2.1:5463360-5463379 MS.gene98728:CDS 30.0%
TGCATATTATGGTCTTCTTA+TGG - chr2.1:5463356-5463375 MS.gene98728:CDS 30.0%
TTAAGATTTGACAAAGAGAG+TGG - chr2.1:5463315-5463334 MS.gene98728:CDS 30.0%
TTGTCAAATCTTAAACCAAG+GGG + chr2.1:5463309-5463328 None:intergenic 30.0%
TTTATATTGTTGGAAGGAGA+AGG - chr2.1:5463761-5463780 MS.gene98728:CDS 30.0%
! ATTGCACTTCTTGATGATAA+CGG - chr2.1:5464427-5464446 MS.gene98728:CDS 30.0%
! GAATGAAAAAGGACAGTTTT+GGG - chr2.1:5464270-5464289 MS.gene98728:intron 30.0%
! TGAATGAAAAAGGACAGTTT+TGG - chr2.1:5464269-5464288 MS.gene98728:intron 30.0%
!! GTTATTTTGTTGGACGAATT+TGG + chr2.1:5464137-5464156 None:intergenic 30.0%
AAGTAAATACTCCTCAACCA+TGG + chr2.1:5464346-5464365 None:intergenic 35.0%
AAGTCTTGAGTAACAATCCA+TGG - chr2.1:5464326-5464345 MS.gene98728:CDS 35.0%
AGTGAAGTTAAAGAGGAGAA+AGG - chr2.1:5464502-5464521 MS.gene98728:CDS 35.0%
AGTTAAAAACCTGCAATTGG+TGG + chr2.1:5463909-5463928 None:intergenic 35.0%
ATAAATAGGATCCCTGGATT+CGG + chr2.1:5463689-5463708 None:intergenic 35.0%
ATGACAGGCTAATGAAACTT+TGG - chr2.1:5464176-5464195 MS.gene98728:intron 35.0%
ATTGCAATGTGTCTCTCTAT+AGG + chr2.1:5463028-5463047 None:intergenic 35.0%
CAAAACAACTCATGTTGTCT+TGG - chr2.1:5463817-5463836 MS.gene98728:CDS 35.0%
CATTAGCATGAATGCACATA+TGG + chr2.1:5463190-5463209 None:intergenic 35.0%
CTAAATTCATGTTCTCCTAG+TGG + chr2.1:5462655-5462674 None:intergenic 35.0%
GCATTCATGCTAATGAAACT+TGG - chr2.1:5463195-5463214 MS.gene98728:intron 35.0%
GGAAACATGAGAAAACATGT+GGG - chr2.1:5463280-5463299 MS.gene98728:intron 35.0%
TCACTTGAGTTCGATAACAT+GGG - chr2.1:5462796-5462815 MS.gene98728:CDS 35.0%
TCATTCATTCTTACGTTGTC+TGG + chr2.1:5464256-5464275 None:intergenic 35.0%
TCTGCAACTTGTAATACTTG+AGG - chr2.1:5463976-5463995 MS.gene98728:intron 35.0%
TGCAGTTAAAAACCTGCAAT+TGG + chr2.1:5463912-5463931 None:intergenic 35.0%
TGGAAACATGAGAAAACATG+TGG - chr2.1:5463279-5463298 MS.gene98728:intron 35.0%
TTCTCATGTTTCCATTGCTT+TGG + chr2.1:5463273-5463292 None:intergenic 35.0%
TTGTTACTCAAGACTTCTTG+AGG + chr2.1:5464322-5464341 None:intergenic 35.0%
! AATTGGTGGTTTCGGTAAAA+AGG + chr2.1:5463895-5463914 None:intergenic 35.0%
! CAAGACAACATGAGTTGTTT+TGG + chr2.1:5463819-5463838 None:intergenic 35.0%
! CGAAAATGAAGTATTTGGAC+CGG - chr2.1:5462771-5462790 MS.gene98728:CDS 35.0%
! CTAGTGGACCTAAATGAAAA+GGG + chr2.1:5462639-5462658 None:intergenic 35.0%
! TCTTGATGATACTCACCAAT+TGG + chr2.1:5462911-5462930 None:intergenic 35.0%
!! AATGGGTTTTCCTTCAACAT+GGG + chr2.1:5463418-5463437 None:intergenic 35.0%
!!! ACAACATGAGTTGTTTTGGT+AGG + chr2.1:5463815-5463834 None:intergenic 35.0%
!!! GATGGTCTTGTTTTTCCTAA+TGG - chr2.1:5463839-5463858 MS.gene98728:CDS 35.0%
AAACCTTAGCGACACGAAAT+TGG - chr2.1:5464070-5464089 MS.gene98728:intron 40.0%
AAGAGGAGAAAGGAAAGCTT+TGG - chr2.1:5464512-5464531 MS.gene98728:CDS 40.0%
ACAACTCATGTTGTCTTGGA+TGG - chr2.1:5463821-5463840 MS.gene98728:CDS 40.0%
ACTCTACAACTCCAAAGCAA+TGG - chr2.1:5463259-5463278 MS.gene98728:intron 40.0%
ACTGAGAAGATTTGCATGAG+GGG - chr2.1:5463231-5463250 MS.gene98728:intron 40.0%
CATTCCACTGTTCCATCTTT+AGG + chr2.1:5464211-5464230 None:intergenic 40.0%
CTTCTTATGGTTGGACCAAA+TGG - chr2.1:5463369-5463388 MS.gene98728:CDS 40.0%
GAAGTTCTTGAAGATCGAGA+AGG - chr2.1:5464460-5464479 MS.gene98728:CDS 40.0%
GACTGAGAAGATTTGCATGA+GGG - chr2.1:5463230-5463249 MS.gene98728:intron 40.0%
GCAATAGATTGTTGTCGAAC+TGG - chr2.1:5464295-5464314 MS.gene98728:intron 40.0%
GCTGCAGTATGATGTTGAAA+CGG + chr2.1:5464104-5464123 None:intergenic 40.0%
GCTGGTTAGTGAAGTTAAAG+AGG - chr2.1:5464495-5464514 MS.gene98728:CDS 40.0%
GTCACTTGAGTTCGATAACA+TGG - chr2.1:5462795-5462814 MS.gene98728:CDS 40.0%
TAAATAGGATCCCTGGATTC+GGG + chr2.1:5463688-5463707 None:intergenic 40.0%
TGAGTAACAATCCATGGTTG+AGG - chr2.1:5464332-5464351 MS.gene98728:CDS 40.0%
TGGATAGAAGGTCCTAAAGA+TGG - chr2.1:5464196-5464215 MS.gene98728:intron 40.0%
TGGTAGGAGGATCATATCTA+AGG + chr2.1:5463799-5463818 None:intergenic 40.0%
TTATCGAACTCAAGTGACTC+CGG + chr2.1:5462793-5462812 None:intergenic 40.0%
TTCGAGATTTGCACTCCATT+AGG + chr2.1:5463857-5463876 None:intergenic 40.0%
TTGCAGTTGTCACATCCAAT+TGG - chr2.1:5462893-5462912 MS.gene98728:CDS 40.0%
! AAACCTGCAATTGGTGGTTT+CGG + chr2.1:5463903-5463922 None:intergenic 40.0%
! AGTCATGAAGAATTGGCCTA+AGG - chr2.1:5462708-5462727 MS.gene98728:CDS 40.0%
! CCTAGTGGACCTAAATGAAA+AGG + chr2.1:5462640-5462659 None:intergenic 40.0%
! CCTTTTCATTTAGGTCCACT+AGG - chr2.1:5462637-5462656 MS.gene98728:CDS 40.0%
!! GAATGGGTTTTCCTTCAACA+TGG + chr2.1:5463419-5463438 None:intergenic 40.0%
!! GAGAAAGGAAAGCTTTGGAT+TGG - chr2.1:5464517-5464536 MS.gene98728:CDS 40.0%
!!! ACATGAGTTGTTTTGGTAGG+AGG + chr2.1:5463812-5463831 None:intergenic 40.0%
!!! TGAAAAAGGACAGTTTTGGG+TGG - chr2.1:5464273-5464292 MS.gene98728:intron 40.0%
AAATAGGATCCCTGGATTCG+GGG + chr2.1:5463687-5463706 None:intergenic 45.0%
AAGGACAACATGAGCAGACT+CGG - chr2.1:5462727-5462746 MS.gene98728:CDS 45.0%
AGAAGGCAAAGTGATGAAGC+TGG - chr2.1:5464477-5464496 MS.gene98728:CDS 45.0%
AGGTCCTAAAGATGGAACAG+TGG - chr2.1:5464204-5464223 MS.gene98728:intron 45.0%
AGTCTGCTCATGTTGTCCTT+AGG + chr2.1:5462727-5462746 None:intergenic 45.0%
CTTACGTTGTCTGGAAATCC+TGG + chr2.1:5464247-5464266 None:intergenic 45.0%
CTTATGGTTGGACCAAATGG+AGG - chr2.1:5463372-5463391 MS.gene98728:CDS 45.0%
GCTTGTGTCAGTGAAGAAGA+TGG + chr2.1:5463478-5463497 None:intergenic 45.0%
GGACGGTCATCTCAATTCAA+CGG - chr2.1:5463637-5463656 MS.gene98728:intron 45.0%
GGACTGAGAAGATTTGCATG+AGG - chr2.1:5463229-5463248 MS.gene98728:intron 45.0%
GGCTATCAACAATCTGACTC+TGG + chr2.1:5463545-5463564 None:intergenic 45.0%
GGTTTCGGTAAAAAGGAGGA+AGG + chr2.1:5463888-5463907 None:intergenic 45.0%
TGGTGGTTTCGGTAAAAAGG+AGG + chr2.1:5463892-5463911 None:intergenic 45.0%
TTACCGAAACCACCAATTGC+AGG - chr2.1:5463897-5463916 MS.gene98728:CDS 45.0%
TTGTTGGAAGGAGAAGGAAC+AGG - chr2.1:5463767-5463786 MS.gene98728:CDS 45.0%
! AGTCCAATTTCGTGTCGCTA+AGG + chr2.1:5464076-5464095 None:intergenic 45.0%
!! AGCTTGTTGGCTAAAGCGAT+GGG - chr2.1:5464385-5464404 MS.gene98728:CDS 45.0%
ATGAGCAGACTCGGACTTCA+CGG - chr2.1:5462736-5462755 MS.gene98728:CDS 50.0%
CAAGTTGTTCCCCCATCCAT+CGG + chr2.1:5462861-5462880 None:intergenic 50.0%
CCATTGGCAACCCATGTTGA+AGG - chr2.1:5463405-5463424 MS.gene98728:CDS 50.0%
CGTTGTCTGGAAATCCTGGA+AGG + chr2.1:5464243-5464262 None:intergenic 50.0%
GATGGGGGAACAACTTGGTT+GGG - chr2.1:5462864-5462883 MS.gene98728:CDS 50.0%
GCCAACAAGCTCATTCGTAC+AGG + chr2.1:5464376-5464395 None:intergenic 50.0%
GCCTGTACGAATGAGCTTGT+TGG - chr2.1:5464372-5464391 MS.gene98728:CDS 50.0%
GGTGCAACGTTGTGTTTCAC+AGG + chr2.1:5462679-5462698 None:intergenic 50.0%
GTCTGGAAATCCTGGAAGGT+CGG + chr2.1:5464239-5464258 None:intergenic 50.0%
TGGAAGGAGAAGGAACAGGT+AGG - chr2.1:5463771-5463790 MS.gene98728:CDS 50.0%
! AACACGACCATCGGCTAAAC+CGG + chr2.1:5462836-5462855 None:intergenic 50.0%
! ATGCATTGATCCCCGAATCC+AGG - chr2.1:5463674-5463693 MS.gene98728:intron 50.0%
! CATCGGCTAAACCGGTGTAA+GGG + chr2.1:5462828-5462847 None:intergenic 50.0%
! CCTTCAACATGGGTTGCCAA+TGG + chr2.1:5463408-5463427 None:intergenic 50.0%
! TGCATTGATCCCCGAATCCA+GGG - chr2.1:5463675-5463694 MS.gene98728:intron 50.0%
!! GAGCTTGTTGGCTAAAGCGA+TGG - chr2.1:5464384-5464403 MS.gene98728:CDS 50.0%
AAAACATGTGGGCGTCCCCT+TGG - chr2.1:5463291-5463310 MS.gene98728:intron 55.0%
CCATCGGACAACACGACCAT+CGG + chr2.1:5462845-5462864 None:intergenic 55.0%
CGATGGATGGGGGAACAACT+TGG - chr2.1:5462859-5462878 MS.gene98728:CDS 55.0%
CTAAACCGGTGTAAGGGCCA+CGG + chr2.1:5462822-5462841 None:intergenic 55.0%
GAATGTGTAGCCGACCTTCC+AGG - chr2.1:5464226-5464245 MS.gene98728:intron 55.0%
GAGTTCGATAACATGGGCCG+TGG - chr2.1:5462802-5462821 MS.gene98728:CDS 55.0%
GGATGGGGGAACAACTTGGT+TGG - chr2.1:5462863-5462882 MS.gene98728:CDS 55.0%
GGTCGTGTTGTCCGATGGAT+GGG - chr2.1:5462847-5462866 MS.gene98728:CDS 55.0%
GGTGTAGCCAGTCCTCCATT+TGG + chr2.1:5463387-5463406 None:intergenic 55.0%
GGTTGGACCAAATGGAGGAC+TGG - chr2.1:5463377-5463396 MS.gene98728:CDS 55.0%
GTCGTGTTGTCCGATGGATG+GGG - chr2.1:5462848-5462867 MS.gene98728:CDS 55.0%
TCGTGTTGTCCGATGGATGG+GGG - chr2.1:5462849-5462868 MS.gene98728:CDS 55.0%
TGGTCGTGTTGTCCGATGGA+TGG - chr2.1:5462846-5462865 MS.gene98728:CDS 55.0%
! CCATCGGCTAAACCGGTGTA+AGG + chr2.1:5462829-5462848 None:intergenic 55.0%
!! CCTTACACCGGTTTAGCCGA+TGG - chr2.1:5462826-5462845 MS.gene98728:CDS 55.0%
!! TGGAGGACTGGCTACACCAT+TGG - chr2.1:5463389-5463408 MS.gene98728:CDS 55.0%
CCGATGGTCGTGTTGTCCGA+TGG - chr2.1:5462842-5462861 MS.gene98728:CDS 60.0%
ATGGGCCGTGGCCCTTACAC+CGG - chr2.1:5462814-5462833 MS.gene98728:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5462631 5464582 5462631 ID=MS.gene98728
chr2.1 mRNA 5462631 5464582 5462631 ID=MS.gene98728.t1;Parent=MS.gene98728
chr2.1 exon 5464299 5464582 5464299 ID=MS.gene98728.t1.exon1;Parent=MS.gene98728.t1
chr2.1 CDS 5464299 5464582 5464299 ID=cds.MS.gene98728.t1;Parent=MS.gene98728.t1
chr2.1 exon 5463699 5463983 5463699 ID=MS.gene98728.t1.exon2;Parent=MS.gene98728.t1
chr2.1 CDS 5463699 5463983 5463699 ID=cds.MS.gene98728.t1;Parent=MS.gene98728.t1
chr2.1 exon 5463295 5463462 5463295 ID=MS.gene98728.t1.exon3;Parent=MS.gene98728.t1
chr2.1 CDS 5463295 5463462 5463295 ID=cds.MS.gene98728.t1;Parent=MS.gene98728.t1
chr2.1 exon 5462631 5463030 5462631 ID=MS.gene98728.t1.exon4;Parent=MS.gene98728.t1
chr2.1 CDS 5462631 5463030 5462631 ID=cds.MS.gene98728.t1;Parent=MS.gene98728.t1
Gene Sequence

>MS.gene98728

ATGGACCCTTTTCATTTAGGTCCACTAGGAGAACATGAATTTAGACCTGTGAAACACAACGTTGCACCATATAAACAAGTCATGAAGAATTGGCCTAAGGACAACATGAGCAGACTCGGACTTCACGGAAAATTAGAATTCGAAAATGAAGTATTTGGACCGGAGTCACTTGAGTTCGATAACATGGGCCGTGGCCCTTACACCGGTTTAGCCGATGGTCGTGTTGTCCGATGGATGGGGGAACAACTTGGTTGGGAAACTTTTGCAGTTGTCACATCCAATTGGTGAGTATCATCAAGAAATTTGTAATCTAATTTGATTAAATCAGCTTTACAATACAACTCAAAATATGACATATAATTTTCATTCAACTATTATGATTCATGACTACGTGCCTATAGAGAGACACATTGCAATTATAATTGTTGAATGAAGATCAGACAATTCACATTTTGTGTTCGAAATATGAAATGTCTAAAATATGAAATGAAGATCTTCACGCAATTGCGTGATTGTATACACTCCATTAAGTCTAAAATATTATGTTTTTATATGTCCATATGTGCATTCATGCTAATGAAACTTGGTATTTTTAAAAGGACTGAGAAGATTTGCATGAGGGGAAATGACTCTACAACTCCAAAGCAATGGAAACATGAGAAAACATGTGGGCGTCCCCTTGGTTTAAGATTTGACAAAGAGAGTGGAGATTTATACATAGCAGATGCATATTATGGTCTTCTTATGGTTGGACCAAATGGAGGACTGGCTACACCATTGGCAACCCATGTTGAAGGAAAACCCATTCTCTTTGCAAATGATCTTGATATTCACAAGAACGGGTCCATCTTCTTCACTGACACAAGCACACGATACAATCGAGTGTAATTTCTTCTATTTCTATCTATTCACCAGAGTCAGATTGTTGATAGCCGTTGAATTGAGATCAAATGATATAGATTTAAAGTTCCGTATTTTATATTAAAAAAAATCTACAATAAAATTTGGACGGTCATCTCAATTCAACGGTTATCGATATGTTAATGCATTGATCCCCGAATCCAGGGATCCTATTTATTTATTTCAGCTAAGTCCTTATGATGAGTGTTATTGTTTGCAGTGCACACTTTTTTATATTGTTGGAAGGAGAAGGAACAGGTAGGCTCCTTAGATATGATCCTCCTACCAAAACAACTCATGTTGTCTTGGATGGTCTTGTTTTTCCTAATGGAGTGCAAATCTCGAAAGATCAATCCTTCCTCCTTTTTACCGAAACCACCAATTGCAGGTTTTTAACTGCATTAATTATTTCTTTATCAACATATCGTACTTATTTTGCATTTTCTCTGCAACTTGTAATACTTGAGGTTAAATGGGATGCAACTCAATTGTAGTTACATTGTGATCTTTTATCTTGGTGCTGCAAACCATTTTTTAAAAAACCTTAGCGACACGAAATTGGACTCTCTACCGTTTCAACATCATACTGCAGCTATAATGAATCCAAATTCGTCCAACAAAATAACTAATTCATTAAATTCTTTAATGACAGGCTAATGAAACTTTGGATAGAAGGTCCTAAAGATGGAACAGTGGAATGTGTAGCCGACCTTCCAGGATTTCCAGACAACGTAAGAATGAATGAAAAAGGACAGTTTTGGGTGGCAATAGATTGTTGTCGAACTGGACCTCAAGAAGTCTTGAGTAACAATCCATGGTTGAGGAGTATTTACTTTCGCTTGCCTGTACGAATGAGCTTGTTGGCTAAAGCGATGGGAATGAAAATGTACACAATGATTGCACTTCTTGATGATAACGGAAAGATTCTTGAAGTTCTTGAAGATCGAGAAGGCAAAGTGATGAAGCTGGTTAGTGAAGTTAAAGAGGAGAAAGGAAAGCTTTGGATTGGAACAGTAGCTCATAATCACATCTCCACCTTACCTTACCCTTAA
Protein sequence

>MS.gene98728.t1

MDPFHLGPLGEHEFRPVKHNVAPYKQVMKNWPKDNMSRLGLHGKLEFENEVFGPESLEFDNMGRGPYTGLADGRVVRWMGEQLGWETFAVVTSNWTEKICMRGNDSTTPKQWKHEKTCGRPLGLRFDKESGDLYIADAYYGLLMVGPNGGLATPLATHVEGKPILFANDLDIHKNGSIFFTDTSTRYNRVAHFFILLEGEGTGRLLRYDPPTKTTHVVLDGLVFPNGVQISKDQSFLLFTETTNCRLMKLWIEGPKDGTVECVADLPGFPDNVRMNEKGQFWVAIDCCRTGPQEVLSNNPWLRSIYFRLPVRMSLLAKAMGMKMYTMIALLDDNGKILEVLEDREGKVMKLVSEVKEEKGKLWIGTVAHNHISTLPYP