Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017555.t1 | XP_003629179.1 | 90.7 | 312 | 29 | 0 | 1 | 312 | 64 | 375 | 1.40E-166 | 595.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017555.t1 | Q9CAZ7 | 50.3 | 312 | 145 | 5 | 4 | 308 | 58 | 366 | 4.0e-85 | 316.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017555.t1 | G7LA64 | 90.7 | 312 | 29 | 0 | 1 | 312 | 64 | 375 | 1.0e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037812 | MS.gene017555 | PPI |
| MS.gene037810 | MS.gene017555 | PPI |
| MS.gene017555 | MS.gene23779 | PPI |
| MS.gene017555 | MS.gene61630 | PPI |
| MS.gene66625 | MS.gene017555 | PPI |
| MS.gene23780 | MS.gene017555 | PPI |
| MS.gene061292 | MS.gene017555 | PPI |
| MS.gene017558 | MS.gene017555 | PPI |
| MS.gene85273 | MS.gene017555 | PPI |
| MS.gene27212 | MS.gene017555 | PPI |
| MS.gene017555 | MS.gene017554 | PPI |
| MS.gene23775 | MS.gene017555 | PPI |
| MS.gene034366 | MS.gene017555 | PPI |
| MS.gene23776 | MS.gene017555 | PPI |
| MS.gene032181 | MS.gene017555 | PPI |
| MS.gene98728 | MS.gene017555 | PPI |
| MS.gene037809 | MS.gene017555 | PPI |
| MS.gene35719 | MS.gene017555 | PPI |
| MS.gene27210 | MS.gene017555 | PPI |
| MS.gene052008 | MS.gene017555 | PPI |
| MS.gene27211 | MS.gene017555 | PPI |
| MS.gene017556 | MS.gene017555 | PPI |
| MS.gene059296 | MS.gene017555 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017555.t1 | MTR_8g074170 | 90.705 | 312 | 29 | 0 | 1 | 312 | 64 | 375 | 0.0 | 582 |
| MS.gene017555.t1 | MTR_8g074270 | 86.538 | 312 | 42 | 0 | 1 | 312 | 64 | 375 | 0.0 | 553 |
| MS.gene017555.t1 | MTR_8g074210 | 83.654 | 312 | 51 | 0 | 1 | 312 | 64 | 375 | 0.0 | 535 |
| MS.gene017555.t1 | MTR_8g074320 | 63.576 | 151 | 51 | 1 | 32 | 178 | 72 | 222 | 4.40e-64 | 202 |
| MS.gene017555.t1 | MTR_1g075865 | 85.981 | 107 | 15 | 0 | 104 | 210 | 7 | 113 | 6.21e-63 | 196 |
| MS.gene017555.t1 | MTR_2g042370 | 35.117 | 299 | 183 | 7 | 8 | 298 | 57 | 352 | 2.45e-47 | 163 |
| MS.gene017555.t1 | MTR_2g042430 | 33.766 | 308 | 180 | 8 | 8 | 301 | 69 | 366 | 1.20e-46 | 161 |
| MS.gene017555.t1 | MTR_2g042420 | 33.557 | 298 | 188 | 8 | 8 | 298 | 50 | 344 | 8.15e-45 | 156 |
| MS.gene017555.t1 | MTR_4g050190 | 32.602 | 319 | 178 | 6 | 15 | 298 | 70 | 386 | 3.01e-44 | 155 |
| MS.gene017555.t1 | MTR_2g087780 | 29.940 | 334 | 196 | 6 | 1 | 298 | 59 | 390 | 1.50e-38 | 140 |
| MS.gene017555.t1 | MTR_7g090320 | 30.211 | 331 | 190 | 7 | 13 | 302 | 56 | 386 | 1.75e-38 | 140 |
| MS.gene017555.t1 | MTR_7g090310 | 30.303 | 330 | 190 | 7 | 13 | 302 | 56 | 385 | 4.28e-38 | 139 |
| MS.gene017555.t1 | MTR_2g099030 | 33.203 | 256 | 143 | 4 | 10 | 237 | 77 | 332 | 4.55e-37 | 137 |
| MS.gene017555.t1 | MTR_7g490330 | 34.866 | 261 | 141 | 9 | 12 | 245 | 44 | 302 | 1.01e-33 | 126 |
| MS.gene017555.t1 | MTR_4g112670 | 32.296 | 257 | 150 | 4 | 15 | 247 | 39 | 295 | 1.30e-33 | 126 |
| MS.gene017555.t1 | MTR_7g090300 | 32.530 | 249 | 147 | 4 | 13 | 240 | 51 | 299 | 8.47e-33 | 124 |
| MS.gene017555.t1 | MTR_8g074290 | 54.128 | 109 | 46 | 3 | 180 | 286 | 46 | 152 | 2.04e-32 | 118 |
| MS.gene017555.t1 | MTR_7g490350 | 33.186 | 226 | 130 | 4 | 15 | 219 | 53 | 278 | 8.26e-31 | 119 |
| MS.gene017555.t1 | MTR_4g112650 | 33.333 | 234 | 128 | 6 | 15 | 221 | 38 | 270 | 1.65e-28 | 112 |
| MS.gene017555.t1 | MTR_2g058450 | 36.364 | 176 | 108 | 3 | 53 | 224 | 99 | 274 | 1.03e-27 | 110 |
| MS.gene017555.t1 | MTR_4g112630 | 33.761 | 234 | 128 | 7 | 15 | 221 | 38 | 271 | 3.40e-27 | 108 |
| MS.gene017555.t1 | MTR_5g091980 | 32.314 | 229 | 134 | 4 | 15 | 222 | 48 | 276 | 1.19e-26 | 107 |
| MS.gene017555.t1 | MTR_0003s0530 | 40.458 | 131 | 77 | 1 | 100 | 229 | 2 | 132 | 2.08e-26 | 103 |
| MS.gene017555.t1 | MTR_2g058410 | 32.759 | 174 | 105 | 5 | 58 | 223 | 1 | 170 | 3.17e-19 | 85.1 |
| MS.gene017555.t1 | MTR_8g075500 | 76.471 | 51 | 12 | 0 | 29 | 79 | 170 | 220 | 6.56e-18 | 81.3 |
| MS.gene017555.t1 | MTR_4g112840 | 34.862 | 109 | 71 | 0 | 123 | 231 | 54 | 162 | 2.04e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017555.t1 | AT3G51430 | 50.321 | 312 | 145 | 5 | 4 | 308 | 58 | 366 | 1.46e-102 | 305 |
| MS.gene017555.t1 | AT3G51430 | 50.321 | 312 | 143 | 6 | 4 | 308 | 58 | 364 | 5.63e-101 | 301 |
| MS.gene017555.t1 | AT3G51420 | 47.756 | 312 | 153 | 5 | 4 | 308 | 58 | 366 | 3.25e-99 | 296 |
| MS.gene017555.t1 | AT3G51450 | 48.718 | 312 | 150 | 5 | 4 | 308 | 58 | 366 | 3.87e-98 | 294 |
| MS.gene017555.t1 | AT3G51440 | 48.397 | 312 | 151 | 5 | 4 | 308 | 58 | 366 | 1.16e-97 | 293 |
| MS.gene017555.t1 | AT5G22020 | 33.333 | 309 | 188 | 6 | 8 | 303 | 92 | 395 | 1.59e-42 | 151 |
| MS.gene017555.t1 | AT5G22020 | 33.333 | 309 | 188 | 6 | 8 | 303 | 92 | 395 | 1.59e-42 | 151 |
| MS.gene017555.t1 | AT5G22020 | 33.333 | 309 | 188 | 6 | 8 | 303 | 92 | 395 | 1.59e-42 | 151 |
| MS.gene017555.t1 | AT1G08470 | 32.692 | 260 | 164 | 4 | 55 | 303 | 130 | 389 | 2.86e-38 | 140 |
| MS.gene017555.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 2.58e-36 | 135 |
| MS.gene017555.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 2.58e-36 | 135 |
| MS.gene017555.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 2.58e-36 | 135 |
| MS.gene017555.t1 | AT3G57030 | 31.153 | 321 | 177 | 11 | 15 | 298 | 56 | 369 | 1.24e-35 | 132 |
| MS.gene017555.t1 | AT3G57020 | 28.571 | 308 | 194 | 8 | 15 | 302 | 53 | 354 | 1.44e-28 | 113 |
| MS.gene017555.t1 | AT3G57020 | 27.950 | 322 | 192 | 8 | 15 | 302 | 53 | 368 | 7.16e-28 | 111 |
| MS.gene017555.t1 | AT3G57010 | 27.576 | 330 | 197 | 8 | 15 | 309 | 54 | 376 | 1.09e-27 | 111 |
| MS.gene017555.t1 | AT2G41290 | 29.483 | 329 | 183 | 11 | 13 | 298 | 49 | 371 | 9.16e-27 | 108 |
| MS.gene017555.t1 | AT1G74010 | 34.091 | 220 | 122 | 6 | 15 | 212 | 37 | 255 | 4.53e-25 | 103 |
| MS.gene017555.t1 | AT2G41300 | 30.275 | 218 | 145 | 5 | 55 | 266 | 133 | 349 | 1.93e-23 | 99.8 |
| MS.gene017555.t1 | AT1G74020 | 32.727 | 220 | 126 | 5 | 15 | 212 | 38 | 257 | 1.07e-22 | 96.7 |
| MS.gene017555.t1 | AT1G74000 | 37.267 | 161 | 98 | 3 | 55 | 212 | 99 | 259 | 2.39e-21 | 92.8 |
Find 70 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACCAGTTAGTGATAATT+TGG | 0.099221 | 8.3:+28691035 | None:intergenic |
| GTTGCAGAGGGAAAATGTTT+TGG | 0.288224 | 8.3:-28693179 | MS.gene017555:CDS |
| TTCTTATACAAATTCAGATT+TGG | 0.295791 | 8.3:+28691114 | None:intergenic |
| TATTACAAAAGGGTATAAAA+TGG | 0.302630 | 8.3:+28690981 | None:intergenic |
| TTTATTGTTGTTTAAATTGC+AGG | 0.312356 | 8.3:+28690928 | None:intergenic |
| CCATCATAATGAATGTTATC+AGG | 0.354766 | 8.3:+28691561 | None:intergenic |
| GGATCATAGTAGTGTGTAGT+AGG | 0.366734 | 8.3:+28691057 | None:intergenic |
| GGTGAGACTGCAACTCCATT+AGG | 0.368711 | 8.3:+28692092 | None:intergenic |
| TGCTAAAATACCCTTTCATT+AGG | 0.375501 | 8.3:-28691167 | MS.gene017555:CDS |
| AAGAATAACGGTGAATGAAT+TGG | 0.380242 | 8.3:-28693087 | MS.gene017555:CDS |
| GATCCCAAATTATCACTAAC+TGG | 0.383412 | 8.3:-28691039 | MS.gene017555:CDS |
| TGCAAGAAATATTACATAGA+TGG | 0.390150 | 8.3:-28691630 | MS.gene017555:CDS |
| CTAACTGGTGGGATAAAGAT+TGG | 0.398842 | 8.3:-28691024 | MS.gene017555:CDS |
| ATGAATTGGTGGTTGAAGAT+TGG | 0.401749 | 8.3:-28693073 | MS.gene017555:CDS |
| CCACCAGTTAGTGATAATTT+GGG | 0.407324 | 8.3:+28691036 | None:intergenic |
| GCGTCGTATACCAAATCTTC+AGG | 0.409274 | 8.3:+28693155 | None:intergenic |
| AGGAGTTATCACTGTGGACT+TGG | 0.417990 | 8.3:-28691088 | MS.gene017555:CDS |
| CGGTGGAAGACCACTTGGTT+TGG | 0.418345 | 8.3:-28693042 | MS.gene017555:CDS |
| GGTTTCCTTCGAATACATCT+TGG | 0.418962 | 8.3:+28692186 | None:intergenic |
| GTACTTGTTAATGAGTTTGA+TGG | 0.425273 | 8.3:-28692305 | MS.gene017555:CDS |
| TGAATTGGTGGTTGAAGATT+GGG | 0.425527 | 8.3:-28693072 | MS.gene017555:CDS |
| TTTGGTATACGACGCTGATA+AGG | 0.436669 | 8.3:-28693147 | MS.gene017555:CDS |
| AGTGACCTCTACTTTCCTAA+TGG | 0.443237 | 8.3:-28692107 | MS.gene017555:CDS |
| ATACGACGCTGATAAGGGTT+TGG | 0.448748 | 8.3:-28693141 | MS.gene017555:CDS |
| TGAATGTTATCAGGCATGCC+AGG | 0.449090 | 8.3:+28691570 | None:intergenic |
| ATATCAAGACGTATTACAAA+AGG | 0.451664 | 8.3:+28690970 | None:intergenic |
| GTTTAAATTGCAGGTAGAGC+AGG | 0.457858 | 8.3:+28690937 | None:intergenic |
| AATCTGAATTTGTATAAGAA+TGG | 0.461591 | 8.3:-28691111 | MS.gene017555:CDS |
| GGACATGGGCAGTACTTGAT+TGG | 0.462993 | 8.3:-28691540 | MS.gene017555:CDS |
| CCCTTTCATTAGGAAGGCTC+TGG | 0.465331 | 8.3:-28691157 | MS.gene017555:CDS |
| TAAAATTCAAATTAACAGAT+GGG | 0.471020 | 8.3:-28692280 | MS.gene017555:CDS |
| CCTGATAACATTCATTATGA+TGG | 0.474172 | 8.3:-28691561 | MS.gene017555:CDS |
| GTTTATACTAGTTGTGAAGA+TGG | 0.487329 | 8.3:-28693119 | MS.gene017555:CDS |
| TTGGTATACGACGCTGATAA+GGG | 0.488468 | 8.3:-28693146 | MS.gene017555:CDS |
| TTAAAATTCAAATTAACAGA+TGG | 0.495758 | 8.3:-28692281 | MS.gene017555:CDS |
| TAACTGGTGGGATAAAGATT+GGG | 0.497109 | 8.3:-28691023 | MS.gene017555:CDS |
| AAAATACCCTTTCATTAGGA+AGG | 0.503520 | 8.3:-28691163 | MS.gene017555:CDS |
| TATGTCCAGTTCAAGAGAAA+AGG | 0.503928 | 8.3:+28691191 | None:intergenic |
| TATTGTTGCAGACGCAGATA+AGG | 0.512214 | 8.3:-28692997 | MS.gene017555:intron |
| GCCAGAGCCTTCCTAATGAA+AGG | 0.517627 | 8.3:+28691156 | None:intergenic |
| TTTATACTAGTTGTGAAGAT+GGG | 0.522006 | 8.3:-28693118 | MS.gene017555:CDS |
| AACACCGGTGGAAGACCACT+TGG | 0.523954 | 8.3:-28693047 | MS.gene017555:CDS |
| CTGAATTTGTATAAGAATGG+AGG | 0.542134 | 8.3:-28691108 | MS.gene017555:CDS |
| TGGGTGTATTAAAAGAATAA+CGG | 0.542363 | 8.3:-28693099 | MS.gene017555:CDS |
| TATCAAGACGTATTACAAAA+GGG | 0.542456 | 8.3:+28690971 | None:intergenic |
| CCAGAGCCTTCCTAATGAAA+GGG | 0.547179 | 8.3:+28691157 | None:intergenic |
| GTATTCGAAGGAAACCCTAA+TGG | 0.553097 | 8.3:-28692179 | MS.gene017555:CDS |
| AAAATTCAAATTAACAGATG+GGG | 0.555348 | 8.3:-28692279 | MS.gene017555:CDS |
| TTCATCAAAATACTCATACA+AGG | 0.557190 | 8.3:-28692216 | MS.gene017555:CDS |
| GTTATCACTGTGGACTTGGA+AGG | 0.570869 | 8.3:-28691084 | MS.gene017555:CDS |
| TCGAAGGAAACCCTAATGGT+AGG | 0.578998 | 8.3:-28692175 | MS.gene017555:CDS |
| CCAAATTATCACTAACTGGT+GGG | 0.579798 | 8.3:-28691035 | MS.gene017555:CDS |
| GAATGTTATCAGGCATGCCA+GGG | 0.588881 | 8.3:+28691571 | None:intergenic |
| CCCAAATTATCACTAACTGG+TGG | 0.591092 | 8.3:-28691036 | MS.gene017555:CDS |
| CAAACCAAGTGGTCTTCCAC+CGG | 0.592714 | 8.3:+28693043 | None:intergenic |
| AACATTCATTATGATGGACA+TGG | 0.593918 | 8.3:-28691555 | MS.gene017555:CDS |
| TATCTCCAAGATGTATTCGA+AGG | 0.595440 | 8.3:-28692191 | MS.gene017555:CDS |
| ATTGGGAATCACTTATACTG+TGG | 0.599269 | 8.3:-28691006 | MS.gene017555:CDS |
| GGATCTGAAAACGTTGCAGA+GGG | 0.601697 | 8.3:-28693191 | MS.gene017555:CDS |
| AATAACGGTGAATGAATTGG+TGG | 0.605239 | 8.3:-28693084 | MS.gene017555:CDS |
| AGGATCTGAAAACGTTGCAG+AGG | 0.644663 | 8.3:-28693192 | MS.gene017555:CDS |
| GTTGAAGATTGGGTTAACAC+CGG | 0.647511 | 8.3:-28693062 | MS.gene017555:CDS |
| GAAGATTGGGTTAACACCGG+TGG | 0.647988 | 8.3:-28693059 | MS.gene017555:CDS |
| ACATTCATTATGATGGACAT+GGG | 0.648960 | 8.3:-28691554 | MS.gene017555:CDS |
| CAACTCCATTAGGAAAGTAG+AGG | 0.650316 | 8.3:+28692102 | None:intergenic |
| CCATCAAAAGCCAAACCAAG+TGG | 0.660290 | 8.3:+28693032 | None:intergenic |
| GTACTTGATTGGAATAGCCA+CGG | 0.663511 | 8.3:-28691529 | MS.gene017555:intron |
| GGGGTTGATGTAGCTCATGA+TGG | 0.666426 | 8.3:-28692260 | MS.gene017555:CDS |
| TGTTATCAGGCATGCCAGGG+AGG | 0.693601 | 8.3:+28691574 | None:intergenic |
| GAATGGAGGAGTTATCACTG+TGG | 0.760629 | 8.3:-28691094 | MS.gene017555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAACATGATATATAT+AGG | - | chr8.3:28691600-28691619 | MS.gene017555:CDS | 10.0% |
| !! | TATATATATCATGTTTAAAT+TGG | + | chr8.3:28691601-28691620 | None:intergenic | 10.0% |
| !!! | AATTTTAAAGAATTTTATAC+TGG | + | chr8.3:28692140-28692159 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTGTTTTTTA+AGG | - | chr8.3:28691229-28691248 | MS.gene017555:intron | 10.0% |
| !! | ATAAAGAATTTAATATCCAA+CGG | - | chr8.3:28691372-28691391 | MS.gene017555:intron | 15.0% |
| !! | ATTAATTAATGATATGATAC+AGG | - | chr8.3:28691776-28691795 | MS.gene017555:intron | 15.0% |
| !! | CCAATTTAAACATATTATAT+AGG | - | chr8.3:28691421-28691440 | MS.gene017555:intron | 15.0% |
| !! | CCTATATAATATGTTTAAAT+TGG | + | chr8.3:28691424-28691443 | None:intergenic | 15.0% |
| !! | GTAACATTTAAATAAATGTT+AGG | - | chr8.3:28692379-28692398 | MS.gene017555:intron | 15.0% |
| !! | TAAAATTCAAATTAACAGAT+GGG | - | chr8.3:28691859-28691878 | MS.gene017555:intron | 15.0% |
| !! | TTAAAATTCAAATTAACAGA+TGG | - | chr8.3:28691858-28691877 | MS.gene017555:intron | 15.0% |
| !! | TTAATTAATGATATGATACA+GGG | - | chr8.3:28691777-28691796 | MS.gene017555:intron | 15.0% |
| !!! | AAAAAAATATTTTATACCGT+TGG | + | chr8.3:28691391-28691410 | None:intergenic | 15.0% |
| !!! | GTAACTGATTTAAATTTTAT+GGG | - | chr8.3:28692467-28692486 | MS.gene017555:intron | 15.0% |
| !!! | TATTTTTATATGTTCGTTTT+AGG | + | chr8.3:28691355-28691374 | None:intergenic | 15.0% |
| !!! | TGTAACTGATTTAAATTTTA+TGG | - | chr8.3:28692466-28692485 | MS.gene017555:intron | 15.0% |
| !!! | TTTTTAAGGTAAAAAAGTTA+AGG | - | chr8.3:28691243-28691262 | MS.gene017555:intron | 15.0% |
| !! | AAAAGAATCTACAAAAACAT+AGG | + | chr8.3:28691691-28691710 | None:intergenic | 20.0% |
| !! | AAAATTCAAATTAACAGATG+GGG | - | chr8.3:28691860-28691879 | MS.gene017555:intron | 20.0% |
| !! | AATCTGAATTTGTATAAGAA+TGG | - | chr8.3:28693028-28693047 | MS.gene017555:CDS | 20.0% |
| !! | ATTCTGAACAAAAAAATCAA+TGG | + | chr8.3:28691312-28691331 | None:intergenic | 20.0% |
| !! | GATAATACTATAAAATGTAG+TGG | + | chr8.3:28692430-28692449 | None:intergenic | 20.0% |
| !! | TTCTTATACAAATTCAGATT+TGG | + | chr8.3:28693028-28693047 | None:intergenic | 20.0% |
| !!! | AAAGTGCTAAATATATGTAT+TGG | - | chr8.3:28692879-28692898 | MS.gene017555:intron | 20.0% |
| !!! | AAATACCTTCTTTTTTTTGA+GGG | + | chr8.3:28691460-28691479 | None:intergenic | 20.0% |
| !!! | AGTAGTTTTGAAATAAATGT+TGG | - | chr8.3:28691167-28691186 | MS.gene017555:CDS | 20.0% |
| !!! | TATTACAAAAGGGTATAAAA+TGG | + | chr8.3:28693161-28693180 | None:intergenic | 20.0% |
| !!! | TTTCATTTTTCAAATGTTAC+TGG | + | chr8.3:28692326-28692345 | None:intergenic | 20.0% |
| ! | ACAAATGTAACATCCAATTT+AGG | - | chr8.3:28692814-28692833 | MS.gene017555:intron | 25.0% |
| ! | ATACTGGTATATAGTAAACA+AGG | + | chr8.3:28692124-28692143 | None:intergenic | 25.0% |
| ! | ATATCAAGACGTATTACAAA+AGG | + | chr8.3:28693172-28693191 | None:intergenic | 25.0% |
| ! | CCTTCAAAAAAAACCTAAAT+TGG | + | chr8.3:28692830-28692849 | None:intergenic | 25.0% |
| ! | TATCAAGACGTATTACAAAA+GGG | + | chr8.3:28693171-28693190 | None:intergenic | 25.0% |
| ! | TGCAAGAAATATTACATAGA+TGG | - | chr8.3:28692509-28692528 | MS.gene017555:intron | 25.0% |
| ! | TGGGTGTATTAAAAGAATAA+CGG | - | chr8.3:28691040-28691059 | MS.gene017555:CDS | 25.0% |
| ! | TGTTATTGTTTGTGTATTTC+TGG | - | chr8.3:28692921-28692940 | MS.gene017555:intron | 25.0% |
| ! | TTCATCAAAATACTCATACA+AGG | - | chr8.3:28691923-28691942 | MS.gene017555:intron | 25.0% |
| ! | TTTATACTAGTTGTGAAGAT+GGG | - | chr8.3:28691021-28691040 | MS.gene017555:CDS | 25.0% |
| !! | ATCAATCGACAATCATATTT+TGG | + | chr8.3:28691661-28691680 | None:intergenic | 25.0% |
| !!! | CAAATACCTTCTTTTTTTTG+AGG | + | chr8.3:28691461-28691480 | None:intergenic | 25.0% |
| !!! | CCAATTTAGGTTTTTTTTGA+AGG | - | chr8.3:28692827-28692846 | MS.gene017555:intron | 25.0% |
| !!! | GAATATGTTTTTTCTGCAAA+TGG | - | chr8.3:28691194-28691213 | MS.gene017555:CDS | 25.0% |
| AAAATACCCTTTCATTAGGA+AGG | - | chr8.3:28692976-28692995 | MS.gene017555:intron | 30.0% | |
| AACTCAAAAACCTACCATTA+GGG | + | chr8.3:28691977-28691996 | None:intergenic | 30.0% | |
| AAGAATAACGGTGAATGAAT+TGG | - | chr8.3:28691052-28691071 | MS.gene017555:CDS | 30.0% | |
| ACTTGTCACAATTTAATCCA+AGG | + | chr8.3:28691734-28691753 | None:intergenic | 30.0% | |
| CAAGGAAATAAACAACTTAC+AGG | + | chr8.3:28692106-28692125 | None:intergenic | 30.0% | |
| CCATAAATAGTCTCTATACA+AGG | - | chr8.3:28692850-28692869 | MS.gene017555:intron | 30.0% | |
| CCATCATAATGAATGTTATC+AGG | + | chr8.3:28692581-28692600 | None:intergenic | 30.0% | |
| CCTGATAACATTCATTATGA+TGG | - | chr8.3:28692578-28692597 | MS.gene017555:intron | 30.0% | |
| CCTTGTATAGAGACTATTTA+TGG | + | chr8.3:28692853-28692872 | None:intergenic | 30.0% | |
| CTGAATTTGTATAAGAATGG+AGG | - | chr8.3:28693031-28693050 | MS.gene017555:CDS | 30.0% | |
| GATATCCCTCAAAAAAAAGA+AGG | - | chr8.3:28691452-28691471 | MS.gene017555:intron | 30.0% | |
| GTTTATACTAGTTGTGAAGA+TGG | - | chr8.3:28691020-28691039 | MS.gene017555:CDS | 30.0% | |
| TAACTCAAAAACCTACCATT+AGG | + | chr8.3:28691978-28691997 | None:intergenic | 30.0% | |
| TGAATACTTCTAGATGTTGT+TGG | - | chr8.3:28692268-28692287 | MS.gene017555:CDS | 30.0% | |
| TGCTAAAATACCCTTTCATT+AGG | - | chr8.3:28692972-28692991 | MS.gene017555:intron | 30.0% | |
| ! | GTACTTGTTAATGAGTTTGA+TGG | - | chr8.3:28691834-28691853 | MS.gene017555:intron | 30.0% |
| ! | TTTTCTGTGCTTCCTTTTTT+TGG | + | chr8.3:28692536-28692555 | None:intergenic | 30.0% |
| !! | AACATTCATTATGATGGACA+TGG | - | chr8.3:28692584-28692603 | MS.gene017555:intron | 30.0% |
| !! | AAGACCACAAAATTTTGATC+TGG | + | chr8.3:28692071-28692090 | None:intergenic | 30.0% |
| !! | ACATTCATTATGATGGACAT+GGG | - | chr8.3:28692585-28692604 | MS.gene017555:intron | 30.0% |
| !! | CTAGAAGTATTCAAGTAACA+TGG | + | chr8.3:28692261-28692280 | None:intergenic | 30.0% |
| !!! | AGAGTTGTCTTTTTTGTTGA+TGG | + | chr8.3:28692005-28692024 | None:intergenic | 30.0% |
| !!! | ATTTTGGCTAATCATACATG+AGG | + | chr8.3:28691645-28691664 | None:intergenic | 30.0% |
| !!! | TGAGTATTTTGATGAAGCAA+CGG | + | chr8.3:28691919-28691938 | None:intergenic | 30.0% |
| !!! | TTTCTGTGCTTCCTTTTTTT+GGG | + | chr8.3:28692535-28692554 | None:intergenic | 30.0% |
| AAGATTAATCTCTGCAGTTG+TGG | - | chr8.3:28692733-28692752 | MS.gene017555:intron | 35.0% | |
| AATAACGGTGAATGAATTGG+TGG | - | chr8.3:28691055-28691074 | MS.gene017555:CDS | 35.0% | |
| AGATAAACCGAAACAAATCC+TGG | + | chr8.3:28691280-28691299 | None:intergenic | 35.0% | |
| AGATTAATCTCTGCAGTTGT+GGG | - | chr8.3:28692734-28692753 | MS.gene017555:intron | 35.0% | |
| ATTGGGAATCACTTATACTG+TGG | - | chr8.3:28693133-28693152 | MS.gene017555:CDS | 35.0% | |
| CCAAATTATCACTAACTGGT+GGG | - | chr8.3:28693104-28693123 | MS.gene017555:CDS | 35.0% | |
| CCACCAGTTAGTGATAATTT+GGG | + | chr8.3:28693106-28693125 | None:intergenic | 35.0% | |
| GATAAACCGAAACAAATCCT+GGG | + | chr8.3:28691279-28691298 | None:intergenic | 35.0% | |
| GATCCCAAATTATCACTAAC+TGG | - | chr8.3:28693100-28693119 | MS.gene017555:CDS | 35.0% | |
| TAACTGGTGGGATAAAGATT+GGG | - | chr8.3:28693116-28693135 | MS.gene017555:CDS | 35.0% | |
| TACATAGATGGCCCAAAAAA+AGG | - | chr8.3:28692521-28692540 | MS.gene017555:intron | 35.0% | |
| TATCTCCAAGATGTATTCGA+AGG | - | chr8.3:28691948-28691967 | MS.gene017555:intron | 35.0% | |
| TATGTCCAGTTCAAGAGAAA+AGG | + | chr8.3:28692951-28692970 | None:intergenic | 35.0% | |
| TCTCTCGTGTTAAAAATCCT+TGG | - | chr8.3:28691714-28691733 | MS.gene017555:intron | 35.0% | |
| ! | ATGAATTGGTGGTTGAAGAT+TGG | - | chr8.3:28691066-28691085 | MS.gene017555:CDS | 35.0% |
| ! | CTCACCAGATCAAAATTTTG+TGG | - | chr8.3:28692064-28692083 | MS.gene017555:CDS | 35.0% |
| ! | TGAATTGGTGGTTGAAGATT+GGG | - | chr8.3:28691067-28691086 | MS.gene017555:CDS | 35.0% |
| !! | ATGTTTTGGACCTGAAGATT+TGG | - | chr8.3:28690974-28690993 | MS.gene017555:CDS | 35.0% |
| !! | ATTGTTTGTGTATTTCTGGC+AGG | - | chr8.3:28692925-28692944 | MS.gene017555:intron | 35.0% |
| !! | ATTTTATGGGCTAATGTTGC+AGG | - | chr8.3:28692480-28692499 | MS.gene017555:intron | 35.0% |
| !!! | TAGAGTTTTGTTGTTCCTTG+TGG | - | chr8.3:28692695-28692714 | MS.gene017555:intron | 35.0% |
| AGTGACATCAAATGATACCG+TGG | + | chr8.3:28692630-28692649 | None:intergenic | 40.0% | |
| AGTGACCTCTACTTTCCTAA+TGG | - | chr8.3:28692032-28692051 | MS.gene017555:intron | 40.0% | |
| CAACTCCATTAGGAAAGTAG+AGG | + | chr8.3:28692040-28692059 | None:intergenic | 40.0% | |
| CCCAAATTATCACTAACTGG+TGG | - | chr8.3:28693103-28693122 | MS.gene017555:CDS | 40.0% | |
| CCCACCAGTTAGTGATAATT+TGG | + | chr8.3:28693107-28693126 | None:intergenic | 40.0% | |
| CTAACTGGTGGGATAAAGAT+TGG | - | chr8.3:28693115-28693134 | MS.gene017555:CDS | 40.0% | |
| GGATCATAGTAGTGTGTAGT+AGG | + | chr8.3:28693085-28693104 | None:intergenic | 40.0% | |
| GGTTTCCTTCGAATACATCT+TGG | + | chr8.3:28691956-28691975 | None:intergenic | 40.0% | |
| GTACTTGATTGGAATAGCCA+CGG | - | chr8.3:28692610-28692629 | MS.gene017555:intron | 40.0% | |
| GTATTCGAAGGAAACCCTAA+TGG | - | chr8.3:28691960-28691979 | MS.gene017555:intron | 40.0% | |
| GTTAAGGTAATTACTGTCCC+AGG | - | chr8.3:28691259-28691278 | MS.gene017555:intron | 40.0% | |
| GTTGAAGATTGGGTTAACAC+CGG | - | chr8.3:28691077-28691096 | MS.gene017555:CDS | 40.0% | |
| TATTGTTGCAGACGCAGATA+AGG | - | chr8.3:28691142-28691161 | MS.gene017555:CDS | 40.0% | |
| TTGGTATACGACGCTGATAA+GGG | - | chr8.3:28690993-28691012 | MS.gene017555:CDS | 40.0% | |
| TTTGGTATACGACGCTGATA+AGG | - | chr8.3:28690992-28691011 | MS.gene017555:CDS | 40.0% | |
| ! | GTTGCAGAGGGAAAATGTTT+TGG | - | chr8.3:28690960-28690979 | MS.gene017555:CDS | 40.0% |
| ! | TACTGTCCCAGGATTTGTTT+CGG | - | chr8.3:28691270-28691289 | MS.gene017555:intron | 40.0% |
| !! | TCGAGTTGAATATCACCACA+AGG | + | chr8.3:28692713-28692732 | None:intergenic | 40.0% |
| !!! | GGTTTGGCTTTTGATGGAAA+TGG | - | chr8.3:28691113-28691132 | MS.gene017555:CDS | 40.0% |
| AGGAGTTATCACTGTGGACT+TGG | - | chr8.3:28693051-28693070 | MS.gene017555:CDS | 45.0% | |
| AGGATCTGAAAACGTTGCAG+AGG | - | chr8.3:28690947-28690966 | MS.gene017555:CDS | 45.0% | |
| ATACGACGCTGATAAGGGTT+TGG | - | chr8.3:28690998-28691017 | MS.gene017555:CDS | 45.0% | |
| CCAGAGCCTTCCTAATGAAA+GGG | + | chr8.3:28692985-28693004 | None:intergenic | 45.0% | |
| CCATCAAAAGCCAAACCAAG+TGG | + | chr8.3:28691110-28691129 | None:intergenic | 45.0% | |
| GAATGGAGGAGTTATCACTG+TGG | - | chr8.3:28693045-28693064 | MS.gene017555:CDS | 45.0% | |
| GAATGTTATCAGGCATGCCA+GGG | + | chr8.3:28692571-28692590 | None:intergenic | 45.0% | |
| GCGTCGTATACCAAATCTTC+AGG | + | chr8.3:28690987-28691006 | None:intergenic | 45.0% | |
| GGATCTGAAAACGTTGCAGA+GGG | - | chr8.3:28690948-28690967 | MS.gene017555:CDS | 45.0% | |
| GTTATCACTGTGGACTTGGA+AGG | - | chr8.3:28693055-28693074 | MS.gene017555:CDS | 45.0% | |
| TCGAAGGAAACCCTAATGGT+AGG | - | chr8.3:28691964-28691983 | MS.gene017555:intron | 45.0% | |
| TGAATGTTATCAGGCATGCC+AGG | + | chr8.3:28692572-28692591 | None:intergenic | 45.0% | |
| !! | GAAAAGTTTTGTGACCTCCC+TGG | - | chr8.3:28692551-28692570 | MS.gene017555:intron | 45.0% |
| !!! | CCACTTGGTTTGGCTTTTGA+TGG | - | chr8.3:28691107-28691126 | MS.gene017555:CDS | 45.0% |
| CAAACCAAGTGGTCTTCCAC+CGG | + | chr8.3:28691099-28691118 | None:intergenic | 50.0% | |
| CAGTTGTGGGCAGAAGATAC+CGG | - | chr8.3:28692747-28692766 | MS.gene017555:intron | 50.0% | |
| CCCTTTCATTAGGAAGGCTC+TGG | - | chr8.3:28692982-28693001 | MS.gene017555:intron | 50.0% | |
| GAAGATTGGGTTAACACCGG+TGG | - | chr8.3:28691080-28691099 | MS.gene017555:CDS | 50.0% | |
| GCCAGAGCCTTCCTAATGAA+AGG | + | chr8.3:28692986-28693005 | None:intergenic | 50.0% | |
| GGACATGGGCAGTACTTGAT+TGG | - | chr8.3:28692599-28692618 | MS.gene017555:intron | 50.0% | |
| GGTGAGACTGCAACTCCATT+AGG | + | chr8.3:28692050-28692069 | None:intergenic | 50.0% | |
| TCCCATTTGTGTGTGTGAGC+CGG | + | chr8.3:28692769-28692788 | None:intergenic | 50.0% | |
| ! | ACCGGCTCACACACACAAAT+GGG | - | chr8.3:28692765-28692784 | MS.gene017555:intron | 50.0% |
| ! | GCAGGCCTTTTCTCTTGAAC+TGG | - | chr8.3:28692943-28692962 | MS.gene017555:intron | 50.0% |
| !! | GGGGTTGATGTAGCTCATGA+TGG | - | chr8.3:28691879-28691898 | MS.gene017555:intron | 50.0% |
| !! | TACCGGCTCACACACACAAA+TGG | - | chr8.3:28692764-28692783 | MS.gene017555:intron | 50.0% |
| AACACCGGTGGAAGACCACT+TGG | - | chr8.3:28691092-28691111 | MS.gene017555:CDS | 55.0% | |
| CGGTGGAAGACCACTTGGTT+TGG | - | chr8.3:28691097-28691116 | MS.gene017555:CDS | 55.0% | |
| TGTTATCAGGCATGCCAGGG+AGG | + | chr8.3:28692568-28692587 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28690939 | 28693222 | 28690939 | ID=MS.gene017555 |
| chr8.3 | mRNA | 28690939 | 28693222 | 28690939 | ID=MS.gene017555.t1;Parent=MS.gene017555 |
| chr8.3 | exon | 28692998 | 28693222 | 28692998 | ID=MS.gene017555.t1.exon1;Parent=MS.gene017555.t1 |
| chr8.3 | CDS | 28692998 | 28693222 | 28692998 | ID=cds.MS.gene017555.t1;Parent=MS.gene017555.t1 |
| chr8.3 | exon | 28692056 | 28692363 | 28692056 | ID=MS.gene017555.t1.exon2;Parent=MS.gene017555.t1 |
| chr8.3 | CDS | 28692056 | 28692363 | 28692056 | ID=cds.MS.gene017555.t1;Parent=MS.gene017555.t1 |
| chr8.3 | exon | 28691530 | 28691659 | 28691530 | ID=MS.gene017555.t1.exon3;Parent=MS.gene017555.t1 |
| chr8.3 | CDS | 28691530 | 28691659 | 28691530 | ID=cds.MS.gene017555.t1;Parent=MS.gene017555.t1 |
| chr8.3 | exon | 28690939 | 28691214 | 28690939 | ID=MS.gene017555.t1.exon4;Parent=MS.gene017555.t1 |
| chr8.3 | CDS | 28690939 | 28691214 | 28690939 | ID=cds.MS.gene017555.t1;Parent=MS.gene017555.t1 |
| Gene Sequence |
| Protein sequence |
