AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037809


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037809.t1 MTR_8g074210 57.067 375 150 5 21 395 11 374 9.68e-149 426
MS.gene037809.t1 MTR_8g074170 56.533 375 152 5 21 395 11 374 3.01e-147 422
MS.gene037809.t1 MTR_8g074270 56.267 375 153 5 21 395 11 374 2.17e-146 420
MS.gene037809.t1 MTR_8g074320 81.068 206 18 4 56 260 37 222 2.84e-112 328
MS.gene037809.t1 MTR_8g074290 96.364 110 2 1 261 370 45 152 3.12e-72 223
MS.gene037809.t1 MTR_2g042430 33.945 327 176 9 84 396 71 371 1.31e-49 172
MS.gene037809.t1 MTR_2g042370 33.227 313 176 8 84 382 59 352 7.76e-48 167
MS.gene037809.t1 MTR_1g075865 68.224 107 33 1 186 292 7 112 1.13e-47 159
MS.gene037809.t1 MTR_2g042420 32.692 312 178 10 84 382 52 344 3.09e-46 162
MS.gene037809.t1 MTR_4g050190 29.744 390 237 11 26 382 1 386 1.65e-42 153
MS.gene037809.t1 MTR_2g087780 32.817 323 187 8 26 322 4 322 1.09e-39 146
MS.gene037809.t1 MTR_2g099030 35.165 273 144 7 84 333 77 339 1.24e-37 140
MS.gene037809.t1 MTR_7g490330 36.122 263 144 8 86 328 44 302 2.67e-36 135
MS.gene037809.t1 MTR_7g490350 34.130 293 155 10 28 300 2 276 9.14e-35 132
MS.gene037809.t1 MTR_7g090300 32.407 324 177 11 89 382 53 364 2.31e-34 131
MS.gene037809.t1 MTR_7g090310 30.409 342 200 9 79 386 48 385 4.77e-33 128
MS.gene037809.t1 MTR_7g090320 30.723 332 193 9 89 386 58 386 5.20e-33 127
MS.gene037809.t1 MTR_5g091980 33.607 244 139 7 89 313 48 287 3.29e-30 119
MS.gene037809.t1 MTR_4g112670 33.906 233 131 6 87 300 37 265 3.79e-29 116
MS.gene037809.t1 MTR_4g112630 33.898 236 130 7 87 300 36 267 9.91e-27 109
MS.gene037809.t1 MTR_2g058450 32.328 232 135 6 89 301 40 268 2.36e-25 105
MS.gene037809.t1 MTR_4g112650 33.476 233 130 8 89 300 38 266 3.19e-25 105
MS.gene037809.t1 MTR_2g058410 36.364 176 89 7 136 300 1 164 1.60e-21 92.8
MS.gene037809.t1 MTR_0003s0530 35.833 120 75 2 182 300 2 120 3.00e-17 80.1
MS.gene037809.t1 MTR_8g075500 69.565 46 10 1 106 151 173 214 1.91e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037809.t1 AT3G51440 48.370 368 183 4 26 392 5 366 5.65e-121 355
MS.gene037809.t1 AT3G51450 46.196 368 191 4 26 392 5 366 1.25e-113 337
MS.gene037809.t1 AT3G51430 44.959 367 195 4 27 392 6 366 9.68e-112 332
MS.gene037809.t1 AT3G51430 45.232 367 192 5 27 392 6 364 4.43e-111 330
MS.gene037809.t1 AT3G51420 45.652 368 193 4 26 392 5 366 1.06e-110 329
MS.gene037809.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene037809.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene037809.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene037809.t1 AT1G08470 34.483 261 149 6 79 321 59 315 2.12e-38 142
MS.gene037809.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene037809.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene037809.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene037809.t1 AT3G57030 29.923 391 213 13 30 382 2 369 5.76e-36 135
MS.gene037809.t1 AT3G57020 29.538 325 201 9 87 388 51 370 1.26e-32 126
MS.gene037809.t1 AT3G57020 29.936 314 200 9 87 388 51 356 1.84e-30 120
MS.gene037809.t1 AT3G57010 28.107 338 199 12 87 393 52 376 1.81e-29 117
MS.gene037809.t1 AT1G74010 36.170 235 127 8 89 305 37 266 2.33e-29 116
MS.gene037809.t1 AT2G41290 30.091 329 185 11 89 381 51 370 5.84e-29 116
MS.gene037809.t1 AT1G74020 30.798 263 148 8 89 321 38 296 4.58e-27 110
MS.gene037809.t1 AT2G41300 28.824 340 214 11 64 386 64 392 4.66e-26 108
MS.gene037809.t1 AT1G74000 29.876 241 147 7 83 305 34 270 3.11e-24 102

Find 90 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACTCGATGGTTGAAAAT+TGG 0.257497 8.2:+30494868 MS.gene037809:CDS
CCAACATAATGAATATTATC+TGG 0.284932 8.2:-30496694 None:intergenic
AGACCAAAACTAGGGATTAA+TGG 0.305795 8.2:+30497374 MS.gene037809:CDS
GACCAAAACTAGGGATTAAT+GGG 0.325402 8.2:+30497375 MS.gene037809:CDS
GAAGAGGCGTCTTATATATA+CGG 0.329151 8.2:+30494797 MS.gene037809:CDS
TTATCATAAGCCAAGTCTTC+AGG 0.342505 8.2:-30494774 None:intergenic
GGGAGTTATAGTTGTGGATT+TGG 0.359842 8.2:+30497397 MS.gene037809:CDS
CGTAACCTCTACTTTGCTAA+TGG 0.369732 8.2:+30496131 MS.gene037809:CDS
AATATTCATTATGTTGGAAA+AGG 0.377022 8.2:+30496700 MS.gene037809:CDS
TGATTTCTACAACGATATCT+TGG 0.381372 8.2:+30496043 MS.gene037809:CDS
CTTATTAATCATAGCTTTCC+CGG 0.384597 8.2:+30494599 MS.gene037809:CDS
AAGACCACTTGGACTTGCTT+TGG 0.385209 8.2:+30494905 MS.gene037809:CDS
AGAAGAAACACTGCTTGATT+CGG 0.405140 8.2:-30494526 None:intergenic
CTGCTTGATTCGGACGTTGT+TGG 0.405730 8.2:-30494516 None:intergenic
GGACTTGCTTTGGAGAAAAC+TGG 0.410861 8.2:+30494915 MS.gene037809:CDS
GGGTTGACAGTTGGAGCCGT+GGG 0.426206 8.2:-30494702 None:intergenic
TGACTCGATGGTTGAAAATT+GGG 0.426472 8.2:+30494869 MS.gene037809:CDS
GTGGTGGAGGGTAGGGTAGA+TGG 0.431819 8.2:+30494750 MS.gene037809:CDS
TCTGGCATGCCGGGTAGGTC+AGG 0.444845 8.2:-30496676 None:intergenic
AACTGGTTCACTTTCCAGCC+AGG 0.445181 8.2:+30494661 MS.gene037809:CDS
CCAGATAATATTCATTATGT+TGG 0.449275 8.2:+30496694 MS.gene037809:CDS
GGCAGTCAATAACTTCTCAA+TGG 0.453895 8.2:+30497288 MS.gene037809:intron
TGGTTCCGAAGTCGTGGTGG+AGG 0.455201 8.2:+30494737 MS.gene037809:CDS
CACTTGAAATCAATGATAGT+TGG 0.463840 8.2:-30497451 None:intergenic
CATAGTTGCGGACGCTGACT+TGG 0.467767 8.2:+30494944 MS.gene037809:CDS
GTTATAGTTGTGGATTTGGC+AGG 0.469059 8.2:+30497401 MS.gene037809:CDS
ATGAATATTATCTGGCATGC+CGG 0.469077 8.2:-30496686 None:intergenic
GCAGTCAATAACTTCTCAAT+GGG 0.474333 8.2:+30497289 MS.gene037809:intron
ATTAGCAAAGTAGAGGTTAC+GGG 0.474734 8.2:-30496129 None:intergenic
CCGAAGTCGTGGTGGAGGGT+AGG 0.476263 8.2:+30494742 MS.gene037809:CDS
CACACTGGTGGAAGACCACT+TGG 0.484706 8.2:+30494894 MS.gene037809:CDS
ACGAATTACTGTGAATGAAT+CGG 0.488343 8.2:+30494842 MS.gene037809:CDS
CGGGTTGACAGTTGGAGCCG+TGG 0.489834 8.2:-30494703 None:intergenic
CATTAGCAAAGTAGAGGTTA+CGG 0.491944 8.2:-30496130 None:intergenic
TTAAAATTCAAGTTAACAGA+TGG 0.493578 8.2:+30495957 MS.gene037809:CDS
AGTTGTGGATTTGGCAGGAA+AGG 0.494082 8.2:+30497406 MS.gene037809:CDS
CGGAACCAACCCACATGTGC+GGG 0.494965 8.2:-30494722 None:intergenic
CGAAGTCGTGGTGGAGGGTA+GGG 0.495803 8.2:+30494743 MS.gene037809:CDS
TTGACTGTTGTTCATGCTGA+GGG 0.500774 8.2:-30497560 None:intergenic
CAAACTCGGACAGTTTGAAC+TGG 0.503297 8.2:+30494644 MS.gene037809:CDS
TGAATATTATCTGGCATGCC+GGG 0.508137 8.2:-30496685 None:intergenic
GGTTTGCGAGGGTAACTCCC+TGG 0.511440 8.2:-30494679 None:intergenic
GTTGATAATTATATATATTG+TGG 0.512752 8.2:+30497482 MS.gene037809:CDS
ATACGGGTTGTGAGGATGGA+TGG 0.521741 8.2:+30494814 MS.gene037809:CDS
TAAAATTCAAGTTAACAGAT+GGG 0.522474 8.2:+30495958 MS.gene037809:CDS
ATATTCATTATGTTGGAAAA+GGG 0.525563 8.2:+30496701 MS.gene037809:CDS
GGGGTTGATGTAGGTGAAGA+TGG 0.525866 8.2:+30495978 MS.gene037809:CDS
AGAATAGCAGCTAATGCTAC+CGG 0.526322 8.2:-30494618 None:intergenic
CAACTATCATTGATTTCAAG+TGG 0.527805 8.2:+30497452 MS.gene037809:CDS
CAACTGTCAACCCGCACATG+TGG 0.533793 8.2:+30494712 MS.gene037809:CDS
ATATATACGGGTTGTGAGGA+TGG 0.540191 8.2:+30494810 MS.gene037809:CDS
GTTGACTGTTGTTCATGCTG+AGG 0.542452 8.2:-30497561 None:intergenic
CACATGTGCGGGTTGACAGT+TGG 0.545258 8.2:-30494711 None:intergenic
GGTAGATGGACCTGAAGACT+TGG 0.547168 8.2:+30494764 MS.gene037809:CDS
TGCGAGGGTAACTCCCTGGC+TGG 0.549549 8.2:-30494675 None:intergenic
TTAACAGATGGGGTTGATGT+AGG 0.553836 8.2:+30495969 MS.gene037809:CDS
AAGAGGCGTCTTATATATAC+GGG 0.565621 8.2:+30494798 MS.gene037809:CDS
CCTACCCTCCACCACGACTT+CGG 0.566937 8.2:-30494742 None:intergenic
AAAATTCAAGTTAACAGATG+GGG 0.568583 8.2:+30495959 MS.gene037809:CDS
TATTATCTGGCATGCCGGGT+AGG 0.575920 8.2:-30496681 None:intergenic
TTCTACAACGATATCTTGGA+AGG 0.580448 8.2:+30496047 MS.gene037809:CDS
GGTTGACAGTTGGAGCCGTG+GGG 0.584683 8.2:-30494701 None:intergenic
AACTATCATTGATTTCAAGT+GGG 0.585821 8.2:+30497453 MS.gene037809:CDS
GTTGACAGTTGGAGCCGTGG+GGG 0.589619 8.2:-30494700 None:intergenic
GAAAATTGGGTTCACACTGG+TGG 0.592486 8.2:+30494882 MS.gene037809:CDS
GTTCATGCTGAGGGAAGTGC+AGG 0.600630 8.2:-30497551 None:intergenic
TGCAGAAAATATTACCTACA+AGG 0.602205 8.2:+30496622 MS.gene037809:CDS
ACTGGTTCACTTTCCAGCCA+GGG 0.604623 8.2:+30494662 MS.gene037809:CDS
AACTGTCAACCCGCACATGT+GGG 0.607719 8.2:+30494713 MS.gene037809:CDS
GTCAACCCGCACATGTGGGT+TGG 0.608093 8.2:+30494717 MS.gene037809:CDS
GAATAGCAGCTAATGCTACC+GGG 0.612763 8.2:-30494617 None:intergenic
TCGGAACCAACCCACATGTG+CGG 0.613661 8.2:-30494723 None:intergenic
TTCTCCAAAGCAAGTCCAAG+TGG 0.616513 8.2:-30494909 None:intergenic
TCTTATATATACGGGTTGTG+AGG 0.617398 8.2:+30494806 MS.gene037809:CDS
GGTTCCGAAGTCGTGGTGGA+GGG 0.619218 8.2:+30494738 MS.gene037809:CDS
TGAATCGGTGGCTGACTCGA+TGG 0.624849 8.2:+30494857 MS.gene037809:CDS
CAACTCCATTAGCAAAGTAG+AGG 0.625379 8.2:-30496136 None:intergenic
GTGGGTTGGTTCCGAAGTCG+TGG 0.630335 8.2:+30494731 MS.gene037809:CDS
ACTTGGCTTATGATAAGAAG+AGG 0.631927 8.2:+30494781 MS.gene037809:CDS
GGTTGGTTCCGAAGTCGTGG+TGG 0.639619 8.2:+30494734 MS.gene037809:CDS
GCTGCTATTCTCTACAAACT+CGG 0.641756 8.2:+30494630 MS.gene037809:CDS
GTTGAAAATTGGGTTCACAC+TGG 0.650996 8.2:+30494879 MS.gene037809:CDS
AACTGGTGAACTCATAGTTG+CGG 0.661307 8.2:+30494932 MS.gene037809:CDS
ATCTTGGAAGGTGAACCTCA+TGG 0.664644 8.2:+30496059 MS.gene037809:CDS
ATTCTAGCAGATGAACATGA+CGG 0.671427 8.2:+30495933 MS.gene037809:CDS
ACCAAAACTAGGGATTAATG+GGG 0.671442 8.2:+30497376 MS.gene037809:CDS
AAAAGAAGGGAAGAAAACGA+AGG 0.706726 8.2:+30495905 MS.gene037809:CDS
AATTACTGTGAATGAATCGG+TGG 0.717583 8.2:+30494845 MS.gene037809:CDS
TAGCTCATGAATCTACCATG+AGG 0.726341 8.2:-30496074 None:intergenic
CCAAAACTAGGGATTAATGG+GGG 0.727146 8.2:+30497377 MS.gene037809:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTAATTATTTAAACA+AGG - chr8.2:30496551-30496570 None:intergenic 10.0%
!! AAGTTTAATTATTTAAACAA+GGG - chr8.2:30496550-30496569 None:intergenic 10.0%
!! AATAATTGTAATAATGATAT+AGG + chr8.2:30495863-30495882 MS.gene037809:intron 10.0%
!! AATCTCATAAATTATTTAAT+TGG + chr8.2:30495811-30495830 MS.gene037809:intron 10.0%
!! ATAATTGTAATAATGATATA+GGG + chr8.2:30495864-30495883 MS.gene037809:intron 10.0%
!! TTAATATAAAATATGATAGA+GGG + chr8.2:30495274-30495293 MS.gene037809:intron 10.0%
!! TTTAATATAAAATATGATAG+AGG + chr8.2:30495273-30495292 MS.gene037809:intron 10.0%
!!! AGATTATTTTTACAAAAAAA+TGG + chr8.2:30495003-30495022 MS.gene037809:intron 10.0%
!!! ATAATTTATGAGATTTATTT+TGG - chr8.2:30495806-30495825 None:intergenic 10.0%
!!! TAAAAAATTTGAACTTTTTA+AGG + chr8.2:30496879-30496898 MS.gene037809:intron 10.0%
!!! TTATCAAATTTTAAAATAAG+AGG - chr8.2:30495106-30495125 None:intergenic 10.0%
!! AATACTAACAAGTATTATAA+TGG - chr8.2:30496400-30496419 None:intergenic 15.0%
!! CGTAAAATAATAAAAATAGA+GGG - chr8.2:30495075-30495094 None:intergenic 15.0%
!! TATTCATTTGAAAAATTCTT+TGG + chr8.2:30495557-30495576 MS.gene037809:intron 15.0%
!! TCGTAAAATAATAAAAATAG+AGG - chr8.2:30495076-30495095 None:intergenic 15.0%
!! TTCTTTAACTAATATCTTAA+GGG - chr8.2:30496271-30496290 None:intergenic 15.0%
!! TTTCTTTAACTAATATCTTA+AGG - chr8.2:30496272-30496291 None:intergenic 15.0%
!!! AGGATTTTGTATAATTTATA+AGG - chr8.2:30496447-30496466 None:intergenic 15.0%
!!! ATTTTAAAATCTAACTGTTT+TGG - chr8.2:30495301-30495320 None:intergenic 15.0%
!!! ATTTTAGATCAAATATTTGA+TGG - chr8.2:30495138-30495157 None:intergenic 15.0%
!!! GTTGATAATTATATATATTG+TGG + chr8.2:30497482-30497501 MS.gene037809:CDS 15.0%
!!! TTGTTTTAACTCTAAAATAT+AGG - chr8.2:30495370-30495389 None:intergenic 15.0%
!!! TTTGAATAATTTTCAACTAT+TGG + chr8.2:30496505-30496524 MS.gene037809:intron 15.0%
!! AATATTCATTATGTTGGAAA+AGG + chr8.2:30496700-30496719 MS.gene037809:CDS 20.0%
!! ATATTCATTATGTTGGAAAA+GGG + chr8.2:30496701-30496720 MS.gene037809:CDS 20.0%
!! TATTTACATAGATCCATTAT+GGG - chr8.2:30494975-30494994 None:intergenic 20.0%
!!! TAAAATTCAAGTTAACAGAT+GGG + chr8.2:30495958-30495977 MS.gene037809:CDS 20.0%
!!! TTAAAATTCAAGTTAACAGA+TGG + chr8.2:30495957-30495976 MS.gene037809:CDS 20.0%
!!! TTATTATTACGAAGTTTTCA+CGG + chr8.2:30497136-30497155 MS.gene037809:intron 20.0%
!!! TTTAAGTTTAATAACGGTTT+TGG + chr8.2:30495048-30495067 MS.gene037809:intron 20.0%
! AATAAATCCCTTATATACTC+TGG + chr8.2:30497213-30497232 MS.gene037809:intron 25.0%
! AATTAAGAATCATCTTACCA+AGG - chr8.2:30496746-30496765 None:intergenic 25.0%
! ACTATAAACCAGAGTATATA+AGG - chr8.2:30497224-30497243 None:intergenic 25.0%
! ATGGAAAAATTTGATTGGAA+AGG + chr8.2:30496935-30496954 MS.gene037809:intron 25.0%
! CAATAACTGATTAATCAAAG+TGG + chr8.2:30496856-30496875 MS.gene037809:intron 25.0%
! CACTTTGATTAATCAGTTAT+TGG - chr8.2:30496858-30496877 None:intergenic 25.0%
! CCAACATAATGAATATTATC+TGG - chr8.2:30496697-30496716 None:intergenic 25.0%
! CCAGATAATATTCATTATGT+TGG + chr8.2:30496694-30496713 MS.gene037809:CDS 25.0%
! CTATAAACCAGAGTATATAA+GGG - chr8.2:30497223-30497242 None:intergenic 25.0%
! CTATTTACATAGATCCATTA+TGG - chr8.2:30494976-30494995 None:intergenic 25.0%
! CTTTGACCAAAATTATTAAG+GGG - chr8.2:30497092-30497111 None:intergenic 25.0%
! GCTTTGACCAAAATTATTAA+GGG - chr8.2:30497093-30497112 None:intergenic 25.0%
! TAGTAAAAACGGATAATAAG+AGG - chr8.2:30497510-30497529 None:intergenic 25.0%
! TGCTTTGACCAAAATTATTA+AGG - chr8.2:30497094-30497113 None:intergenic 25.0%
!! AAAATTCAAGTTAACAGATG+GGG + chr8.2:30495959-30495978 MS.gene037809:CDS 25.0%
!! AAGAGTTCAATTGTAGTTTT+TGG + chr8.2:30496910-30496929 MS.gene037809:intron 25.0%
!! TAGACAACAAATTTTTGATC+AGG - chr8.2:30496170-30496189 None:intergenic 25.0%
!! TATAATTTTTGTGCTACACT+TGG + chr8.2:30496975-30496994 MS.gene037809:intron 25.0%
!! TTTTAGCCCCTTAATAATTT+TGG + chr8.2:30497083-30497102 MS.gene037809:intron 25.0%
!!! AACTATCATTGATTTCAAGT+GGG + chr8.2:30497453-30497472 MS.gene037809:CDS 25.0%
!!! ATGCATGTTTTGTGTTTTAA+TGG + chr8.2:30497267-30497286 MS.gene037809:intron 25.0%
!!! ATTTTAGAAGACCAAAACTA+GGG + chr8.2:30497366-30497385 MS.gene037809:CDS 25.0%
!!! CTTATTATCCGTTTTTACTA+CGG + chr8.2:30497510-30497529 MS.gene037809:CDS 25.0%
!!! GTCAAAGCAAGATTATTTTT+GGG + chr8.2:30497105-30497124 MS.gene037809:intron 25.0%
!!! TTATGAAAGACTGATTTTAC+AGG + chr8.2:30496593-30496612 MS.gene037809:intron 25.0%
ACACTAACAATGACAATTGA+TGG - chr8.2:30496485-30496504 None:intergenic 30.0%
ACGAATTACTGTGAATGAAT+CGG + chr8.2:30494842-30494861 MS.gene037809:CDS 30.0%
CACTTGAAATCAATGATAGT+TGG - chr8.2:30497454-30497473 None:intergenic 30.0%
CTATAATCCAGCAACAAAAA+AGG + chr8.2:30496094-30496113 MS.gene037809:CDS 30.0%
CTTATTAATCATAGCTTTCC+CGG + chr8.2:30494599-30494618 MS.gene037809:CDS 30.0%
GGAGTTAACTTATTTGATCA+TGG + chr8.2:30495832-30495851 MS.gene037809:intron 30.0%
TATAGGCTGAATTGCAATAT+TGG - chr8.2:30495353-30495372 None:intergenic 30.0%
TGATTTCTACAACGATATCT+TGG + chr8.2:30496043-30496062 MS.gene037809:CDS 30.0%
TGCAGAAAATATTACCTACA+AGG + chr8.2:30496622-30496641 MS.gene037809:CDS 30.0%
TGGCTATGGAAAAATTTGAT+TGG + chr8.2:30496930-30496949 MS.gene037809:intron 30.0%
TGTCACATTGCATTTATGTT+CGG + chr8.2:30497060-30497079 MS.gene037809:intron 30.0%
TTAAACAAGGGCAAATTCTA+TGG - chr8.2:30496538-30496557 None:intergenic 30.0%
! GGTCAAAGCAAGATTATTTT+TGG + chr8.2:30497104-30497123 MS.gene037809:intron 30.0%
! TAATTTTCAACTATTGGTCG+CGG + chr8.2:30496511-30496530 MS.gene037809:intron 30.0%
! TTCTTTGGTACAAGTACTTT+TGG + chr8.2:30495572-30495591 MS.gene037809:intron 30.0%
!! CAACTATCATTGATTTCAAG+TGG + chr8.2:30497452-30497471 MS.gene037809:CDS 30.0%
!! CATTTTAGAAGACCAAAACT+AGG + chr8.2:30497365-30497384 MS.gene037809:CDS 30.0%
!!! AATGTAACCTTTTTTGTTGC+TGG - chr8.2:30496104-30496123 None:intergenic 30.0%
!!! CTTGTTTGTTTTGTTTGAAG+TGG - chr8.2:30494555-30494574 None:intergenic 30.0%
!!! TCAATTGTAGTTTTTGGCTA+TGG + chr8.2:30496916-30496935 MS.gene037809:intron 30.0%
AAAAGAAGGGAAGAAAACGA+AGG + chr8.2:30495905-30495924 MS.gene037809:CDS 35.0%
AATTACTGTGAATGAATCGG+TGG + chr8.2:30494845-30494864 MS.gene037809:CDS 35.0%
ACATCTAGCCGTAGTAAAAA+CGG - chr8.2:30497521-30497540 None:intergenic 35.0%
ACCAAAACTAGGGATTAATG+GGG + chr8.2:30497376-30497395 MS.gene037809:CDS 35.0%
ACTTGGCTTATGATAAGAAG+AGG + chr8.2:30494781-30494800 MS.gene037809:CDS 35.0%
AGAAGAAACACTGCTTGATT+CGG - chr8.2:30494529-30494548 None:intergenic 35.0%
AGACCAAAACTAGGGATTAA+TGG + chr8.2:30497374-30497393 MS.gene037809:CDS 35.0%
AGCATGTACTAGAGTAATGT+TGG + chr8.2:30495481-30495500 MS.gene037809:intron 35.0%
ATGAATATTATCTGGCATGC+CGG - chr8.2:30496689-30496708 None:intergenic 35.0%
ATTAGCAAAGTAGAGGTTAC+GGG - chr8.2:30496132-30496151 None:intergenic 35.0%
ATTCTAGCAGATGAACATGA+CGG + chr8.2:30495933-30495952 MS.gene037809:CDS 35.0%
CATTAGCAAAGTAGAGGTTA+CGG - chr8.2:30496133-30496152 None:intergenic 35.0%
GACCAAAACTAGGGATTAAT+GGG + chr8.2:30497375-30497394 MS.gene037809:CDS 35.0%
GATGGTTGAGACAAAATTCA+AGG - chr8.2:30496467-30496486 None:intergenic 35.0%
GCAGTCAATAACTTCTCAAT+GGG + chr8.2:30497289-30497308 MS.gene037809:intron 35.0%
TGACTCGATGGTTGAAAATT+GGG + chr8.2:30494869-30494888 MS.gene037809:CDS 35.0%
TGAGAGTGACACAAAAAGAA+GGG + chr8.2:30495892-30495911 MS.gene037809:CDS 35.0%
TTATCATAAGCCAAGTCTTC+AGG - chr8.2:30494777-30494796 None:intergenic 35.0%
TTCTACAACGATATCTTGGA+AGG + chr8.2:30496047-30496066 MS.gene037809:CDS 35.0%
TTGAGAGTGACACAAAAAGA+AGG + chr8.2:30495891-30495910 MS.gene037809:CDS 35.0%
! AGGGCAGTATTTTATTGGAA+CGG + chr8.2:30496720-30496739 MS.gene037809:CDS 35.0%
! GGAAAAGGGCAGTATTTTAT+TGG + chr8.2:30496715-30496734 MS.gene037809:CDS 35.0%
! TCTTATATATACGGGTTGTG+AGG + chr8.2:30494806-30494825 MS.gene037809:CDS 35.0%
!! AAGACTGATTTTACAGGAGT+AGG + chr8.2:30496599-30496618 MS.gene037809:intron 35.0%
!! AAGAGGCGTCTTATATATAC+GGG + chr8.2:30494798-30494817 MS.gene037809:CDS 35.0%
!! GAAGAGGCGTCTTATATATA+CGG + chr8.2:30494797-30494816 MS.gene037809:CDS 35.0%
!!! GTTTGTTTTGTTTGAAGTGG+CGG - chr8.2:30494552-30494571 None:intergenic 35.0%
!!! TCGCCTATTCTTCCTTTTTT+GGG - chr8.2:30496649-30496668 None:intergenic 35.0%
!!! TTCGCCTATTCTTCCTTTTT+TGG - chr8.2:30496650-30496669 None:intergenic 35.0%
AACTGGTGAACTCATAGTTG+CGG + chr8.2:30494932-30494951 MS.gene037809:CDS 40.0%
AGAATAGCAGCTAATGCTAC+CGG - chr8.2:30494621-30494640 None:intergenic 40.0%
CAACTCCATTAGCAAAGTAG+AGG - chr8.2:30496139-30496158 None:intergenic 40.0%
CCAAAACTAGGGATTAATGG+GGG + chr8.2:30497377-30497396 MS.gene037809:CDS 40.0%
CGTAACCTCTACTTTGCTAA+TGG + chr8.2:30496131-30496150 MS.gene037809:CDS 40.0%
CTTGGAATACTAGTGAACAG+TGG + chr8.2:30496993-30497012 MS.gene037809:intron 40.0%
GCATGTACACGTTGTATAGA+AGG + chr8.2:30495447-30495466 MS.gene037809:intron 40.0%
GCTGCTATTCTCTACAAACT+CGG + chr8.2:30494630-30494649 MS.gene037809:CDS 40.0%
GGCAGTCAATAACTTCTCAA+TGG + chr8.2:30497288-30497307 MS.gene037809:intron 40.0%
GGGAGTTATAGTTGTGGATT+TGG + chr8.2:30497397-30497416 MS.gene037809:CDS 40.0%
GGTCCCAAAAAAGGAAGAAT+AGG + chr8.2:30496643-30496662 MS.gene037809:CDS 40.0%
GTTATAGTTGTGGATTTGGC+AGG + chr8.2:30497401-30497420 MS.gene037809:CDS 40.0%
GTTGAAAATTGGGTTCACAC+TGG + chr8.2:30494879-30494898 MS.gene037809:CDS 40.0%
TAATGGGGGAGTTATAGTTG+TGG + chr8.2:30497391-30497410 MS.gene037809:CDS 40.0%
TACCTACAAGGTCCCAAAAA+AGG + chr8.2:30496634-30496653 MS.gene037809:CDS 40.0%
TAGCTCATGAATCTACCATG+AGG - chr8.2:30496077-30496096 None:intergenic 40.0%
TGAATATTATCTGGCATGCC+GGG - chr8.2:30496688-30496707 None:intergenic 40.0%
! ATATATACGGGTTGTGAGGA+TGG + chr8.2:30494810-30494829 MS.gene037809:CDS 40.0%
! CTGACTCGATGGTTGAAAAT+TGG + chr8.2:30494868-30494887 MS.gene037809:CDS 40.0%
! GTATTTTATTGGAACGGCCT+TGG + chr8.2:30496726-30496745 MS.gene037809:CDS 40.0%
! TGTCGACTGAATTGAAGAGT+GGG - chr8.2:30496232-30496251 None:intergenic 40.0%
! TTGTCGACTGAATTGAAGAG+TGG - chr8.2:30496233-30496252 None:intergenic 40.0%
!! TGACTTGGTATGTCCCATAA+TGG + chr8.2:30494959-30494978 MS.gene037809:intron 40.0%
!! TTAACAGATGGGGTTGATGT+AGG + chr8.2:30495969-30495988 MS.gene037809:CDS 40.0%
!!! TTCCTTTTTTGGGACCTTGT+AGG - chr8.2:30496639-30496658 None:intergenic 40.0%
AGTTGTGGATTTGGCAGGAA+AGG + chr8.2:30497406-30497425 MS.gene037809:CDS 45.0%
ATCTTGGAAGGTGAACCTCA+TGG + chr8.2:30496059-30496078 MS.gene037809:CDS 45.0%
CAAACTCGGACAGTTTGAAC+TGG + chr8.2:30494644-30494663 MS.gene037809:CDS 45.0%
CCTTCGAAAAACTGCAGCAA+TGG + chr8.2:30497334-30497353 MS.gene037809:CDS 45.0%
GAAAATTGGGTTCACACTGG+TGG + chr8.2:30494882-30494901 MS.gene037809:CDS 45.0%
GAATAGCAGCTAATGCTACC+GGG - chr8.2:30494620-30494639 None:intergenic 45.0%
TTCTCCAAAGCAAGTCCAAG+TGG - chr8.2:30494912-30494931 None:intergenic 45.0%
! AAGACCACTTGGACTTGCTT+TGG + chr8.2:30494905-30494924 MS.gene037809:CDS 45.0%
! CCCCCATTAATCCCTAGTTT+TGG - chr8.2:30497380-30497399 None:intergenic 45.0%
! GAATTTTCTCCTGACCTACC+CGG + chr8.2:30496667-30496686 MS.gene037809:CDS 45.0%
!! CCATTGCTGCAGTTTTTCGA+AGG - chr8.2:30497337-30497356 None:intergenic 45.0%
!! GCTGCAGTTTTTCGAAGGAA+AGG - chr8.2:30497332-30497351 None:intergenic 45.0%
!! GGACTTGCTTTGGAGAAAAC+TGG + chr8.2:30494915-30494934 MS.gene037809:CDS 45.0%
!! TAAAAAAAAAAAAAAACTAT+AGG + chr8.2:30497023-30497042 MS.gene037809:intron 5.0%
!!! AATAATTAAACTTTTTTTTA+TGG + chr8.2:30496557-30496576 MS.gene037809:intron 5.0%
!!! ATAATTAAACTTTTTTTTAT+GGG + chr8.2:30496558-30496577 MS.gene037809:intron 5.0%
!!! TTTTATTTTAAGTTTAATAA+CGG + chr8.2:30495042-30495061 MS.gene037809:intron 5.0%
AACTGTCAACCCGCACATGT+GGG + chr8.2:30494713-30494732 MS.gene037809:CDS 50.0%
GGTAGATGGACCTGAAGACT+TGG + chr8.2:30494764-30494783 MS.gene037809:CDS 50.0%
TATTATCTGGCATGCCGGGT+AGG - chr8.2:30496684-30496703 None:intergenic 50.0%
! AACTGGTTCACTTTCCAGCC+AGG + chr8.2:30494661-30494680 MS.gene037809:CDS 50.0%
! ACTGGTTCACTTTCCAGCCA+GGG + chr8.2:30494662-30494681 MS.gene037809:CDS 50.0%
! ATACGGGTTGTGAGGATGGA+TGG + chr8.2:30494814-30494833 MS.gene037809:CDS 50.0%
!! CTGCTTGATTCGGACGTTGT+TGG - chr8.2:30494519-30494538 None:intergenic 50.0%
!! GGGGTTGATGTAGGTGAAGA+TGG + chr8.2:30495978-30495997 MS.gene037809:CDS 50.0%
CAACTGTCAACCCGCACATG+TGG + chr8.2:30494712-30494731 MS.gene037809:CDS 55.0%
CACACTGGTGGAAGACCACT+TGG + chr8.2:30494894-30494913 MS.gene037809:CDS 55.0%
TCGGAACCAACCCACATGTG+CGG - chr8.2:30494726-30494745 None:intergenic 55.0%
! CACATGTGCGGGTTGACAGT+TGG - chr8.2:30494714-30494733 None:intergenic 55.0%
! CATAGTTGCGGACGCTGACT+TGG + chr8.2:30494944-30494963 MS.gene037809:CDS 55.0%
!! TGAATCGGTGGCTGACTCGA+TGG + chr8.2:30494857-30494876 MS.gene037809:CDS 55.0%
CCTACCCTCCACCACGACTT+CGG - chr8.2:30494745-30494764 None:intergenic 60.0%
CGGAACCAACCCACATGTGC+GGG - chr8.2:30494725-30494744 None:intergenic 60.0%
GGGTTGACAGTTGGAGCCGT+GGG - chr8.2:30494705-30494724 None:intergenic 60.0%
GGTTGACAGTTGGAGCCGTG+GGG - chr8.2:30494704-30494723 None:intergenic 60.0%
GGTTTGCGAGGGTAACTCCC+TGG - chr8.2:30494682-30494701 None:intergenic 60.0%
GTCAACCCGCACATGTGGGT+TGG + chr8.2:30494717-30494736 MS.gene037809:CDS 60.0%
GTTACCCTCGCAAACCCCCA+CGG + chr8.2:30494686-30494705 MS.gene037809:CDS 60.0%
GTTGACAGTTGGAGCCGTGG+GGG - chr8.2:30494703-30494722 None:intergenic 60.0%
TGGTTCCGAAGTCGTGGTGG+AGG + chr8.2:30494737-30494756 MS.gene037809:CDS 60.0%
! CGAAGTCGTGGTGGAGGGTA+GGG + chr8.2:30494743-30494762 MS.gene037809:CDS 60.0%
! GGTTCCGAAGTCGTGGTGGA+GGG + chr8.2:30494738-30494757 MS.gene037809:CDS 60.0%
! GGTTGGTTCCGAAGTCGTGG+TGG + chr8.2:30494734-30494753 MS.gene037809:CDS 60.0%
! GTGGTGGAGGGTAGGGTAGA+TGG + chr8.2:30494750-30494769 MS.gene037809:CDS 60.0%
!! GTGGGTTGGTTCCGAAGTCG+TGG + chr8.2:30494731-30494750 MS.gene037809:CDS 60.0%
TCTGGCATGCCGGGTAGGTC+AGG - chr8.2:30496679-30496698 None:intergenic 65.0%
TGCGAGGGTAACTCCCTGGC+TGG - chr8.2:30494678-30494697 None:intergenic 65.0%
! CCGAAGTCGTGGTGGAGGGT+AGG + chr8.2:30494742-30494761 MS.gene037809:CDS 65.0%
! CGGGTTGACAGTTGGAGCCG+TGG - chr8.2:30494706-30494725 None:intergenic 65.0%
GGAGCCGTGGGGGTTTGCGA+GGG - chr8.2:30494693-30494712 None:intergenic 70.0%
TGGAGCCGTGGGGGTTTGCG+AGG - chr8.2:30494694-30494713 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 30494507 30497571 30494507 ID=MS.gene037809
chr8.2 mRNA 30494507 30497571 30494507 ID=MS.gene037809.t1;Parent=MS.gene037809
chr8.2 exon 30494507 30494965 30494507 ID=MS.gene037809.t1.exon1;Parent=MS.gene037809.t1
chr8.2 CDS 30494507 30494965 30494507 ID=cds.MS.gene037809.t1;Parent=MS.gene037809.t1
chr8.2 exon 30495885 30496204 30495885 ID=MS.gene037809.t1.exon2;Parent=MS.gene037809.t1
chr8.2 CDS 30495885 30496204 30495885 ID=cds.MS.gene037809.t1;Parent=MS.gene037809.t1
chr8.2 exon 30496615 30496747 30496615 ID=MS.gene037809.t1.exon3;Parent=MS.gene037809.t1
chr8.2 CDS 30496615 30496747 30496615 ID=cds.MS.gene037809.t1;Parent=MS.gene037809.t1
chr8.2 exon 30497293 30497571 30497293 ID=MS.gene037809.t1.exon4;Parent=MS.gene037809.t1
chr8.2 CDS 30497293 30497571 30497293 ID=cds.MS.gene037809.t1;Parent=MS.gene037809.t1
Gene Sequence

>MS.gene037809

ATGGCAAAACCAACAACGTCCGAATCAAGCAGTGTTTCTTCTCCGCCACTTCAAACAAAACAAACAAGATCATGTCTTTCAACAACAACAATCTTATTAATCATAGCTTTCCCGGTAGCATTAGCTGCTATTCTCTACAAACTCGGACAGTTTGAACTGGTTCACTTTCCAGCCAGGGAGTTACCCTCGCAAACCCCCACGGCTCCAACTGTCAACCCGCACATGTGGGTTGGTTCCGAAGTCGTGGTGGAGGGTAGGGTAGATGGACCTGAAGACTTGGCTTATGATAAGAAGAGGCGTCTTATATATACGGGTTGTGAGGATGGATGGATCAAACGAATTACTGTGAATGAATCGGTGGCTGACTCGATGGTTGAAAATTGGGTTCACACTGGTGGAAGACCACTTGGACTTGCTTTGGAGAAAACTGGTGAACTCATAGTTGCGGACGCTGACTTGGTATGTCCCATAATGGATCTATGTAAATAGAGTCTTTAGATTATTTTTACAAAAAAATGGATTGAAAGAGAAAATGTTTTATTTTAAGTTTAATAACGGTTTTGGTCCCTCTATTTTTATTATTTTACGAAATTGATCCTCTTATTTTAAAATTTGATAATTTTAATCTCCATCAAATATTTGATCTAAAATACAATAATATGACATGTTTTAAATTATTTTTCTTACAATTTCATCGATATTAATCTTTTCTCATCATCAAATCGATCATATATCACGTCATATAAAATATATTACATCATTAATTTTTAATATAAAATATGATAGAGGGACCAAAACAGTTAGATTTTAAAATAGATGAATCAATTCTGTCAAATAGTGTGACCAATATTGCAATTCAGCCTATATTTTAGAGTTAAAACAAGTTTAAATTTTTTATAGAATTTCTATTTTTTATCTTAGTTATTGTACGCACTTTTTAGCATGTACACGTTGTATAGAAGGTGAATATGCATAGCATGTACTAGAGTAATGTTGGTATGTACTGTACATGTCATTTAATCATTGAATGTCTTGTAAAATTTTTATATCTATTCATTTGAAAAATTCTTTGGTACAAGTACTTTTGGTACAACTAAAAATCTTTTACACTATCTCAAAATCGCAATGAAAATTTTAATCATTATAATTTTACATTGTCAATAAATTTTAATCATTAGATTATTAAAAATGTTAGATTATATGTTTCAAAAAAAATGTTAGATTATATTGAAAATACGTTTGAGTTACGTCTATGATTGATTGTGATTTTGAGATAGTAAAAGAACTTTAGTTGTACCAAAATAAATCTCATAAATTATTTAATTGGAGTTAACTTATTTGATCATGGTGCACAATAATAATTGTAATAATGATATAGGGACTATTGAGAGTGACACAAAAAGAAGGGAAGAAAACGAAGGTTGAAATTCTAGCAGATGAACATGACGGATTAAAATTCAAGTTAACAGATGGGGTTGATGTAGGTGAAGATGGTACAATTTATTTCACAGACGCTACATACAAATACAATTTGAATGATTTCTACAACGATATCTTGGAAGGTGAACCTCATGGTAGATTCATGAGCTATAATCCAGCAACAAAAAAGGTTACATTGCTTGCCCGTAACCTCTACTTTGCTAATGGAGTTGCAGTTGCACCTGATCAAAAATTTGTTGTCTACTGTGAAACTGCTATGTAAGTAATAACAATTTAGTTGCACCCACTCTTCAATTCAGTCGACAATCATGCTATCGAGCACCCTTAAGATATTAGTTAAAGAAAATTCTAAAAAAAAAAAAAAACTTTTTTTTAAAAATAACATTTTAAATTTAAAGAAAAAAGAGTTGAATACACACTTTTTAATTATATTAGTTGTCTTAAATTGTGCCATTATAATACTTGTTAGTATTTTTTAATTATATATAATAAGTAATCCTTATAAATTATACAAAATCCTTGAATTTTGTCTCAACCATCAATTGTCATTGTTAGTGTTTTGAATAATTTTCAACTATTGGTCGCGGACCATAGAATTTGCCCTTGTTTAAATAATTAAACTTTTTTTTATGGGAATTAAACTTATTTATGAAAGACTGATTTTACAGGAGTAGGTGCAGAAAATATTACCTACAAGGTCCCAAAAAAGGAAGAATAGGCGAATTTTCTCCTGACCTACCCGGCATGCCAGATAATATTCATTATGTTGGAAAAGGGCAGTATTTTATTGGAACGGCCTTGGTAAGATGATTCTTAATTAACTTTAAATTTTCACTTAGTATTATCGACTAGTCTAAATTATTTATTTTGCATAGAGTTAAATGAGTTAAATATGTTTTTAAAGTTCACCAATAACTGATTAATCAAAGTGGTAAAAAATTTGAACTTTTTAAGGAAATGATCAAGAGTTCAATTGTAGTTTTTGGCTATGGAAAAATTTGATTGGAAAGGAAGAACTAACAAAATATTATAATTTTTGTGCTACACTTGGAATACTAGTGAACAGTGGTAATTATTAAAAAAAAAAAAAAACTATAGGTTAATTACAAATTTTGTCACATTGCATTTATGTTCGGTTTTAGCCCCTTAATAATTTTGGTCAAAGCAAGATTATTTTTGGGTTAAAGTATTATTATTACGAAGTTTTCACGGTCGATTTGTAAAATTGCAAGATTTTTATAATGAAACAGTCATAACTAAAATCAAAATAAATCCCTTATATACTCTGGTTTATAGTATACAAAATGAAGCTGATTTCTAATGCATGTTTTGTGTTTTAATGGCAGTCAATAACTTCTCAATGGGAATTATTACTTAGATATCCTTTCCTTCGAAAAACTGCAGCAATGGTTACAAAGCATTTTAGAAGACCAAAACTAGGGATTAATGGGGGAGTTATAGTTGTGGATTTGGCAGGAAAGGTTACAGATCACTATTATGATCTCCAACTATCATTGATTTCAAGTGGGATCAAAGTTGATAATTATATATATTGTGGTTCCTCTTATTATCCGTTTTTACTACGGCTAGATGTGAAGCAATATCCTGCACTTCCCTCAGCATGA

Protein sequence

>MS.gene037809.t1

MAKPTTSESSSVSSPPLQTKQTRSCLSTTTILLIIAFPVALAAILYKLGQFELVHFPARELPSQTPTAPTVNPHMWVGSEVVVEGRVDGPEDLAYDKKRRLIYTGCEDGWIKRITVNESVADSMVENWVHTGGRPLGLALEKTGELIVADADLGLLRVTQKEGKKTKVEILADEHDGLKFKLTDGVDVGEDGTIYFTDATYKYNLNDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANGVAVAPDQKFVVYCETAMSRCRKYYLQGPKKGRIGEFSPDLPGMPDNIHYVGKGQYFIGTALSITSQWELLLRYPFLRKTAAMVTKHFRRPKLGINGGVIVVDLAGKVTDHYYDLQLSLISSGIKVDNYIYCGSSYYPFLLRLDVKQYPALPSA