Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27211.t1 | XP_003629179.1 | 91.7 | 312 | 26 | 0 | 1 | 312 | 64 | 375 | 5.20E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27211.t1 | Q9CAZ7 | 51.3 | 312 | 142 | 5 | 4 | 308 | 58 | 366 | 5.1e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27211.t1 | G7LA64 | 91.7 | 312 | 26 | 0 | 1 | 312 | 64 | 375 | 3.8e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27211 | MS.gene61630 | PPI |
| MS.gene27211 | MS.gene037812 | PPI |
| MS.gene23780 | MS.gene27211 | PPI |
| MS.gene27212 | MS.gene27211 | PPI |
| MS.gene23775 | MS.gene27211 | PPI |
| MS.gene061292 | MS.gene27211 | PPI |
| MS.gene27211 | MS.gene017554 | PPI |
| MS.gene032181 | MS.gene27211 | PPI |
| MS.gene017558 | MS.gene27211 | PPI |
| MS.gene98728 | MS.gene27211 | PPI |
| MS.gene037809 | MS.gene27211 | PPI |
| MS.gene27211 | MS.gene034366 | PPI |
| MS.gene052008 | MS.gene27211 | PPI |
| MS.gene017556 | MS.gene27211 | PPI |
| MS.gene23776 | MS.gene27211 | PPI |
| MS.gene27211 | MS.gene35719 | PPI |
| MS.gene037810 | MS.gene27211 | PPI |
| MS.gene27211 | MS.gene017555 | PPI |
| MS.gene059296 | MS.gene27211 | PPI |
| MS.gene27211 | MS.gene27210 | PPI |
| MS.gene27211 | MS.gene23779 | PPI |
| MS.gene27211 | MS.gene85273 | PPI |
| MS.gene66625 | MS.gene27211 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27211.t1 | MTR_8g074170 | 91.667 | 312 | 26 | 0 | 1 | 312 | 64 | 375 | 0.0 | 591 |
| MS.gene27211.t1 | MTR_8g074270 | 88.141 | 312 | 37 | 0 | 1 | 312 | 64 | 375 | 0.0 | 566 |
| MS.gene27211.t1 | MTR_8g074210 | 84.936 | 312 | 47 | 0 | 1 | 312 | 64 | 375 | 0.0 | 547 |
| MS.gene27211.t1 | MTR_8g074320 | 65.132 | 152 | 49 | 1 | 31 | 178 | 71 | 222 | 9.46e-68 | 211 |
| MS.gene27211.t1 | MTR_1g075865 | 86.916 | 107 | 14 | 0 | 104 | 210 | 7 | 113 | 1.15e-63 | 197 |
| MS.gene27211.t1 | MTR_2g042370 | 35.452 | 299 | 182 | 7 | 8 | 298 | 57 | 352 | 3.04e-49 | 168 |
| MS.gene27211.t1 | MTR_2g042430 | 34.091 | 308 | 179 | 8 | 8 | 301 | 69 | 366 | 1.29e-48 | 166 |
| MS.gene27211.t1 | MTR_2g042420 | 33.224 | 304 | 193 | 8 | 8 | 304 | 50 | 350 | 9.76e-47 | 161 |
| MS.gene27211.t1 | MTR_4g050190 | 32.808 | 317 | 180 | 7 | 15 | 298 | 70 | 386 | 1.12e-45 | 159 |
| MS.gene27211.t1 | MTR_2g087780 | 31.138 | 334 | 192 | 8 | 1 | 298 | 59 | 390 | 2.73e-39 | 142 |
| MS.gene27211.t1 | MTR_7g090320 | 30.211 | 331 | 190 | 7 | 13 | 302 | 56 | 386 | 3.00e-38 | 139 |
| MS.gene27211.t1 | MTR_7g090310 | 30.303 | 330 | 190 | 7 | 13 | 302 | 56 | 385 | 1.06e-37 | 138 |
| MS.gene27211.t1 | MTR_2g099030 | 32.812 | 256 | 144 | 4 | 10 | 237 | 77 | 332 | 7.16e-36 | 134 |
| MS.gene27211.t1 | MTR_4g112670 | 33.074 | 257 | 148 | 5 | 15 | 247 | 39 | 295 | 4.37e-33 | 124 |
| MS.gene27211.t1 | MTR_7g490330 | 34.100 | 261 | 143 | 8 | 12 | 245 | 44 | 302 | 5.34e-33 | 124 |
| MS.gene27211.t1 | MTR_7g090300 | 33.333 | 249 | 145 | 5 | 13 | 240 | 51 | 299 | 3.00e-32 | 123 |
| MS.gene27211.t1 | MTR_8g074290 | 53.211 | 109 | 47 | 3 | 180 | 286 | 46 | 152 | 4.84e-31 | 114 |
| MS.gene27211.t1 | MTR_7g490350 | 33.188 | 229 | 126 | 5 | 15 | 219 | 53 | 278 | 2.16e-30 | 118 |
| MS.gene27211.t1 | MTR_2g058450 | 31.915 | 235 | 135 | 4 | 15 | 224 | 40 | 274 | 9.15e-29 | 113 |
| MS.gene27211.t1 | MTR_4g112650 | 32.906 | 234 | 129 | 6 | 15 | 221 | 38 | 270 | 4.27e-27 | 108 |
| MS.gene27211.t1 | MTR_5g091980 | 33.913 | 230 | 129 | 7 | 15 | 222 | 48 | 276 | 1.31e-26 | 107 |
| MS.gene27211.t1 | MTR_4g112630 | 33.333 | 234 | 129 | 7 | 15 | 221 | 38 | 271 | 8.07e-26 | 105 |
| MS.gene27211.t1 | MTR_0003s0530 | 39.695 | 131 | 78 | 1 | 100 | 229 | 2 | 132 | 6.05e-25 | 100 |
| MS.gene27211.t1 | MTR_8g075500 | 85.417 | 48 | 7 | 0 | 32 | 79 | 173 | 220 | 2.40e-20 | 87.8 |
| MS.gene27211.t1 | MTR_2g058410 | 32.184 | 174 | 106 | 5 | 58 | 223 | 1 | 170 | 6.21e-18 | 81.6 |
| MS.gene27211.t1 | MTR_4g112840 | 33.945 | 109 | 72 | 0 | 123 | 231 | 54 | 162 | 5.28e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27211.t1 | AT3G51430 | 51.282 | 312 | 142 | 5 | 4 | 308 | 58 | 366 | 2.61e-106 | 315 |
| MS.gene27211.t1 | AT3G51430 | 51.282 | 312 | 140 | 6 | 4 | 308 | 58 | 364 | 9.06e-105 | 311 |
| MS.gene27211.t1 | AT3G51420 | 48.718 | 312 | 150 | 5 | 4 | 308 | 58 | 366 | 7.50e-103 | 306 |
| MS.gene27211.t1 | AT3G51450 | 49.679 | 312 | 147 | 5 | 4 | 308 | 58 | 366 | 5.20e-102 | 304 |
| MS.gene27211.t1 | AT3G51440 | 49.359 | 312 | 148 | 5 | 4 | 308 | 58 | 366 | 2.46e-101 | 302 |
| MS.gene27211.t1 | AT5G22020 | 33.022 | 321 | 183 | 7 | 15 | 303 | 75 | 395 | 1.74e-43 | 154 |
| MS.gene27211.t1 | AT5G22020 | 33.022 | 321 | 183 | 7 | 15 | 303 | 75 | 395 | 1.74e-43 | 154 |
| MS.gene27211.t1 | AT5G22020 | 33.022 | 321 | 183 | 7 | 15 | 303 | 75 | 395 | 1.74e-43 | 154 |
| MS.gene27211.t1 | AT1G08470 | 30.341 | 323 | 189 | 6 | 15 | 303 | 69 | 389 | 5.25e-39 | 142 |
| MS.gene27211.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 4.64e-36 | 134 |
| MS.gene27211.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 4.64e-36 | 134 |
| MS.gene27211.t1 | AT3G59530 | 32.463 | 268 | 147 | 7 | 2 | 237 | 69 | 334 | 4.64e-36 | 134 |
| MS.gene27211.t1 | AT3G57030 | 30.841 | 321 | 178 | 11 | 15 | 298 | 56 | 369 | 4.97e-34 | 128 |
| MS.gene27211.t1 | AT2G41290 | 29.787 | 329 | 182 | 11 | 13 | 298 | 49 | 371 | 2.31e-28 | 112 |
| MS.gene27211.t1 | AT3G57020 | 29.151 | 271 | 167 | 7 | 51 | 302 | 104 | 368 | 5.39e-26 | 106 |
| MS.gene27211.t1 | AT3G57020 | 27.922 | 308 | 196 | 8 | 15 | 302 | 53 | 354 | 5.55e-26 | 106 |
| MS.gene27211.t1 | AT3G57010 | 27.273 | 330 | 198 | 8 | 15 | 309 | 54 | 376 | 6.25e-26 | 106 |
| MS.gene27211.t1 | AT1G74010 | 34.091 | 220 | 122 | 6 | 15 | 212 | 37 | 255 | 1.87e-25 | 103 |
| MS.gene27211.t1 | AT1G74020 | 33.182 | 220 | 125 | 5 | 15 | 212 | 38 | 257 | 1.03e-23 | 99.8 |
| MS.gene27211.t1 | AT2G41300 | 28.854 | 253 | 163 | 7 | 27 | 266 | 101 | 349 | 1.10e-22 | 97.4 |
| MS.gene27211.t1 | AT1G74000 | 32.589 | 224 | 129 | 4 | 11 | 212 | 36 | 259 | 1.72e-22 | 95.9 |
Find 72 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACCAGTTAGTGATAATT+TGG | 0.099221 | 8.3:-28884838 | None:intergenic |
| TTTATTGTTGTTTAAATTGT+AGG | 0.271192 | 8.3:-28884945 | None:intergenic |
| GTTGCAGAGGGAAAATGTTT+TGG | 0.288224 | 8.3:+28882696 | MS.gene27211:CDS |
| TTCTTATACAAATTCAGATT+TGG | 0.295791 | 8.3:-28884759 | None:intergenic |
| TATTACAAAAGGGTATAAAA+TGG | 0.302630 | 8.3:-28884892 | None:intergenic |
| GATAAGGGTTTGGTTTATAC+TGG | 0.344254 | 8.3:+28882744 | MS.gene27211:CDS |
| CCATCATAATGAATGTTATC+AGG | 0.354766 | 8.3:-28884312 | None:intergenic |
| GGATCATAGTAGTGTGTAGT+AGG | 0.366734 | 8.3:-28884816 | None:intergenic |
| GGTGAGACTGCAACTCCATT+AGG | 0.368711 | 8.3:-28883781 | None:intergenic |
| TGCTAAAATACCCTTTCATT+AGG | 0.375501 | 8.3:+28884706 | MS.gene27211:CDS |
| GATCCCAAATTATCACTAAC+TGG | 0.383412 | 8.3:+28884834 | MS.gene27211:CDS |
| TGCAAGAAATATTACATAGA+TGG | 0.390150 | 8.3:+28884243 | MS.gene27211:CDS |
| CTAACTGGTGGGATAAAGAT+TGG | 0.398842 | 8.3:+28884849 | MS.gene27211:CDS |
| GTTTATACTGGTTGTGAAGA+TGG | 0.403082 | 8.3:+28882756 | MS.gene27211:CDS |
| CCACCAGTTAGTGATAATTT+GGG | 0.407324 | 8.3:-28884837 | None:intergenic |
| GCGTCGTATACCAAATCTTC+AGG | 0.409274 | 8.3:-28882720 | None:intergenic |
| AGGAGTTATCACTGTGGACT+TGG | 0.417990 | 8.3:+28884785 | MS.gene27211:CDS |
| CGGTGGAAGACCACTTGGTT+TGG | 0.418345 | 8.3:+28882833 | MS.gene27211:CDS |
| GGTTTCCTTCGAATACATCT+TGG | 0.418962 | 8.3:-28883687 | None:intergenic |
| GTACTTGTTAATGAGTTTGA+TGG | 0.425273 | 8.3:+28883568 | MS.gene27211:CDS |
| ATGAATCGGTGGTTGAAGAT+TGG | 0.435572 | 8.3:+28882802 | MS.gene27211:CDS |
| TTTGGTATACGACGCTGATA+AGG | 0.436669 | 8.3:+28882728 | MS.gene27211:CDS |
| GTTTAAATTGTAGGTAGAGC+AGG | 0.438638 | 8.3:-28884936 | None:intergenic |
| AGTGACCTCTACTTTCCTAA+TGG | 0.443237 | 8.3:+28883766 | MS.gene27211:CDS |
| ATACGACGCTGATAAGGGTT+TGG | 0.448748 | 8.3:+28882734 | MS.gene27211:CDS |
| TGAATGTTATCAGGCATGCC+AGG | 0.449090 | 8.3:-28884303 | None:intergenic |
| TGAATCGGTGGTTGAAGATT+GGG | 0.450708 | 8.3:+28882803 | MS.gene27211:CDS |
| ATATCAAGACGTATTACAAA+AGG | 0.451664 | 8.3:-28884903 | None:intergenic |
| AATCTGAATTTGTATAAGAA+TGG | 0.461591 | 8.3:+28884762 | MS.gene27211:CDS |
| TTTATACTGGTTGTGAAGAT+GGG | 0.461594 | 8.3:+28882757 | MS.gene27211:CDS |
| GGACATGGGCAGTACTTGAT+TGG | 0.462993 | 8.3:+28884333 | MS.gene27211:CDS |
| CCCTTTCATTAGGAAGGCTC+TGG | 0.465331 | 8.3:+28884716 | MS.gene27211:CDS |
| TAAAATTCAAATTAACAGAT+GGG | 0.471020 | 8.3:+28883593 | MS.gene27211:CDS |
| CCTGATAACATTCATTATGA+TGG | 0.474172 | 8.3:+28884312 | MS.gene27211:CDS |
| GAGAATAACGGTGAATGAAT+CGG | 0.487769 | 8.3:+28882788 | MS.gene27211:CDS |
| TTGGTATACGACGCTGATAA+GGG | 0.488468 | 8.3:+28882729 | MS.gene27211:CDS |
| TTAAAATTCAAATTAACAGA+TGG | 0.495758 | 8.3:+28883592 | MS.gene27211:CDS |
| TAACTGGTGGGATAAAGATT+GGG | 0.497109 | 8.3:+28884850 | MS.gene27211:CDS |
| AAAATACCCTTTCATTAGGA+AGG | 0.503520 | 8.3:+28884710 | MS.gene27211:CDS |
| TATGTCCAGTTCAAGAGAAA+AGG | 0.503928 | 8.3:-28884682 | None:intergenic |
| TATTGTTGCAGACGCAGATA+AGG | 0.512214 | 8.3:+28882878 | MS.gene27211:CDS |
| GCCAGAGCCTTCCTAATGAA+AGG | 0.517627 | 8.3:-28884717 | None:intergenic |
| AACACCGGTGGAAGACCACT+TGG | 0.523954 | 8.3:+28882828 | MS.gene27211:CDS |
| CTGAATTTGTATAAGAATGG+AGG | 0.542134 | 8.3:+28884765 | MS.gene27211:CDS |
| TATCAAGACGTATTACAAAA+GGG | 0.542456 | 8.3:-28884902 | None:intergenic |
| CCAGAGCCTTCCTAATGAAA+GGG | 0.547179 | 8.3:-28884716 | None:intergenic |
| GTATTCGAAGGAAACCCTAA+TGG | 0.553097 | 8.3:+28883694 | MS.gene27211:CDS |
| AAAATTCAAATTAACAGATG+GGG | 0.555348 | 8.3:+28883594 | MS.gene27211:CDS |
| TTCATCAAAATACTCATACA+AGG | 0.557190 | 8.3:+28883657 | MS.gene27211:CDS |
| ATACTGGTTGTGAAGATGGG+TGG | 0.569730 | 8.3:+28882760 | MS.gene27211:CDS |
| GTTATCACTGTGGACTTGGA+AGG | 0.570869 | 8.3:+28884789 | MS.gene27211:CDS |
| TCGAAGGAAACCCTAATGGT+AGG | 0.578998 | 8.3:+28883698 | MS.gene27211:CDS |
| CCAAATTATCACTAACTGGT+GGG | 0.579798 | 8.3:+28884838 | MS.gene27211:CDS |
| GAATGTTATCAGGCATGCCA+GGG | 0.588881 | 8.3:-28884302 | None:intergenic |
| CCCAAATTATCACTAACTGG+TGG | 0.591092 | 8.3:+28884837 | MS.gene27211:CDS |
| CAAACCAAGTGGTCTTCCAC+CGG | 0.592714 | 8.3:-28882832 | None:intergenic |
| AACATTCATTATGATGGACA+TGG | 0.593918 | 8.3:+28884318 | MS.gene27211:CDS |
| TATCTCCAAGATGTATTCGA+AGG | 0.595440 | 8.3:+28883682 | MS.gene27211:CDS |
| ATTGGGAATCACTTATACTG+TGG | 0.599269 | 8.3:+28884867 | MS.gene27211:CDS |
| GGATCTGAAAACGTTGCAGA+GGG | 0.601697 | 8.3:+28882684 | MS.gene27211:CDS |
| TGGGTGGATTAAGAGAATAA+CGG | 0.629145 | 8.3:+28882776 | MS.gene27211:CDS |
| AGGATCTGAAAACGTTGCAG+AGG | 0.644663 | 8.3:+28882683 | MS.gene27211:CDS |
| GTTGAAGATTGGGTTAACAC+CGG | 0.647511 | 8.3:+28882813 | MS.gene27211:CDS |
| GAAGATTGGGTTAACACCGG+TGG | 0.647988 | 8.3:+28882816 | MS.gene27211:CDS |
| ACATTCATTATGATGGACAT+GGG | 0.648960 | 8.3:+28884319 | MS.gene27211:CDS |
| CAACTCCATTAGGAAAGTAG+AGG | 0.650316 | 8.3:-28883771 | None:intergenic |
| CCATCAAAAGCCAAACCAAG+TGG | 0.660290 | 8.3:-28882843 | None:intergenic |
| GTACTTGATTGGAATAGCCA+CGG | 0.663511 | 8.3:+28884344 | MS.gene27211:CDS |
| GGGGTTGATGTAGCTCATGA+TGG | 0.666426 | 8.3:+28883613 | MS.gene27211:CDS |
| AATAACGGTGAATGAATCGG+TGG | 0.686646 | 8.3:+28882791 | MS.gene27211:CDS |
| TGTTATCAGGCATGCCAGGG+AGG | 0.693601 | 8.3:-28884299 | None:intergenic |
| GAATGGAGGAGTTATCACTG+TGG | 0.760629 | 8.3:+28884779 | MS.gene27211:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAACATGATATATAT+AGG | + | chr8.3:28883334-28883353 | MS.gene27211:intron | 10.0% |
| !! | TATATATATCATGTTTAAAT+TGG | - | chr8.3:28883335-28883354 | None:intergenic | 10.0% |
| !!! | AATTTTAAAGAATTTTATAC+TGG | - | chr8.3:28883874-28883893 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTGTTTTTTA+AGG | + | chr8.3:28882965-28882984 | MS.gene27211:intron | 10.0% |
| !! | AATAAGAAATTAATATCCAA+CGG | + | chr8.3:28883107-28883126 | MS.gene27211:intron | 15.0% |
| !! | ATTAATTAATGATAAGATAC+AGG | + | chr8.3:28883510-28883529 | MS.gene27211:intron | 15.0% |
| !! | CCAATTTAAACATATTATAT+AGG | + | chr8.3:28883156-28883175 | MS.gene27211:intron | 15.0% |
| !! | CCTATATAATATGTTTAAAT+TGG | - | chr8.3:28883159-28883178 | None:intergenic | 15.0% |
| !! | GTAACATTTAAATAAATGTT+AGG | + | chr8.3:28884113-28884132 | MS.gene27211:intron | 15.0% |
| !! | TAAAATTCAAATTAACAGAT+GGG | + | chr8.3:28883593-28883612 | MS.gene27211:CDS | 15.0% |
| !! | TTAAAATTCAAATTAACAGA+TGG | + | chr8.3:28883592-28883611 | MS.gene27211:CDS | 15.0% |
| !! | TTAATTAATGATAAGATACA+GGG | + | chr8.3:28883511-28883530 | MS.gene27211:intron | 15.0% |
| !!! | AAAAAAATATTTTATACCGT+TGG | - | chr8.3:28883126-28883145 | None:intergenic | 15.0% |
| !!! | GTAACTGATTTAAATTTTAT+GGG | + | chr8.3:28884201-28884220 | MS.gene27211:intron | 15.0% |
| !!! | TATTTTAATATGTTTGTTTG+AGG | - | chr8.3:28883091-28883110 | None:intergenic | 15.0% |
| !!! | TGTAACTGATTTAAATTTTA+TGG | + | chr8.3:28884200-28884219 | MS.gene27211:intron | 15.0% |
| !!! | TTTTTAAGGTAAAAAAGTTA+AGG | + | chr8.3:28882979-28882998 | MS.gene27211:intron | 15.0% |
| !! | AAAAGAATCTACAAAAACAT+AGG | - | chr8.3:28883425-28883444 | None:intergenic | 20.0% |
| !! | AAAATTCAAATTAACAGATG+GGG | + | chr8.3:28883594-28883613 | MS.gene27211:CDS | 20.0% |
| !! | AATCTGAATTTGTATAAGAA+TGG | + | chr8.3:28884762-28884781 | MS.gene27211:CDS | 20.0% |
| !! | ATTCTGAACAAAAAAATCAA+TGG | - | chr8.3:28883048-28883067 | None:intergenic | 20.0% |
| !! | GATAATACTATAAAATGTAG+TGG | - | chr8.3:28884164-28884183 | None:intergenic | 20.0% |
| !! | TTCTTATACAAATTCAGATT+TGG | - | chr8.3:28884762-28884781 | None:intergenic | 20.0% |
| !!! | AAAGTGCTAAATATATGTAT+TGG | + | chr8.3:28884613-28884632 | MS.gene27211:intron | 20.0% |
| !!! | AAATACCTTCTTTTTTTTGA+GGG | - | chr8.3:28883195-28883214 | None:intergenic | 20.0% |
| !!! | AGTAGTTTTGAAATAAATGT+TGG | + | chr8.3:28882903-28882922 | MS.gene27211:intron | 20.0% |
| !!! | TATTACAAAAGGGTATAAAA+TGG | - | chr8.3:28884895-28884914 | None:intergenic | 20.0% |
| !!! | TTTCATTTTTCAAATGTTAC+TGG | - | chr8.3:28884060-28884079 | None:intergenic | 20.0% |
| ! | ACAAATGTAACATCCAATTT+AGG | + | chr8.3:28884548-28884567 | MS.gene27211:intron | 25.0% |
| ! | ATACTGGTATATAGTAAACA+AGG | - | chr8.3:28883858-28883877 | None:intergenic | 25.0% |
| ! | ATATCAAGACGTATTACAAA+AGG | - | chr8.3:28884906-28884925 | None:intergenic | 25.0% |
| ! | CCTTCAAAAAAAACCTAAAT+TGG | - | chr8.3:28884564-28884583 | None:intergenic | 25.0% |
| ! | TATCAAGACGTATTACAAAA+GGG | - | chr8.3:28884905-28884924 | None:intergenic | 25.0% |
| ! | TGCAAGAAATATTACATAGA+TGG | + | chr8.3:28884243-28884262 | MS.gene27211:CDS | 25.0% |
| ! | TGTTATTGTTTGTGTATTTC+TGG | + | chr8.3:28884655-28884674 | MS.gene27211:intron | 25.0% |
| ! | TTCATCAAAATACTCATACA+AGG | + | chr8.3:28883657-28883676 | MS.gene27211:CDS | 25.0% |
| !! | ATCAATCGACAATCATATTT+TGG | - | chr8.3:28883395-28883414 | None:intergenic | 25.0% |
| !!! | CAAATACCTTCTTTTTTTTG+AGG | - | chr8.3:28883196-28883215 | None:intergenic | 25.0% |
| !!! | CCAATTTAGGTTTTTTTTGA+AGG | + | chr8.3:28884561-28884580 | MS.gene27211:intron | 25.0% |
| !!! | GAATATGTTTTTTCTGCAAA+TGG | + | chr8.3:28882930-28882949 | MS.gene27211:intron | 25.0% |
| AAAATACCCTTTCATTAGGA+AGG | + | chr8.3:28884710-28884729 | MS.gene27211:CDS | 30.0% | |
| AACTCAAAAACCTACCATTA+GGG | - | chr8.3:28883711-28883730 | None:intergenic | 30.0% | |
| ACTTGTCACAATTTAATCCA+AGG | - | chr8.3:28883468-28883487 | None:intergenic | 30.0% | |
| CAAGGAAATAAACAACTTAC+AGG | - | chr8.3:28883840-28883859 | None:intergenic | 30.0% | |
| CCATAAATAGTCTCTATACA+AGG | + | chr8.3:28884584-28884603 | MS.gene27211:intron | 30.0% | |
| CCATCATAATGAATGTTATC+AGG | - | chr8.3:28884315-28884334 | None:intergenic | 30.0% | |
| CCTGATAACATTCATTATGA+TGG | + | chr8.3:28884312-28884331 | MS.gene27211:CDS | 30.0% | |
| CCTTGTATAGAGACTATTTA+TGG | - | chr8.3:28884587-28884606 | None:intergenic | 30.0% | |
| CTGAATTTGTATAAGAATGG+AGG | + | chr8.3:28884765-28884784 | MS.gene27211:CDS | 30.0% | |
| GATATCCCTCAAAAAAAAGA+AGG | + | chr8.3:28883187-28883206 | MS.gene27211:intron | 30.0% | |
| TAACTCAAAAACCTACCATT+AGG | - | chr8.3:28883712-28883731 | None:intergenic | 30.0% | |
| TACATAGATGGCTCAAAAAA+AGG | + | chr8.3:28884255-28884274 | MS.gene27211:CDS | 30.0% | |
| TGAATACTTCTAGATGTTGT+TGG | + | chr8.3:28884002-28884021 | MS.gene27211:intron | 30.0% | |
| TGCTAAAATACCCTTTCATT+AGG | + | chr8.3:28884706-28884725 | MS.gene27211:CDS | 30.0% | |
| ! | GTACTTGTTAATGAGTTTGA+TGG | + | chr8.3:28883568-28883587 | MS.gene27211:CDS | 30.0% |
| ! | TTTATACTGGTTGTGAAGAT+GGG | + | chr8.3:28882757-28882776 | MS.gene27211:CDS | 30.0% |
| !! | AACATTCATTATGATGGACA+TGG | + | chr8.3:28884318-28884337 | MS.gene27211:CDS | 30.0% |
| !! | AAGACCACAAAATTTTGATC+TGG | - | chr8.3:28883805-28883824 | None:intergenic | 30.0% |
| !! | ACATTCATTATGATGGACAT+GGG | + | chr8.3:28884319-28884338 | MS.gene27211:CDS | 30.0% |
| !! | CTAGAAGTATTCAAGTAACA+TGG | - | chr8.3:28883995-28884014 | None:intergenic | 30.0% |
| !!! | AGAGTTGTCTTTTTTGTTGA+TGG | - | chr8.3:28883739-28883758 | None:intergenic | 30.0% |
| !!! | ATTTTGGCTAATCATACATG+AGG | - | chr8.3:28883379-28883398 | None:intergenic | 30.0% |
| !!! | TGAGTATTTTGATGAAGCAA+CGG | - | chr8.3:28883653-28883672 | None:intergenic | 30.0% |
| AAGATTAATCTCTGCAGTTG+TGG | + | chr8.3:28884467-28884486 | MS.gene27211:intron | 35.0% | |
| AGATAAACCGAAACAAATCC+TGG | - | chr8.3:28883016-28883035 | None:intergenic | 35.0% | |
| AGATTAATCTCTGCAGTTGT+GGG | + | chr8.3:28884468-28884487 | MS.gene27211:intron | 35.0% | |
| ATTGGGAATCACTTATACTG+TGG | + | chr8.3:28884867-28884886 | MS.gene27211:CDS | 35.0% | |
| CCAAATTATCACTAACTGGT+GGG | + | chr8.3:28884838-28884857 | MS.gene27211:CDS | 35.0% | |
| CCACCAGTTAGTGATAATTT+GGG | - | chr8.3:28884840-28884859 | None:intergenic | 35.0% | |
| GAGAATAACGGTGAATGAAT+CGG | + | chr8.3:28882788-28882807 | MS.gene27211:CDS | 35.0% | |
| GATAAACCGAAACAAATCCT+GGG | - | chr8.3:28883015-28883034 | None:intergenic | 35.0% | |
| GATCCCAAATTATCACTAAC+TGG | + | chr8.3:28884834-28884853 | MS.gene27211:CDS | 35.0% | |
| TAACTGGTGGGATAAAGATT+GGG | + | chr8.3:28884850-28884869 | MS.gene27211:CDS | 35.0% | |
| TATCTCCAAGATGTATTCGA+AGG | + | chr8.3:28883682-28883701 | MS.gene27211:CDS | 35.0% | |
| TATGTCCAGTTCAAGAGAAA+AGG | - | chr8.3:28884685-28884704 | None:intergenic | 35.0% | |
| TCTCTCGTGTTAAAAATCCT+TGG | + | chr8.3:28883448-28883467 | MS.gene27211:intron | 35.0% | |
| ! | CTCACCAGATCAAAATTTTG+TGG | + | chr8.3:28883798-28883817 | MS.gene27211:CDS | 35.0% |
| ! | GATAAGGGTTTGGTTTATAC+TGG | + | chr8.3:28882744-28882763 | MS.gene27211:CDS | 35.0% |
| ! | GTTTATACTGGTTGTGAAGA+TGG | + | chr8.3:28882756-28882775 | MS.gene27211:CDS | 35.0% |
| !! | ATGTTTTGGACCTGAAGATT+TGG | + | chr8.3:28882710-28882729 | MS.gene27211:CDS | 35.0% |
| !! | ATTGTTTGTGTATTTCTGGC+AGG | + | chr8.3:28884659-28884678 | MS.gene27211:intron | 35.0% |
| !! | ATTTTATGGGCTAATGTTGC+AGG | + | chr8.3:28884214-28884233 | MS.gene27211:intron | 35.0% |
| !! | TGGGTGGATTAAGAGAATAA+CGG | + | chr8.3:28882776-28882795 | MS.gene27211:CDS | 35.0% |
| !!! | TAGAGTTTTGTTGTTCCTTG+TGG | + | chr8.3:28884429-28884448 | MS.gene27211:intron | 35.0% |
| AATAACGGTGAATGAATCGG+TGG | + | chr8.3:28882791-28882810 | MS.gene27211:CDS | 40.0% | |
| AGTGACATCAAATGATACCG+TGG | - | chr8.3:28884364-28884383 | None:intergenic | 40.0% | |
| AGTGACCTCTACTTTCCTAA+TGG | + | chr8.3:28883766-28883785 | MS.gene27211:CDS | 40.0% | |
| ATGAATCGGTGGTTGAAGAT+TGG | + | chr8.3:28882802-28882821 | MS.gene27211:CDS | 40.0% | |
| CAACTCCATTAGGAAAGTAG+AGG | - | chr8.3:28883774-28883793 | None:intergenic | 40.0% | |
| CCCAAATTATCACTAACTGG+TGG | + | chr8.3:28884837-28884856 | MS.gene27211:CDS | 40.0% | |
| CCCACCAGTTAGTGATAATT+TGG | - | chr8.3:28884841-28884860 | None:intergenic | 40.0% | |
| CTAACTGGTGGGATAAAGAT+TGG | + | chr8.3:28884849-28884868 | MS.gene27211:CDS | 40.0% | |
| GGATCATAGTAGTGTGTAGT+AGG | - | chr8.3:28884819-28884838 | None:intergenic | 40.0% | |
| GGTTTCCTTCGAATACATCT+TGG | - | chr8.3:28883690-28883709 | None:intergenic | 40.0% | |
| GTACTTGATTGGAATAGCCA+CGG | + | chr8.3:28884344-28884363 | MS.gene27211:CDS | 40.0% | |
| GTATTCGAAGGAAACCCTAA+TGG | + | chr8.3:28883694-28883713 | MS.gene27211:CDS | 40.0% | |
| GTTAAGGTAATTACTGTCCC+AGG | + | chr8.3:28882995-28883014 | MS.gene27211:intron | 40.0% | |
| GTTGAAGATTGGGTTAACAC+CGG | + | chr8.3:28882813-28882832 | MS.gene27211:CDS | 40.0% | |
| TATTGTTGCAGACGCAGATA+AGG | + | chr8.3:28882878-28882897 | MS.gene27211:CDS | 40.0% | |
| TGAATCGGTGGTTGAAGATT+GGG | + | chr8.3:28882803-28882822 | MS.gene27211:CDS | 40.0% | |
| TTGGTATACGACGCTGATAA+GGG | + | chr8.3:28882729-28882748 | MS.gene27211:CDS | 40.0% | |
| TTTGGTATACGACGCTGATA+AGG | + | chr8.3:28882728-28882747 | MS.gene27211:CDS | 40.0% | |
| ! | GTTGCAGAGGGAAAATGTTT+TGG | + | chr8.3:28882696-28882715 | MS.gene27211:CDS | 40.0% |
| ! | TACTGTCCCAGGATTTGTTT+CGG | + | chr8.3:28883006-28883025 | MS.gene27211:intron | 40.0% |
| !! | TCGAGTTGAATATCACCACA+AGG | - | chr8.3:28884447-28884466 | None:intergenic | 40.0% |
| !!! | GGTTTGGCTTTTGATGGAAA+TGG | + | chr8.3:28882849-28882868 | MS.gene27211:CDS | 40.0% |
| AGGAGTTATCACTGTGGACT+TGG | + | chr8.3:28884785-28884804 | MS.gene27211:CDS | 45.0% | |
| AGGATCTGAAAACGTTGCAG+AGG | + | chr8.3:28882683-28882702 | MS.gene27211:CDS | 45.0% | |
| ATACGACGCTGATAAGGGTT+TGG | + | chr8.3:28882734-28882753 | MS.gene27211:CDS | 45.0% | |
| CCAGAGCCTTCCTAATGAAA+GGG | - | chr8.3:28884719-28884738 | None:intergenic | 45.0% | |
| CCATCAAAAGCCAAACCAAG+TGG | - | chr8.3:28882846-28882865 | None:intergenic | 45.0% | |
| GAATGGAGGAGTTATCACTG+TGG | + | chr8.3:28884779-28884798 | MS.gene27211:CDS | 45.0% | |
| GAATGTTATCAGGCATGCCA+GGG | - | chr8.3:28884305-28884324 | None:intergenic | 45.0% | |
| GCGTCGTATACCAAATCTTC+AGG | - | chr8.3:28882723-28882742 | None:intergenic | 45.0% | |
| GGATCTGAAAACGTTGCAGA+GGG | + | chr8.3:28882684-28882703 | MS.gene27211:CDS | 45.0% | |
| GTTATCACTGTGGACTTGGA+AGG | + | chr8.3:28884789-28884808 | MS.gene27211:CDS | 45.0% | |
| TCGAAGGAAACCCTAATGGT+AGG | + | chr8.3:28883698-28883717 | MS.gene27211:CDS | 45.0% | |
| TGAATGTTATCAGGCATGCC+AGG | - | chr8.3:28884306-28884325 | None:intergenic | 45.0% | |
| ! | ATACTGGTTGTGAAGATGGG+TGG | + | chr8.3:28882760-28882779 | MS.gene27211:CDS | 45.0% |
| !! | GAAAAGTTTTGTGACCTCCC+TGG | + | chr8.3:28884285-28884304 | MS.gene27211:CDS | 45.0% |
| !!! | CCACTTGGTTTGGCTTTTGA+TGG | + | chr8.3:28882843-28882862 | MS.gene27211:CDS | 45.0% |
| CAAACCAAGTGGTCTTCCAC+CGG | - | chr8.3:28882835-28882854 | None:intergenic | 50.0% | |
| CAGTTGTGGGCAGAAGATAC+CGG | + | chr8.3:28884481-28884500 | MS.gene27211:intron | 50.0% | |
| CCCTTTCATTAGGAAGGCTC+TGG | + | chr8.3:28884716-28884735 | MS.gene27211:CDS | 50.0% | |
| GAAGATTGGGTTAACACCGG+TGG | + | chr8.3:28882816-28882835 | MS.gene27211:CDS | 50.0% | |
| GCCAGAGCCTTCCTAATGAA+AGG | - | chr8.3:28884720-28884739 | None:intergenic | 50.0% | |
| GGACATGGGCAGTACTTGAT+TGG | + | chr8.3:28884333-28884352 | MS.gene27211:CDS | 50.0% | |
| GGTGAGACTGCAACTCCATT+AGG | - | chr8.3:28883784-28883803 | None:intergenic | 50.0% | |
| TCCCATTTGTGTGTGTGAGC+CGG | - | chr8.3:28884503-28884522 | None:intergenic | 50.0% | |
| ! | ACCGGCTCACACACACAAAT+GGG | + | chr8.3:28884499-28884518 | MS.gene27211:intron | 50.0% |
| ! | GCAGGCCTTTTCTCTTGAAC+TGG | + | chr8.3:28884677-28884696 | MS.gene27211:intron | 50.0% |
| !! | GGGGTTGATGTAGCTCATGA+TGG | + | chr8.3:28883613-28883632 | MS.gene27211:CDS | 50.0% |
| !! | TACCGGCTCACACACACAAA+TGG | + | chr8.3:28884498-28884517 | MS.gene27211:intron | 50.0% |
| AACACCGGTGGAAGACCACT+TGG | + | chr8.3:28882828-28882847 | MS.gene27211:CDS | 55.0% | |
| CGGTGGAAGACCACTTGGTT+TGG | + | chr8.3:28882833-28882852 | MS.gene27211:CDS | 55.0% | |
| TGTTATCAGGCATGCCAGGG+AGG | - | chr8.3:28884302-28884321 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28882675 | 28884956 | 28882675 | ID=MS.gene27211 |
| chr8.3 | mRNA | 28882675 | 28884956 | 28882675 | ID=MS.gene27211.t1;Parent=MS.gene27211 |
| chr8.3 | exon | 28882675 | 28882899 | 28882675 | ID=MS.gene27211.t1.exon1;Parent=MS.gene27211.t1 |
| chr8.3 | CDS | 28882675 | 28882899 | 28882675 | ID=cds.MS.gene27211.t1;Parent=MS.gene27211.t1 |
| chr8.3 | exon | 28883532 | 28883839 | 28883532 | ID=MS.gene27211.t1.exon2;Parent=MS.gene27211.t1 |
| chr8.3 | CDS | 28883532 | 28883839 | 28883532 | ID=cds.MS.gene27211.t1;Parent=MS.gene27211.t1 |
| chr8.3 | exon | 28884236 | 28884365 | 28884236 | ID=MS.gene27211.t1.exon3;Parent=MS.gene27211.t1 |
| chr8.3 | CDS | 28884236 | 28884365 | 28884236 | ID=cds.MS.gene27211.t1;Parent=MS.gene27211.t1 |
| chr8.3 | exon | 28884681 | 28884956 | 28884681 | ID=MS.gene27211.t1.exon4;Parent=MS.gene27211.t1 |
| chr8.3 | CDS | 28884681 | 28884956 | 28884681 | ID=cds.MS.gene27211.t1;Parent=MS.gene27211.t1 |
| Gene Sequence |
| Protein sequence |
