AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017558


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017558.t1 MTR_8g074210 56.952 374 150 5 21 394 11 373 1.78e-147 423
MS.gene017558.t1 MTR_8g074170 56.417 374 152 5 21 394 11 373 6.20e-146 419
MS.gene017558.t1 MTR_8g074270 56.150 374 153 5 21 394 11 373 3.92e-145 417
MS.gene017558.t1 MTR_8g074320 80.583 206 19 4 56 260 37 222 3.52e-111 325
MS.gene017558.t1 MTR_8g074290 96.364 110 2 1 261 370 45 152 3.48e-72 223
MS.gene017558.t1 MTR_2g042430 33.861 316 175 8 84 385 71 366 2.39e-49 171
MS.gene017558.t1 MTR_2g042370 33.227 313 176 8 84 382 59 352 7.13e-48 167
MS.gene017558.t1 MTR_1g075865 68.224 107 33 1 186 292 7 112 1.26e-47 159
MS.gene017558.t1 MTR_2g042420 32.692 312 178 10 84 382 52 344 3.77e-46 162
MS.gene017558.t1 MTR_4g050190 29.487 390 238 11 26 382 1 386 1.31e-41 151
MS.gene017558.t1 MTR_2g087780 34.981 263 147 6 80 322 64 322 6.29e-39 144
MS.gene017558.t1 MTR_2g099030 35.165 273 144 7 84 333 77 339 1.33e-37 140
MS.gene017558.t1 MTR_7g490330 36.122 263 144 8 86 328 44 302 2.76e-36 135
MS.gene017558.t1 MTR_7g090300 32.407 324 177 11 89 382 53 364 2.36e-34 131
MS.gene017558.t1 MTR_7g490350 34.130 293 155 10 28 300 2 276 2.86e-34 130
MS.gene017558.t1 MTR_7g090320 30.723 332 193 9 89 386 58 386 5.64e-33 127
MS.gene017558.t1 MTR_7g090310 30.723 332 192 10 89 386 58 385 8.39e-33 127
MS.gene017558.t1 MTR_5g091980 33.607 244 139 7 89 313 48 287 3.13e-30 119
MS.gene017558.t1 MTR_4g112670 33.906 233 131 6 87 300 37 265 4.19e-29 116
MS.gene017558.t1 MTR_4g112630 33.898 236 130 7 87 300 36 267 1.00e-26 109
MS.gene017558.t1 MTR_2g058450 32.328 232 135 6 89 301 40 268 2.22e-25 105
MS.gene017558.t1 MTR_4g112650 33.476 233 130 8 89 300 38 266 3.28e-25 105
MS.gene017558.t1 MTR_2g058410 36.364 176 89 7 136 300 1 164 2.03e-21 92.4
MS.gene017558.t1 MTR_0003s0530 35.833 120 75 2 182 300 2 120 3.03e-17 80.1
MS.gene017558.t1 MTR_8g075500 69.565 46 10 1 106 151 173 214 1.98e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017558.t1 AT3G51440 48.370 368 183 4 26 392 5 366 2.06e-120 354
MS.gene017558.t1 AT3G51450 46.196 368 191 4 26 392 5 366 5.43e-113 335
MS.gene017558.t1 AT3G51430 44.959 367 195 4 27 392 6 366 4.20e-111 330
MS.gene017558.t1 AT3G51430 45.232 367 192 5 27 392 6 364 1.62e-110 328
MS.gene017558.t1 AT3G51420 45.652 368 193 4 26 392 5 366 4.63e-110 327
MS.gene017558.t1 AT5G22020 35.000 260 145 6 80 320 66 320 1.17e-40 148
MS.gene017558.t1 AT5G22020 35.000 260 145 6 80 320 66 320 1.17e-40 148
MS.gene017558.t1 AT5G22020 35.000 260 145 6 80 320 66 320 1.17e-40 148
MS.gene017558.t1 AT1G08470 34.231 260 149 6 80 321 60 315 1.00e-37 140
MS.gene017558.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.15e-36 138
MS.gene017558.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.15e-36 138
MS.gene017558.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.15e-36 138
MS.gene017558.t1 AT3G57030 29.923 391 213 13 30 382 2 369 1.19e-35 134
MS.gene017558.t1 AT3G57020 29.538 325 201 9 87 388 51 370 1.35e-32 126
MS.gene017558.t1 AT3G57020 29.936 314 200 9 87 388 51 356 1.75e-30 120
MS.gene017558.t1 AT3G57010 28.107 338 199 12 87 393 52 376 1.93e-29 117
MS.gene017558.t1 AT1G74010 35.685 241 132 8 83 305 31 266 2.48e-29 116
MS.gene017558.t1 AT2G41290 28.682 387 220 12 31 381 4 370 3.80e-29 117
MS.gene017558.t1 AT1G74020 30.798 263 148 8 89 321 38 296 4.40e-27 110
MS.gene017558.t1 AT2G41300 28.824 340 214 11 64 386 64 392 4.71e-26 108
MS.gene017558.t1 AT1G74000 29.876 241 147 7 83 305 34 270 3.71e-24 102

Find 89 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACTCGATGGTTGAAAAT+TGG 0.257497 8.3:-28779081 MS.gene017558:CDS
CCAACATAATGAATATTATC+TGG 0.284932 8.3:+28777257 None:intergenic
AGACCAAAACTAGGGATTAA+TGG 0.305795 8.3:-28776578 MS.gene017558:CDS
GACCAAAACTAGGGATTAAT+GGG 0.325402 8.3:-28776577 MS.gene017558:CDS
GAAGAGGCGTCTTATATATA+CGG 0.329151 8.3:-28779152 MS.gene017558:CDS
TTATCATAAGCCAAGTCTTC+AGG 0.342505 8.3:+28779175 None:intergenic
GGGAGTTATAGTTGTGGATT+TGG 0.359842 8.3:-28776555 MS.gene017558:CDS
CGTAACCTCTACTTTGCTAA+TGG 0.369732 8.3:-28777818 MS.gene017558:CDS
AATATTCATTATGTTGGAAA+AGG 0.377022 8.3:-28777251 MS.gene017558:CDS
TGATTTCTACAACGATATCT+TGG 0.381372 8.3:-28777906 MS.gene017558:CDS
CTTATTAATCATAGCTTTCC+CGG 0.384597 8.3:-28779350 MS.gene017558:CDS
AAGACCACTTGGACTTGCTT+TGG 0.385209 8.3:-28779044 MS.gene017558:CDS
AGAAGAAACACTGCTTGATT+CGG 0.405140 8.3:+28779423 None:intergenic
CTGCTTGATTCGGACGTTGT+TGG 0.405730 8.3:+28779433 None:intergenic
GGACTTGCTTTGGAGAAAAC+TGG 0.410861 8.3:-28779034 MS.gene017558:CDS
GGGTTGACAGTTGGAGCCGT+GGG 0.426206 8.3:+28779247 None:intergenic
TGACTCGATGGTTGAAAATT+GGG 0.426472 8.3:-28779080 MS.gene017558:CDS
GTGGTGGAGGGTAGGGTAGA+TGG 0.431819 8.3:-28779199 MS.gene017558:CDS
TGGTTTCGAAGTCGTGGTGG+AGG 0.444446 8.3:-28779212 MS.gene017558:CDS
TCTGGCATGCCGGGTAGGTC+AGG 0.444845 8.3:+28777275 None:intergenic
CCAGATAATATTCATTATGT+TGG 0.449275 8.3:-28777257 MS.gene017558:CDS
AACTGGTTCACTTTCCAGCC+AGG 0.452617 8.3:-28779288 MS.gene017558:CDS
GGCAGTCAATAACTTCTCAA+TGG 0.453895 8.3:-28776664 MS.gene017558:intron
CACTTGAAATCAATGATAGT+TGG 0.463840 8.3:+28776501 None:intergenic
CATAGTTGCGGACGCTGACT+TGG 0.467767 8.3:-28779005 MS.gene017558:intron
GTTATAGTTGTGGATTTGGC+AGG 0.469059 8.3:-28776551 MS.gene017558:CDS
ATGAATATTATCTGGCATGC+CGG 0.469077 8.3:+28777265 None:intergenic
GCAGTCAATAACTTCTCAAT+GGG 0.474333 8.3:-28776663 MS.gene017558:intron
ATTAGCAAAGTAGAGGTTAC+GGG 0.474734 8.3:+28777820 None:intergenic
TCGAAGTCGTGGTGGAGGGT+AGG 0.476960 8.3:-28779207 MS.gene017558:CDS
CACACTGGTGGAAGACCACT+TGG 0.484706 8.3:-28779055 MS.gene017558:CDS
ACGAATTACTGTGAATGAAT+CGG 0.488343 8.3:-28779107 MS.gene017558:CDS
CGGGTTGACAGTTGGAGCCG+TGG 0.489834 8.3:+28779246 None:intergenic
CATTAGCAAAGTAGAGGTTA+CGG 0.491944 8.3:+28777819 None:intergenic
TTAAAATTCAAGTTAACAGA+TGG 0.493578 8.3:-28777992 MS.gene017558:CDS
AGTTGTGGATTTGGCAGGAA+AGG 0.494082 8.3:-28776546 MS.gene017558:CDS
CGAAACCAACCCACATGTGC+GGG 0.494965 8.3:+28779227 None:intergenic
CGAAGTCGTGGTGGAGGGTA+GGG 0.495803 8.3:-28779206 MS.gene017558:CDS
TGCGAGGGTAATTCCCTGGC+TGG 0.496628 8.3:+28779274 None:intergenic
CAAACTCGGACAGTTTGAAC+TGG 0.503297 8.3:-28779305 MS.gene017558:CDS
TGAATATTATCTGGCATGCC+GGG 0.508137 8.3:+28777266 None:intergenic
GTTGATAATTATATATATTG+TGG 0.512752 8.3:-28776470 MS.gene017558:CDS
ATACGGGTTGTGAGGATGGA+TGG 0.521741 8.3:-28779135 MS.gene017558:CDS
TAAAATTCAAGTTAACAGAT+GGG 0.522474 8.3:-28777991 MS.gene017558:CDS
GTTGACTGTTGTTCATGCTA+AGG 0.523650 8.3:+28776391 None:intergenic
ATATTCATTATGTTGGAAAA+GGG 0.525563 8.3:-28777250 MS.gene017558:CDS
GGGGTTGATGTAGGTGAAGA+TGG 0.525866 8.3:-28777971 MS.gene017558:CDS
AGAATAGCAGCTAATGCTAC+CGG 0.526322 8.3:+28779331 None:intergenic
CAACTATCATTGATTTCAAG+TGG 0.527805 8.3:-28776500 MS.gene017558:CDS
GGTTTGCGAGGGTAATTCCC+TGG 0.530556 8.3:+28779270 None:intergenic
TTGACTGTTGTTCATGCTAA+GGG 0.532172 8.3:+28776392 None:intergenic
GTTCATGCTAAGGGAAGTGC+AGG 0.532617 8.3:+28776401 None:intergenic
CAACTGTCAACCCGCACATG+TGG 0.533793 8.3:-28779237 MS.gene017558:CDS
ATATATACGGGTTGTGAGGA+TGG 0.540191 8.3:-28779139 MS.gene017558:CDS
CACATGTGCGGGTTGACAGT+TGG 0.545258 8.3:+28779238 None:intergenic
GGTAGATGGACCTGAAGACT+TGG 0.547168 8.3:-28779185 MS.gene017558:CDS
TTAACAGATGGGGTTGATGT+AGG 0.553836 8.3:-28777980 MS.gene017558:CDS
GTCAACCCGCACATGTGGGT+TGG 0.564146 8.3:-28779232 MS.gene017558:CDS
AAGAGGCGTCTTATATATAC+GGG 0.565621 8.3:-28779151 MS.gene017558:CDS
AAAATTCAAGTTAACAGATG+GGG 0.568583 8.3:-28777990 MS.gene017558:CDS
TATTATCTGGCATGCCGGGT+AGG 0.575920 8.3:+28777270 None:intergenic
TTCTACAACGATATCTTGGA+AGG 0.580448 8.3:-28777902 MS.gene017558:CDS
GGTTTCGAAGTCGTGGTGGA+GGG 0.584231 8.3:-28779211 MS.gene017558:CDS
GGTTGACAGTTGGAGCCGTG+GGG 0.584683 8.3:+28779248 None:intergenic
AACTATCATTGATTTCAAGT+GGG 0.585821 8.3:-28776499 MS.gene017558:CDS
GTTGACAGTTGGAGCCGTGG+GGG 0.589619 8.3:+28779249 None:intergenic
GAAAATTGGGTTCACACTGG+TGG 0.592486 8.3:-28779067 MS.gene017558:CDS
TGCAGAAAATATTACCTACA+AGG 0.602205 8.3:-28777329 MS.gene017558:CDS
AACTGTCAACCCGCACATGT+GGG 0.607719 8.3:-28779236 MS.gene017558:CDS
ACTGGTTCACTTTCCAGCCA+GGG 0.612059 8.3:-28779287 MS.gene017558:CDS
GAATAGCAGCTAATGCTACC+GGG 0.612763 8.3:+28779332 None:intergenic
GTGGGTTGGTTTCGAAGTCG+TGG 0.613298 8.3:-28779218 MS.gene017558:CDS
TCGAAACCAACCCACATGTG+CGG 0.613661 8.3:+28779226 None:intergenic
TTCTCCAAAGCAAGTCCAAG+TGG 0.616513 8.3:+28779040 None:intergenic
TCTTATATATACGGGTTGTG+AGG 0.617398 8.3:-28779143 MS.gene017558:CDS
TGAATCGGTGGCTGACTCGA+TGG 0.624849 8.3:-28779092 MS.gene017558:CDS
CAACTCCATTAGCAAAGTAG+AGG 0.625379 8.3:+28777813 None:intergenic
GGTTGGTTTCGAAGTCGTGG+TGG 0.628841 8.3:-28779215 MS.gene017558:CDS
ACTTGGCTTATGATAAGAAG+AGG 0.631927 8.3:-28779168 MS.gene017558:CDS
GCTGCTATTCTCTACAAACT+CGG 0.641756 8.3:-28779319 MS.gene017558:CDS
GTTGAAAATTGGGTTCACAC+TGG 0.650996 8.3:-28779070 MS.gene017558:CDS
AACTGGTGAACTCATAGTTG+CGG 0.661307 8.3:-28779017 MS.gene017558:CDS
ATCTTGGAAGGTGAACCTCA+TGG 0.664644 8.3:-28777890 MS.gene017558:CDS
ATTCTAGCAGATGAACATGA+CGG 0.671427 8.3:-28778016 MS.gene017558:CDS
ACCAAAACTAGGGATTAATG+GGG 0.671442 8.3:-28776576 MS.gene017558:CDS
AAAAGAAGGGAAGAAAACGA+AGG 0.706726 8.3:-28778044 MS.gene017558:CDS
AATTACTGTGAATGAATCGG+TGG 0.717583 8.3:-28779104 MS.gene017558:CDS
TAGCTCATGAATCTACCATG+AGG 0.726341 8.3:+28777875 None:intergenic
CCAAAACTAGGGATTAATGG+GGG 0.727146 8.3:-28776575 MS.gene017558:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTAATTATTTAAACA+AGG + chr8.3:28778445-28778464 None:intergenic 10.0%
!! AAGTTTAATTATTTAAACAA+GGG + chr8.3:28778444-28778463 None:intergenic 10.0%
!! AATAATTGTAATAATGATAT+AGG - chr8.3:28777759-28777778 MS.gene017558:intron 10.0%
!! AATCTCATAAATTATTTAAT+TGG - chr8.3:28777707-28777726 MS.gene017558:intron 10.0%
!! ATAATTGTAATAATGATATA+GGG - chr8.3:28777760-28777779 MS.gene017558:intron 10.0%
!! TTAATATAAAATATGATAGA+GGG - chr8.3:28777170-28777189 MS.gene017558:intron 10.0%
!! TTTAATATAAAATATGATAG+AGG - chr8.3:28777169-28777188 MS.gene017558:intron 10.0%
!!! AGATTATTTTTACAAAAAAA+TGG - chr8.3:28776899-28776918 MS.gene017558:intron 10.0%
!!! ATAATTTATGAGATTTATTT+TGG + chr8.3:28777702-28777721 None:intergenic 10.0%
!!! TAAAAAATTTGAACTTTTTA+AGG - chr8.3:28778773-28778792 MS.gene017558:intron 10.0%
!!! TTATCAAATTTTAAAATAAG+AGG + chr8.3:28777002-28777021 None:intergenic 10.0%
!! AATACTAACAAGTATTATAA+TGG + chr8.3:28778294-28778313 None:intergenic 15.0%
!! CGTAAAATAATAAAAATAGA+GGG + chr8.3:28776971-28776990 None:intergenic 15.0%
!! TATTCATTTGAAAAATTCTT+TGG - chr8.3:28777453-28777472 MS.gene017558:intron 15.0%
!! TCGTAAAATAATAAAAATAG+AGG + chr8.3:28776972-28776991 None:intergenic 15.0%
!! TTCTTTAACTAATATCTTAA+GGG + chr8.3:28778167-28778186 None:intergenic 15.0%
!! TTTCTTTAACTAATATCTTA+AGG + chr8.3:28778168-28778187 None:intergenic 15.0%
!!! AGGATTTTGTATAATTTATA+AGG + chr8.3:28778341-28778360 None:intergenic 15.0%
!!! ATTTTAAAATCTAACTGTTT+TGG + chr8.3:28777197-28777216 None:intergenic 15.0%
!!! ATTTTAGATCAAATATTTGA+TGG + chr8.3:28777034-28777053 None:intergenic 15.0%
!!! GTTGATAATTATATATATTG+TGG - chr8.3:28779375-28779394 MS.gene017558:CDS 15.0%
!!! TTGTTTTAACTCTAAAATAT+AGG + chr8.3:28777266-28777285 None:intergenic 15.0%
!!! TTTGAATAATTTTCAACTAT+TGG - chr8.3:28778399-28778418 MS.gene017558:intron 15.0%
!! AATATTCATTATGTTGGAAA+AGG - chr8.3:28778594-28778613 MS.gene017558:intron 20.0%
!! ATATTCATTATGTTGGAAAA+GGG - chr8.3:28778595-28778614 MS.gene017558:intron 20.0%
!! TATTTACATAGATCCATTAT+GGG + chr8.3:28776871-28776890 None:intergenic 20.0%
!!! TAAAATTCAAGTTAACAGAT+GGG - chr8.3:28777854-28777873 MS.gene017558:CDS 20.0%
!!! TTAAAATTCAAGTTAACAGA+TGG - chr8.3:28777853-28777872 MS.gene017558:CDS 20.0%
!!! TTATTATTACGAAGTTTTCA+CGG - chr8.3:28779029-28779048 MS.gene017558:CDS 20.0%
!!! TTTAAGTTTAATAACGGTTT+TGG - chr8.3:28776944-28776963 MS.gene017558:intron 20.0%
! AATAAATCCCTTATATACTC+TGG - chr8.3:28779106-28779125 MS.gene017558:CDS 25.0%
! AATTAAGAATCATCTTACCA+AGG + chr8.3:28778640-28778659 None:intergenic 25.0%
! ACTATAAACCAGAGTATATA+AGG + chr8.3:28779117-28779136 None:intergenic 25.0%
! ATGGAAAAATTTGATTGGAA+AGG - chr8.3:28778829-28778848 MS.gene017558:intron 25.0%
! CAATAACTGATTAATCAAAG+TGG - chr8.3:28778750-28778769 MS.gene017558:intron 25.0%
! CACTTTGATTAATCAGTTAT+TGG + chr8.3:28778752-28778771 None:intergenic 25.0%
! CCAACATAATGAATATTATC+TGG + chr8.3:28778591-28778610 None:intergenic 25.0%
! CCAGATAATATTCATTATGT+TGG - chr8.3:28778588-28778607 MS.gene017558:intron 25.0%
! CTATAAACCAGAGTATATAA+GGG + chr8.3:28779116-28779135 None:intergenic 25.0%
! CTATTTACATAGATCCATTA+TGG + chr8.3:28776872-28776891 None:intergenic 25.0%
! CTTTGACCAAAATTATTAAG+GGG + chr8.3:28778985-28779004 None:intergenic 25.0%
! GCTTTGACCAAAATTATTAA+GGG + chr8.3:28778986-28779005 None:intergenic 25.0%
! TAGTAAAAACGGATAATAAG+AGG + chr8.3:28779403-28779422 None:intergenic 25.0%
! TGCTTTGACCAAAATTATTA+AGG + chr8.3:28778987-28779006 None:intergenic 25.0%
!! AAAATTCAAGTTAACAGATG+GGG - chr8.3:28777855-28777874 MS.gene017558:CDS 25.0%
!! AAGAGTTCAATTGTAGTTTT+TGG - chr8.3:28778804-28778823 MS.gene017558:intron 25.0%
!! TAGACAACAAATTTTTGATC+AGG + chr8.3:28778066-28778085 None:intergenic 25.0%
!! TATAATTTTTGTGCTACACT+TGG - chr8.3:28778869-28778888 MS.gene017558:intron 25.0%
!! TTTTAGCCCCTTAATAATTT+TGG - chr8.3:28778976-28778995 MS.gene017558:intron 25.0%
!!! AACTATCATTGATTTCAAGT+GGG - chr8.3:28779346-28779365 MS.gene017558:CDS 25.0%
!!! ATGCATGTTTTGTGTTTTAA+TGG - chr8.3:28779160-28779179 MS.gene017558:CDS 25.0%
!!! ATTTTAGAAGACCAAAACTA+GGG - chr8.3:28779259-28779278 MS.gene017558:CDS 25.0%
!!! CTTATTATCCGTTTTTACTA+CGG - chr8.3:28779403-28779422 MS.gene017558:CDS 25.0%
!!! GTCAAAGCAAGATTATTTTT+GGG - chr8.3:28778998-28779017 MS.gene017558:intron 25.0%
!!! TTATGAAAGACTGATTTTAC+AGG - chr8.3:28778487-28778506 MS.gene017558:intron 25.0%
ACACTAACAATGACAATTGA+TGG + chr8.3:28778379-28778398 None:intergenic 30.0%
ACGAATTACTGTGAATGAAT+CGG - chr8.3:28776738-28776757 MS.gene017558:intron 30.0%
CACTTGAAATCAATGATAGT+TGG + chr8.3:28779347-28779366 None:intergenic 30.0%
CTATAATCCAGCAACAAAAA+AGG - chr8.3:28777990-28778009 MS.gene017558:CDS 30.0%
CTTATTAATCATAGCTTTCC+CGG - chr8.3:28776495-28776514 MS.gene017558:CDS 30.0%
GGAGTTAACTTATTTGATCA+TGG - chr8.3:28777728-28777747 MS.gene017558:intron 30.0%
TATAGGCTGAATTGCAATAT+TGG + chr8.3:28777249-28777268 None:intergenic 30.0%
TGATTTCTACAACGATATCT+TGG - chr8.3:28777939-28777958 MS.gene017558:CDS 30.0%
TGCAGAAAATATTACCTACA+AGG - chr8.3:28778516-28778535 MS.gene017558:intron 30.0%
TGGCTATGGAAAAATTTGAT+TGG - chr8.3:28778824-28778843 MS.gene017558:intron 30.0%
TGTCACATTGCATTTATGTT+CGG - chr8.3:28778953-28778972 MS.gene017558:intron 30.0%
TTAAACAAGGGCAAATTCTA+TGG + chr8.3:28778432-28778451 None:intergenic 30.0%
! GGTCAAAGCAAGATTATTTT+TGG - chr8.3:28778997-28779016 MS.gene017558:intron 30.0%
! TAATTTTCAACTATTGGTCG+CGG - chr8.3:28778405-28778424 MS.gene017558:intron 30.0%
! TTCTTTGGTACAAGTACTTT+TGG - chr8.3:28777468-28777487 MS.gene017558:intron 30.0%
!! CAACTATCATTGATTTCAAG+TGG - chr8.3:28779345-28779364 MS.gene017558:CDS 30.0%
!! CATTTTAGAAGACCAAAACT+AGG - chr8.3:28779258-28779277 MS.gene017558:CDS 30.0%
!!! AATGTAACCTTTTTTGTTGC+TGG + chr8.3:28778000-28778019 None:intergenic 30.0%
!!! CTTGTTTGTTTTGTTTGAAG+TGG + chr8.3:28776451-28776470 None:intergenic 30.0%
!!! TCAATTGTAGTTTTTGGCTA+TGG - chr8.3:28778810-28778829 MS.gene017558:intron 30.0%
AAAAGAAGGGAAGAAAACGA+AGG - chr8.3:28777801-28777820 MS.gene017558:CDS 35.0%
AATTACTGTGAATGAATCGG+TGG - chr8.3:28776741-28776760 MS.gene017558:intron 35.0%
ACATCTAGCCGTAGTAAAAA+CGG + chr8.3:28779414-28779433 None:intergenic 35.0%
ACCAAAACTAGGGATTAATG+GGG - chr8.3:28779269-28779288 MS.gene017558:CDS 35.0%
ACTTGGCTTATGATAAGAAG+AGG - chr8.3:28776677-28776696 MS.gene017558:intron 35.0%
AGAAGAAACACTGCTTGATT+CGG + chr8.3:28776425-28776444 None:intergenic 35.0%
AGACCAAAACTAGGGATTAA+TGG - chr8.3:28779267-28779286 MS.gene017558:CDS 35.0%
AGCATGTACTAGAGTAATGT+TGG - chr8.3:28777377-28777396 MS.gene017558:intron 35.0%
ATGAATATTATCTGGCATGC+CGG + chr8.3:28778583-28778602 None:intergenic 35.0%
ATTAGCAAAGTAGAGGTTAC+GGG + chr8.3:28778028-28778047 None:intergenic 35.0%
ATTCTAGCAGATGAACATGA+CGG - chr8.3:28777829-28777848 MS.gene017558:CDS 35.0%
CATTAGCAAAGTAGAGGTTA+CGG + chr8.3:28778029-28778048 None:intergenic 35.0%
GACCAAAACTAGGGATTAAT+GGG - chr8.3:28779268-28779287 MS.gene017558:CDS 35.0%
GATGGTTGAGACAAAATTCA+AGG + chr8.3:28778361-28778380 None:intergenic 35.0%
GCAGTCAATAACTTCTCAAT+GGG - chr8.3:28779182-28779201 MS.gene017558:CDS 35.0%
TGACTCGATGGTTGAAAATT+GGG - chr8.3:28776765-28776784 MS.gene017558:intron 35.0%
TGAGAGTGACACAAAAAGAA+GGG - chr8.3:28777788-28777807 MS.gene017558:CDS 35.0%
TTATCATAAGCCAAGTCTTC+AGG + chr8.3:28776673-28776692 None:intergenic 35.0%
TTCTACAACGATATCTTGGA+AGG - chr8.3:28777943-28777962 MS.gene017558:CDS 35.0%
TTGAGAGTGACACAAAAAGA+AGG - chr8.3:28777787-28777806 MS.gene017558:CDS 35.0%
! AGGGCAGTATTTTATTGGAA+CGG - chr8.3:28778614-28778633 MS.gene017558:intron 35.0%
! GGAAAAGGGCAGTATTTTAT+TGG - chr8.3:28778609-28778628 MS.gene017558:intron 35.0%
! TCTTATATATACGGGTTGTG+AGG - chr8.3:28776702-28776721 MS.gene017558:intron 35.0%
! TGTCGACTAAATTGAAGAGT+GGG + chr8.3:28778128-28778147 None:intergenic 35.0%
! TTGTCGACTAAATTGAAGAG+TGG + chr8.3:28778129-28778148 None:intergenic 35.0%
!! AAGACTGATTTTACAGGAGT+AGG - chr8.3:28778493-28778512 MS.gene017558:intron 35.0%
!! AAGAGGCGTCTTATATATAC+GGG - chr8.3:28776694-28776713 MS.gene017558:intron 35.0%
!! GAAGAGGCGTCTTATATATA+CGG - chr8.3:28776693-28776712 MS.gene017558:intron 35.0%
!!! GTTTGTTTTGTTTGAAGTGG+CGG + chr8.3:28776448-28776467 None:intergenic 35.0%
!!! TCGCCTATTCTTCCTTTTTT+GGG + chr8.3:28778543-28778562 None:intergenic 35.0%
!!! TTCGCCTATTCTTCCTTTTT+TGG + chr8.3:28778544-28778563 None:intergenic 35.0%
AACTGGTGAACTCATAGTTG+CGG - chr8.3:28776828-28776847 MS.gene017558:intron 40.0%
AGAATAGCAGCTAATGCTAC+CGG + chr8.3:28776517-28776536 None:intergenic 40.0%
CAACTCCATTAGCAAAGTAG+AGG + chr8.3:28778035-28778054 None:intergenic 40.0%
CCAAAACTAGGGATTAATGG+GGG - chr8.3:28779270-28779289 MS.gene017558:CDS 40.0%
CGTAACCTCTACTTTGCTAA+TGG - chr8.3:28778027-28778046 MS.gene017558:CDS 40.0%
CTTGGAATACTAGTGAACAG+TGG - chr8.3:28778887-28778906 MS.gene017558:intron 40.0%
GCATGTACACGTTGTATAGA+AGG - chr8.3:28777343-28777362 MS.gene017558:intron 40.0%
GCTGCTATTCTCTACAAACT+CGG - chr8.3:28776526-28776545 MS.gene017558:CDS 40.0%
GGCAGTCAATAACTTCTCAA+TGG - chr8.3:28779181-28779200 MS.gene017558:CDS 40.0%
GGGAGTTATAGTTGTGGATT+TGG - chr8.3:28779290-28779309 MS.gene017558:CDS 40.0%
GGTCCCAAAAAAGGAAGAAT+AGG - chr8.3:28778537-28778556 MS.gene017558:intron 40.0%
GTTATAGTTGTGGATTTGGC+AGG - chr8.3:28779294-28779313 MS.gene017558:CDS 40.0%
GTTGAAAATTGGGTTCACAC+TGG - chr8.3:28776775-28776794 MS.gene017558:intron 40.0%
TAATGGGGGAGTTATAGTTG+TGG - chr8.3:28779284-28779303 MS.gene017558:CDS 40.0%
TACCTACAAGGTCCCAAAAA+AGG - chr8.3:28778528-28778547 MS.gene017558:intron 40.0%
TAGCTCATGAATCTACCATG+AGG + chr8.3:28777973-28777992 None:intergenic 40.0%
TGAATATTATCTGGCATGCC+GGG + chr8.3:28778582-28778601 None:intergenic 40.0%
! ATATATACGGGTTGTGAGGA+TGG - chr8.3:28776706-28776725 MS.gene017558:intron 40.0%
! CTGACTCGATGGTTGAAAAT+TGG - chr8.3:28776764-28776783 MS.gene017558:intron 40.0%
! GTATTTTATTGGAACGGCCT+TGG - chr8.3:28778620-28778639 MS.gene017558:intron 40.0%
!! TGACTTGGTATGTCCCATAA+TGG - chr8.3:28776855-28776874 MS.gene017558:intron 40.0%
!! TTAACAGATGGGGTTGATGT+AGG - chr8.3:28777865-28777884 MS.gene017558:CDS 40.0%
!!! TTCCTTTTTTGGGACCTTGT+AGG + chr8.3:28778533-28778552 None:intergenic 40.0%
AGTTGTGGATTTGGCAGGAA+AGG - chr8.3:28779299-28779318 MS.gene017558:CDS 45.0%
ATCTTGGAAGGTGAACCTCA+TGG - chr8.3:28777955-28777974 MS.gene017558:CDS 45.0%
CAAACTCGGACAGTTTGAAC+TGG - chr8.3:28776540-28776559 MS.gene017558:CDS 45.0%
CCTTCGAAAAACTGCAGCAA+TGG - chr8.3:28779227-28779246 MS.gene017558:CDS 45.0%
GAAAATTGGGTTCACACTGG+TGG - chr8.3:28776778-28776797 MS.gene017558:intron 45.0%
GAATAGCAGCTAATGCTACC+GGG + chr8.3:28776516-28776535 None:intergenic 45.0%
TTCTCCAAAGCAAGTCCAAG+TGG + chr8.3:28776808-28776827 None:intergenic 45.0%
! AAGACCACTTGGACTTGCTT+TGG - chr8.3:28776801-28776820 MS.gene017558:intron 45.0%
! CCCCCATTAATCCCTAGTTT+TGG + chr8.3:28779273-28779292 None:intergenic 45.0%
! GAATTTTCTCCTGACCTACC+CGG - chr8.3:28778561-28778580 MS.gene017558:intron 45.0%
!! CCATTGCTGCAGTTTTTCGA+AGG + chr8.3:28779230-28779249 None:intergenic 45.0%
!! GCTGCAGTTTTTCGAAGGAA+AGG + chr8.3:28779225-28779244 None:intergenic 45.0%
!! GGACTTGCTTTGGAGAAAAC+TGG - chr8.3:28776811-28776830 MS.gene017558:intron 45.0%
!! TTAAAAAAAAAAAAAACTAT+AGG - chr8.3:28778916-28778935 MS.gene017558:intron 5.0%
!!! AATAATTAAACTTTTTTTTA+TGG - chr8.3:28778451-28778470 MS.gene017558:intron 5.0%
!!! ATAATTAAACTTTTTTTTAT+GGG - chr8.3:28778452-28778471 MS.gene017558:intron 5.0%
!!! TTTTATTTTAAGTTTAATAA+CGG - chr8.3:28776938-28776957 MS.gene017558:intron 5.0%
AACTGTCAACCCGCACATGT+GGG - chr8.3:28776609-28776628 MS.gene017558:CDS 50.0%
GGTAGATGGACCTGAAGACT+TGG - chr8.3:28776660-28776679 MS.gene017558:CDS 50.0%
TATTATCTGGCATGCCGGGT+AGG + chr8.3:28778578-28778597 None:intergenic 50.0%
TCGAAACCAACCCACATGTG+CGG + chr8.3:28776622-28776641 None:intergenic 50.0%
! AACTGGTTCACTTTCCAGCC+AGG - chr8.3:28776557-28776576 MS.gene017558:CDS 50.0%
! ACTGGTTCACTTTCCAGCCA+GGG - chr8.3:28776558-28776577 MS.gene017558:CDS 50.0%
! ATACGGGTTGTGAGGATGGA+TGG - chr8.3:28776710-28776729 MS.gene017558:intron 50.0%
!! CTGCTTGATTCGGACGTTGT+TGG + chr8.3:28776415-28776434 None:intergenic 50.0%
!! GGGGTTGATGTAGGTGAAGA+TGG - chr8.3:28777874-28777893 MS.gene017558:CDS 50.0%
ATTACCCTCGCAAACCCCCA+CGG - chr8.3:28776582-28776601 MS.gene017558:CDS 55.0%
CAACTGTCAACCCGCACATG+TGG - chr8.3:28776608-28776627 MS.gene017558:CDS 55.0%
CACACTGGTGGAAGACCACT+TGG - chr8.3:28776790-28776809 MS.gene017558:intron 55.0%
CGAAACCAACCCACATGTGC+GGG + chr8.3:28776621-28776640 None:intergenic 55.0%
GGTTTGCGAGGGTAATTCCC+TGG + chr8.3:28776578-28776597 None:intergenic 55.0%
TGGTTTCGAAGTCGTGGTGG+AGG - chr8.3:28776633-28776652 MS.gene017558:CDS 55.0%
! CACATGTGCGGGTTGACAGT+TGG + chr8.3:28776610-28776629 None:intergenic 55.0%
! CATAGTTGCGGACGCTGACT+TGG - chr8.3:28776840-28776859 MS.gene017558:intron 55.0%
! GGTTTCGAAGTCGTGGTGGA+GGG - chr8.3:28776634-28776653 MS.gene017558:CDS 55.0%
!! GGTTGGTTTCGAAGTCGTGG+TGG - chr8.3:28776630-28776649 MS.gene017558:CDS 55.0%
!! GTGGGTTGGTTTCGAAGTCG+TGG - chr8.3:28776627-28776646 MS.gene017558:CDS 55.0%
!! TGAATCGGTGGCTGACTCGA+TGG - chr8.3:28776753-28776772 MS.gene017558:intron 55.0%
GGGTTGACAGTTGGAGCCGT+GGG + chr8.3:28776601-28776620 None:intergenic 60.0%
GGTTGACAGTTGGAGCCGTG+GGG + chr8.3:28776600-28776619 None:intergenic 60.0%
GTCAACCCGCACATGTGGGT+TGG - chr8.3:28776613-28776632 MS.gene017558:CDS 60.0%
GTTGACAGTTGGAGCCGTGG+GGG + chr8.3:28776599-28776618 None:intergenic 60.0%
TGCGAGGGTAATTCCCTGGC+TGG + chr8.3:28776574-28776593 None:intergenic 60.0%
! CGAAGTCGTGGTGGAGGGTA+GGG - chr8.3:28776639-28776658 MS.gene017558:CDS 60.0%
! GTGGTGGAGGGTAGGGTAGA+TGG - chr8.3:28776646-28776665 MS.gene017558:CDS 60.0%
! TCGAAGTCGTGGTGGAGGGT+AGG - chr8.3:28776638-28776657 MS.gene017558:CDS 60.0%
TCTGGCATGCCGGGTAGGTC+AGG + chr8.3:28778573-28778592 None:intergenic 65.0%
! CGGGTTGACAGTTGGAGCCG+TGG + chr8.3:28776602-28776621 None:intergenic 65.0%
GGAGCCGTGGGGGTTTGCGA+GGG + chr8.3:28776589-28776608 None:intergenic 70.0%
TGGAGCCGTGGGGGTTTGCG+AGG + chr8.3:28776590-28776609 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 28776403 28779464 28776403 ID=MS.gene017558
chr8.3 mRNA 28776403 28779464 28776403 ID=MS.gene017558.t1;Parent=MS.gene017558
chr8.3 exon 28779006 28779464 28779006 ID=MS.gene017558.t1.exon1;Parent=MS.gene017558.t1
chr8.3 CDS 28779006 28779464 28779006 ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1
chr8.3 exon 28777767 28778086 28777767 ID=MS.gene017558.t1.exon2;Parent=MS.gene017558.t1
chr8.3 CDS 28777767 28778086 28777767 ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1
chr8.3 exon 28777226 28777358 28777226 ID=MS.gene017558.t1.exon3;Parent=MS.gene017558.t1
chr8.3 CDS 28777226 28777358 28777226 ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1
chr8.3 exon 28776403 28776681 28776403 ID=MS.gene017558.t1.exon4;Parent=MS.gene017558.t1
chr8.3 CDS 28776403 28776681 28776403 ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1
Gene Sequence

>MS.gene017558

ATGGCAAAACCAACAACGTCCGAATCAAGCAGTGTTTCTTCTCCGCCACTTCAAACAAAACAAACAAGATCATGTCTTTCAACAACAACAATCTTATTAATCATAGCTTTCCCGGTAGCATTAGCTGCTATTCTCTACAAACTCGGACAGTTTGAACTGGTTCACTTTCCAGCCAGGGAATTACCCTCGCAAACCCCCACGGCTCCAACTGTCAACCCGCACATGTGGGTTGGTTTCGAAGTCGTGGTGGAGGGTAGGGTAGATGGACCTGAAGACTTGGCTTATGATAAGAAGAGGCGTCTTATATATACGGGTTGTGAGGATGGATGGATCAAACGAATTACTGTGAATGAATCGGTGGCTGACTCGATGGTTGAAAATTGGGTTCACACTGGTGGAAGACCACTTGGACTTGCTTTGGAGAAAACTGGTGAACTCATAGTTGCGGACGCTGACTTGGTATGTCCCATAATGGATCTATGTAAATAGAGTCTTTAGATTATTTTTACAAAAAAATGGATTGAAAGAGAAAATGTTTTATTTTAAGTTTAATAACGGTTTTGGTCCCTCTATTTTTATTATTTTACGAAATTGATCCTCTTATTTTAAAATTTGATAATTTTAATCTCCATCAAATATTTGATCTAAAATACAATAATATGACATGTTTTAAATTATTTTTCTTACAATTTCATCGATATTAGTCTTTTCTCATCATCAAATCGATCATATATCACGTCATATAAAATATATTACATCATTAATTTTTAATATAAAATATGATAGAGGGACCAAAACAGTTAGATTTTAAAATAGATGAATCAATTCTGTCAAATAGTGTGACCAATATTGCAATTCAGCCTATATTTTAGAGTTAAAACAAGTTTAATTTTTTTATAGAATTTCTATTTTTTATCTTAGTTATTGTACGCACTTTTTAGCATGTACACGTTGTATAGAAGGTGAATATGCATAGCATGTACTAGAGTAATGTTGGTATGTACTGTACATGTCATTTAATCATTGAATGTCTTGTAAAATTTTTATATCTATTCATTTGAAAAATTCTTTGGTACAAGTACTTTTGGTACAACTAAAAATCTTTTACACTATCTCAAAATCGCAGTGAAAATTTTAATCATTATAATTTTACATTGTCAATAAATTTTAATCATTAGATTATTAAAAATGTTAGATTATATGTTTCAAAAAAAATGTTAGATTATATTGAAAATACGTTTGAGTTACGTCTATGATTGATTGTGATTTTGAGATAGTAAAAGAACTTTAGTTGTACCAAAATAAATCTCATAAATTATTTAATTGGAGTTAACTTATTTGATCATGGTGCACAATAATAATTGTAATAATGATATAGGGACTATTGAGAGTGACACAAAAAGAAGGGAAGAAAACGAAGGTTGAAATTCTAGCAGATGAACATGACGGATTAAAATTCAAGTTAACAGATGGGGTTGATGTAGGTGAAGATGGTACAATTTATTTCACAGACGCTACATACAAATACAATTTGAATGATTTCTACAACGATATCTTGGAAGGTGAACCTCATGGTAGATTCATGAGCTATAATCCAGCAACAAAAAAGGTTACATTGCTTGCCCGTAACCTCTACTTTGCTAATGGAGTTGCAGTTGCACCTGATCAAAAATTTGTTGTCTACTGTGAAACTGCTATGTAAGTAATAACAATTTAGTTGCACCCACTCTTCAATTTAGTCGACAATCATGCTATCGAGTACCCTTAAGATATTAGTTAAAGAAAATTCTAAAAAAAAAAAAACTTTTTTTTAAAAATAACATTTTAAATTTAAAGAAAAAAGAGTTGAATACACACTTTTTAATTATATTAGTTGTCTTAAATTGTGCCATTATAATACTTGTTAGTATTTTTTAATTATATATAATAAGTAATCCTTATAAATTATACAAAATCCTTGAATTTTGTCTCAACCATCAATTGTCATTGTTAGTGTTTTGAATAATTTTCAACTATTGGTCGCGGACCATAGAATTTGCCCTTGTTTAAATAATTAAACTTTTTTTTATGGGAATTAAACTTATTTATGAAAGACTGATTTTACAGGAGTAGGTGCAGAAAATATTACCTACAAGGTCCCAAAAAAGGAAGAATAGGCGAATTTTCTCCTGACCTACCCGGCATGCCAGATAATATTCATTATGTTGGAAAAGGGCAGTATTTTATTGGAACGGCCTTGGTAAGATGATTCTTAATTAACTTTAAATTTTCACTTAGTATTATCGACTAGTCTAAATTATTTATTTTGCATAGAGTTAAATGAGTTAAATATGTTTTTAAAGTTCACCAATAACTGATTAATCAAAGTGGTAAAAAATTTGAACTTTTTAAGGAAATGATCAAGAGTTCAATTGTAGTTTTTGGCTATGGAAAAATTTGATTGGAAAGGAAGAACTAACAAAATATTATAATTTTTGTGCTACACTTGGAATACTAGTGAACAGTGGTAATTATTAAAAAAAAAAAAAACTATAGGTTAATTACAAATTTTGTCACATTGCATTTATGTTCGGTTTTAGCCCCTTAATAATTTTGGTCAAAGCAAGATTATTTTTGGGTTAAAGTATTATTATTACGAAGTTTTCACGGTCGATTTGTAAAATTGCAAGATTTTTATAATGAAACAGTCATAACTAAAATCAAAATAAATCCCTTATATACTCTGGTTTATAGTATACAAAATGAAGCTGATTTCTAATGCATGTTTTGTGTTTTAATGGCAGTCAATAACTTCTCAATGGGAATTATTACTTAGATATCCTTTCCTTCGAAAAACTGCAGCAATGGTTACAAAGCATTTTAGAAGACCAAAACTAGGGATTAATGGGGGAGTTATAGTTGTGGATTTGGCAGGAAAGGTTACAGATCACTATTATGATCTCCAACTATCATTGATTTCAAGTGGGATCAAAGTTGATAATTATATATATTGTGGTTCCTCTTATTATCCGTTTTTACTACGGCTAGATGTGAAGCAATATCCTGCACTTCCCTTAGCATGA

Protein sequence

>MS.gene017558.t1

MAKPTTSESSSVSSPPLQTKQTRSCLSTTTILLIIAFPVALAAILYKLGQFELVHFPARELPSQTPTAPTVNPHMWVGFEVVVEGRVDGPEDLAYDKKRRLIYTGCEDGWIKRITVNESVADSMVENWVHTGGRPLGLALEKTGELIVADADLGLLRVTQKEGKKTKVEILADEHDGLKFKLTDGVDVGEDGTIYFTDATYKYNLNDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANGVAVAPDQKFVVYCETAMSRCRKYYLQGPKKGRIGEFSPDLPGMPDNIHYVGKGQYFIGTALSITSQWELLLRYPFLRKTAAMVTKHFRRPKLGINGGVIVVDLAGKVTDHYYDLQLSLISSGIKVDNYIYCGSSYYPFLLRLDVKQYPALPLA