Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017558.t1 | XP_004509419.2 | 74.3 | 393 | 96 | 2 | 6 | 395 | 3 | 393 | 1.70E-164 | 589 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017558.t1 | Q9SD05 | 48.4 | 368 | 183 | 4 | 26 | 392 | 5 | 366 | 3.4e-97 | 356.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017558.t1 | A0A1S2YSY8 | 74.3 | 393 | 96 | 2 | 6 | 395 | 3 | 393 | 1.2e-164 | 589.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene052008 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene032181 | PPI |
MS.gene017556 | MS.gene017558 | PPI |
MS.gene23776 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene017556 | PPI |
MS.gene037810 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene017554 | PPI |
MS.gene017558 | MS.gene98728 | PPI |
MS.gene017558 | MS.gene23780 | PPI |
MS.gene017558 | MS.gene35719 | PPI |
MS.gene017558 | MS.gene061292 | PPI |
MS.gene017558 | MS.gene23775 | PPI |
MS.gene059296 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene034366 | PPI |
MS.gene66625 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene017555 | PPI |
MS.gene017558 | MS.gene27211 | PPI |
MS.gene017558 | MS.gene27210 | PPI |
MS.gene017558 | MS.gene037812 | PPI |
MS.gene27212 | MS.gene017558 | PPI |
MS.gene017558 | MS.gene23779 | PPI |
MS.gene017558 | MS.gene85273 | PPI |
MS.gene017558 | MS.gene61630 | PPI |
MS.gene037809 | MS.gene017558 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017558.t1 | MTR_8g074210 | 56.952 | 374 | 150 | 5 | 21 | 394 | 11 | 373 | 1.78e-147 | 423 |
MS.gene017558.t1 | MTR_8g074170 | 56.417 | 374 | 152 | 5 | 21 | 394 | 11 | 373 | 6.20e-146 | 419 |
MS.gene017558.t1 | MTR_8g074270 | 56.150 | 374 | 153 | 5 | 21 | 394 | 11 | 373 | 3.92e-145 | 417 |
MS.gene017558.t1 | MTR_8g074320 | 80.583 | 206 | 19 | 4 | 56 | 260 | 37 | 222 | 3.52e-111 | 325 |
MS.gene017558.t1 | MTR_8g074290 | 96.364 | 110 | 2 | 1 | 261 | 370 | 45 | 152 | 3.48e-72 | 223 |
MS.gene017558.t1 | MTR_2g042430 | 33.861 | 316 | 175 | 8 | 84 | 385 | 71 | 366 | 2.39e-49 | 171 |
MS.gene017558.t1 | MTR_2g042370 | 33.227 | 313 | 176 | 8 | 84 | 382 | 59 | 352 | 7.13e-48 | 167 |
MS.gene017558.t1 | MTR_1g075865 | 68.224 | 107 | 33 | 1 | 186 | 292 | 7 | 112 | 1.26e-47 | 159 |
MS.gene017558.t1 | MTR_2g042420 | 32.692 | 312 | 178 | 10 | 84 | 382 | 52 | 344 | 3.77e-46 | 162 |
MS.gene017558.t1 | MTR_4g050190 | 29.487 | 390 | 238 | 11 | 26 | 382 | 1 | 386 | 1.31e-41 | 151 |
MS.gene017558.t1 | MTR_2g087780 | 34.981 | 263 | 147 | 6 | 80 | 322 | 64 | 322 | 6.29e-39 | 144 |
MS.gene017558.t1 | MTR_2g099030 | 35.165 | 273 | 144 | 7 | 84 | 333 | 77 | 339 | 1.33e-37 | 140 |
MS.gene017558.t1 | MTR_7g490330 | 36.122 | 263 | 144 | 8 | 86 | 328 | 44 | 302 | 2.76e-36 | 135 |
MS.gene017558.t1 | MTR_7g090300 | 32.407 | 324 | 177 | 11 | 89 | 382 | 53 | 364 | 2.36e-34 | 131 |
MS.gene017558.t1 | MTR_7g490350 | 34.130 | 293 | 155 | 10 | 28 | 300 | 2 | 276 | 2.86e-34 | 130 |
MS.gene017558.t1 | MTR_7g090320 | 30.723 | 332 | 193 | 9 | 89 | 386 | 58 | 386 | 5.64e-33 | 127 |
MS.gene017558.t1 | MTR_7g090310 | 30.723 | 332 | 192 | 10 | 89 | 386 | 58 | 385 | 8.39e-33 | 127 |
MS.gene017558.t1 | MTR_5g091980 | 33.607 | 244 | 139 | 7 | 89 | 313 | 48 | 287 | 3.13e-30 | 119 |
MS.gene017558.t1 | MTR_4g112670 | 33.906 | 233 | 131 | 6 | 87 | 300 | 37 | 265 | 4.19e-29 | 116 |
MS.gene017558.t1 | MTR_4g112630 | 33.898 | 236 | 130 | 7 | 87 | 300 | 36 | 267 | 1.00e-26 | 109 |
MS.gene017558.t1 | MTR_2g058450 | 32.328 | 232 | 135 | 6 | 89 | 301 | 40 | 268 | 2.22e-25 | 105 |
MS.gene017558.t1 | MTR_4g112650 | 33.476 | 233 | 130 | 8 | 89 | 300 | 38 | 266 | 3.28e-25 | 105 |
MS.gene017558.t1 | MTR_2g058410 | 36.364 | 176 | 89 | 7 | 136 | 300 | 1 | 164 | 2.03e-21 | 92.4 |
MS.gene017558.t1 | MTR_0003s0530 | 35.833 | 120 | 75 | 2 | 182 | 300 | 2 | 120 | 3.03e-17 | 80.1 |
MS.gene017558.t1 | MTR_8g075500 | 69.565 | 46 | 10 | 1 | 106 | 151 | 173 | 214 | 1.98e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017558.t1 | AT3G51440 | 48.370 | 368 | 183 | 4 | 26 | 392 | 5 | 366 | 2.06e-120 | 354 |
MS.gene017558.t1 | AT3G51450 | 46.196 | 368 | 191 | 4 | 26 | 392 | 5 | 366 | 5.43e-113 | 335 |
MS.gene017558.t1 | AT3G51430 | 44.959 | 367 | 195 | 4 | 27 | 392 | 6 | 366 | 4.20e-111 | 330 |
MS.gene017558.t1 | AT3G51430 | 45.232 | 367 | 192 | 5 | 27 | 392 | 6 | 364 | 1.62e-110 | 328 |
MS.gene017558.t1 | AT3G51420 | 45.652 | 368 | 193 | 4 | 26 | 392 | 5 | 366 | 4.63e-110 | 327 |
MS.gene017558.t1 | AT5G22020 | 35.000 | 260 | 145 | 6 | 80 | 320 | 66 | 320 | 1.17e-40 | 148 |
MS.gene017558.t1 | AT5G22020 | 35.000 | 260 | 145 | 6 | 80 | 320 | 66 | 320 | 1.17e-40 | 148 |
MS.gene017558.t1 | AT5G22020 | 35.000 | 260 | 145 | 6 | 80 | 320 | 66 | 320 | 1.17e-40 | 148 |
MS.gene017558.t1 | AT1G08470 | 34.231 | 260 | 149 | 6 | 80 | 321 | 60 | 315 | 1.00e-37 | 140 |
MS.gene017558.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.15e-36 | 138 |
MS.gene017558.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.15e-36 | 138 |
MS.gene017558.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.15e-36 | 138 |
MS.gene017558.t1 | AT3G57030 | 29.923 | 391 | 213 | 13 | 30 | 382 | 2 | 369 | 1.19e-35 | 134 |
MS.gene017558.t1 | AT3G57020 | 29.538 | 325 | 201 | 9 | 87 | 388 | 51 | 370 | 1.35e-32 | 126 |
MS.gene017558.t1 | AT3G57020 | 29.936 | 314 | 200 | 9 | 87 | 388 | 51 | 356 | 1.75e-30 | 120 |
MS.gene017558.t1 | AT3G57010 | 28.107 | 338 | 199 | 12 | 87 | 393 | 52 | 376 | 1.93e-29 | 117 |
MS.gene017558.t1 | AT1G74010 | 35.685 | 241 | 132 | 8 | 83 | 305 | 31 | 266 | 2.48e-29 | 116 |
MS.gene017558.t1 | AT2G41290 | 28.682 | 387 | 220 | 12 | 31 | 381 | 4 | 370 | 3.80e-29 | 117 |
MS.gene017558.t1 | AT1G74020 | 30.798 | 263 | 148 | 8 | 89 | 321 | 38 | 296 | 4.40e-27 | 110 |
MS.gene017558.t1 | AT2G41300 | 28.824 | 340 | 214 | 11 | 64 | 386 | 64 | 392 | 4.71e-26 | 108 |
MS.gene017558.t1 | AT1G74000 | 29.876 | 241 | 147 | 7 | 83 | 305 | 34 | 270 | 3.71e-24 | 102 |
Find 89 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGACTCGATGGTTGAAAAT+TGG | 0.257497 | 8.3:-28779081 | MS.gene017558:CDS |
CCAACATAATGAATATTATC+TGG | 0.284932 | 8.3:+28777257 | None:intergenic |
AGACCAAAACTAGGGATTAA+TGG | 0.305795 | 8.3:-28776578 | MS.gene017558:CDS |
GACCAAAACTAGGGATTAAT+GGG | 0.325402 | 8.3:-28776577 | MS.gene017558:CDS |
GAAGAGGCGTCTTATATATA+CGG | 0.329151 | 8.3:-28779152 | MS.gene017558:CDS |
TTATCATAAGCCAAGTCTTC+AGG | 0.342505 | 8.3:+28779175 | None:intergenic |
GGGAGTTATAGTTGTGGATT+TGG | 0.359842 | 8.3:-28776555 | MS.gene017558:CDS |
CGTAACCTCTACTTTGCTAA+TGG | 0.369732 | 8.3:-28777818 | MS.gene017558:CDS |
AATATTCATTATGTTGGAAA+AGG | 0.377022 | 8.3:-28777251 | MS.gene017558:CDS |
TGATTTCTACAACGATATCT+TGG | 0.381372 | 8.3:-28777906 | MS.gene017558:CDS |
CTTATTAATCATAGCTTTCC+CGG | 0.384597 | 8.3:-28779350 | MS.gene017558:CDS |
AAGACCACTTGGACTTGCTT+TGG | 0.385209 | 8.3:-28779044 | MS.gene017558:CDS |
AGAAGAAACACTGCTTGATT+CGG | 0.405140 | 8.3:+28779423 | None:intergenic |
CTGCTTGATTCGGACGTTGT+TGG | 0.405730 | 8.3:+28779433 | None:intergenic |
GGACTTGCTTTGGAGAAAAC+TGG | 0.410861 | 8.3:-28779034 | MS.gene017558:CDS |
GGGTTGACAGTTGGAGCCGT+GGG | 0.426206 | 8.3:+28779247 | None:intergenic |
TGACTCGATGGTTGAAAATT+GGG | 0.426472 | 8.3:-28779080 | MS.gene017558:CDS |
GTGGTGGAGGGTAGGGTAGA+TGG | 0.431819 | 8.3:-28779199 | MS.gene017558:CDS |
TGGTTTCGAAGTCGTGGTGG+AGG | 0.444446 | 8.3:-28779212 | MS.gene017558:CDS |
TCTGGCATGCCGGGTAGGTC+AGG | 0.444845 | 8.3:+28777275 | None:intergenic |
CCAGATAATATTCATTATGT+TGG | 0.449275 | 8.3:-28777257 | MS.gene017558:CDS |
AACTGGTTCACTTTCCAGCC+AGG | 0.452617 | 8.3:-28779288 | MS.gene017558:CDS |
GGCAGTCAATAACTTCTCAA+TGG | 0.453895 | 8.3:-28776664 | MS.gene017558:intron |
CACTTGAAATCAATGATAGT+TGG | 0.463840 | 8.3:+28776501 | None:intergenic |
CATAGTTGCGGACGCTGACT+TGG | 0.467767 | 8.3:-28779005 | MS.gene017558:intron |
GTTATAGTTGTGGATTTGGC+AGG | 0.469059 | 8.3:-28776551 | MS.gene017558:CDS |
ATGAATATTATCTGGCATGC+CGG | 0.469077 | 8.3:+28777265 | None:intergenic |
GCAGTCAATAACTTCTCAAT+GGG | 0.474333 | 8.3:-28776663 | MS.gene017558:intron |
ATTAGCAAAGTAGAGGTTAC+GGG | 0.474734 | 8.3:+28777820 | None:intergenic |
TCGAAGTCGTGGTGGAGGGT+AGG | 0.476960 | 8.3:-28779207 | MS.gene017558:CDS |
CACACTGGTGGAAGACCACT+TGG | 0.484706 | 8.3:-28779055 | MS.gene017558:CDS |
ACGAATTACTGTGAATGAAT+CGG | 0.488343 | 8.3:-28779107 | MS.gene017558:CDS |
CGGGTTGACAGTTGGAGCCG+TGG | 0.489834 | 8.3:+28779246 | None:intergenic |
CATTAGCAAAGTAGAGGTTA+CGG | 0.491944 | 8.3:+28777819 | None:intergenic |
TTAAAATTCAAGTTAACAGA+TGG | 0.493578 | 8.3:-28777992 | MS.gene017558:CDS |
AGTTGTGGATTTGGCAGGAA+AGG | 0.494082 | 8.3:-28776546 | MS.gene017558:CDS |
CGAAACCAACCCACATGTGC+GGG | 0.494965 | 8.3:+28779227 | None:intergenic |
CGAAGTCGTGGTGGAGGGTA+GGG | 0.495803 | 8.3:-28779206 | MS.gene017558:CDS |
TGCGAGGGTAATTCCCTGGC+TGG | 0.496628 | 8.3:+28779274 | None:intergenic |
CAAACTCGGACAGTTTGAAC+TGG | 0.503297 | 8.3:-28779305 | MS.gene017558:CDS |
TGAATATTATCTGGCATGCC+GGG | 0.508137 | 8.3:+28777266 | None:intergenic |
GTTGATAATTATATATATTG+TGG | 0.512752 | 8.3:-28776470 | MS.gene017558:CDS |
ATACGGGTTGTGAGGATGGA+TGG | 0.521741 | 8.3:-28779135 | MS.gene017558:CDS |
TAAAATTCAAGTTAACAGAT+GGG | 0.522474 | 8.3:-28777991 | MS.gene017558:CDS |
GTTGACTGTTGTTCATGCTA+AGG | 0.523650 | 8.3:+28776391 | None:intergenic |
ATATTCATTATGTTGGAAAA+GGG | 0.525563 | 8.3:-28777250 | MS.gene017558:CDS |
GGGGTTGATGTAGGTGAAGA+TGG | 0.525866 | 8.3:-28777971 | MS.gene017558:CDS |
AGAATAGCAGCTAATGCTAC+CGG | 0.526322 | 8.3:+28779331 | None:intergenic |
CAACTATCATTGATTTCAAG+TGG | 0.527805 | 8.3:-28776500 | MS.gene017558:CDS |
GGTTTGCGAGGGTAATTCCC+TGG | 0.530556 | 8.3:+28779270 | None:intergenic |
TTGACTGTTGTTCATGCTAA+GGG | 0.532172 | 8.3:+28776392 | None:intergenic |
GTTCATGCTAAGGGAAGTGC+AGG | 0.532617 | 8.3:+28776401 | None:intergenic |
CAACTGTCAACCCGCACATG+TGG | 0.533793 | 8.3:-28779237 | MS.gene017558:CDS |
ATATATACGGGTTGTGAGGA+TGG | 0.540191 | 8.3:-28779139 | MS.gene017558:CDS |
CACATGTGCGGGTTGACAGT+TGG | 0.545258 | 8.3:+28779238 | None:intergenic |
GGTAGATGGACCTGAAGACT+TGG | 0.547168 | 8.3:-28779185 | MS.gene017558:CDS |
TTAACAGATGGGGTTGATGT+AGG | 0.553836 | 8.3:-28777980 | MS.gene017558:CDS |
GTCAACCCGCACATGTGGGT+TGG | 0.564146 | 8.3:-28779232 | MS.gene017558:CDS |
AAGAGGCGTCTTATATATAC+GGG | 0.565621 | 8.3:-28779151 | MS.gene017558:CDS |
AAAATTCAAGTTAACAGATG+GGG | 0.568583 | 8.3:-28777990 | MS.gene017558:CDS |
TATTATCTGGCATGCCGGGT+AGG | 0.575920 | 8.3:+28777270 | None:intergenic |
TTCTACAACGATATCTTGGA+AGG | 0.580448 | 8.3:-28777902 | MS.gene017558:CDS |
GGTTTCGAAGTCGTGGTGGA+GGG | 0.584231 | 8.3:-28779211 | MS.gene017558:CDS |
GGTTGACAGTTGGAGCCGTG+GGG | 0.584683 | 8.3:+28779248 | None:intergenic |
AACTATCATTGATTTCAAGT+GGG | 0.585821 | 8.3:-28776499 | MS.gene017558:CDS |
GTTGACAGTTGGAGCCGTGG+GGG | 0.589619 | 8.3:+28779249 | None:intergenic |
GAAAATTGGGTTCACACTGG+TGG | 0.592486 | 8.3:-28779067 | MS.gene017558:CDS |
TGCAGAAAATATTACCTACA+AGG | 0.602205 | 8.3:-28777329 | MS.gene017558:CDS |
AACTGTCAACCCGCACATGT+GGG | 0.607719 | 8.3:-28779236 | MS.gene017558:CDS |
ACTGGTTCACTTTCCAGCCA+GGG | 0.612059 | 8.3:-28779287 | MS.gene017558:CDS |
GAATAGCAGCTAATGCTACC+GGG | 0.612763 | 8.3:+28779332 | None:intergenic |
GTGGGTTGGTTTCGAAGTCG+TGG | 0.613298 | 8.3:-28779218 | MS.gene017558:CDS |
TCGAAACCAACCCACATGTG+CGG | 0.613661 | 8.3:+28779226 | None:intergenic |
TTCTCCAAAGCAAGTCCAAG+TGG | 0.616513 | 8.3:+28779040 | None:intergenic |
TCTTATATATACGGGTTGTG+AGG | 0.617398 | 8.3:-28779143 | MS.gene017558:CDS |
TGAATCGGTGGCTGACTCGA+TGG | 0.624849 | 8.3:-28779092 | MS.gene017558:CDS |
CAACTCCATTAGCAAAGTAG+AGG | 0.625379 | 8.3:+28777813 | None:intergenic |
GGTTGGTTTCGAAGTCGTGG+TGG | 0.628841 | 8.3:-28779215 | MS.gene017558:CDS |
ACTTGGCTTATGATAAGAAG+AGG | 0.631927 | 8.3:-28779168 | MS.gene017558:CDS |
GCTGCTATTCTCTACAAACT+CGG | 0.641756 | 8.3:-28779319 | MS.gene017558:CDS |
GTTGAAAATTGGGTTCACAC+TGG | 0.650996 | 8.3:-28779070 | MS.gene017558:CDS |
AACTGGTGAACTCATAGTTG+CGG | 0.661307 | 8.3:-28779017 | MS.gene017558:CDS |
ATCTTGGAAGGTGAACCTCA+TGG | 0.664644 | 8.3:-28777890 | MS.gene017558:CDS |
ATTCTAGCAGATGAACATGA+CGG | 0.671427 | 8.3:-28778016 | MS.gene017558:CDS |
ACCAAAACTAGGGATTAATG+GGG | 0.671442 | 8.3:-28776576 | MS.gene017558:CDS |
AAAAGAAGGGAAGAAAACGA+AGG | 0.706726 | 8.3:-28778044 | MS.gene017558:CDS |
AATTACTGTGAATGAATCGG+TGG | 0.717583 | 8.3:-28779104 | MS.gene017558:CDS |
TAGCTCATGAATCTACCATG+AGG | 0.726341 | 8.3:+28777875 | None:intergenic |
CCAAAACTAGGGATTAATGG+GGG | 0.727146 | 8.3:-28776575 | MS.gene017558:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGTTTAATTATTTAAACA+AGG | + | chr8.3:28778445-28778464 | None:intergenic | 10.0% |
!! | AAGTTTAATTATTTAAACAA+GGG | + | chr8.3:28778444-28778463 | None:intergenic | 10.0% |
!! | AATAATTGTAATAATGATAT+AGG | - | chr8.3:28777759-28777778 | MS.gene017558:intron | 10.0% |
!! | AATCTCATAAATTATTTAAT+TGG | - | chr8.3:28777707-28777726 | MS.gene017558:intron | 10.0% |
!! | ATAATTGTAATAATGATATA+GGG | - | chr8.3:28777760-28777779 | MS.gene017558:intron | 10.0% |
!! | TTAATATAAAATATGATAGA+GGG | - | chr8.3:28777170-28777189 | MS.gene017558:intron | 10.0% |
!! | TTTAATATAAAATATGATAG+AGG | - | chr8.3:28777169-28777188 | MS.gene017558:intron | 10.0% |
!!! | AGATTATTTTTACAAAAAAA+TGG | - | chr8.3:28776899-28776918 | MS.gene017558:intron | 10.0% |
!!! | ATAATTTATGAGATTTATTT+TGG | + | chr8.3:28777702-28777721 | None:intergenic | 10.0% |
!!! | TAAAAAATTTGAACTTTTTA+AGG | - | chr8.3:28778773-28778792 | MS.gene017558:intron | 10.0% |
!!! | TTATCAAATTTTAAAATAAG+AGG | + | chr8.3:28777002-28777021 | None:intergenic | 10.0% |
!! | AATACTAACAAGTATTATAA+TGG | + | chr8.3:28778294-28778313 | None:intergenic | 15.0% |
!! | CGTAAAATAATAAAAATAGA+GGG | + | chr8.3:28776971-28776990 | None:intergenic | 15.0% |
!! | TATTCATTTGAAAAATTCTT+TGG | - | chr8.3:28777453-28777472 | MS.gene017558:intron | 15.0% |
!! | TCGTAAAATAATAAAAATAG+AGG | + | chr8.3:28776972-28776991 | None:intergenic | 15.0% |
!! | TTCTTTAACTAATATCTTAA+GGG | + | chr8.3:28778167-28778186 | None:intergenic | 15.0% |
!! | TTTCTTTAACTAATATCTTA+AGG | + | chr8.3:28778168-28778187 | None:intergenic | 15.0% |
!!! | AGGATTTTGTATAATTTATA+AGG | + | chr8.3:28778341-28778360 | None:intergenic | 15.0% |
!!! | ATTTTAAAATCTAACTGTTT+TGG | + | chr8.3:28777197-28777216 | None:intergenic | 15.0% |
!!! | ATTTTAGATCAAATATTTGA+TGG | + | chr8.3:28777034-28777053 | None:intergenic | 15.0% |
!!! | GTTGATAATTATATATATTG+TGG | - | chr8.3:28779375-28779394 | MS.gene017558:CDS | 15.0% |
!!! | TTGTTTTAACTCTAAAATAT+AGG | + | chr8.3:28777266-28777285 | None:intergenic | 15.0% |
!!! | TTTGAATAATTTTCAACTAT+TGG | - | chr8.3:28778399-28778418 | MS.gene017558:intron | 15.0% |
!! | AATATTCATTATGTTGGAAA+AGG | - | chr8.3:28778594-28778613 | MS.gene017558:intron | 20.0% |
!! | ATATTCATTATGTTGGAAAA+GGG | - | chr8.3:28778595-28778614 | MS.gene017558:intron | 20.0% |
!! | TATTTACATAGATCCATTAT+GGG | + | chr8.3:28776871-28776890 | None:intergenic | 20.0% |
!!! | TAAAATTCAAGTTAACAGAT+GGG | - | chr8.3:28777854-28777873 | MS.gene017558:CDS | 20.0% |
!!! | TTAAAATTCAAGTTAACAGA+TGG | - | chr8.3:28777853-28777872 | MS.gene017558:CDS | 20.0% |
!!! | TTATTATTACGAAGTTTTCA+CGG | - | chr8.3:28779029-28779048 | MS.gene017558:CDS | 20.0% |
!!! | TTTAAGTTTAATAACGGTTT+TGG | - | chr8.3:28776944-28776963 | MS.gene017558:intron | 20.0% |
! | AATAAATCCCTTATATACTC+TGG | - | chr8.3:28779106-28779125 | MS.gene017558:CDS | 25.0% |
! | AATTAAGAATCATCTTACCA+AGG | + | chr8.3:28778640-28778659 | None:intergenic | 25.0% |
! | ACTATAAACCAGAGTATATA+AGG | + | chr8.3:28779117-28779136 | None:intergenic | 25.0% |
! | ATGGAAAAATTTGATTGGAA+AGG | - | chr8.3:28778829-28778848 | MS.gene017558:intron | 25.0% |
! | CAATAACTGATTAATCAAAG+TGG | - | chr8.3:28778750-28778769 | MS.gene017558:intron | 25.0% |
! | CACTTTGATTAATCAGTTAT+TGG | + | chr8.3:28778752-28778771 | None:intergenic | 25.0% |
! | CCAACATAATGAATATTATC+TGG | + | chr8.3:28778591-28778610 | None:intergenic | 25.0% |
! | CCAGATAATATTCATTATGT+TGG | - | chr8.3:28778588-28778607 | MS.gene017558:intron | 25.0% |
! | CTATAAACCAGAGTATATAA+GGG | + | chr8.3:28779116-28779135 | None:intergenic | 25.0% |
! | CTATTTACATAGATCCATTA+TGG | + | chr8.3:28776872-28776891 | None:intergenic | 25.0% |
! | CTTTGACCAAAATTATTAAG+GGG | + | chr8.3:28778985-28779004 | None:intergenic | 25.0% |
! | GCTTTGACCAAAATTATTAA+GGG | + | chr8.3:28778986-28779005 | None:intergenic | 25.0% |
! | TAGTAAAAACGGATAATAAG+AGG | + | chr8.3:28779403-28779422 | None:intergenic | 25.0% |
! | TGCTTTGACCAAAATTATTA+AGG | + | chr8.3:28778987-28779006 | None:intergenic | 25.0% |
!! | AAAATTCAAGTTAACAGATG+GGG | - | chr8.3:28777855-28777874 | MS.gene017558:CDS | 25.0% |
!! | AAGAGTTCAATTGTAGTTTT+TGG | - | chr8.3:28778804-28778823 | MS.gene017558:intron | 25.0% |
!! | TAGACAACAAATTTTTGATC+AGG | + | chr8.3:28778066-28778085 | None:intergenic | 25.0% |
!! | TATAATTTTTGTGCTACACT+TGG | - | chr8.3:28778869-28778888 | MS.gene017558:intron | 25.0% |
!! | TTTTAGCCCCTTAATAATTT+TGG | - | chr8.3:28778976-28778995 | MS.gene017558:intron | 25.0% |
!!! | AACTATCATTGATTTCAAGT+GGG | - | chr8.3:28779346-28779365 | MS.gene017558:CDS | 25.0% |
!!! | ATGCATGTTTTGTGTTTTAA+TGG | - | chr8.3:28779160-28779179 | MS.gene017558:CDS | 25.0% |
!!! | ATTTTAGAAGACCAAAACTA+GGG | - | chr8.3:28779259-28779278 | MS.gene017558:CDS | 25.0% |
!!! | CTTATTATCCGTTTTTACTA+CGG | - | chr8.3:28779403-28779422 | MS.gene017558:CDS | 25.0% |
!!! | GTCAAAGCAAGATTATTTTT+GGG | - | chr8.3:28778998-28779017 | MS.gene017558:intron | 25.0% |
!!! | TTATGAAAGACTGATTTTAC+AGG | - | chr8.3:28778487-28778506 | MS.gene017558:intron | 25.0% |
ACACTAACAATGACAATTGA+TGG | + | chr8.3:28778379-28778398 | None:intergenic | 30.0% | |
ACGAATTACTGTGAATGAAT+CGG | - | chr8.3:28776738-28776757 | MS.gene017558:intron | 30.0% | |
CACTTGAAATCAATGATAGT+TGG | + | chr8.3:28779347-28779366 | None:intergenic | 30.0% | |
CTATAATCCAGCAACAAAAA+AGG | - | chr8.3:28777990-28778009 | MS.gene017558:CDS | 30.0% | |
CTTATTAATCATAGCTTTCC+CGG | - | chr8.3:28776495-28776514 | MS.gene017558:CDS | 30.0% | |
GGAGTTAACTTATTTGATCA+TGG | - | chr8.3:28777728-28777747 | MS.gene017558:intron | 30.0% | |
TATAGGCTGAATTGCAATAT+TGG | + | chr8.3:28777249-28777268 | None:intergenic | 30.0% | |
TGATTTCTACAACGATATCT+TGG | - | chr8.3:28777939-28777958 | MS.gene017558:CDS | 30.0% | |
TGCAGAAAATATTACCTACA+AGG | - | chr8.3:28778516-28778535 | MS.gene017558:intron | 30.0% | |
TGGCTATGGAAAAATTTGAT+TGG | - | chr8.3:28778824-28778843 | MS.gene017558:intron | 30.0% | |
TGTCACATTGCATTTATGTT+CGG | - | chr8.3:28778953-28778972 | MS.gene017558:intron | 30.0% | |
TTAAACAAGGGCAAATTCTA+TGG | + | chr8.3:28778432-28778451 | None:intergenic | 30.0% | |
! | GGTCAAAGCAAGATTATTTT+TGG | - | chr8.3:28778997-28779016 | MS.gene017558:intron | 30.0% |
! | TAATTTTCAACTATTGGTCG+CGG | - | chr8.3:28778405-28778424 | MS.gene017558:intron | 30.0% |
! | TTCTTTGGTACAAGTACTTT+TGG | - | chr8.3:28777468-28777487 | MS.gene017558:intron | 30.0% |
!! | CAACTATCATTGATTTCAAG+TGG | - | chr8.3:28779345-28779364 | MS.gene017558:CDS | 30.0% |
!! | CATTTTAGAAGACCAAAACT+AGG | - | chr8.3:28779258-28779277 | MS.gene017558:CDS | 30.0% |
!!! | AATGTAACCTTTTTTGTTGC+TGG | + | chr8.3:28778000-28778019 | None:intergenic | 30.0% |
!!! | CTTGTTTGTTTTGTTTGAAG+TGG | + | chr8.3:28776451-28776470 | None:intergenic | 30.0% |
!!! | TCAATTGTAGTTTTTGGCTA+TGG | - | chr8.3:28778810-28778829 | MS.gene017558:intron | 30.0% |
AAAAGAAGGGAAGAAAACGA+AGG | - | chr8.3:28777801-28777820 | MS.gene017558:CDS | 35.0% | |
AATTACTGTGAATGAATCGG+TGG | - | chr8.3:28776741-28776760 | MS.gene017558:intron | 35.0% | |
ACATCTAGCCGTAGTAAAAA+CGG | + | chr8.3:28779414-28779433 | None:intergenic | 35.0% | |
ACCAAAACTAGGGATTAATG+GGG | - | chr8.3:28779269-28779288 | MS.gene017558:CDS | 35.0% | |
ACTTGGCTTATGATAAGAAG+AGG | - | chr8.3:28776677-28776696 | MS.gene017558:intron | 35.0% | |
AGAAGAAACACTGCTTGATT+CGG | + | chr8.3:28776425-28776444 | None:intergenic | 35.0% | |
AGACCAAAACTAGGGATTAA+TGG | - | chr8.3:28779267-28779286 | MS.gene017558:CDS | 35.0% | |
AGCATGTACTAGAGTAATGT+TGG | - | chr8.3:28777377-28777396 | MS.gene017558:intron | 35.0% | |
ATGAATATTATCTGGCATGC+CGG | + | chr8.3:28778583-28778602 | None:intergenic | 35.0% | |
ATTAGCAAAGTAGAGGTTAC+GGG | + | chr8.3:28778028-28778047 | None:intergenic | 35.0% | |
ATTCTAGCAGATGAACATGA+CGG | - | chr8.3:28777829-28777848 | MS.gene017558:CDS | 35.0% | |
CATTAGCAAAGTAGAGGTTA+CGG | + | chr8.3:28778029-28778048 | None:intergenic | 35.0% | |
GACCAAAACTAGGGATTAAT+GGG | - | chr8.3:28779268-28779287 | MS.gene017558:CDS | 35.0% | |
GATGGTTGAGACAAAATTCA+AGG | + | chr8.3:28778361-28778380 | None:intergenic | 35.0% | |
GCAGTCAATAACTTCTCAAT+GGG | - | chr8.3:28779182-28779201 | MS.gene017558:CDS | 35.0% | |
TGACTCGATGGTTGAAAATT+GGG | - | chr8.3:28776765-28776784 | MS.gene017558:intron | 35.0% | |
TGAGAGTGACACAAAAAGAA+GGG | - | chr8.3:28777788-28777807 | MS.gene017558:CDS | 35.0% | |
TTATCATAAGCCAAGTCTTC+AGG | + | chr8.3:28776673-28776692 | None:intergenic | 35.0% | |
TTCTACAACGATATCTTGGA+AGG | - | chr8.3:28777943-28777962 | MS.gene017558:CDS | 35.0% | |
TTGAGAGTGACACAAAAAGA+AGG | - | chr8.3:28777787-28777806 | MS.gene017558:CDS | 35.0% | |
! | AGGGCAGTATTTTATTGGAA+CGG | - | chr8.3:28778614-28778633 | MS.gene017558:intron | 35.0% |
! | GGAAAAGGGCAGTATTTTAT+TGG | - | chr8.3:28778609-28778628 | MS.gene017558:intron | 35.0% |
! | TCTTATATATACGGGTTGTG+AGG | - | chr8.3:28776702-28776721 | MS.gene017558:intron | 35.0% |
! | TGTCGACTAAATTGAAGAGT+GGG | + | chr8.3:28778128-28778147 | None:intergenic | 35.0% |
! | TTGTCGACTAAATTGAAGAG+TGG | + | chr8.3:28778129-28778148 | None:intergenic | 35.0% |
!! | AAGACTGATTTTACAGGAGT+AGG | - | chr8.3:28778493-28778512 | MS.gene017558:intron | 35.0% |
!! | AAGAGGCGTCTTATATATAC+GGG | - | chr8.3:28776694-28776713 | MS.gene017558:intron | 35.0% |
!! | GAAGAGGCGTCTTATATATA+CGG | - | chr8.3:28776693-28776712 | MS.gene017558:intron | 35.0% |
!!! | GTTTGTTTTGTTTGAAGTGG+CGG | + | chr8.3:28776448-28776467 | None:intergenic | 35.0% |
!!! | TCGCCTATTCTTCCTTTTTT+GGG | + | chr8.3:28778543-28778562 | None:intergenic | 35.0% |
!!! | TTCGCCTATTCTTCCTTTTT+TGG | + | chr8.3:28778544-28778563 | None:intergenic | 35.0% |
AACTGGTGAACTCATAGTTG+CGG | - | chr8.3:28776828-28776847 | MS.gene017558:intron | 40.0% | |
AGAATAGCAGCTAATGCTAC+CGG | + | chr8.3:28776517-28776536 | None:intergenic | 40.0% | |
CAACTCCATTAGCAAAGTAG+AGG | + | chr8.3:28778035-28778054 | None:intergenic | 40.0% | |
CCAAAACTAGGGATTAATGG+GGG | - | chr8.3:28779270-28779289 | MS.gene017558:CDS | 40.0% | |
CGTAACCTCTACTTTGCTAA+TGG | - | chr8.3:28778027-28778046 | MS.gene017558:CDS | 40.0% | |
CTTGGAATACTAGTGAACAG+TGG | - | chr8.3:28778887-28778906 | MS.gene017558:intron | 40.0% | |
GCATGTACACGTTGTATAGA+AGG | - | chr8.3:28777343-28777362 | MS.gene017558:intron | 40.0% | |
GCTGCTATTCTCTACAAACT+CGG | - | chr8.3:28776526-28776545 | MS.gene017558:CDS | 40.0% | |
GGCAGTCAATAACTTCTCAA+TGG | - | chr8.3:28779181-28779200 | MS.gene017558:CDS | 40.0% | |
GGGAGTTATAGTTGTGGATT+TGG | - | chr8.3:28779290-28779309 | MS.gene017558:CDS | 40.0% | |
GGTCCCAAAAAAGGAAGAAT+AGG | - | chr8.3:28778537-28778556 | MS.gene017558:intron | 40.0% | |
GTTATAGTTGTGGATTTGGC+AGG | - | chr8.3:28779294-28779313 | MS.gene017558:CDS | 40.0% | |
GTTGAAAATTGGGTTCACAC+TGG | - | chr8.3:28776775-28776794 | MS.gene017558:intron | 40.0% | |
TAATGGGGGAGTTATAGTTG+TGG | - | chr8.3:28779284-28779303 | MS.gene017558:CDS | 40.0% | |
TACCTACAAGGTCCCAAAAA+AGG | - | chr8.3:28778528-28778547 | MS.gene017558:intron | 40.0% | |
TAGCTCATGAATCTACCATG+AGG | + | chr8.3:28777973-28777992 | None:intergenic | 40.0% | |
TGAATATTATCTGGCATGCC+GGG | + | chr8.3:28778582-28778601 | None:intergenic | 40.0% | |
! | ATATATACGGGTTGTGAGGA+TGG | - | chr8.3:28776706-28776725 | MS.gene017558:intron | 40.0% |
! | CTGACTCGATGGTTGAAAAT+TGG | - | chr8.3:28776764-28776783 | MS.gene017558:intron | 40.0% |
! | GTATTTTATTGGAACGGCCT+TGG | - | chr8.3:28778620-28778639 | MS.gene017558:intron | 40.0% |
!! | TGACTTGGTATGTCCCATAA+TGG | - | chr8.3:28776855-28776874 | MS.gene017558:intron | 40.0% |
!! | TTAACAGATGGGGTTGATGT+AGG | - | chr8.3:28777865-28777884 | MS.gene017558:CDS | 40.0% |
!!! | TTCCTTTTTTGGGACCTTGT+AGG | + | chr8.3:28778533-28778552 | None:intergenic | 40.0% |
AGTTGTGGATTTGGCAGGAA+AGG | - | chr8.3:28779299-28779318 | MS.gene017558:CDS | 45.0% | |
ATCTTGGAAGGTGAACCTCA+TGG | - | chr8.3:28777955-28777974 | MS.gene017558:CDS | 45.0% | |
CAAACTCGGACAGTTTGAAC+TGG | - | chr8.3:28776540-28776559 | MS.gene017558:CDS | 45.0% | |
CCTTCGAAAAACTGCAGCAA+TGG | - | chr8.3:28779227-28779246 | MS.gene017558:CDS | 45.0% | |
GAAAATTGGGTTCACACTGG+TGG | - | chr8.3:28776778-28776797 | MS.gene017558:intron | 45.0% | |
GAATAGCAGCTAATGCTACC+GGG | + | chr8.3:28776516-28776535 | None:intergenic | 45.0% | |
TTCTCCAAAGCAAGTCCAAG+TGG | + | chr8.3:28776808-28776827 | None:intergenic | 45.0% | |
! | AAGACCACTTGGACTTGCTT+TGG | - | chr8.3:28776801-28776820 | MS.gene017558:intron | 45.0% |
! | CCCCCATTAATCCCTAGTTT+TGG | + | chr8.3:28779273-28779292 | None:intergenic | 45.0% |
! | GAATTTTCTCCTGACCTACC+CGG | - | chr8.3:28778561-28778580 | MS.gene017558:intron | 45.0% |
!! | CCATTGCTGCAGTTTTTCGA+AGG | + | chr8.3:28779230-28779249 | None:intergenic | 45.0% |
!! | GCTGCAGTTTTTCGAAGGAA+AGG | + | chr8.3:28779225-28779244 | None:intergenic | 45.0% |
!! | GGACTTGCTTTGGAGAAAAC+TGG | - | chr8.3:28776811-28776830 | MS.gene017558:intron | 45.0% |
!! | TTAAAAAAAAAAAAAACTAT+AGG | - | chr8.3:28778916-28778935 | MS.gene017558:intron | 5.0% |
!!! | AATAATTAAACTTTTTTTTA+TGG | - | chr8.3:28778451-28778470 | MS.gene017558:intron | 5.0% |
!!! | ATAATTAAACTTTTTTTTAT+GGG | - | chr8.3:28778452-28778471 | MS.gene017558:intron | 5.0% |
!!! | TTTTATTTTAAGTTTAATAA+CGG | - | chr8.3:28776938-28776957 | MS.gene017558:intron | 5.0% |
AACTGTCAACCCGCACATGT+GGG | - | chr8.3:28776609-28776628 | MS.gene017558:CDS | 50.0% | |
GGTAGATGGACCTGAAGACT+TGG | - | chr8.3:28776660-28776679 | MS.gene017558:CDS | 50.0% | |
TATTATCTGGCATGCCGGGT+AGG | + | chr8.3:28778578-28778597 | None:intergenic | 50.0% | |
TCGAAACCAACCCACATGTG+CGG | + | chr8.3:28776622-28776641 | None:intergenic | 50.0% | |
! | AACTGGTTCACTTTCCAGCC+AGG | - | chr8.3:28776557-28776576 | MS.gene017558:CDS | 50.0% |
! | ACTGGTTCACTTTCCAGCCA+GGG | - | chr8.3:28776558-28776577 | MS.gene017558:CDS | 50.0% |
! | ATACGGGTTGTGAGGATGGA+TGG | - | chr8.3:28776710-28776729 | MS.gene017558:intron | 50.0% |
!! | CTGCTTGATTCGGACGTTGT+TGG | + | chr8.3:28776415-28776434 | None:intergenic | 50.0% |
!! | GGGGTTGATGTAGGTGAAGA+TGG | - | chr8.3:28777874-28777893 | MS.gene017558:CDS | 50.0% |
ATTACCCTCGCAAACCCCCA+CGG | - | chr8.3:28776582-28776601 | MS.gene017558:CDS | 55.0% | |
CAACTGTCAACCCGCACATG+TGG | - | chr8.3:28776608-28776627 | MS.gene017558:CDS | 55.0% | |
CACACTGGTGGAAGACCACT+TGG | - | chr8.3:28776790-28776809 | MS.gene017558:intron | 55.0% | |
CGAAACCAACCCACATGTGC+GGG | + | chr8.3:28776621-28776640 | None:intergenic | 55.0% | |
GGTTTGCGAGGGTAATTCCC+TGG | + | chr8.3:28776578-28776597 | None:intergenic | 55.0% | |
TGGTTTCGAAGTCGTGGTGG+AGG | - | chr8.3:28776633-28776652 | MS.gene017558:CDS | 55.0% | |
! | CACATGTGCGGGTTGACAGT+TGG | + | chr8.3:28776610-28776629 | None:intergenic | 55.0% |
! | CATAGTTGCGGACGCTGACT+TGG | - | chr8.3:28776840-28776859 | MS.gene017558:intron | 55.0% |
! | GGTTTCGAAGTCGTGGTGGA+GGG | - | chr8.3:28776634-28776653 | MS.gene017558:CDS | 55.0% |
!! | GGTTGGTTTCGAAGTCGTGG+TGG | - | chr8.3:28776630-28776649 | MS.gene017558:CDS | 55.0% |
!! | GTGGGTTGGTTTCGAAGTCG+TGG | - | chr8.3:28776627-28776646 | MS.gene017558:CDS | 55.0% |
!! | TGAATCGGTGGCTGACTCGA+TGG | - | chr8.3:28776753-28776772 | MS.gene017558:intron | 55.0% |
GGGTTGACAGTTGGAGCCGT+GGG | + | chr8.3:28776601-28776620 | None:intergenic | 60.0% | |
GGTTGACAGTTGGAGCCGTG+GGG | + | chr8.3:28776600-28776619 | None:intergenic | 60.0% | |
GTCAACCCGCACATGTGGGT+TGG | - | chr8.3:28776613-28776632 | MS.gene017558:CDS | 60.0% | |
GTTGACAGTTGGAGCCGTGG+GGG | + | chr8.3:28776599-28776618 | None:intergenic | 60.0% | |
TGCGAGGGTAATTCCCTGGC+TGG | + | chr8.3:28776574-28776593 | None:intergenic | 60.0% | |
! | CGAAGTCGTGGTGGAGGGTA+GGG | - | chr8.3:28776639-28776658 | MS.gene017558:CDS | 60.0% |
! | GTGGTGGAGGGTAGGGTAGA+TGG | - | chr8.3:28776646-28776665 | MS.gene017558:CDS | 60.0% |
! | TCGAAGTCGTGGTGGAGGGT+AGG | - | chr8.3:28776638-28776657 | MS.gene017558:CDS | 60.0% |
TCTGGCATGCCGGGTAGGTC+AGG | + | chr8.3:28778573-28778592 | None:intergenic | 65.0% | |
! | CGGGTTGACAGTTGGAGCCG+TGG | + | chr8.3:28776602-28776621 | None:intergenic | 65.0% |
GGAGCCGTGGGGGTTTGCGA+GGG | + | chr8.3:28776589-28776608 | None:intergenic | 70.0% | |
TGGAGCCGTGGGGGTTTGCG+AGG | + | chr8.3:28776590-28776609 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 28776403 | 28779464 | 28776403 | ID=MS.gene017558 |
chr8.3 | mRNA | 28776403 | 28779464 | 28776403 | ID=MS.gene017558.t1;Parent=MS.gene017558 |
chr8.3 | exon | 28779006 | 28779464 | 28779006 | ID=MS.gene017558.t1.exon1;Parent=MS.gene017558.t1 |
chr8.3 | CDS | 28779006 | 28779464 | 28779006 | ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1 |
chr8.3 | exon | 28777767 | 28778086 | 28777767 | ID=MS.gene017558.t1.exon2;Parent=MS.gene017558.t1 |
chr8.3 | CDS | 28777767 | 28778086 | 28777767 | ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1 |
chr8.3 | exon | 28777226 | 28777358 | 28777226 | ID=MS.gene017558.t1.exon3;Parent=MS.gene017558.t1 |
chr8.3 | CDS | 28777226 | 28777358 | 28777226 | ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1 |
chr8.3 | exon | 28776403 | 28776681 | 28776403 | ID=MS.gene017558.t1.exon4;Parent=MS.gene017558.t1 |
chr8.3 | CDS | 28776403 | 28776681 | 28776403 | ID=cds.MS.gene017558.t1;Parent=MS.gene017558.t1 |
Gene Sequence |
Protein sequence |