AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23775


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23775.t1 MTR_8g074210 57.067 375 150 5 21 395 11 374 9.68e-149 426
MS.gene23775.t1 MTR_8g074170 56.533 375 152 5 21 395 11 374 3.01e-147 422
MS.gene23775.t1 MTR_8g074270 56.267 375 153 5 21 395 11 374 2.17e-146 420
MS.gene23775.t1 MTR_8g074320 81.068 206 18 4 56 260 37 222 2.84e-112 328
MS.gene23775.t1 MTR_8g074290 96.364 110 2 1 261 370 45 152 3.12e-72 223
MS.gene23775.t1 MTR_2g042430 33.945 327 176 9 84 396 71 371 1.31e-49 172
MS.gene23775.t1 MTR_2g042370 33.227 313 176 8 84 382 59 352 7.76e-48 167
MS.gene23775.t1 MTR_1g075865 68.224 107 33 1 186 292 7 112 1.13e-47 159
MS.gene23775.t1 MTR_2g042420 32.692 312 178 10 84 382 52 344 3.09e-46 162
MS.gene23775.t1 MTR_4g050190 29.744 390 237 11 26 382 1 386 1.65e-42 153
MS.gene23775.t1 MTR_2g087780 32.817 323 187 8 26 322 4 322 1.09e-39 146
MS.gene23775.t1 MTR_2g099030 35.165 273 144 7 84 333 77 339 1.24e-37 140
MS.gene23775.t1 MTR_7g490330 36.122 263 144 8 86 328 44 302 2.67e-36 135
MS.gene23775.t1 MTR_7g490350 34.130 293 155 10 28 300 2 276 9.14e-35 132
MS.gene23775.t1 MTR_7g090300 32.407 324 177 11 89 382 53 364 2.31e-34 131
MS.gene23775.t1 MTR_7g090310 30.409 342 200 9 79 386 48 385 4.77e-33 128
MS.gene23775.t1 MTR_7g090320 30.723 332 193 9 89 386 58 386 5.20e-33 127
MS.gene23775.t1 MTR_5g091980 33.607 244 139 7 89 313 48 287 3.29e-30 119
MS.gene23775.t1 MTR_4g112670 33.906 233 131 6 87 300 37 265 3.79e-29 116
MS.gene23775.t1 MTR_4g112630 33.898 236 130 7 87 300 36 267 9.91e-27 109
MS.gene23775.t1 MTR_2g058450 32.328 232 135 6 89 301 40 268 2.36e-25 105
MS.gene23775.t1 MTR_4g112650 33.476 233 130 8 89 300 38 266 3.19e-25 105
MS.gene23775.t1 MTR_2g058410 36.364 176 89 7 136 300 1 164 1.60e-21 92.8
MS.gene23775.t1 MTR_0003s0530 35.833 120 75 2 182 300 2 120 3.00e-17 80.1
MS.gene23775.t1 MTR_8g075500 69.565 46 10 1 106 151 173 214 1.91e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23775.t1 AT3G51440 48.370 368 183 4 26 392 5 366 5.65e-121 355
MS.gene23775.t1 AT3G51450 46.196 368 191 4 26 392 5 366 1.25e-113 337
MS.gene23775.t1 AT3G51430 44.959 367 195 4 27 392 6 366 9.68e-112 332
MS.gene23775.t1 AT3G51430 45.232 367 192 5 27 392 6 364 4.43e-111 330
MS.gene23775.t1 AT3G51420 45.652 368 193 4 26 392 5 366 1.06e-110 329
MS.gene23775.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene23775.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene23775.t1 AT5G22020 35.249 261 145 6 79 320 65 320 3.23e-41 150
MS.gene23775.t1 AT1G08470 34.483 261 149 6 79 321 59 315 2.12e-38 142
MS.gene23775.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene23775.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene23775.t1 AT3G59530 33.948 271 146 7 86 333 81 341 1.17e-36 138
MS.gene23775.t1 AT3G57030 29.923 391 213 13 30 382 2 369 5.76e-36 135
MS.gene23775.t1 AT3G57020 29.538 325 201 9 87 388 51 370 1.26e-32 126
MS.gene23775.t1 AT3G57020 29.936 314 200 9 87 388 51 356 1.84e-30 120
MS.gene23775.t1 AT3G57010 28.107 338 199 12 87 393 52 376 1.81e-29 117
MS.gene23775.t1 AT1G74010 36.170 235 127 8 89 305 37 266 2.33e-29 116
MS.gene23775.t1 AT2G41290 30.091 329 185 11 89 381 51 370 5.84e-29 116
MS.gene23775.t1 AT1G74020 30.798 263 148 8 89 321 38 296 4.58e-27 110
MS.gene23775.t1 AT2G41300 28.824 340 214 11 64 386 64 392 4.66e-26 108
MS.gene23775.t1 AT1G74000 29.876 241 147 7 83 305 34 270 3.11e-24 102

Find 90 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACTCGATGGTTGAAAAT+TGG 0.257497 8.4:+30427585 MS.gene23775:CDS
CCAACATAATGAATATTATC+TGG 0.284932 8.4:-30429184 None:intergenic
AGACCAAAACTAGGGATTAA+TGG 0.305795 8.4:+30429864 MS.gene23775:CDS
GACCAAAACTAGGGATTAAT+GGG 0.325402 8.4:+30429865 MS.gene23775:CDS
GAAGAGGCGTCTTATATATA+CGG 0.329151 8.4:+30427514 MS.gene23775:CDS
TTATCATAAGCCAAGTCTTC+AGG 0.342505 8.4:-30427491 None:intergenic
GGGAGTTATAGTTGTGGATT+TGG 0.359842 8.4:+30429887 MS.gene23775:CDS
CGTAACCTCTACTTTGCTAA+TGG 0.369732 8.4:+30428619 MS.gene23775:CDS
AATATTCATTATGTTGGAAA+AGG 0.377022 8.4:+30429190 MS.gene23775:CDS
TGATTTCTACAACGATATCT+TGG 0.381372 8.4:+30428531 MS.gene23775:CDS
CTTATTAATCATAGCTTTCC+CGG 0.384597 8.4:+30427316 MS.gene23775:CDS
AAGACCACTTGGACTTGCTT+TGG 0.385209 8.4:+30427622 MS.gene23775:CDS
AGAAGAAACACTGCTTGATT+CGG 0.405140 8.4:-30427243 None:intergenic
CTGCTTGATTCGGACGTTGT+TGG 0.405730 8.4:-30427233 None:intergenic
GGACTTGCTTTGGAGAAAAC+TGG 0.410861 8.4:+30427632 MS.gene23775:CDS
GGGTTGACAGTTGGAGCCGT+GGG 0.426206 8.4:-30427419 None:intergenic
TGACTCGATGGTTGAAAATT+GGG 0.426472 8.4:+30427586 MS.gene23775:CDS
GTGGTGGAGGGTAGGGTAGA+TGG 0.431819 8.4:+30427467 MS.gene23775:CDS
TCTGGCATGCCGGGTAGGTC+AGG 0.444845 8.4:-30429166 None:intergenic
AACTGGTTCACTTTCCAGCC+AGG 0.445181 8.4:+30427378 MS.gene23775:CDS
CCAGATAATATTCATTATGT+TGG 0.449275 8.4:+30429184 MS.gene23775:CDS
GGCAGTCAATAACTTCTCAA+TGG 0.453895 8.4:+30429778 MS.gene23775:intron
TGGTTCCGAAGTCGTGGTGG+AGG 0.455201 8.4:+30427454 MS.gene23775:CDS
CACTTGAAATCAATGATAGT+TGG 0.463840 8.4:-30429941 None:intergenic
CATAGTTGCGGACGCTGACT+TGG 0.467767 8.4:+30427661 MS.gene23775:CDS
GTTATAGTTGTGGATTTGGC+AGG 0.469059 8.4:+30429891 MS.gene23775:CDS
ATGAATATTATCTGGCATGC+CGG 0.469077 8.4:-30429176 None:intergenic
GCAGTCAATAACTTCTCAAT+GGG 0.474333 8.4:+30429779 MS.gene23775:intron
ATTAGCAAAGTAGAGGTTAC+GGG 0.474734 8.4:-30428617 None:intergenic
CCGAAGTCGTGGTGGAGGGT+AGG 0.476263 8.4:+30427459 MS.gene23775:CDS
CACACTGGTGGAAGACCACT+TGG 0.484706 8.4:+30427611 MS.gene23775:CDS
ACGAATTACTGTGAATGAAT+CGG 0.488343 8.4:+30427559 MS.gene23775:CDS
CGGGTTGACAGTTGGAGCCG+TGG 0.489834 8.4:-30427420 None:intergenic
CATTAGCAAAGTAGAGGTTA+CGG 0.491944 8.4:-30428618 None:intergenic
TTAAAATTCAAGTTAACAGA+TGG 0.493578 8.4:+30428445 MS.gene23775:CDS
AGTTGTGGATTTGGCAGGAA+AGG 0.494082 8.4:+30429896 MS.gene23775:CDS
CGGAACCAACCCACATGTGC+GGG 0.494965 8.4:-30427439 None:intergenic
CGAAGTCGTGGTGGAGGGTA+GGG 0.495803 8.4:+30427460 MS.gene23775:CDS
TTGACTGTTGTTCATGCTGA+GGG 0.500774 8.4:-30430050 None:intergenic
CAAACTCGGACAGTTTGAAC+TGG 0.503297 8.4:+30427361 MS.gene23775:CDS
TGAATATTATCTGGCATGCC+GGG 0.508137 8.4:-30429175 None:intergenic
GGTTTGCGAGGGTAACTCCC+TGG 0.511440 8.4:-30427396 None:intergenic
GTTGATAATTATATATATTG+TGG 0.512752 8.4:+30429972 MS.gene23775:CDS
ATACGGGTTGTGAGGATGGA+TGG 0.521741 8.4:+30427531 MS.gene23775:CDS
TAAAATTCAAGTTAACAGAT+GGG 0.522474 8.4:+30428446 MS.gene23775:CDS
ATATTCATTATGTTGGAAAA+GGG 0.525563 8.4:+30429191 MS.gene23775:CDS
GGGGTTGATGTAGGTGAAGA+TGG 0.525866 8.4:+30428466 MS.gene23775:CDS
AGAATAGCAGCTAATGCTAC+CGG 0.526322 8.4:-30427335 None:intergenic
CAACTATCATTGATTTCAAG+TGG 0.527805 8.4:+30429942 MS.gene23775:CDS
CAACTGTCAACCCGCACATG+TGG 0.533793 8.4:+30427429 MS.gene23775:CDS
ATATATACGGGTTGTGAGGA+TGG 0.540191 8.4:+30427527 MS.gene23775:CDS
GTTGACTGTTGTTCATGCTG+AGG 0.542452 8.4:-30430051 None:intergenic
CACATGTGCGGGTTGACAGT+TGG 0.545258 8.4:-30427428 None:intergenic
GGTAGATGGACCTGAAGACT+TGG 0.547168 8.4:+30427481 MS.gene23775:CDS
TGCGAGGGTAACTCCCTGGC+TGG 0.549549 8.4:-30427392 None:intergenic
TTAACAGATGGGGTTGATGT+AGG 0.553836 8.4:+30428457 MS.gene23775:CDS
AAGAGGCGTCTTATATATAC+GGG 0.565621 8.4:+30427515 MS.gene23775:CDS
CCTACCCTCCACCACGACTT+CGG 0.566937 8.4:-30427459 None:intergenic
AAAATTCAAGTTAACAGATG+GGG 0.568583 8.4:+30428447 MS.gene23775:CDS
TATTATCTGGCATGCCGGGT+AGG 0.575920 8.4:-30429171 None:intergenic
TTCTACAACGATATCTTGGA+AGG 0.580448 8.4:+30428535 MS.gene23775:CDS
GGTTGACAGTTGGAGCCGTG+GGG 0.584683 8.4:-30427418 None:intergenic
AACTATCATTGATTTCAAGT+GGG 0.585821 8.4:+30429943 MS.gene23775:CDS
GTTGACAGTTGGAGCCGTGG+GGG 0.589619 8.4:-30427417 None:intergenic
GAAAATTGGGTTCACACTGG+TGG 0.592486 8.4:+30427599 MS.gene23775:CDS
GTTCATGCTGAGGGAAGTGC+AGG 0.600630 8.4:-30430041 None:intergenic
TGCAGAAAATATTACCTACA+AGG 0.602205 8.4:+30429112 MS.gene23775:CDS
ACTGGTTCACTTTCCAGCCA+GGG 0.604623 8.4:+30427379 MS.gene23775:CDS
AACTGTCAACCCGCACATGT+GGG 0.607719 8.4:+30427430 MS.gene23775:CDS
GTCAACCCGCACATGTGGGT+TGG 0.608093 8.4:+30427434 MS.gene23775:CDS
GAATAGCAGCTAATGCTACC+GGG 0.612763 8.4:-30427334 None:intergenic
TCGGAACCAACCCACATGTG+CGG 0.613661 8.4:-30427440 None:intergenic
TTCTCCAAAGCAAGTCCAAG+TGG 0.616513 8.4:-30427626 None:intergenic
TCTTATATATACGGGTTGTG+AGG 0.617398 8.4:+30427523 MS.gene23775:CDS
GGTTCCGAAGTCGTGGTGGA+GGG 0.619218 8.4:+30427455 MS.gene23775:CDS
TGAATCGGTGGCTGACTCGA+TGG 0.624849 8.4:+30427574 MS.gene23775:CDS
CAACTCCATTAGCAAAGTAG+AGG 0.625379 8.4:-30428624 None:intergenic
GTGGGTTGGTTCCGAAGTCG+TGG 0.630335 8.4:+30427448 MS.gene23775:CDS
ACTTGGCTTATGATAAGAAG+AGG 0.631927 8.4:+30427498 MS.gene23775:CDS
GGTTGGTTCCGAAGTCGTGG+TGG 0.639619 8.4:+30427451 MS.gene23775:CDS
GCTGCTATTCTCTACAAACT+CGG 0.641756 8.4:+30427347 MS.gene23775:CDS
GTTGAAAATTGGGTTCACAC+TGG 0.650996 8.4:+30427596 MS.gene23775:CDS
AACTGGTGAACTCATAGTTG+CGG 0.661307 8.4:+30427649 MS.gene23775:CDS
ATCTTGGAAGGTGAACCTCA+TGG 0.664644 8.4:+30428547 MS.gene23775:CDS
ATTCTAGCAGATGAACATGA+CGG 0.671427 8.4:+30428421 MS.gene23775:CDS
ACCAAAACTAGGGATTAATG+GGG 0.671442 8.4:+30429866 MS.gene23775:CDS
AAAAGAAGGGAAGAAAACGA+AGG 0.706726 8.4:+30428393 MS.gene23775:CDS
AATTACTGTGAATGAATCGG+TGG 0.717583 8.4:+30427562 MS.gene23775:CDS
TAGCTCATGAATCTACCATG+AGG 0.726341 8.4:-30428562 None:intergenic
CCAAAACTAGGGATTAATGG+GGG 0.727146 8.4:+30429867 MS.gene23775:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTAATTATTTAAACA+AGG - chr8.4:30429040-30429059 None:intergenic 10.0%
!! AAGTTTAATTATTTAAACAA+GGG - chr8.4:30429039-30429058 None:intergenic 10.0%
!! AATAATTGTAATAATGATAT+AGG + chr8.4:30428351-30428370 MS.gene23775:intron 10.0%
!! AATCTCATAAATTATTTAAT+TGG + chr8.4:30428299-30428318 MS.gene23775:intron 10.0%
!! ATAATTGTAATAATGATATA+GGG + chr8.4:30428352-30428371 MS.gene23775:intron 10.0%
!!! AGATTATTTTTACAAAAAAA+TGG + chr8.4:30427720-30427739 MS.gene23775:intron 10.0%
!!! ATAATTTATGAGATTTATTT+TGG - chr8.4:30428294-30428313 None:intergenic 10.0%
!!! TAAAAAATTTGAACTTTTTA+AGG + chr8.4:30429369-30429388 MS.gene23775:intron 10.0%
!!! TTATCAAATTTTAAAATAAG+AGG - chr8.4:30427823-30427842 None:intergenic 10.0%
!! AATACTAACAAGTATTATAA+TGG - chr8.4:30428889-30428908 None:intergenic 15.0%
!! CGTAAAATAATAAAAATAGA+GGG - chr8.4:30427792-30427811 None:intergenic 15.0%
!! TATTCATTTGAAAAATTCTT+TGG + chr8.4:30428045-30428064 MS.gene23775:intron 15.0%
!! TCGTAAAATAATAAAAATAG+AGG - chr8.4:30427793-30427812 None:intergenic 15.0%
!! TTCTTTAACTAATATCTTAA+GGG - chr8.4:30428759-30428778 None:intergenic 15.0%
!! TTTCTTTAACTAATATCTTA+AGG - chr8.4:30428760-30428779 None:intergenic 15.0%
!!! GTTGATAATTATATATATTG+TGG + chr8.4:30429972-30429991 MS.gene23775:CDS 15.0%
!!! TTTGAATAATTTTCAACTAT+TGG + chr8.4:30428994-30429013 MS.gene23775:intron 15.0%
!!! TTTTAACTCTAAATATTTGA+TGG - chr8.4:30427855-30427874 None:intergenic 15.0%
!! AATATTCATTATGTTGGAAA+AGG + chr8.4:30429190-30429209 MS.gene23775:CDS 20.0%
!! ATATTCATTATGTTGGAAAA+GGG + chr8.4:30429191-30429210 MS.gene23775:CDS 20.0%
!! TATTTACATAGATCCATTAT+GGG - chr8.4:30427692-30427711 None:intergenic 20.0%
!!! AGGATTTTGTAGAATTTATA+AGG - chr8.4:30428936-30428955 None:intergenic 20.0%
!!! TAAAATTCAAGTTAACAGAT+GGG + chr8.4:30428446-30428465 MS.gene23775:CDS 20.0%
!!! TTAAAATTCAAGTTAACAGA+TGG + chr8.4:30428445-30428464 MS.gene23775:CDS 20.0%
!!! TTATTATTACGAAGTTTTCA+CGG + chr8.4:30429626-30429645 MS.gene23775:intron 20.0%
!!! TTTAAGTTTAATAACGGTTT+TGG + chr8.4:30427765-30427784 MS.gene23775:intron 20.0%
! AATAAATCCCTTATATACTC+TGG + chr8.4:30429703-30429722 MS.gene23775:intron 25.0%
! AATTAAGAATCATCTTACCA+AGG - chr8.4:30429236-30429255 None:intergenic 25.0%
! ACTATAAACCAGAGTATATA+AGG - chr8.4:30429714-30429733 None:intergenic 25.0%
! CAATAACTGATTAATCAAAG+TGG + chr8.4:30429346-30429365 MS.gene23775:intron 25.0%
! CACTTTGATTAATCAGTTAT+TGG - chr8.4:30429348-30429367 None:intergenic 25.0%
! CCAACATAATGAATATTATC+TGG - chr8.4:30429187-30429206 None:intergenic 25.0%
! CCAGATAATATTCATTATGT+TGG + chr8.4:30429184-30429203 MS.gene23775:CDS 25.0%
! CTATAAACCAGAGTATATAA+GGG - chr8.4:30429713-30429732 None:intergenic 25.0%
! CTATTTACATAGATCCATTA+TGG - chr8.4:30427693-30427712 None:intergenic 25.0%
! CTTTGACCAAAATTATTAAG+GGG - chr8.4:30429582-30429601 None:intergenic 25.0%
! GCTTTGACCAAAATTATTAA+GGG - chr8.4:30429583-30429602 None:intergenic 25.0%
! TAGTAAAAACGGATAATAAG+AGG - chr8.4:30430000-30430019 None:intergenic 25.0%
! TGCTTTGACCAAAATTATTA+AGG - chr8.4:30429584-30429603 None:intergenic 25.0%
!! AAAATTCAAGTTAACAGATG+GGG + chr8.4:30428447-30428466 MS.gene23775:CDS 25.0%
!! AAGAGTTCAATTGTAGTTTT+TGG + chr8.4:30429400-30429419 MS.gene23775:intron 25.0%
!! TAGACAACAAATTTTTGATC+AGG - chr8.4:30428658-30428677 None:intergenic 25.0%
!! TATAATTTTTGTGCTACACT+TGG + chr8.4:30429465-30429484 MS.gene23775:intron 25.0%
!! TTTTAGCCCCTTAATAATTT+TGG + chr8.4:30429573-30429592 MS.gene23775:intron 25.0%
!!! AACTATCATTGATTTCAAGT+GGG + chr8.4:30429943-30429962 MS.gene23775:CDS 25.0%
!!! ATGCATGTTTTGTGTTTTAA+TGG + chr8.4:30429757-30429776 MS.gene23775:intron 25.0%
!!! ATTTTAGAAGACCAAAACTA+GGG + chr8.4:30429856-30429875 MS.gene23775:CDS 25.0%
!!! CTTATTATCCGTTTTTACTA+CGG + chr8.4:30430000-30430019 MS.gene23775:CDS 25.0%
!!! GTCAAAGCAAGATTATTTTT+GGG + chr8.4:30429595-30429614 MS.gene23775:intron 25.0%
!!! TTATGAAAGACTGATTTTAC+AGG + chr8.4:30429083-30429102 MS.gene23775:intron 25.0%
ACACTAACAATGACAATTGA+TGG - chr8.4:30428974-30428993 None:intergenic 30.0%
ACGAATTACTGTGAATGAAT+CGG + chr8.4:30427559-30427578 MS.gene23775:CDS 30.0%
CACTTGAAATCAATGATAGT+TGG - chr8.4:30429944-30429963 None:intergenic 30.0%
CTATAATCCAGCAACAAAAA+AGG + chr8.4:30428582-30428601 MS.gene23775:CDS 30.0%
CTTATTAATCATAGCTTTCC+CGG + chr8.4:30427316-30427335 MS.gene23775:CDS 30.0%
GGAGTTAACTTATTTGATCA+TGG + chr8.4:30428320-30428339 MS.gene23775:intron 30.0%
TGATTTCTACAACGATATCT+TGG + chr8.4:30428531-30428550 MS.gene23775:CDS 30.0%
TGCAGAAAATATTACCTACA+AGG + chr8.4:30429112-30429131 MS.gene23775:CDS 30.0%
TGGCTATGGAAAAATTTGAT+TGG + chr8.4:30429420-30429439 MS.gene23775:intron 30.0%
TTAAACAAGGGCAAATTCTA+TGG - chr8.4:30429027-30429046 None:intergenic 30.0%
! GGTCAAAGCAAGATTATTTT+TGG + chr8.4:30429594-30429613 MS.gene23775:intron 30.0%
! TAATTTTCAACTATTGGTCC+CGG + chr8.4:30429000-30429019 MS.gene23775:intron 30.0%
! TGTCGACTAAATTAAAGAGT+GGG - chr8.4:30428720-30428739 None:intergenic 30.0%
! TTCTTTGGTACAAGTACTTT+TGG + chr8.4:30428060-30428079 MS.gene23775:intron 30.0%
! TTGTCGACTAAATTAAAGAG+TGG - chr8.4:30428721-30428740 None:intergenic 30.0%
!! CAACTATCATTGATTTCAAG+TGG + chr8.4:30429942-30429961 MS.gene23775:CDS 30.0%
!! CATTTTAGAAGACCAAAACT+AGG + chr8.4:30429855-30429874 MS.gene23775:CDS 30.0%
!!! AATGTAACCTTTTTTGTTGC+TGG - chr8.4:30428592-30428611 None:intergenic 30.0%
!!! CTTGTTTGTTTTGTTTGAAG+TGG - chr8.4:30427272-30427291 None:intergenic 30.0%
!!! TCAATTGTAGTTTTTGGCTA+TGG + chr8.4:30429406-30429425 MS.gene23775:intron 30.0%
AAAAGAAGGGAAGAAAACGA+AGG + chr8.4:30428393-30428412 MS.gene23775:CDS 35.0%
AACCGAACATAAATGCAATG+TGG - chr8.4:30429555-30429574 None:intergenic 35.0%
AATTACTGTGAATGAATCGG+TGG + chr8.4:30427562-30427581 MS.gene23775:CDS 35.0%
ACATCTAGCCGTAGTAAAAA+CGG - chr8.4:30430011-30430030 None:intergenic 35.0%
ACCAAAACTAGGGATTAATG+GGG + chr8.4:30429866-30429885 MS.gene23775:CDS 35.0%
ACTTGGCTTATGATAAGAAG+AGG + chr8.4:30427498-30427517 MS.gene23775:CDS 35.0%
AGAAGAAACACTGCTTGATT+CGG - chr8.4:30427246-30427265 None:intergenic 35.0%
AGACCAAAACTAGGGATTAA+TGG + chr8.4:30429864-30429883 MS.gene23775:CDS 35.0%
AGCATGTACTAGAGTAATGT+TGG + chr8.4:30427969-30427988 MS.gene23775:intron 35.0%
ATGAATATTATCTGGCATGC+CGG - chr8.4:30429179-30429198 None:intergenic 35.0%
ATTAGCAAAGTAGAGGTTAC+GGG - chr8.4:30428620-30428639 None:intergenic 35.0%
ATTCTAGCAGATGAACATGA+CGG + chr8.4:30428421-30428440 MS.gene23775:CDS 35.0%
CATTAGCAAAGTAGAGGTTA+CGG - chr8.4:30428621-30428640 None:intergenic 35.0%
GACCAAAACTAGGGATTAAT+GGG + chr8.4:30429865-30429884 MS.gene23775:CDS 35.0%
GATGGTTGAGACAAAATTCA+AGG - chr8.4:30428956-30428975 None:intergenic 35.0%
GCAGTCAATAACTTCTCAAT+GGG + chr8.4:30429779-30429798 MS.gene23775:intron 35.0%
GCATGTATACGTTGTATAGA+AGG + chr8.4:30427935-30427954 MS.gene23775:intron 35.0%
TGACTCGATGGTTGAAAATT+GGG + chr8.4:30427586-30427605 MS.gene23775:CDS 35.0%
TGAGAGTGACACAAAAAGAA+GGG + chr8.4:30428380-30428399 MS.gene23775:CDS 35.0%
TGCCACATTGCATTTATGTT+CGG + chr8.4:30429550-30429569 MS.gene23775:intron 35.0%
TTATCATAAGCCAAGTCTTC+AGG - chr8.4:30427494-30427513 None:intergenic 35.0%
TTCTACAACGATATCTTGGA+AGG + chr8.4:30428535-30428554 MS.gene23775:CDS 35.0%
TTGAGAGTGACACAAAAAGA+AGG + chr8.4:30428379-30428398 MS.gene23775:CDS 35.0%
! AGGGCAGTATTTTATTGGAA+CGG + chr8.4:30429210-30429229 MS.gene23775:CDS 35.0%
! GGAAAAGGGCAGTATTTTAT+TGG + chr8.4:30429205-30429224 MS.gene23775:CDS 35.0%
! TCTTATATATACGGGTTGTG+AGG + chr8.4:30427523-30427542 MS.gene23775:CDS 35.0%
!! AAGACTGATTTTACAGGAGT+AGG + chr8.4:30429089-30429108 MS.gene23775:intron 35.0%
!! AAGAGGCGTCTTATATATAC+GGG + chr8.4:30427515-30427534 MS.gene23775:CDS 35.0%
!! GAAGAGGCGTCTTATATATA+CGG + chr8.4:30427514-30427533 MS.gene23775:CDS 35.0%
!!! GTTTGTTTTGTTTGAAGTGG+CGG - chr8.4:30427269-30427288 None:intergenic 35.0%
!!! TCGCCTATTCTTCCTTTTTT+GGG - chr8.4:30429139-30429158 None:intergenic 35.0%
!!! TTCGCCTATTCTTCCTTTTT+TGG - chr8.4:30429140-30429159 None:intergenic 35.0%
AACTGGTGAACTCATAGTTG+CGG + chr8.4:30427649-30427668 MS.gene23775:CDS 40.0%
AGAATAGCAGCTAATGCTAC+CGG - chr8.4:30427338-30427357 None:intergenic 40.0%
CAACTCCATTAGCAAAGTAG+AGG - chr8.4:30428627-30428646 None:intergenic 40.0%
CCAAAACTAGGGATTAATGG+GGG + chr8.4:30429867-30429886 MS.gene23775:CDS 40.0%
CGTAACCTCTACTTTGCTAA+TGG + chr8.4:30428619-30428638 MS.gene23775:CDS 40.0%
CTTGGAATACTAGTGAACAG+TGG + chr8.4:30429483-30429502 MS.gene23775:intron 40.0%
GCTGCTATTCTCTACAAACT+CGG + chr8.4:30427347-30427366 MS.gene23775:CDS 40.0%
GGCAGTCAATAACTTCTCAA+TGG + chr8.4:30429778-30429797 MS.gene23775:intron 40.0%
GGGAGTTATAGTTGTGGATT+TGG + chr8.4:30429887-30429906 MS.gene23775:CDS 40.0%
GGTCCCAAAAAAGGAAGAAT+AGG + chr8.4:30429133-30429152 MS.gene23775:CDS 40.0%
GTTATAGTTGTGGATTTGGC+AGG + chr8.4:30429891-30429910 MS.gene23775:CDS 40.0%
GTTGAAAATTGGGTTCACAC+TGG + chr8.4:30427596-30427615 MS.gene23775:CDS 40.0%
TAATGGGGGAGTTATAGTTG+TGG + chr8.4:30429881-30429900 MS.gene23775:CDS 40.0%
TACCTACAAGGTCCCAAAAA+AGG + chr8.4:30429124-30429143 MS.gene23775:CDS 40.0%
TAGCTCATGAATCTACCATG+AGG - chr8.4:30428565-30428584 None:intergenic 40.0%
TGAATATTATCTGGCATGCC+GGG - chr8.4:30429178-30429197 None:intergenic 40.0%
! ATATATACGGGTTGTGAGGA+TGG + chr8.4:30427527-30427546 MS.gene23775:CDS 40.0%
! CTGACTCGATGGTTGAAAAT+TGG + chr8.4:30427585-30427604 MS.gene23775:CDS 40.0%
! GTATTTTATTGGAACGGCCT+TGG + chr8.4:30429216-30429235 MS.gene23775:CDS 40.0%
!! TGACTTGGTATGTCCCATAA+TGG + chr8.4:30427676-30427695 MS.gene23775:intron 40.0%
!! TTAACAGATGGGGTTGATGT+AGG + chr8.4:30428457-30428476 MS.gene23775:CDS 40.0%
!!! TTCCTTTTTTGGGACCTTGT+AGG - chr8.4:30429129-30429148 None:intergenic 40.0%
AAGGGCAAATTCTATGGTCC+GGG - chr8.4:30429021-30429040 None:intergenic 45.0%
AGTTGTGGATTTGGCAGGAA+AGG + chr8.4:30429896-30429915 MS.gene23775:CDS 45.0%
ATCTTGGAAGGTGAACCTCA+TGG + chr8.4:30428547-30428566 MS.gene23775:CDS 45.0%
CAAACTCGGACAGTTTGAAC+TGG + chr8.4:30427361-30427380 MS.gene23775:CDS 45.0%
CAAGGGCAAATTCTATGGTC+CGG - chr8.4:30429022-30429041 None:intergenic 45.0%
CCTTCGAAAAACTGCAGCAA+TGG + chr8.4:30429824-30429843 MS.gene23775:CDS 45.0%
GAAAATTGGGTTCACACTGG+TGG + chr8.4:30427599-30427618 MS.gene23775:CDS 45.0%
GAATAGCAGCTAATGCTACC+GGG - chr8.4:30427337-30427356 None:intergenic 45.0%
TTCTCCAAAGCAAGTCCAAG+TGG - chr8.4:30427629-30427648 None:intergenic 45.0%
! AAGACCACTTGGACTTGCTT+TGG + chr8.4:30427622-30427641 MS.gene23775:CDS 45.0%
! CCCCCATTAATCCCTAGTTT+TGG - chr8.4:30429870-30429889 None:intergenic 45.0%
! GAATTTTCTCCTGACCTACC+CGG + chr8.4:30429157-30429176 MS.gene23775:CDS 45.0%
!! CCATTGCTGCAGTTTTTCGA+AGG - chr8.4:30429827-30429846 None:intergenic 45.0%
!! GCTGCAGTTTTTCGAAGGAA+AGG - chr8.4:30429822-30429841 None:intergenic 45.0%
!! GGACTTGCTTTGGAGAAAAC+TGG + chr8.4:30427632-30427651 MS.gene23775:CDS 45.0%
!! TAAAAAAAAAAAAAAACTAT+AGG + chr8.4:30429513-30429532 MS.gene23775:intron 5.0%
!!! ATAATTAAACTTTTTTTTTA+TGG + chr8.4:30429047-30429066 MS.gene23775:intron 5.0%
!!! TAATTAAACTTTTTTTTTAT+GGG + chr8.4:30429048-30429067 MS.gene23775:intron 5.0%
!!! TTTTATTTTAAGTTTAATAA+CGG + chr8.4:30427759-30427778 MS.gene23775:intron 5.0%
AACTGTCAACCCGCACATGT+GGG + chr8.4:30427430-30427449 MS.gene23775:CDS 50.0%
GGTAGATGGACCTGAAGACT+TGG + chr8.4:30427481-30427500 MS.gene23775:CDS 50.0%
TATTATCTGGCATGCCGGGT+AGG - chr8.4:30429174-30429193 None:intergenic 50.0%
! AACTGGTTCACTTTCCAGCC+AGG + chr8.4:30427378-30427397 MS.gene23775:CDS 50.0%
! ACTGGTTCACTTTCCAGCCA+GGG + chr8.4:30427379-30427398 MS.gene23775:CDS 50.0%
! ATACGGGTTGTGAGGATGGA+TGG + chr8.4:30427531-30427550 MS.gene23775:CDS 50.0%
!! CTGCTTGATTCGGACGTTGT+TGG - chr8.4:30427236-30427255 None:intergenic 50.0%
!! GGGGTTGATGTAGGTGAAGA+TGG + chr8.4:30428466-30428485 MS.gene23775:CDS 50.0%
CAACTGTCAACCCGCACATG+TGG + chr8.4:30427429-30427448 MS.gene23775:CDS 55.0%
CACACTGGTGGAAGACCACT+TGG + chr8.4:30427611-30427630 MS.gene23775:CDS 55.0%
TCGGAACCAACCCACATGTG+CGG - chr8.4:30427443-30427462 None:intergenic 55.0%
! CACATGTGCGGGTTGACAGT+TGG - chr8.4:30427431-30427450 None:intergenic 55.0%
! CATAGTTGCGGACGCTGACT+TGG + chr8.4:30427661-30427680 MS.gene23775:CDS 55.0%
!! TGAATCGGTGGCTGACTCGA+TGG + chr8.4:30427574-30427593 MS.gene23775:CDS 55.0%
CCTACCCTCCACCACGACTT+CGG - chr8.4:30427462-30427481 None:intergenic 60.0%
CGGAACCAACCCACATGTGC+GGG - chr8.4:30427442-30427461 None:intergenic 60.0%
GGGTTGACAGTTGGAGCCGT+GGG - chr8.4:30427422-30427441 None:intergenic 60.0%
GGTTGACAGTTGGAGCCGTG+GGG - chr8.4:30427421-30427440 None:intergenic 60.0%
GGTTTGCGAGGGTAACTCCC+TGG - chr8.4:30427399-30427418 None:intergenic 60.0%
GTCAACCCGCACATGTGGGT+TGG + chr8.4:30427434-30427453 MS.gene23775:CDS 60.0%
GTTACCCTCGCAAACCCCCA+CGG + chr8.4:30427403-30427422 MS.gene23775:CDS 60.0%
GTTGACAGTTGGAGCCGTGG+GGG - chr8.4:30427420-30427439 None:intergenic 60.0%
TGGTTCCGAAGTCGTGGTGG+AGG + chr8.4:30427454-30427473 MS.gene23775:CDS 60.0%
! CGAAGTCGTGGTGGAGGGTA+GGG + chr8.4:30427460-30427479 MS.gene23775:CDS 60.0%
! GGTTCCGAAGTCGTGGTGGA+GGG + chr8.4:30427455-30427474 MS.gene23775:CDS 60.0%
! GGTTGGTTCCGAAGTCGTGG+TGG + chr8.4:30427451-30427470 MS.gene23775:CDS 60.0%
! GTGGTGGAGGGTAGGGTAGA+TGG + chr8.4:30427467-30427486 MS.gene23775:CDS 60.0%
!! GTGGGTTGGTTCCGAAGTCG+TGG + chr8.4:30427448-30427467 MS.gene23775:CDS 60.0%
TCTGGCATGCCGGGTAGGTC+AGG - chr8.4:30429169-30429188 None:intergenic 65.0%
TGCGAGGGTAACTCCCTGGC+TGG - chr8.4:30427395-30427414 None:intergenic 65.0%
! CCGAAGTCGTGGTGGAGGGT+AGG + chr8.4:30427459-30427478 MS.gene23775:CDS 65.0%
! CGGGTTGACAGTTGGAGCCG+TGG - chr8.4:30427423-30427442 None:intergenic 65.0%
GGAGCCGTGGGGGTTTGCGA+GGG - chr8.4:30427410-30427429 None:intergenic 70.0%
TGGAGCCGTGGGGGTTTGCG+AGG - chr8.4:30427411-30427430 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 30427224 30430061 30427224 ID=MS.gene23775
chr8.4 mRNA 30427224 30430061 30427224 ID=MS.gene23775.t1;Parent=MS.gene23775
chr8.4 exon 30427224 30427682 30427224 ID=MS.gene23775.t1.exon1;Parent=MS.gene23775.t1
chr8.4 CDS 30427224 30427682 30427224 ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1
chr8.4 exon 30428373 30428692 30428373 ID=MS.gene23775.t1.exon2;Parent=MS.gene23775.t1
chr8.4 CDS 30428373 30428692 30428373 ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1
chr8.4 exon 30429105 30429237 30429105 ID=MS.gene23775.t1.exon3;Parent=MS.gene23775.t1
chr8.4 CDS 30429105 30429237 30429105 ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1
chr8.4 exon 30429783 30430061 30429783 ID=MS.gene23775.t1.exon4;Parent=MS.gene23775.t1
chr8.4 CDS 30429783 30430061 30429783 ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1
Gene Sequence

>MS.gene23775

ATGGCAAAACCAACAACGTCCGAATCAAGCAGTGTTTCTTCTCCGCCACTTCAAACAAAACAAACAAGATCATGTCTTTCAACAACAACAATCTTATTAATCATAGCTTTCCCGGTAGCATTAGCTGCTATTCTCTACAAACTCGGACAGTTTGAACTGGTTCACTTTCCAGCCAGGGAGTTACCCTCGCAAACCCCCACGGCTCCAACTGTCAACCCGCACATGTGGGTTGGTTCCGAAGTCGTGGTGGAGGGTAGGGTAGATGGACCTGAAGACTTGGCTTATGATAAGAAGAGGCGTCTTATATATACGGGTTGTGAGGATGGATGGATCAAACGAATTACTGTGAATGAATCGGTGGCTGACTCGATGGTTGAAAATTGGGTTCACACTGGTGGAAGACCACTTGGACTTGCTTTGGAGAAAACTGGTGAACTCATAGTTGCGGACGCTGACTTGGTATGTCCCATAATGGATCTATGTAAATAGAGTCTTTAGATTATTTTTACAAAAAAATGGATTGAAAGAGAAAATGTTTTATTTTAAGTTTAATAACGGTTTTGGTCCCTCTATTTTTATTATTTTACGAAATTGATCCTCTTATTTTAAAATTTGATAATTTTAATCTCCATCAAATATTTAGAGTTAAAACAAGTTTAAATTTTTTATAGAATTTCTATTTTTTATCTTAGTTATTGTACGCACTTTTTAGCATGTATACGTTGTATAGAAGGTGAATATGCATAGCATGTACTAGAGTAATGTTGGTATGTACTGTACATGTCATTTAATCATTGAATGTCTTGTAAAATTTTTATATCTATTCATTTGAAAAATTCTTTGGTACAAGTACTTTTGGTACAACTAAAAATCTTTTACACTATCTCAAAATCGCAATGAAAATTTTAATCATTATAATTTTACATTGTCAATAAATTTTAAACATTAGATTATTAAAAATGTTAGATTATATGTTTCAAAAAAAATGTTAGATTATATTGAAAATACGTTTGAGTTACGTCTATGATTGATTGTGATTTTGAGATAGTAAAAGAACTTTAGTTGTACCAAAATAAATCTCATAAATTATTTAATTGGAGTTAACTTATTTGATCATGGTGCACAATAATAATTGTAATAATGATATAGGGACTATTGAGAGTGACACAAAAAGAAGGGAAGAAAACGAAGGTTGAAATTCTAGCAGATGAACATGACGGATTAAAATTCAAGTTAACAGATGGGGTTGATGTAGGTGAAGATGGTACAATTTATTTCACAGACGCTACATACAAATACAATTTGAATGATTTCTACAACGATATCTTGGAAGGTGAACCTCATGGTAGATTCATGAGCTATAATCCAGCAACAAAAAAGGTTACATTGCTTGCCCGTAACCTCTACTTTGCTAATGGAGTTGCAGTTGCACCTGATCAAAAATTTGTTGTCTACTGTGAAACTGCTATGTAAGTAATAACAATTTAGTTGCACCCACTCTTTAATTTAGTCGACAATCATGCTATCGAGTACCCTTAAGATATTAGTTAAAGAAAATTCTAAAAAAAAAAAAAAAACTTTTTTTTAAAAATAACATTTTAAATTTAAAGAAAAAAGAGTTGAATACACACTTTTTAATTATATTAGTTGTCTTAAATTGTGCCATTATAATACTTGTTAGTATTTTTTAATTATATATAATAAGTAATCCTTATAAATTCTACAAAATCCTTGAATTTTGTCTCAACCATCAATTGTCATTGTTAGTGTTTTGAATAATTTTCAACTATTGGTCCCGGACCATAGAATTTGCCCTTGTTTAAATAATTAAACTTTTTTTTTATGGGAATTAAACTTATTTATGAAAGACTGATTTTACAGGAGTAGGTGCAGAAAATATTACCTACAAGGTCCCAAAAAAGGAAGAATAGGCGAATTTTCTCCTGACCTACCCGGCATGCCAGATAATATTCATTATGTTGGAAAAGGGCAGTATTTTATTGGAACGGCCTTGGTAAGATGATTCTTAATTAACTTTAAATTTTCACTTAGTATTATCGACTAGTCTAAATTATTTATTTTGCATAGAGTTAAATGAGTTAAATATGTTTTTAAAGTTCACCAATAACTGATTAATCAAAGTGGTAAAAAATTTGAACTTTTTAAGGAAATGATCAAGAGTTCAATTGTAGTTTTTGGCTATGGAAAAATTTGATTGGAAATGAAGAACTAACAAAATATTATAATTTTTGTGCTACACTTGGAATACTAGTGAACAGTGGTAATTATTAAAAAAAAAAAAAAACTATAGGTTAATTACAAATTTTGCCACATTGCATTTATGTTCGGTTTTAGCCCCTTAATAATTTTGGTCAAAGCAAGATTATTTTTGGGTTAAAGTATTATTATTACGAAGTTTTCACGGTCGATTTGTAAAATTGCAAGATTTTTATAATGAAACAGTCATAACTAAAATCAAAATAAATCCCTTATATACTCTGGTTTATAGTATACAAAATGAAGCTGATTTCTAATGCATGTTTTGTGTTTTAATGGCAGTCAATAACTTCTCAATGGGAATTATTACTTAGATATCCTTTCCTTCGAAAAACTGCAGCAATGGTTACAAAGCATTTTAGAAGACCAAAACTAGGGATTAATGGGGGAGTTATAGTTGTGGATTTGGCAGGAAAGGTTACAGATCACTATTATGATCTCCAACTATCATTGATTTCAAGTGGGATCAAAGTTGATAATTATATATATTGTGGTTCCTCTTATTATCCGTTTTTACTACGGCTAGATGTGAAGCAATATCCTGCACTTCCCTCAGCATGA

Protein sequence

>MS.gene23775.t1

MAKPTTSESSSVSSPPLQTKQTRSCLSTTTILLIIAFPVALAAILYKLGQFELVHFPARELPSQTPTAPTVNPHMWVGSEVVVEGRVDGPEDLAYDKKRRLIYTGCEDGWIKRITVNESVADSMVENWVHTGGRPLGLALEKTGELIVADADLGLLRVTQKEGKKTKVEILADEHDGLKFKLTDGVDVGEDGTIYFTDATYKYNLNDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANGVAVAPDQKFVVYCETAMSRCRKYYLQGPKKGRIGEFSPDLPGMPDNIHYVGKGQYFIGTALSITSQWELLLRYPFLRKTAAMVTKHFRRPKLGINGGVIVVDLAGKVTDHYYDLQLSLISSGIKVDNYIYCGSSYYPFLLRLDVKQYPALPSA