Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23775.t1 | XP_004509419.2 | 74.2 | 392 | 96 | 2 | 6 | 394 | 3 | 392 | 2.40E-163 | 585.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23775.t1 | Q9SD05 | 48.4 | 368 | 183 | 4 | 26 | 392 | 5 | 366 | 2.6e-97 | 357.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23775.t1 | A0A1S2YSY8 | 74.2 | 392 | 96 | 2 | 6 | 394 | 3 | 392 | 1.8e-163 | 585.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene23780 | MS.gene23775 | PPI |
MS.gene061292 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene017554 | PPI |
MS.gene23775 | MS.gene98728 | PPI |
MS.gene27212 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene034366 | PPI |
MS.gene23776 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene27211 | PPI |
MS.gene017558 | MS.gene23775 | PPI |
MS.gene037809 | MS.gene23775 | PPI |
MS.gene052008 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene23780 | PPI |
MS.gene23775 | MS.gene35719 | PPI |
MS.gene017556 | MS.gene23775 | PPI |
MS.gene059296 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene017555 | PPI |
MS.gene037810 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene27210 | PPI |
MS.gene23775 | MS.gene23779 | PPI |
MS.gene23775 | MS.gene85273 | PPI |
MS.gene23775 | MS.gene61630 | PPI |
MS.gene23775 | MS.gene037812 | PPI |
MS.gene66625 | MS.gene23775 | PPI |
MS.gene23775 | MS.gene032181 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23775.t1 | MTR_8g074210 | 57.067 | 375 | 150 | 5 | 21 | 395 | 11 | 374 | 9.68e-149 | 426 |
MS.gene23775.t1 | MTR_8g074170 | 56.533 | 375 | 152 | 5 | 21 | 395 | 11 | 374 | 3.01e-147 | 422 |
MS.gene23775.t1 | MTR_8g074270 | 56.267 | 375 | 153 | 5 | 21 | 395 | 11 | 374 | 2.17e-146 | 420 |
MS.gene23775.t1 | MTR_8g074320 | 81.068 | 206 | 18 | 4 | 56 | 260 | 37 | 222 | 2.84e-112 | 328 |
MS.gene23775.t1 | MTR_8g074290 | 96.364 | 110 | 2 | 1 | 261 | 370 | 45 | 152 | 3.12e-72 | 223 |
MS.gene23775.t1 | MTR_2g042430 | 33.945 | 327 | 176 | 9 | 84 | 396 | 71 | 371 | 1.31e-49 | 172 |
MS.gene23775.t1 | MTR_2g042370 | 33.227 | 313 | 176 | 8 | 84 | 382 | 59 | 352 | 7.76e-48 | 167 |
MS.gene23775.t1 | MTR_1g075865 | 68.224 | 107 | 33 | 1 | 186 | 292 | 7 | 112 | 1.13e-47 | 159 |
MS.gene23775.t1 | MTR_2g042420 | 32.692 | 312 | 178 | 10 | 84 | 382 | 52 | 344 | 3.09e-46 | 162 |
MS.gene23775.t1 | MTR_4g050190 | 29.744 | 390 | 237 | 11 | 26 | 382 | 1 | 386 | 1.65e-42 | 153 |
MS.gene23775.t1 | MTR_2g087780 | 32.817 | 323 | 187 | 8 | 26 | 322 | 4 | 322 | 1.09e-39 | 146 |
MS.gene23775.t1 | MTR_2g099030 | 35.165 | 273 | 144 | 7 | 84 | 333 | 77 | 339 | 1.24e-37 | 140 |
MS.gene23775.t1 | MTR_7g490330 | 36.122 | 263 | 144 | 8 | 86 | 328 | 44 | 302 | 2.67e-36 | 135 |
MS.gene23775.t1 | MTR_7g490350 | 34.130 | 293 | 155 | 10 | 28 | 300 | 2 | 276 | 9.14e-35 | 132 |
MS.gene23775.t1 | MTR_7g090300 | 32.407 | 324 | 177 | 11 | 89 | 382 | 53 | 364 | 2.31e-34 | 131 |
MS.gene23775.t1 | MTR_7g090310 | 30.409 | 342 | 200 | 9 | 79 | 386 | 48 | 385 | 4.77e-33 | 128 |
MS.gene23775.t1 | MTR_7g090320 | 30.723 | 332 | 193 | 9 | 89 | 386 | 58 | 386 | 5.20e-33 | 127 |
MS.gene23775.t1 | MTR_5g091980 | 33.607 | 244 | 139 | 7 | 89 | 313 | 48 | 287 | 3.29e-30 | 119 |
MS.gene23775.t1 | MTR_4g112670 | 33.906 | 233 | 131 | 6 | 87 | 300 | 37 | 265 | 3.79e-29 | 116 |
MS.gene23775.t1 | MTR_4g112630 | 33.898 | 236 | 130 | 7 | 87 | 300 | 36 | 267 | 9.91e-27 | 109 |
MS.gene23775.t1 | MTR_2g058450 | 32.328 | 232 | 135 | 6 | 89 | 301 | 40 | 268 | 2.36e-25 | 105 |
MS.gene23775.t1 | MTR_4g112650 | 33.476 | 233 | 130 | 8 | 89 | 300 | 38 | 266 | 3.19e-25 | 105 |
MS.gene23775.t1 | MTR_2g058410 | 36.364 | 176 | 89 | 7 | 136 | 300 | 1 | 164 | 1.60e-21 | 92.8 |
MS.gene23775.t1 | MTR_0003s0530 | 35.833 | 120 | 75 | 2 | 182 | 300 | 2 | 120 | 3.00e-17 | 80.1 |
MS.gene23775.t1 | MTR_8g075500 | 69.565 | 46 | 10 | 1 | 106 | 151 | 173 | 214 | 1.91e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23775.t1 | AT3G51440 | 48.370 | 368 | 183 | 4 | 26 | 392 | 5 | 366 | 5.65e-121 | 355 |
MS.gene23775.t1 | AT3G51450 | 46.196 | 368 | 191 | 4 | 26 | 392 | 5 | 366 | 1.25e-113 | 337 |
MS.gene23775.t1 | AT3G51430 | 44.959 | 367 | 195 | 4 | 27 | 392 | 6 | 366 | 9.68e-112 | 332 |
MS.gene23775.t1 | AT3G51430 | 45.232 | 367 | 192 | 5 | 27 | 392 | 6 | 364 | 4.43e-111 | 330 |
MS.gene23775.t1 | AT3G51420 | 45.652 | 368 | 193 | 4 | 26 | 392 | 5 | 366 | 1.06e-110 | 329 |
MS.gene23775.t1 | AT5G22020 | 35.249 | 261 | 145 | 6 | 79 | 320 | 65 | 320 | 3.23e-41 | 150 |
MS.gene23775.t1 | AT5G22020 | 35.249 | 261 | 145 | 6 | 79 | 320 | 65 | 320 | 3.23e-41 | 150 |
MS.gene23775.t1 | AT5G22020 | 35.249 | 261 | 145 | 6 | 79 | 320 | 65 | 320 | 3.23e-41 | 150 |
MS.gene23775.t1 | AT1G08470 | 34.483 | 261 | 149 | 6 | 79 | 321 | 59 | 315 | 2.12e-38 | 142 |
MS.gene23775.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.17e-36 | 138 |
MS.gene23775.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.17e-36 | 138 |
MS.gene23775.t1 | AT3G59530 | 33.948 | 271 | 146 | 7 | 86 | 333 | 81 | 341 | 1.17e-36 | 138 |
MS.gene23775.t1 | AT3G57030 | 29.923 | 391 | 213 | 13 | 30 | 382 | 2 | 369 | 5.76e-36 | 135 |
MS.gene23775.t1 | AT3G57020 | 29.538 | 325 | 201 | 9 | 87 | 388 | 51 | 370 | 1.26e-32 | 126 |
MS.gene23775.t1 | AT3G57020 | 29.936 | 314 | 200 | 9 | 87 | 388 | 51 | 356 | 1.84e-30 | 120 |
MS.gene23775.t1 | AT3G57010 | 28.107 | 338 | 199 | 12 | 87 | 393 | 52 | 376 | 1.81e-29 | 117 |
MS.gene23775.t1 | AT1G74010 | 36.170 | 235 | 127 | 8 | 89 | 305 | 37 | 266 | 2.33e-29 | 116 |
MS.gene23775.t1 | AT2G41290 | 30.091 | 329 | 185 | 11 | 89 | 381 | 51 | 370 | 5.84e-29 | 116 |
MS.gene23775.t1 | AT1G74020 | 30.798 | 263 | 148 | 8 | 89 | 321 | 38 | 296 | 4.58e-27 | 110 |
MS.gene23775.t1 | AT2G41300 | 28.824 | 340 | 214 | 11 | 64 | 386 | 64 | 392 | 4.66e-26 | 108 |
MS.gene23775.t1 | AT1G74000 | 29.876 | 241 | 147 | 7 | 83 | 305 | 34 | 270 | 3.11e-24 | 102 |
Find 90 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGACTCGATGGTTGAAAAT+TGG | 0.257497 | 8.4:+30427585 | MS.gene23775:CDS |
CCAACATAATGAATATTATC+TGG | 0.284932 | 8.4:-30429184 | None:intergenic |
AGACCAAAACTAGGGATTAA+TGG | 0.305795 | 8.4:+30429864 | MS.gene23775:CDS |
GACCAAAACTAGGGATTAAT+GGG | 0.325402 | 8.4:+30429865 | MS.gene23775:CDS |
GAAGAGGCGTCTTATATATA+CGG | 0.329151 | 8.4:+30427514 | MS.gene23775:CDS |
TTATCATAAGCCAAGTCTTC+AGG | 0.342505 | 8.4:-30427491 | None:intergenic |
GGGAGTTATAGTTGTGGATT+TGG | 0.359842 | 8.4:+30429887 | MS.gene23775:CDS |
CGTAACCTCTACTTTGCTAA+TGG | 0.369732 | 8.4:+30428619 | MS.gene23775:CDS |
AATATTCATTATGTTGGAAA+AGG | 0.377022 | 8.4:+30429190 | MS.gene23775:CDS |
TGATTTCTACAACGATATCT+TGG | 0.381372 | 8.4:+30428531 | MS.gene23775:CDS |
CTTATTAATCATAGCTTTCC+CGG | 0.384597 | 8.4:+30427316 | MS.gene23775:CDS |
AAGACCACTTGGACTTGCTT+TGG | 0.385209 | 8.4:+30427622 | MS.gene23775:CDS |
AGAAGAAACACTGCTTGATT+CGG | 0.405140 | 8.4:-30427243 | None:intergenic |
CTGCTTGATTCGGACGTTGT+TGG | 0.405730 | 8.4:-30427233 | None:intergenic |
GGACTTGCTTTGGAGAAAAC+TGG | 0.410861 | 8.4:+30427632 | MS.gene23775:CDS |
GGGTTGACAGTTGGAGCCGT+GGG | 0.426206 | 8.4:-30427419 | None:intergenic |
TGACTCGATGGTTGAAAATT+GGG | 0.426472 | 8.4:+30427586 | MS.gene23775:CDS |
GTGGTGGAGGGTAGGGTAGA+TGG | 0.431819 | 8.4:+30427467 | MS.gene23775:CDS |
TCTGGCATGCCGGGTAGGTC+AGG | 0.444845 | 8.4:-30429166 | None:intergenic |
AACTGGTTCACTTTCCAGCC+AGG | 0.445181 | 8.4:+30427378 | MS.gene23775:CDS |
CCAGATAATATTCATTATGT+TGG | 0.449275 | 8.4:+30429184 | MS.gene23775:CDS |
GGCAGTCAATAACTTCTCAA+TGG | 0.453895 | 8.4:+30429778 | MS.gene23775:intron |
TGGTTCCGAAGTCGTGGTGG+AGG | 0.455201 | 8.4:+30427454 | MS.gene23775:CDS |
CACTTGAAATCAATGATAGT+TGG | 0.463840 | 8.4:-30429941 | None:intergenic |
CATAGTTGCGGACGCTGACT+TGG | 0.467767 | 8.4:+30427661 | MS.gene23775:CDS |
GTTATAGTTGTGGATTTGGC+AGG | 0.469059 | 8.4:+30429891 | MS.gene23775:CDS |
ATGAATATTATCTGGCATGC+CGG | 0.469077 | 8.4:-30429176 | None:intergenic |
GCAGTCAATAACTTCTCAAT+GGG | 0.474333 | 8.4:+30429779 | MS.gene23775:intron |
ATTAGCAAAGTAGAGGTTAC+GGG | 0.474734 | 8.4:-30428617 | None:intergenic |
CCGAAGTCGTGGTGGAGGGT+AGG | 0.476263 | 8.4:+30427459 | MS.gene23775:CDS |
CACACTGGTGGAAGACCACT+TGG | 0.484706 | 8.4:+30427611 | MS.gene23775:CDS |
ACGAATTACTGTGAATGAAT+CGG | 0.488343 | 8.4:+30427559 | MS.gene23775:CDS |
CGGGTTGACAGTTGGAGCCG+TGG | 0.489834 | 8.4:-30427420 | None:intergenic |
CATTAGCAAAGTAGAGGTTA+CGG | 0.491944 | 8.4:-30428618 | None:intergenic |
TTAAAATTCAAGTTAACAGA+TGG | 0.493578 | 8.4:+30428445 | MS.gene23775:CDS |
AGTTGTGGATTTGGCAGGAA+AGG | 0.494082 | 8.4:+30429896 | MS.gene23775:CDS |
CGGAACCAACCCACATGTGC+GGG | 0.494965 | 8.4:-30427439 | None:intergenic |
CGAAGTCGTGGTGGAGGGTA+GGG | 0.495803 | 8.4:+30427460 | MS.gene23775:CDS |
TTGACTGTTGTTCATGCTGA+GGG | 0.500774 | 8.4:-30430050 | None:intergenic |
CAAACTCGGACAGTTTGAAC+TGG | 0.503297 | 8.4:+30427361 | MS.gene23775:CDS |
TGAATATTATCTGGCATGCC+GGG | 0.508137 | 8.4:-30429175 | None:intergenic |
GGTTTGCGAGGGTAACTCCC+TGG | 0.511440 | 8.4:-30427396 | None:intergenic |
GTTGATAATTATATATATTG+TGG | 0.512752 | 8.4:+30429972 | MS.gene23775:CDS |
ATACGGGTTGTGAGGATGGA+TGG | 0.521741 | 8.4:+30427531 | MS.gene23775:CDS |
TAAAATTCAAGTTAACAGAT+GGG | 0.522474 | 8.4:+30428446 | MS.gene23775:CDS |
ATATTCATTATGTTGGAAAA+GGG | 0.525563 | 8.4:+30429191 | MS.gene23775:CDS |
GGGGTTGATGTAGGTGAAGA+TGG | 0.525866 | 8.4:+30428466 | MS.gene23775:CDS |
AGAATAGCAGCTAATGCTAC+CGG | 0.526322 | 8.4:-30427335 | None:intergenic |
CAACTATCATTGATTTCAAG+TGG | 0.527805 | 8.4:+30429942 | MS.gene23775:CDS |
CAACTGTCAACCCGCACATG+TGG | 0.533793 | 8.4:+30427429 | MS.gene23775:CDS |
ATATATACGGGTTGTGAGGA+TGG | 0.540191 | 8.4:+30427527 | MS.gene23775:CDS |
GTTGACTGTTGTTCATGCTG+AGG | 0.542452 | 8.4:-30430051 | None:intergenic |
CACATGTGCGGGTTGACAGT+TGG | 0.545258 | 8.4:-30427428 | None:intergenic |
GGTAGATGGACCTGAAGACT+TGG | 0.547168 | 8.4:+30427481 | MS.gene23775:CDS |
TGCGAGGGTAACTCCCTGGC+TGG | 0.549549 | 8.4:-30427392 | None:intergenic |
TTAACAGATGGGGTTGATGT+AGG | 0.553836 | 8.4:+30428457 | MS.gene23775:CDS |
AAGAGGCGTCTTATATATAC+GGG | 0.565621 | 8.4:+30427515 | MS.gene23775:CDS |
CCTACCCTCCACCACGACTT+CGG | 0.566937 | 8.4:-30427459 | None:intergenic |
AAAATTCAAGTTAACAGATG+GGG | 0.568583 | 8.4:+30428447 | MS.gene23775:CDS |
TATTATCTGGCATGCCGGGT+AGG | 0.575920 | 8.4:-30429171 | None:intergenic |
TTCTACAACGATATCTTGGA+AGG | 0.580448 | 8.4:+30428535 | MS.gene23775:CDS |
GGTTGACAGTTGGAGCCGTG+GGG | 0.584683 | 8.4:-30427418 | None:intergenic |
AACTATCATTGATTTCAAGT+GGG | 0.585821 | 8.4:+30429943 | MS.gene23775:CDS |
GTTGACAGTTGGAGCCGTGG+GGG | 0.589619 | 8.4:-30427417 | None:intergenic |
GAAAATTGGGTTCACACTGG+TGG | 0.592486 | 8.4:+30427599 | MS.gene23775:CDS |
GTTCATGCTGAGGGAAGTGC+AGG | 0.600630 | 8.4:-30430041 | None:intergenic |
TGCAGAAAATATTACCTACA+AGG | 0.602205 | 8.4:+30429112 | MS.gene23775:CDS |
ACTGGTTCACTTTCCAGCCA+GGG | 0.604623 | 8.4:+30427379 | MS.gene23775:CDS |
AACTGTCAACCCGCACATGT+GGG | 0.607719 | 8.4:+30427430 | MS.gene23775:CDS |
GTCAACCCGCACATGTGGGT+TGG | 0.608093 | 8.4:+30427434 | MS.gene23775:CDS |
GAATAGCAGCTAATGCTACC+GGG | 0.612763 | 8.4:-30427334 | None:intergenic |
TCGGAACCAACCCACATGTG+CGG | 0.613661 | 8.4:-30427440 | None:intergenic |
TTCTCCAAAGCAAGTCCAAG+TGG | 0.616513 | 8.4:-30427626 | None:intergenic |
TCTTATATATACGGGTTGTG+AGG | 0.617398 | 8.4:+30427523 | MS.gene23775:CDS |
GGTTCCGAAGTCGTGGTGGA+GGG | 0.619218 | 8.4:+30427455 | MS.gene23775:CDS |
TGAATCGGTGGCTGACTCGA+TGG | 0.624849 | 8.4:+30427574 | MS.gene23775:CDS |
CAACTCCATTAGCAAAGTAG+AGG | 0.625379 | 8.4:-30428624 | None:intergenic |
GTGGGTTGGTTCCGAAGTCG+TGG | 0.630335 | 8.4:+30427448 | MS.gene23775:CDS |
ACTTGGCTTATGATAAGAAG+AGG | 0.631927 | 8.4:+30427498 | MS.gene23775:CDS |
GGTTGGTTCCGAAGTCGTGG+TGG | 0.639619 | 8.4:+30427451 | MS.gene23775:CDS |
GCTGCTATTCTCTACAAACT+CGG | 0.641756 | 8.4:+30427347 | MS.gene23775:CDS |
GTTGAAAATTGGGTTCACAC+TGG | 0.650996 | 8.4:+30427596 | MS.gene23775:CDS |
AACTGGTGAACTCATAGTTG+CGG | 0.661307 | 8.4:+30427649 | MS.gene23775:CDS |
ATCTTGGAAGGTGAACCTCA+TGG | 0.664644 | 8.4:+30428547 | MS.gene23775:CDS |
ATTCTAGCAGATGAACATGA+CGG | 0.671427 | 8.4:+30428421 | MS.gene23775:CDS |
ACCAAAACTAGGGATTAATG+GGG | 0.671442 | 8.4:+30429866 | MS.gene23775:CDS |
AAAAGAAGGGAAGAAAACGA+AGG | 0.706726 | 8.4:+30428393 | MS.gene23775:CDS |
AATTACTGTGAATGAATCGG+TGG | 0.717583 | 8.4:+30427562 | MS.gene23775:CDS |
TAGCTCATGAATCTACCATG+AGG | 0.726341 | 8.4:-30428562 | None:intergenic |
CCAAAACTAGGGATTAATGG+GGG | 0.727146 | 8.4:+30429867 | MS.gene23775:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGTTTAATTATTTAAACA+AGG | - | chr8.4:30429040-30429059 | None:intergenic | 10.0% |
!! | AAGTTTAATTATTTAAACAA+GGG | - | chr8.4:30429039-30429058 | None:intergenic | 10.0% |
!! | AATAATTGTAATAATGATAT+AGG | + | chr8.4:30428351-30428370 | MS.gene23775:intron | 10.0% |
!! | AATCTCATAAATTATTTAAT+TGG | + | chr8.4:30428299-30428318 | MS.gene23775:intron | 10.0% |
!! | ATAATTGTAATAATGATATA+GGG | + | chr8.4:30428352-30428371 | MS.gene23775:intron | 10.0% |
!!! | AGATTATTTTTACAAAAAAA+TGG | + | chr8.4:30427720-30427739 | MS.gene23775:intron | 10.0% |
!!! | ATAATTTATGAGATTTATTT+TGG | - | chr8.4:30428294-30428313 | None:intergenic | 10.0% |
!!! | TAAAAAATTTGAACTTTTTA+AGG | + | chr8.4:30429369-30429388 | MS.gene23775:intron | 10.0% |
!!! | TTATCAAATTTTAAAATAAG+AGG | - | chr8.4:30427823-30427842 | None:intergenic | 10.0% |
!! | AATACTAACAAGTATTATAA+TGG | - | chr8.4:30428889-30428908 | None:intergenic | 15.0% |
!! | CGTAAAATAATAAAAATAGA+GGG | - | chr8.4:30427792-30427811 | None:intergenic | 15.0% |
!! | TATTCATTTGAAAAATTCTT+TGG | + | chr8.4:30428045-30428064 | MS.gene23775:intron | 15.0% |
!! | TCGTAAAATAATAAAAATAG+AGG | - | chr8.4:30427793-30427812 | None:intergenic | 15.0% |
!! | TTCTTTAACTAATATCTTAA+GGG | - | chr8.4:30428759-30428778 | None:intergenic | 15.0% |
!! | TTTCTTTAACTAATATCTTA+AGG | - | chr8.4:30428760-30428779 | None:intergenic | 15.0% |
!!! | GTTGATAATTATATATATTG+TGG | + | chr8.4:30429972-30429991 | MS.gene23775:CDS | 15.0% |
!!! | TTTGAATAATTTTCAACTAT+TGG | + | chr8.4:30428994-30429013 | MS.gene23775:intron | 15.0% |
!!! | TTTTAACTCTAAATATTTGA+TGG | - | chr8.4:30427855-30427874 | None:intergenic | 15.0% |
!! | AATATTCATTATGTTGGAAA+AGG | + | chr8.4:30429190-30429209 | MS.gene23775:CDS | 20.0% |
!! | ATATTCATTATGTTGGAAAA+GGG | + | chr8.4:30429191-30429210 | MS.gene23775:CDS | 20.0% |
!! | TATTTACATAGATCCATTAT+GGG | - | chr8.4:30427692-30427711 | None:intergenic | 20.0% |
!!! | AGGATTTTGTAGAATTTATA+AGG | - | chr8.4:30428936-30428955 | None:intergenic | 20.0% |
!!! | TAAAATTCAAGTTAACAGAT+GGG | + | chr8.4:30428446-30428465 | MS.gene23775:CDS | 20.0% |
!!! | TTAAAATTCAAGTTAACAGA+TGG | + | chr8.4:30428445-30428464 | MS.gene23775:CDS | 20.0% |
!!! | TTATTATTACGAAGTTTTCA+CGG | + | chr8.4:30429626-30429645 | MS.gene23775:intron | 20.0% |
!!! | TTTAAGTTTAATAACGGTTT+TGG | + | chr8.4:30427765-30427784 | MS.gene23775:intron | 20.0% |
! | AATAAATCCCTTATATACTC+TGG | + | chr8.4:30429703-30429722 | MS.gene23775:intron | 25.0% |
! | AATTAAGAATCATCTTACCA+AGG | - | chr8.4:30429236-30429255 | None:intergenic | 25.0% |
! | ACTATAAACCAGAGTATATA+AGG | - | chr8.4:30429714-30429733 | None:intergenic | 25.0% |
! | CAATAACTGATTAATCAAAG+TGG | + | chr8.4:30429346-30429365 | MS.gene23775:intron | 25.0% |
! | CACTTTGATTAATCAGTTAT+TGG | - | chr8.4:30429348-30429367 | None:intergenic | 25.0% |
! | CCAACATAATGAATATTATC+TGG | - | chr8.4:30429187-30429206 | None:intergenic | 25.0% |
! | CCAGATAATATTCATTATGT+TGG | + | chr8.4:30429184-30429203 | MS.gene23775:CDS | 25.0% |
! | CTATAAACCAGAGTATATAA+GGG | - | chr8.4:30429713-30429732 | None:intergenic | 25.0% |
! | CTATTTACATAGATCCATTA+TGG | - | chr8.4:30427693-30427712 | None:intergenic | 25.0% |
! | CTTTGACCAAAATTATTAAG+GGG | - | chr8.4:30429582-30429601 | None:intergenic | 25.0% |
! | GCTTTGACCAAAATTATTAA+GGG | - | chr8.4:30429583-30429602 | None:intergenic | 25.0% |
! | TAGTAAAAACGGATAATAAG+AGG | - | chr8.4:30430000-30430019 | None:intergenic | 25.0% |
! | TGCTTTGACCAAAATTATTA+AGG | - | chr8.4:30429584-30429603 | None:intergenic | 25.0% |
!! | AAAATTCAAGTTAACAGATG+GGG | + | chr8.4:30428447-30428466 | MS.gene23775:CDS | 25.0% |
!! | AAGAGTTCAATTGTAGTTTT+TGG | + | chr8.4:30429400-30429419 | MS.gene23775:intron | 25.0% |
!! | TAGACAACAAATTTTTGATC+AGG | - | chr8.4:30428658-30428677 | None:intergenic | 25.0% |
!! | TATAATTTTTGTGCTACACT+TGG | + | chr8.4:30429465-30429484 | MS.gene23775:intron | 25.0% |
!! | TTTTAGCCCCTTAATAATTT+TGG | + | chr8.4:30429573-30429592 | MS.gene23775:intron | 25.0% |
!!! | AACTATCATTGATTTCAAGT+GGG | + | chr8.4:30429943-30429962 | MS.gene23775:CDS | 25.0% |
!!! | ATGCATGTTTTGTGTTTTAA+TGG | + | chr8.4:30429757-30429776 | MS.gene23775:intron | 25.0% |
!!! | ATTTTAGAAGACCAAAACTA+GGG | + | chr8.4:30429856-30429875 | MS.gene23775:CDS | 25.0% |
!!! | CTTATTATCCGTTTTTACTA+CGG | + | chr8.4:30430000-30430019 | MS.gene23775:CDS | 25.0% |
!!! | GTCAAAGCAAGATTATTTTT+GGG | + | chr8.4:30429595-30429614 | MS.gene23775:intron | 25.0% |
!!! | TTATGAAAGACTGATTTTAC+AGG | + | chr8.4:30429083-30429102 | MS.gene23775:intron | 25.0% |
ACACTAACAATGACAATTGA+TGG | - | chr8.4:30428974-30428993 | None:intergenic | 30.0% | |
ACGAATTACTGTGAATGAAT+CGG | + | chr8.4:30427559-30427578 | MS.gene23775:CDS | 30.0% | |
CACTTGAAATCAATGATAGT+TGG | - | chr8.4:30429944-30429963 | None:intergenic | 30.0% | |
CTATAATCCAGCAACAAAAA+AGG | + | chr8.4:30428582-30428601 | MS.gene23775:CDS | 30.0% | |
CTTATTAATCATAGCTTTCC+CGG | + | chr8.4:30427316-30427335 | MS.gene23775:CDS | 30.0% | |
GGAGTTAACTTATTTGATCA+TGG | + | chr8.4:30428320-30428339 | MS.gene23775:intron | 30.0% | |
TGATTTCTACAACGATATCT+TGG | + | chr8.4:30428531-30428550 | MS.gene23775:CDS | 30.0% | |
TGCAGAAAATATTACCTACA+AGG | + | chr8.4:30429112-30429131 | MS.gene23775:CDS | 30.0% | |
TGGCTATGGAAAAATTTGAT+TGG | + | chr8.4:30429420-30429439 | MS.gene23775:intron | 30.0% | |
TTAAACAAGGGCAAATTCTA+TGG | - | chr8.4:30429027-30429046 | None:intergenic | 30.0% | |
! | GGTCAAAGCAAGATTATTTT+TGG | + | chr8.4:30429594-30429613 | MS.gene23775:intron | 30.0% |
! | TAATTTTCAACTATTGGTCC+CGG | + | chr8.4:30429000-30429019 | MS.gene23775:intron | 30.0% |
! | TGTCGACTAAATTAAAGAGT+GGG | - | chr8.4:30428720-30428739 | None:intergenic | 30.0% |
! | TTCTTTGGTACAAGTACTTT+TGG | + | chr8.4:30428060-30428079 | MS.gene23775:intron | 30.0% |
! | TTGTCGACTAAATTAAAGAG+TGG | - | chr8.4:30428721-30428740 | None:intergenic | 30.0% |
!! | CAACTATCATTGATTTCAAG+TGG | + | chr8.4:30429942-30429961 | MS.gene23775:CDS | 30.0% |
!! | CATTTTAGAAGACCAAAACT+AGG | + | chr8.4:30429855-30429874 | MS.gene23775:CDS | 30.0% |
!!! | AATGTAACCTTTTTTGTTGC+TGG | - | chr8.4:30428592-30428611 | None:intergenic | 30.0% |
!!! | CTTGTTTGTTTTGTTTGAAG+TGG | - | chr8.4:30427272-30427291 | None:intergenic | 30.0% |
!!! | TCAATTGTAGTTTTTGGCTA+TGG | + | chr8.4:30429406-30429425 | MS.gene23775:intron | 30.0% |
AAAAGAAGGGAAGAAAACGA+AGG | + | chr8.4:30428393-30428412 | MS.gene23775:CDS | 35.0% | |
AACCGAACATAAATGCAATG+TGG | - | chr8.4:30429555-30429574 | None:intergenic | 35.0% | |
AATTACTGTGAATGAATCGG+TGG | + | chr8.4:30427562-30427581 | MS.gene23775:CDS | 35.0% | |
ACATCTAGCCGTAGTAAAAA+CGG | - | chr8.4:30430011-30430030 | None:intergenic | 35.0% | |
ACCAAAACTAGGGATTAATG+GGG | + | chr8.4:30429866-30429885 | MS.gene23775:CDS | 35.0% | |
ACTTGGCTTATGATAAGAAG+AGG | + | chr8.4:30427498-30427517 | MS.gene23775:CDS | 35.0% | |
AGAAGAAACACTGCTTGATT+CGG | - | chr8.4:30427246-30427265 | None:intergenic | 35.0% | |
AGACCAAAACTAGGGATTAA+TGG | + | chr8.4:30429864-30429883 | MS.gene23775:CDS | 35.0% | |
AGCATGTACTAGAGTAATGT+TGG | + | chr8.4:30427969-30427988 | MS.gene23775:intron | 35.0% | |
ATGAATATTATCTGGCATGC+CGG | - | chr8.4:30429179-30429198 | None:intergenic | 35.0% | |
ATTAGCAAAGTAGAGGTTAC+GGG | - | chr8.4:30428620-30428639 | None:intergenic | 35.0% | |
ATTCTAGCAGATGAACATGA+CGG | + | chr8.4:30428421-30428440 | MS.gene23775:CDS | 35.0% | |
CATTAGCAAAGTAGAGGTTA+CGG | - | chr8.4:30428621-30428640 | None:intergenic | 35.0% | |
GACCAAAACTAGGGATTAAT+GGG | + | chr8.4:30429865-30429884 | MS.gene23775:CDS | 35.0% | |
GATGGTTGAGACAAAATTCA+AGG | - | chr8.4:30428956-30428975 | None:intergenic | 35.0% | |
GCAGTCAATAACTTCTCAAT+GGG | + | chr8.4:30429779-30429798 | MS.gene23775:intron | 35.0% | |
GCATGTATACGTTGTATAGA+AGG | + | chr8.4:30427935-30427954 | MS.gene23775:intron | 35.0% | |
TGACTCGATGGTTGAAAATT+GGG | + | chr8.4:30427586-30427605 | MS.gene23775:CDS | 35.0% | |
TGAGAGTGACACAAAAAGAA+GGG | + | chr8.4:30428380-30428399 | MS.gene23775:CDS | 35.0% | |
TGCCACATTGCATTTATGTT+CGG | + | chr8.4:30429550-30429569 | MS.gene23775:intron | 35.0% | |
TTATCATAAGCCAAGTCTTC+AGG | - | chr8.4:30427494-30427513 | None:intergenic | 35.0% | |
TTCTACAACGATATCTTGGA+AGG | + | chr8.4:30428535-30428554 | MS.gene23775:CDS | 35.0% | |
TTGAGAGTGACACAAAAAGA+AGG | + | chr8.4:30428379-30428398 | MS.gene23775:CDS | 35.0% | |
! | AGGGCAGTATTTTATTGGAA+CGG | + | chr8.4:30429210-30429229 | MS.gene23775:CDS | 35.0% |
! | GGAAAAGGGCAGTATTTTAT+TGG | + | chr8.4:30429205-30429224 | MS.gene23775:CDS | 35.0% |
! | TCTTATATATACGGGTTGTG+AGG | + | chr8.4:30427523-30427542 | MS.gene23775:CDS | 35.0% |
!! | AAGACTGATTTTACAGGAGT+AGG | + | chr8.4:30429089-30429108 | MS.gene23775:intron | 35.0% |
!! | AAGAGGCGTCTTATATATAC+GGG | + | chr8.4:30427515-30427534 | MS.gene23775:CDS | 35.0% |
!! | GAAGAGGCGTCTTATATATA+CGG | + | chr8.4:30427514-30427533 | MS.gene23775:CDS | 35.0% |
!!! | GTTTGTTTTGTTTGAAGTGG+CGG | - | chr8.4:30427269-30427288 | None:intergenic | 35.0% |
!!! | TCGCCTATTCTTCCTTTTTT+GGG | - | chr8.4:30429139-30429158 | None:intergenic | 35.0% |
!!! | TTCGCCTATTCTTCCTTTTT+TGG | - | chr8.4:30429140-30429159 | None:intergenic | 35.0% |
AACTGGTGAACTCATAGTTG+CGG | + | chr8.4:30427649-30427668 | MS.gene23775:CDS | 40.0% | |
AGAATAGCAGCTAATGCTAC+CGG | - | chr8.4:30427338-30427357 | None:intergenic | 40.0% | |
CAACTCCATTAGCAAAGTAG+AGG | - | chr8.4:30428627-30428646 | None:intergenic | 40.0% | |
CCAAAACTAGGGATTAATGG+GGG | + | chr8.4:30429867-30429886 | MS.gene23775:CDS | 40.0% | |
CGTAACCTCTACTTTGCTAA+TGG | + | chr8.4:30428619-30428638 | MS.gene23775:CDS | 40.0% | |
CTTGGAATACTAGTGAACAG+TGG | + | chr8.4:30429483-30429502 | MS.gene23775:intron | 40.0% | |
GCTGCTATTCTCTACAAACT+CGG | + | chr8.4:30427347-30427366 | MS.gene23775:CDS | 40.0% | |
GGCAGTCAATAACTTCTCAA+TGG | + | chr8.4:30429778-30429797 | MS.gene23775:intron | 40.0% | |
GGGAGTTATAGTTGTGGATT+TGG | + | chr8.4:30429887-30429906 | MS.gene23775:CDS | 40.0% | |
GGTCCCAAAAAAGGAAGAAT+AGG | + | chr8.4:30429133-30429152 | MS.gene23775:CDS | 40.0% | |
GTTATAGTTGTGGATTTGGC+AGG | + | chr8.4:30429891-30429910 | MS.gene23775:CDS | 40.0% | |
GTTGAAAATTGGGTTCACAC+TGG | + | chr8.4:30427596-30427615 | MS.gene23775:CDS | 40.0% | |
TAATGGGGGAGTTATAGTTG+TGG | + | chr8.4:30429881-30429900 | MS.gene23775:CDS | 40.0% | |
TACCTACAAGGTCCCAAAAA+AGG | + | chr8.4:30429124-30429143 | MS.gene23775:CDS | 40.0% | |
TAGCTCATGAATCTACCATG+AGG | - | chr8.4:30428565-30428584 | None:intergenic | 40.0% | |
TGAATATTATCTGGCATGCC+GGG | - | chr8.4:30429178-30429197 | None:intergenic | 40.0% | |
! | ATATATACGGGTTGTGAGGA+TGG | + | chr8.4:30427527-30427546 | MS.gene23775:CDS | 40.0% |
! | CTGACTCGATGGTTGAAAAT+TGG | + | chr8.4:30427585-30427604 | MS.gene23775:CDS | 40.0% |
! | GTATTTTATTGGAACGGCCT+TGG | + | chr8.4:30429216-30429235 | MS.gene23775:CDS | 40.0% |
!! | TGACTTGGTATGTCCCATAA+TGG | + | chr8.4:30427676-30427695 | MS.gene23775:intron | 40.0% |
!! | TTAACAGATGGGGTTGATGT+AGG | + | chr8.4:30428457-30428476 | MS.gene23775:CDS | 40.0% |
!!! | TTCCTTTTTTGGGACCTTGT+AGG | - | chr8.4:30429129-30429148 | None:intergenic | 40.0% |
AAGGGCAAATTCTATGGTCC+GGG | - | chr8.4:30429021-30429040 | None:intergenic | 45.0% | |
AGTTGTGGATTTGGCAGGAA+AGG | + | chr8.4:30429896-30429915 | MS.gene23775:CDS | 45.0% | |
ATCTTGGAAGGTGAACCTCA+TGG | + | chr8.4:30428547-30428566 | MS.gene23775:CDS | 45.0% | |
CAAACTCGGACAGTTTGAAC+TGG | + | chr8.4:30427361-30427380 | MS.gene23775:CDS | 45.0% | |
CAAGGGCAAATTCTATGGTC+CGG | - | chr8.4:30429022-30429041 | None:intergenic | 45.0% | |
CCTTCGAAAAACTGCAGCAA+TGG | + | chr8.4:30429824-30429843 | MS.gene23775:CDS | 45.0% | |
GAAAATTGGGTTCACACTGG+TGG | + | chr8.4:30427599-30427618 | MS.gene23775:CDS | 45.0% | |
GAATAGCAGCTAATGCTACC+GGG | - | chr8.4:30427337-30427356 | None:intergenic | 45.0% | |
TTCTCCAAAGCAAGTCCAAG+TGG | - | chr8.4:30427629-30427648 | None:intergenic | 45.0% | |
! | AAGACCACTTGGACTTGCTT+TGG | + | chr8.4:30427622-30427641 | MS.gene23775:CDS | 45.0% |
! | CCCCCATTAATCCCTAGTTT+TGG | - | chr8.4:30429870-30429889 | None:intergenic | 45.0% |
! | GAATTTTCTCCTGACCTACC+CGG | + | chr8.4:30429157-30429176 | MS.gene23775:CDS | 45.0% |
!! | CCATTGCTGCAGTTTTTCGA+AGG | - | chr8.4:30429827-30429846 | None:intergenic | 45.0% |
!! | GCTGCAGTTTTTCGAAGGAA+AGG | - | chr8.4:30429822-30429841 | None:intergenic | 45.0% |
!! | GGACTTGCTTTGGAGAAAAC+TGG | + | chr8.4:30427632-30427651 | MS.gene23775:CDS | 45.0% |
!! | TAAAAAAAAAAAAAAACTAT+AGG | + | chr8.4:30429513-30429532 | MS.gene23775:intron | 5.0% |
!!! | ATAATTAAACTTTTTTTTTA+TGG | + | chr8.4:30429047-30429066 | MS.gene23775:intron | 5.0% |
!!! | TAATTAAACTTTTTTTTTAT+GGG | + | chr8.4:30429048-30429067 | MS.gene23775:intron | 5.0% |
!!! | TTTTATTTTAAGTTTAATAA+CGG | + | chr8.4:30427759-30427778 | MS.gene23775:intron | 5.0% |
AACTGTCAACCCGCACATGT+GGG | + | chr8.4:30427430-30427449 | MS.gene23775:CDS | 50.0% | |
GGTAGATGGACCTGAAGACT+TGG | + | chr8.4:30427481-30427500 | MS.gene23775:CDS | 50.0% | |
TATTATCTGGCATGCCGGGT+AGG | - | chr8.4:30429174-30429193 | None:intergenic | 50.0% | |
! | AACTGGTTCACTTTCCAGCC+AGG | + | chr8.4:30427378-30427397 | MS.gene23775:CDS | 50.0% |
! | ACTGGTTCACTTTCCAGCCA+GGG | + | chr8.4:30427379-30427398 | MS.gene23775:CDS | 50.0% |
! | ATACGGGTTGTGAGGATGGA+TGG | + | chr8.4:30427531-30427550 | MS.gene23775:CDS | 50.0% |
!! | CTGCTTGATTCGGACGTTGT+TGG | - | chr8.4:30427236-30427255 | None:intergenic | 50.0% |
!! | GGGGTTGATGTAGGTGAAGA+TGG | + | chr8.4:30428466-30428485 | MS.gene23775:CDS | 50.0% |
CAACTGTCAACCCGCACATG+TGG | + | chr8.4:30427429-30427448 | MS.gene23775:CDS | 55.0% | |
CACACTGGTGGAAGACCACT+TGG | + | chr8.4:30427611-30427630 | MS.gene23775:CDS | 55.0% | |
TCGGAACCAACCCACATGTG+CGG | - | chr8.4:30427443-30427462 | None:intergenic | 55.0% | |
! | CACATGTGCGGGTTGACAGT+TGG | - | chr8.4:30427431-30427450 | None:intergenic | 55.0% |
! | CATAGTTGCGGACGCTGACT+TGG | + | chr8.4:30427661-30427680 | MS.gene23775:CDS | 55.0% |
!! | TGAATCGGTGGCTGACTCGA+TGG | + | chr8.4:30427574-30427593 | MS.gene23775:CDS | 55.0% |
CCTACCCTCCACCACGACTT+CGG | - | chr8.4:30427462-30427481 | None:intergenic | 60.0% | |
CGGAACCAACCCACATGTGC+GGG | - | chr8.4:30427442-30427461 | None:intergenic | 60.0% | |
GGGTTGACAGTTGGAGCCGT+GGG | - | chr8.4:30427422-30427441 | None:intergenic | 60.0% | |
GGTTGACAGTTGGAGCCGTG+GGG | - | chr8.4:30427421-30427440 | None:intergenic | 60.0% | |
GGTTTGCGAGGGTAACTCCC+TGG | - | chr8.4:30427399-30427418 | None:intergenic | 60.0% | |
GTCAACCCGCACATGTGGGT+TGG | + | chr8.4:30427434-30427453 | MS.gene23775:CDS | 60.0% | |
GTTACCCTCGCAAACCCCCA+CGG | + | chr8.4:30427403-30427422 | MS.gene23775:CDS | 60.0% | |
GTTGACAGTTGGAGCCGTGG+GGG | - | chr8.4:30427420-30427439 | None:intergenic | 60.0% | |
TGGTTCCGAAGTCGTGGTGG+AGG | + | chr8.4:30427454-30427473 | MS.gene23775:CDS | 60.0% | |
! | CGAAGTCGTGGTGGAGGGTA+GGG | + | chr8.4:30427460-30427479 | MS.gene23775:CDS | 60.0% |
! | GGTTCCGAAGTCGTGGTGGA+GGG | + | chr8.4:30427455-30427474 | MS.gene23775:CDS | 60.0% |
! | GGTTGGTTCCGAAGTCGTGG+TGG | + | chr8.4:30427451-30427470 | MS.gene23775:CDS | 60.0% |
! | GTGGTGGAGGGTAGGGTAGA+TGG | + | chr8.4:30427467-30427486 | MS.gene23775:CDS | 60.0% |
!! | GTGGGTTGGTTCCGAAGTCG+TGG | + | chr8.4:30427448-30427467 | MS.gene23775:CDS | 60.0% |
TCTGGCATGCCGGGTAGGTC+AGG | - | chr8.4:30429169-30429188 | None:intergenic | 65.0% | |
TGCGAGGGTAACTCCCTGGC+TGG | - | chr8.4:30427395-30427414 | None:intergenic | 65.0% | |
! | CCGAAGTCGTGGTGGAGGGT+AGG | + | chr8.4:30427459-30427478 | MS.gene23775:CDS | 65.0% |
! | CGGGTTGACAGTTGGAGCCG+TGG | - | chr8.4:30427423-30427442 | None:intergenic | 65.0% |
GGAGCCGTGGGGGTTTGCGA+GGG | - | chr8.4:30427410-30427429 | None:intergenic | 70.0% | |
TGGAGCCGTGGGGGTTTGCG+AGG | - | chr8.4:30427411-30427430 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 30427224 | 30430061 | 30427224 | ID=MS.gene23775 |
chr8.4 | mRNA | 30427224 | 30430061 | 30427224 | ID=MS.gene23775.t1;Parent=MS.gene23775 |
chr8.4 | exon | 30427224 | 30427682 | 30427224 | ID=MS.gene23775.t1.exon1;Parent=MS.gene23775.t1 |
chr8.4 | CDS | 30427224 | 30427682 | 30427224 | ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1 |
chr8.4 | exon | 30428373 | 30428692 | 30428373 | ID=MS.gene23775.t1.exon2;Parent=MS.gene23775.t1 |
chr8.4 | CDS | 30428373 | 30428692 | 30428373 | ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1 |
chr8.4 | exon | 30429105 | 30429237 | 30429105 | ID=MS.gene23775.t1.exon3;Parent=MS.gene23775.t1 |
chr8.4 | CDS | 30429105 | 30429237 | 30429105 | ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1 |
chr8.4 | exon | 30429783 | 30430061 | 30429783 | ID=MS.gene23775.t1.exon4;Parent=MS.gene23775.t1 |
chr8.4 | CDS | 30429783 | 30430061 | 30429783 | ID=cds.MS.gene23775.t1;Parent=MS.gene23775.t1 |
Gene Sequence |
Protein sequence |