Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23779.t1 | XP_003629179.1 | 89.3 | 356 | 38 | 0 | 22 | 377 | 20 | 375 | 6.30E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23779.t1 | Q9SD05 | 46.9 | 360 | 179 | 7 | 22 | 373 | 11 | 366 | 2.5e-89 | 330.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23779.t1 | G7LA64 | 89.3 | 356 | 38 | 0 | 22 | 377 | 20 | 375 | 4.5e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017556 | MS.gene23779 | PPI |
| MS.gene059296 | MS.gene23779 | PPI |
| MS.gene037812 | MS.gene23779 | PPI |
| MS.gene037810 | MS.gene23779 | PPI |
| MS.gene017555 | MS.gene23779 | PPI |
| MS.gene23779 | MS.gene017554 | PPI |
| MS.gene66625 | MS.gene23779 | PPI |
| MS.gene23780 | MS.gene23779 | PPI |
| MS.gene061292 | MS.gene23779 | PPI |
| MS.gene85273 | MS.gene23779 | PPI |
| MS.gene27212 | MS.gene23779 | PPI |
| MS.gene017554 | MS.gene23779 | PPI |
| MS.gene23775 | MS.gene23779 | PPI |
| MS.gene034366 | MS.gene23779 | PPI |
| MS.gene23776 | MS.gene23779 | PPI |
| MS.gene032181 | MS.gene23779 | PPI |
| MS.gene017558 | MS.gene23779 | PPI |
| MS.gene98728 | MS.gene23779 | PPI |
| MS.gene037809 | MS.gene23779 | PPI |
| MS.gene35719 | MS.gene23779 | PPI |
| MS.gene27210 | MS.gene23779 | PPI |
| MS.gene052008 | MS.gene23779 | PPI |
| MS.gene23779 | MS.gene61630 | PPI |
| MS.gene27211 | MS.gene23779 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23779.t1 | MTR_8g074170 | 88.859 | 377 | 40 | 1 | 1 | 377 | 1 | 375 | 0.0 | 678 |
| MS.gene23779.t1 | MTR_8g074270 | 85.411 | 377 | 53 | 1 | 1 | 377 | 1 | 375 | 0.0 | 651 |
| MS.gene23779.t1 | MTR_8g074210 | 83.024 | 377 | 62 | 1 | 1 | 377 | 1 | 375 | 0.0 | 636 |
| MS.gene23779.t1 | MTR_8g074320 | 55.789 | 190 | 64 | 2 | 58 | 243 | 49 | 222 | 8.31e-66 | 208 |
| MS.gene23779.t1 | MTR_1g075865 | 85.047 | 107 | 16 | 0 | 169 | 275 | 7 | 113 | 2.66e-61 | 194 |
| MS.gene23779.t1 | MTR_2g042370 | 32.479 | 351 | 218 | 10 | 24 | 363 | 10 | 352 | 2.68e-47 | 165 |
| MS.gene23779.t1 | MTR_2g042430 | 31.856 | 361 | 212 | 12 | 24 | 366 | 22 | 366 | 7.55e-47 | 164 |
| MS.gene23779.t1 | MTR_2g042420 | 31.519 | 349 | 220 | 11 | 24 | 363 | 6 | 344 | 9.58e-46 | 160 |
| MS.gene23779.t1 | MTR_4g050190 | 31.053 | 380 | 219 | 9 | 27 | 363 | 7 | 386 | 1.49e-43 | 155 |
| MS.gene23779.t1 | MTR_2g087780 | 31.250 | 384 | 214 | 12 | 27 | 363 | 10 | 390 | 7.15e-40 | 146 |
| MS.gene23779.t1 | MTR_7g090320 | 30.091 | 329 | 189 | 7 | 80 | 367 | 58 | 386 | 5.23e-37 | 138 |
| MS.gene23779.t1 | MTR_7g090310 | 30.000 | 330 | 191 | 7 | 78 | 367 | 56 | 385 | 1.40e-36 | 137 |
| MS.gene23779.t1 | MTR_2g099030 | 30.476 | 315 | 183 | 7 | 23 | 302 | 19 | 332 | 1.13e-34 | 132 |
| MS.gene23779.t1 | MTR_4g112670 | 33.074 | 257 | 148 | 5 | 80 | 312 | 39 | 295 | 6.94e-33 | 125 |
| MS.gene23779.t1 | MTR_7g490330 | 33.716 | 261 | 144 | 8 | 77 | 310 | 44 | 302 | 4.34e-32 | 123 |
| MS.gene23779.t1 | MTR_8g074290 | 54.128 | 109 | 46 | 3 | 245 | 351 | 46 | 152 | 4.54e-32 | 118 |
| MS.gene23779.t1 | MTR_7g090300 | 32.129 | 249 | 148 | 4 | 78 | 305 | 51 | 299 | 2.43e-31 | 122 |
| MS.gene23779.t1 | MTR_7g490350 | 32.743 | 226 | 131 | 4 | 80 | 284 | 53 | 278 | 2.40e-29 | 117 |
| MS.gene23779.t1 | MTR_4g112650 | 33.333 | 234 | 128 | 6 | 80 | 286 | 38 | 270 | 3.17e-28 | 113 |
| MS.gene23779.t1 | MTR_2g058450 | 36.364 | 176 | 108 | 3 | 118 | 289 | 99 | 274 | 5.34e-27 | 110 |
| MS.gene23779.t1 | MTR_4g112630 | 33.761 | 234 | 128 | 7 | 80 | 286 | 38 | 271 | 5.87e-27 | 109 |
| MS.gene23779.t1 | MTR_0003s0530 | 40.458 | 131 | 77 | 1 | 165 | 294 | 2 | 132 | 4.77e-26 | 104 |
| MS.gene23779.t1 | MTR_5g091980 | 31.878 | 229 | 135 | 4 | 80 | 287 | 48 | 276 | 5.21e-25 | 104 |
| MS.gene23779.t1 | MTR_2g058410 | 32.759 | 174 | 105 | 5 | 123 | 288 | 1 | 170 | 1.34e-18 | 84.3 |
| MS.gene23779.t1 | MTR_8g075500 | 78.431 | 51 | 11 | 0 | 94 | 144 | 170 | 220 | 1.43e-18 | 84.0 |
| MS.gene23779.t1 | MTR_4g112840 | 34.862 | 109 | 71 | 0 | 188 | 296 | 54 | 162 | 8.54e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23779.t1 | AT3G51430 | 47.500 | 360 | 177 | 7 | 22 | 373 | 11 | 366 | 3.22e-108 | 322 |
| MS.gene23779.t1 | AT3G51440 | 46.944 | 360 | 179 | 7 | 22 | 373 | 11 | 366 | 6.12e-108 | 322 |
| MS.gene23779.t1 | AT3G51420 | 46.111 | 360 | 182 | 7 | 22 | 373 | 11 | 366 | 1.37e-107 | 320 |
| MS.gene23779.t1 | AT3G51450 | 46.866 | 367 | 180 | 8 | 18 | 373 | 4 | 366 | 4.05e-107 | 319 |
| MS.gene23779.t1 | AT3G51430 | 47.500 | 360 | 175 | 8 | 22 | 373 | 11 | 364 | 9.36e-107 | 318 |
| MS.gene23779.t1 | AT5G22020 | 35.000 | 260 | 158 | 4 | 120 | 368 | 136 | 395 | 9.88e-41 | 148 |
| MS.gene23779.t1 | AT5G22020 | 35.000 | 260 | 158 | 4 | 120 | 368 | 136 | 395 | 9.88e-41 | 148 |
| MS.gene23779.t1 | AT5G22020 | 35.000 | 260 | 158 | 4 | 120 | 368 | 136 | 395 | 9.88e-41 | 148 |
| MS.gene23779.t1 | AT1G08470 | 27.877 | 391 | 233 | 9 | 23 | 368 | 3 | 389 | 2.06e-37 | 139 |
| MS.gene23779.t1 | AT3G59530 | 30.696 | 316 | 173 | 10 | 30 | 302 | 22 | 334 | 9.76e-36 | 135 |
| MS.gene23779.t1 | AT3G59530 | 30.696 | 316 | 173 | 10 | 30 | 302 | 22 | 334 | 9.76e-36 | 135 |
| MS.gene23779.t1 | AT3G59530 | 30.696 | 316 | 173 | 10 | 30 | 302 | 22 | 334 | 9.76e-36 | 135 |
| MS.gene23779.t1 | AT3G57030 | 30.530 | 321 | 179 | 11 | 80 | 363 | 56 | 369 | 6.14e-33 | 127 |
| MS.gene23779.t1 | AT3G57020 | 27.922 | 308 | 196 | 8 | 80 | 367 | 53 | 354 | 2.64e-26 | 108 |
| MS.gene23779.t1 | AT3G57020 | 29.151 | 271 | 167 | 7 | 116 | 367 | 104 | 368 | 6.91e-26 | 107 |
| MS.gene23779.t1 | AT2G41290 | 30.000 | 330 | 180 | 12 | 78 | 363 | 49 | 371 | 1.01e-25 | 107 |
| MS.gene23779.t1 | AT3G57010 | 26.970 | 330 | 199 | 8 | 80 | 374 | 54 | 376 | 3.29e-25 | 105 |
| MS.gene23779.t1 | AT1G74010 | 34.545 | 220 | 121 | 6 | 80 | 277 | 37 | 255 | 9.84e-25 | 103 |
| MS.gene23779.t1 | AT1G74020 | 33.182 | 220 | 125 | 5 | 80 | 277 | 38 | 257 | 2.64e-22 | 97.1 |
| MS.gene23779.t1 | AT2G41300 | 29.817 | 218 | 146 | 5 | 120 | 331 | 133 | 349 | 9.18e-22 | 96.3 |
| MS.gene23779.t1 | AT1G74000 | 37.267 | 161 | 98 | 3 | 120 | 277 | 99 | 259 | 3.17e-20 | 90.9 |
Find 88 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACCAGTTAGTGATAATT+TGG | 0.099221 | 8.4:-30478220 | None:intergenic |
| TTTGTTGTTGTTTAAATTGT+AGG | 0.271192 | 8.4:-30478327 | None:intergenic |
| GTTGCAGAGGGAAAATGTTT+TGG | 0.288224 | 8.4:+30476015 | MS.gene23779:CDS |
| TTCTTATACAAATTCAGATT+TGG | 0.295791 | 8.4:-30478141 | None:intergenic |
| TATTACAAAAGGGTATAAAA+TGG | 0.302630 | 8.4:-30478274 | None:intergenic |
| GCCGCTAAGGCTATAATAAC+TGG | 0.307153 | 8.4:-30475880 | None:intergenic |
| TAGCCTTAGCGGCTCTTTAC+CGG | 0.338250 | 8.4:+30475890 | MS.gene23779:CDS |
| CCATCATAATGAATGTTATC+AGG | 0.354766 | 8.4:-30477696 | None:intergenic |
| GGATCATAGTAGTGTGTAGT+AGG | 0.366734 | 8.4:-30478198 | None:intergenic |
| CCCAGTTATTATAGCCTTAG+CGG | 0.372026 | 8.4:+30475879 | MS.gene23779:CDS |
| TGCTAAAATACCCTTTCATT+AGG | 0.375501 | 8.4:+30478088 | MS.gene23779:CDS |
| GATCCCAAATTATCACTAAC+TGG | 0.383412 | 8.4:+30478216 | MS.gene23779:CDS |
| TGCAAGAAATATTACATAGA+TGG | 0.390150 | 8.4:+30477627 | MS.gene23779:CDS |
| GGTGAGACTGCAACTCCATT+AGG | 0.393741 | 8.4:-30477112 | None:intergenic |
| CTAACTGGTGGGATAAAGAT+TGG | 0.398842 | 8.4:+30478231 | MS.gene23779:CDS |
| AATACACCCATCTTCACAAC+TGG | 0.405409 | 8.4:-30476082 | None:intergenic |
| CCACCAGTTAGTGATAATTT+GGG | 0.407324 | 8.4:-30478219 | None:intergenic |
| GCGTCGTATACCAAATCTTC+AGG | 0.409274 | 8.4:-30476039 | None:intergenic |
| AGGAGTTATCACTGTGGACT+TGG | 0.417990 | 8.4:+30478167 | MS.gene23779:CDS |
| CGGTGGAAGACCACTTGGTT+TGG | 0.418345 | 8.4:+30476152 | MS.gene23779:CDS |
| GGTTTCCTTCGAATACATCT+TGG | 0.418962 | 8.4:-30477018 | None:intergenic |
| GTACTTGTTAATGAGTTTGA+TGG | 0.425273 | 8.4:+30476899 | MS.gene23779:CDS |
| ACGTAAAGGAGCAGTTATAT+AGG | 0.429642 | 8.4:-30475962 | None:intergenic |
| ATGAATCGGTGGTTGAAGAT+TGG | 0.435572 | 8.4:+30476121 | MS.gene23779:CDS |
| TTTGGTATACGACGCTGATA+AGG | 0.436669 | 8.4:+30476047 | MS.gene23779:CDS |
| GTTTAAATTGTAGGTAGAGC+AGG | 0.438638 | 8.4:-30478318 | None:intergenic |
| AGTAGAGGTCACTCACTAGT+AGG | 0.439456 | 8.4:-30477087 | None:intergenic |
| ATCGGGTTAGTTTGTTGAGA+GGG | 0.442413 | 8.4:-30475939 | None:intergenic |
| AGTGACCTCTACTTTCCTAA+TGG | 0.443237 | 8.4:+30477097 | MS.gene23779:CDS |
| ATACGACGCTGATAAGGGTT+TGG | 0.448748 | 8.4:+30476053 | MS.gene23779:CDS |
| TGAATGTTATCAGGCATGCC+AGG | 0.449090 | 8.4:-30477687 | None:intergenic |
| TGAATCGGTGGTTGAAGATT+GGG | 0.450708 | 8.4:+30476122 | MS.gene23779:CDS |
| ATATCAAGACGTATTACAAA+AGG | 0.451664 | 8.4:-30478285 | None:intergenic |
| AATCTGAATTTGTATAAGAA+TGG | 0.461591 | 8.4:+30478144 | MS.gene23779:CDS |
| GGACATGGGCAGTACTTGAT+TGG | 0.462993 | 8.4:+30477717 | MS.gene23779:CDS |
| CCCTTTCATTAGGAAGGCTC+TGG | 0.465331 | 8.4:+30478098 | MS.gene23779:CDS |
| TAAAATTCAAATTAACAGAT+GGG | 0.471020 | 8.4:+30476924 | MS.gene23779:CDS |
| CCTGATAACATTCATTATGA+TGG | 0.474172 | 8.4:+30477696 | MS.gene23779:CDS |
| AAGAATAACGGTGAATGAAT+CGG | 0.484118 | 8.4:+30476107 | MS.gene23779:CDS |
| TTGGTATACGACGCTGATAA+GGG | 0.488468 | 8.4:+30476048 | MS.gene23779:CDS |
| TTGTTGAGAGGGAAATGAAT+CGG | 0.493756 | 8.4:-30475928 | None:intergenic |
| TTAAAATTCAAATTAACAGA+TGG | 0.495758 | 8.4:+30476923 | MS.gene23779:CDS |
| TAACTGGTGGGATAAAGATT+GGG | 0.497109 | 8.4:+30478232 | MS.gene23779:CDS |
| AAAATACCCTTTCATTAGGA+AGG | 0.503520 | 8.4:+30478092 | MS.gene23779:CDS |
| TATGTCCAGTTCAAGAGAAA+AGG | 0.503928 | 8.4:-30478064 | None:intergenic |
| GTTTATACCAGTTGTGAAGA+TGG | 0.506384 | 8.4:+30476075 | MS.gene23779:CDS |
| AGGAGCAGTTATATAGGATC+GGG | 0.511215 | 8.4:-30475956 | None:intergenic |
| TATTGTTGCAGACGCAGATA+AGG | 0.512214 | 8.4:+30476197 | MS.gene23779:CDS |
| GCCAGAGCCTTCCTAATGAA+AGG | 0.517627 | 8.4:-30478099 | None:intergenic |
| AACACCGGTGGAAGACCACT+TGG | 0.523954 | 8.4:+30476147 | MS.gene23779:CDS |
| AAGGAGCAGTTATATAGGAT+CGG | 0.533668 | 8.4:-30475957 | None:intergenic |
| CTGAATTTGTATAAGAATGG+AGG | 0.542134 | 8.4:+30478147 | MS.gene23779:CDS |
| TGGGTGTATTAAAAGAATAA+CGG | 0.542363 | 8.4:+30476095 | MS.gene23779:CDS |
| TATCAAGACGTATTACAAAA+GGG | 0.542456 | 8.4:-30478284 | None:intergenic |
| CCAGAGCCTTCCTAATGAAA+GGG | 0.547179 | 8.4:-30478098 | None:intergenic |
| GTATTCGAAGGAAACCCTAA+TGG | 0.550658 | 8.4:+30477025 | MS.gene23779:CDS |
| AAAATTCAAATTAACAGATG+GGG | 0.555348 | 8.4:+30476925 | MS.gene23779:CDS |
| GGGAAATGAATCGGTTCGAA+TGG | 0.557491 | 8.4:-30475919 | None:intergenic |
| TTTATACCAGTTGTGAAGAT+GGG | 0.558494 | 8.4:+30476076 | MS.gene23779:CDS |
| TAATGGAGTTGCAGTCTCAC+CGG | 0.564848 | 8.4:+30477114 | MS.gene23779:CDS |
| GTTATCACTGTGGACTTGGA+AGG | 0.570869 | 8.4:+30478171 | MS.gene23779:CDS |
| GTAGAGGTCACTCACTAGTA+GGG | 0.571038 | 8.4:-30477086 | None:intergenic |
| CCGCTAAGGCTATAATAACT+GGG | 0.579632 | 8.4:-30475879 | None:intergenic |
| CCAAATTATCACTAACTGGT+GGG | 0.579798 | 8.4:+30478220 | MS.gene23779:CDS |
| GATCGGGTTAGTTTGTTGAG+AGG | 0.581650 | 8.4:-30475940 | None:intergenic |
| GAATGTTATCAGGCATGCCA+GGG | 0.588881 | 8.4:-30477686 | None:intergenic |
| CCCAAATTATCACTAACTGG+TGG | 0.591092 | 8.4:+30478219 | MS.gene23779:CDS |
| CAAACCAAGTGGTCTTCCAC+CGG | 0.592714 | 8.4:-30476151 | None:intergenic |
| AACATTCATTATGATGGACA+TGG | 0.593918 | 8.4:+30477702 | MS.gene23779:CDS |
| TTCGAAGGAAACCCTAATGG+TGG | 0.595331 | 8.4:+30477028 | MS.gene23779:CDS |
| TATCTCCAAGATGTATTCGA+AGG | 0.595440 | 8.4:+30477013 | MS.gene23779:CDS |
| ATTGGGAATCACTTATACTG+TGG | 0.599269 | 8.4:+30478249 | MS.gene23779:CDS |
| GGATCTGAAAACGTTGCAGA+GGG | 0.601697 | 8.4:+30476003 | MS.gene23779:CDS |
| TCGAAGGAAACCCTAATGGT+GGG | 0.601973 | 8.4:+30477029 | MS.gene23779:CDS |
| TTCATCAAAATACTCATACA+AGG | 0.606630 | 8.4:+30476988 | MS.gene23779:CDS |
| GAGCCGGTAAAGAGCCGCTA+AGG | 0.607743 | 8.4:-30475893 | None:intergenic |
| TCGGTTCGAATGGATCGAGC+CGG | 0.630379 | 8.4:-30475909 | None:intergenic |
| AGGATCTGAAAACGTTGCAG+AGG | 0.644663 | 8.4:+30476002 | MS.gene23779:CDS |
| AATAACGGTGAATGAATCGG+TGG | 0.644708 | 8.4:+30476110 | MS.gene23779:CDS |
| GTTGAAGATTGGGTTAACAC+CGG | 0.647511 | 8.4:+30476132 | MS.gene23779:CDS |
| GAAGATTGGGTTAACACCGG+TGG | 0.647988 | 8.4:+30476135 | MS.gene23779:CDS |
| ACATTCATTATGATGGACAT+GGG | 0.648960 | 8.4:+30477703 | MS.gene23779:CDS |
| CAACTCCATTAGGAAAGTAG+AGG | 0.650316 | 8.4:-30477102 | None:intergenic |
| CCATCAAAAGCCAAACCAAG+TGG | 0.660290 | 8.4:-30476162 | None:intergenic |
| GTACTTGATTGGAATAGCCA+CGG | 0.663511 | 8.4:+30477728 | MS.gene23779:CDS |
| GGGGTTGATGTAGCTCATGA+TGG | 0.666426 | 8.4:+30476944 | MS.gene23779:CDS |
| TGTTATCAGGCATGCCAGGG+AGG | 0.693601 | 8.4:-30477683 | None:intergenic |
| GAATGGAGGAGTTATCACTG+TGG | 0.760629 | 8.4:+30478161 | MS.gene23779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAACATGATATATAT+AGG | + | chr8.4:30476661-30476680 | MS.gene23779:intron | 10.0% |
| !! | TATATATATCATGTTTAAAT+TGG | - | chr8.4:30476662-30476681 | None:intergenic | 10.0% |
| !!! | AATTTTAAAGAATTTTATAC+TGG | - | chr8.4:30477205-30477224 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTGTTTTTTA+AGG | + | chr8.4:30476284-30476303 | MS.gene23779:intron | 10.0% |
| !! | AAAAGAATATACAAAAACAT+AGG | - | chr8.4:30476752-30476771 | None:intergenic | 15.0% |
| !! | AATAAGAAATTAATATCCAA+CGG | + | chr8.4:30476426-30476445 | MS.gene23779:intron | 15.0% |
| !! | ATTAATTAATGATATGATAC+AGG | + | chr8.4:30476841-30476860 | MS.gene23779:intron | 15.0% |
| !! | CCAATTTAAACATATTATAT+AGG | + | chr8.4:30476476-30476495 | MS.gene23779:intron | 15.0% |
| !! | CCTATATAATATGTTTAAAT+TGG | - | chr8.4:30476479-30476498 | None:intergenic | 15.0% |
| !! | GTAACATTTAAATAAATGTT+AGG | + | chr8.4:30477497-30477516 | MS.gene23779:intron | 15.0% |
| !! | TAAAATTCAAATTAACAGAT+GGG | + | chr8.4:30476924-30476943 | MS.gene23779:CDS | 15.0% |
| !! | TTAAAATTCAAATTAACAGA+TGG | + | chr8.4:30476923-30476942 | MS.gene23779:CDS | 15.0% |
| !! | TTAATTAATGATATGATACA+GGG | + | chr8.4:30476842-30476861 | MS.gene23779:intron | 15.0% |
| !!! | AAAAAAATATTTTATACCGT+TGG | - | chr8.4:30476445-30476464 | None:intergenic | 15.0% |
| !!! | GTAACTGATTTAAATTTTAT+GGG | + | chr8.4:30477585-30477604 | MS.gene23779:intron | 15.0% |
| !!! | TATTTTAATATGTTTGTTTG+AGG | - | chr8.4:30476410-30476429 | None:intergenic | 15.0% |
| !!! | TGTAACTGATTTAAATTTTA+TGG | + | chr8.4:30477584-30477603 | MS.gene23779:intron | 15.0% |
| !!! | TTTTTAAGGTAAAAAAGTTA+AGG | + | chr8.4:30476298-30476317 | MS.gene23779:intron | 15.0% |
| !! | AAAATTCAAATTAACAGATG+GGG | + | chr8.4:30476925-30476944 | MS.gene23779:CDS | 20.0% |
| !! | AATCTGAATTTGTATAAGAA+TGG | + | chr8.4:30478144-30478163 | MS.gene23779:CDS | 20.0% |
| !! | ATTCTGAACAAAAAAATCAA+TGG | - | chr8.4:30476367-30476386 | None:intergenic | 20.0% |
| !! | GATAATACTATAAAATGTAG+TGG | - | chr8.4:30477548-30477567 | None:intergenic | 20.0% |
| !! | TTCTTATACAAATTCAGATT+TGG | - | chr8.4:30478144-30478163 | None:intergenic | 20.0% |
| !!! | AAATACCTTCTTTTTTTCTA+GGG | - | chr8.4:30476515-30476534 | None:intergenic | 20.0% |
| !!! | AGTAGTTTTGAAATAAATGT+TGG | + | chr8.4:30476222-30476241 | MS.gene23779:intron | 20.0% |
| !!! | TATTACAAAAGGGTATAAAA+TGG | - | chr8.4:30478277-30478296 | None:intergenic | 20.0% |
| ! | AATAAATTTCCATCAAACTG+AGG | + | chr8.4:30477324-30477343 | MS.gene23779:intron | 25.0% |
| ! | ACAAATGTAACATCCAATTT+AGG | + | chr8.4:30477932-30477951 | MS.gene23779:intron | 25.0% |
| ! | ATAAATTTCCATCAAACTGA+GGG | + | chr8.4:30477325-30477344 | MS.gene23779:intron | 25.0% |
| ! | ATACTGGTATATAGTAAACA+AGG | - | chr8.4:30477189-30477208 | None:intergenic | 25.0% |
| ! | ATATCAAGACGTATTACAAA+AGG | - | chr8.4:30478288-30478307 | None:intergenic | 25.0% |
| ! | TATCAAGACGTATTACAAAA+GGG | - | chr8.4:30478287-30478306 | None:intergenic | 25.0% |
| ! | TGCAAGAAATATTACATAGA+TGG | + | chr8.4:30477627-30477646 | MS.gene23779:CDS | 25.0% |
| ! | TGGGTGTATTAAAAGAATAA+CGG | + | chr8.4:30476095-30476114 | MS.gene23779:CDS | 25.0% |
| ! | TGTTATTGTTTGTGTATTTC+TGG | + | chr8.4:30478037-30478056 | MS.gene23779:intron | 25.0% |
| ! | TTCATCAAAATACTCATACA+AGG | + | chr8.4:30476988-30477007 | MS.gene23779:CDS | 25.0% |
| !! | AGAGTGCTAAATATATGTAT+TGG | + | chr8.4:30477996-30478015 | MS.gene23779:intron | 25.0% |
| !! | ATCAATCGACAATCATATTT+TGG | - | chr8.4:30476722-30476741 | None:intergenic | 25.0% |
| !!! | CAAATACCTTCTTTTTTTCT+AGG | - | chr8.4:30476516-30476535 | None:intergenic | 25.0% |
| !!! | GAATATGTTTTTTCTGCAAA+TGG | + | chr8.4:30476249-30476268 | MS.gene23779:intron | 25.0% |
| !!! | TCCAATTTAGGTTTTTTTGA+AGG | + | chr8.4:30477944-30477963 | MS.gene23779:intron | 25.0% |
| AAAATACCCTTTCATTAGGA+AGG | + | chr8.4:30478092-30478111 | MS.gene23779:CDS | 30.0% | |
| AAGAATAACGGTGAATGAAT+CGG | + | chr8.4:30476107-30476126 | MS.gene23779:CDS | 30.0% | |
| ACTTGTCACAATTTAATCCA+AGG | - | chr8.4:30476795-30476814 | None:intergenic | 30.0% | |
| CAAGGAAATAAACAACTTAC+AGG | - | chr8.4:30477171-30477190 | None:intergenic | 30.0% | |
| CCATAAATAGTCTCTATACA+AGG | + | chr8.4:30477967-30477986 | MS.gene23779:intron | 30.0% | |
| CCATCATAATGAATGTTATC+AGG | - | chr8.4:30477699-30477718 | None:intergenic | 30.0% | |
| CCTGATAACATTCATTATGA+TGG | + | chr8.4:30477696-30477715 | MS.gene23779:CDS | 30.0% | |
| CCTTGTATAGAGACTATTTA+TGG | - | chr8.4:30477970-30477989 | None:intergenic | 30.0% | |
| CGTAATAAAAACATGCGATT+AGG | + | chr8.4:30475982-30476001 | MS.gene23779:CDS | 30.0% | |
| CTGAATTTGTATAAGAATGG+AGG | + | chr8.4:30478147-30478166 | MS.gene23779:CDS | 30.0% | |
| GATATCCCTAGAAAAAAAGA+AGG | + | chr8.4:30476507-30476526 | MS.gene23779:intron | 30.0% | |
| GCCTTCAAAAAAACCTAAAT+TGG | - | chr8.4:30477948-30477967 | None:intergenic | 30.0% | |
| TAAATTTCCATCAAACTGAG+GGG | + | chr8.4:30477326-30477345 | MS.gene23779:intron | 30.0% | |
| TGCATACTTCTAAATGTTGT+TGG | + | chr8.4:30477386-30477405 | MS.gene23779:intron | 30.0% | |
| TGCTAAAATACCCTTTCATT+AGG | + | chr8.4:30478088-30478107 | MS.gene23779:CDS | 30.0% | |
| TTTATACCAGTTGTGAAGAT+GGG | + | chr8.4:30476076-30476095 | MS.gene23779:CDS | 30.0% | |
| ! | GGTGTGCTTTATTGAAAATT+GGG | + | chr8.4:30477347-30477366 | MS.gene23779:intron | 30.0% |
| ! | GTACTTGTTAATGAGTTTGA+TGG | + | chr8.4:30476899-30476918 | MS.gene23779:CDS | 30.0% |
| ! | TTAGAAGTATGCAAGTAACA+TGG | - | chr8.4:30477379-30477398 | None:intergenic | 30.0% |
| ! | TTTTCTGTGCTTCCTTTTTT+TGG | - | chr8.4:30477654-30477673 | None:intergenic | 30.0% |
| !! | AACATTCATTATGATGGACA+TGG | + | chr8.4:30477702-30477721 | MS.gene23779:CDS | 30.0% |
| !! | AAGACCACAAAATTTTGATC+CGG | - | chr8.4:30477136-30477155 | None:intergenic | 30.0% |
| !! | ACATTCATTATGATGGACAT+GGG | + | chr8.4:30477703-30477722 | MS.gene23779:CDS | 30.0% |
| !! | CGCATGTTTTTATTACGTAA+AGG | - | chr8.4:30475979-30475998 | None:intergenic | 30.0% |
| !!! | ATTTTGGCTAATCATACATG+AGG | - | chr8.4:30476706-30476725 | None:intergenic | 30.0% |
| !!! | TTTCTGTGCTTCCTTTTTTT+GGG | - | chr8.4:30477653-30477672 | None:intergenic | 30.0% |
| AACTCAAAAACCCACCATTA+GGG | - | chr8.4:30477042-30477061 | None:intergenic | 35.0% | |
| AAGATTAATCTCTGCAGTTG+TGG | + | chr8.4:30477851-30477870 | MS.gene23779:intron | 35.0% | |
| AAGGAGCAGTTATATAGGAT+CGG | - | chr8.4:30475960-30475979 | None:intergenic | 35.0% | |
| ACGTAAAGGAGCAGTTATAT+AGG | - | chr8.4:30475965-30475984 | None:intergenic | 35.0% | |
| AGATAAACCGAAACAAATCC+TGG | - | chr8.4:30476335-30476354 | None:intergenic | 35.0% | |
| AGATTAATCTCTGCAGTTGT+GGG | + | chr8.4:30477852-30477871 | MS.gene23779:intron | 35.0% | |
| ATTGGGAATCACTTATACTG+TGG | + | chr8.4:30478249-30478268 | MS.gene23779:CDS | 35.0% | |
| CCAAATTATCACTAACTGGT+GGG | + | chr8.4:30478220-30478239 | MS.gene23779:CDS | 35.0% | |
| CCACCAGTTAGTGATAATTT+GGG | - | chr8.4:30478222-30478241 | None:intergenic | 35.0% | |
| GATAAACCGAAACAAATCCT+GGG | - | chr8.4:30476334-30476353 | None:intergenic | 35.0% | |
| GATCCCAAATTATCACTAAC+TGG | + | chr8.4:30478216-30478235 | MS.gene23779:CDS | 35.0% | |
| GTTTATACCAGTTGTGAAGA+TGG | + | chr8.4:30476075-30476094 | MS.gene23779:CDS | 35.0% | |
| TAACTCAAAAACCCACCATT+AGG | - | chr8.4:30477043-30477062 | None:intergenic | 35.0% | |
| TAACTGGTGGGATAAAGATT+GGG | + | chr8.4:30478232-30478251 | MS.gene23779:CDS | 35.0% | |
| TACATAGATGGCCCAAAAAA+AGG | + | chr8.4:30477639-30477658 | MS.gene23779:CDS | 35.0% | |
| TATCTCCAAGATGTATTCGA+AGG | + | chr8.4:30477013-30477032 | MS.gene23779:CDS | 35.0% | |
| TATGTCCAGTTCAAGAGAAA+AGG | - | chr8.4:30478067-30478086 | None:intergenic | 35.0% | |
| TCTCTCGTGTTAAAAATCCT+TGG | + | chr8.4:30476775-30476794 | MS.gene23779:intron | 35.0% | |
| TTGTTGAGAGGGAAATGAAT+CGG | - | chr8.4:30475931-30475950 | None:intergenic | 35.0% | |
| ! | GGGTGTGCTTTATTGAAAAT+TGG | + | chr8.4:30477346-30477365 | MS.gene23779:intron | 35.0% |
| !! | ATGTTTTGGACCTGAAGATT+TGG | + | chr8.4:30476029-30476048 | MS.gene23779:CDS | 35.0% |
| !! | ATTGTTTGTGTATTTCTGGC+AGG | + | chr8.4:30478041-30478060 | MS.gene23779:intron | 35.0% |
| !! | ATTTTATGGGCTAATGTTGC+AGG | + | chr8.4:30477598-30477617 | MS.gene23779:intron | 35.0% |
| !!! | AGGGTTGTCTTTTTTGTTGA+TGG | - | chr8.4:30477070-30477089 | None:intergenic | 35.0% |
| !!! | TAGAGTTTTGTTGTTCCTTG+TGG | + | chr8.4:30477813-30477832 | MS.gene23779:intron | 35.0% |
| !!! | TGAGTATTTTGATGAAGCGA+CGG | - | chr8.4:30476984-30477003 | None:intergenic | 35.0% |
| AATAACGGTGAATGAATCGG+TGG | + | chr8.4:30476110-30476129 | MS.gene23779:CDS | 40.0% | |
| AATACACCCATCTTCACAAC+TGG | - | chr8.4:30476085-30476104 | None:intergenic | 40.0% | |
| AGGAGCAGTTATATAGGATC+GGG | - | chr8.4:30475959-30475978 | None:intergenic | 40.0% | |
| AGTGACATCAAATGATACCG+TGG | - | chr8.4:30477748-30477767 | None:intergenic | 40.0% | |
| AGTGACCTCTACTTTCCTAA+TGG | + | chr8.4:30477097-30477116 | MS.gene23779:CDS | 40.0% | |
| ATGAATCGGTGGTTGAAGAT+TGG | + | chr8.4:30476121-30476140 | MS.gene23779:CDS | 40.0% | |
| CAACTCCATTAGGAAAGTAG+AGG | - | chr8.4:30477105-30477124 | None:intergenic | 40.0% | |
| CCCAAATTATCACTAACTGG+TGG | + | chr8.4:30478219-30478238 | MS.gene23779:CDS | 40.0% | |
| CCCACCAGTTAGTGATAATT+TGG | - | chr8.4:30478223-30478242 | None:intergenic | 40.0% | |
| CCGCTAAGGCTATAATAACT+GGG | - | chr8.4:30475882-30475901 | None:intergenic | 40.0% | |
| CTAACTGGTGGGATAAAGAT+TGG | + | chr8.4:30478231-30478250 | MS.gene23779:CDS | 40.0% | |
| GGATCATAGTAGTGTGTAGT+AGG | - | chr8.4:30478201-30478220 | None:intergenic | 40.0% | |
| GGTTTCCTTCGAATACATCT+TGG | - | chr8.4:30477021-30477040 | None:intergenic | 40.0% | |
| GTACTTGATTGGAATAGCCA+CGG | + | chr8.4:30477728-30477747 | MS.gene23779:CDS | 40.0% | |
| GTATTCGAAGGAAACCCTAA+TGG | + | chr8.4:30477025-30477044 | MS.gene23779:CDS | 40.0% | |
| GTTAAGGTAATTACTGTCCC+AGG | + | chr8.4:30476314-30476333 | MS.gene23779:intron | 40.0% | |
| GTTGAAGATTGGGTTAACAC+CGG | + | chr8.4:30476132-30476151 | MS.gene23779:CDS | 40.0% | |
| TATTGTTGCAGACGCAGATA+AGG | + | chr8.4:30476197-30476216 | MS.gene23779:CDS | 40.0% | |
| TGAATCGGTGGTTGAAGATT+GGG | + | chr8.4:30476122-30476141 | MS.gene23779:CDS | 40.0% | |
| TTGGTATACGACGCTGATAA+GGG | + | chr8.4:30476048-30476067 | MS.gene23779:CDS | 40.0% | |
| TTTGGTATACGACGCTGATA+AGG | + | chr8.4:30476047-30476066 | MS.gene23779:CDS | 40.0% | |
| ! | ACCGACTCAAACACACAAAA+GGG | + | chr8.4:30477883-30477902 | MS.gene23779:intron | 40.0% |
| ! | CCCAGTTATTATAGCCTTAG+CGG | + | chr8.4:30475879-30475898 | MS.gene23779:CDS | 40.0% |
| ! | CTCACCGGATCAAAATTTTG+TGG | + | chr8.4:30477129-30477148 | MS.gene23779:CDS | 40.0% |
| ! | GTTGCAGAGGGAAAATGTTT+TGG | + | chr8.4:30476015-30476034 | MS.gene23779:CDS | 40.0% |
| ! | TACTGTCCCAGGATTTGTTT+CGG | + | chr8.4:30476325-30476344 | MS.gene23779:intron | 40.0% |
| ! | TCCCTTTTGTGTGTTTGAGT+CGG | - | chr8.4:30477887-30477906 | None:intergenic | 40.0% |
| !! | ATCGGGTTAGTTTGTTGAGA+GGG | - | chr8.4:30475942-30475961 | None:intergenic | 40.0% |
| !! | TACCGACTCAAACACACAAA+AGG | + | chr8.4:30477882-30477901 | MS.gene23779:intron | 40.0% |
| !!! | GGTTTGGCTTTTGATGGAAA+TGG | + | chr8.4:30476168-30476187 | MS.gene23779:CDS | 40.0% |
| AGGAGTTATCACTGTGGACT+TGG | + | chr8.4:30478167-30478186 | MS.gene23779:CDS | 45.0% | |
| AGGATCTGAAAACGTTGCAG+AGG | + | chr8.4:30476002-30476021 | MS.gene23779:CDS | 45.0% | |
| AGTAGAGGTCACTCACTAGT+AGG | - | chr8.4:30477090-30477109 | None:intergenic | 45.0% | |
| ATACGACGCTGATAAGGGTT+TGG | + | chr8.4:30476053-30476072 | MS.gene23779:CDS | 45.0% | |
| CCAGAGCCTTCCTAATGAAA+GGG | - | chr8.4:30478101-30478120 | None:intergenic | 45.0% | |
| CCATCAAAAGCCAAACCAAG+TGG | - | chr8.4:30476165-30476184 | None:intergenic | 45.0% | |
| GAATGGAGGAGTTATCACTG+TGG | + | chr8.4:30478161-30478180 | MS.gene23779:CDS | 45.0% | |
| GAATGTTATCAGGCATGCCA+GGG | - | chr8.4:30477689-30477708 | None:intergenic | 45.0% | |
| GCCGCTAAGGCTATAATAAC+TGG | - | chr8.4:30475883-30475902 | None:intergenic | 45.0% | |
| GCGTCGTATACCAAATCTTC+AGG | - | chr8.4:30476042-30476061 | None:intergenic | 45.0% | |
| GGATCTGAAAACGTTGCAGA+GGG | + | chr8.4:30476003-30476022 | MS.gene23779:CDS | 45.0% | |
| GTAGAGGTCACTCACTAGTA+GGG | - | chr8.4:30477089-30477108 | None:intergenic | 45.0% | |
| GTTATCACTGTGGACTTGGA+AGG | + | chr8.4:30478171-30478190 | MS.gene23779:CDS | 45.0% | |
| TAATGGAGTTGCAGTCTCAC+CGG | + | chr8.4:30477114-30477133 | MS.gene23779:CDS | 45.0% | |
| TCGAAGGAAACCCTAATGGT+GGG | + | chr8.4:30477029-30477048 | MS.gene23779:CDS | 45.0% | |
| TCGAGTCGAATATCACCACA+AGG | - | chr8.4:30477831-30477850 | None:intergenic | 45.0% | |
| TGAATGTTATCAGGCATGCC+AGG | - | chr8.4:30477690-30477709 | None:intergenic | 45.0% | |
| TTCGAAGGAAACCCTAATGG+TGG | + | chr8.4:30477028-30477047 | MS.gene23779:CDS | 45.0% | |
| !! | GAAAAGTTTTGTGACCTCCC+TGG | + | chr8.4:30477669-30477688 | MS.gene23779:CDS | 45.0% |
| !! | GATCGGGTTAGTTTGTTGAG+AGG | - | chr8.4:30475943-30475962 | None:intergenic | 45.0% |
| !! | GGGAAATGAATCGGTTCGAA+TGG | - | chr8.4:30475922-30475941 | None:intergenic | 45.0% |
| !!! | CCACTTGGTTTGGCTTTTGA+TGG | + | chr8.4:30476162-30476181 | MS.gene23779:CDS | 45.0% |
| AAGCACACCCCTCAGTTTGA+TGG | - | chr8.4:30477336-30477355 | None:intergenic | 50.0% | |
| CAAACCAAGTGGTCTTCCAC+CGG | - | chr8.4:30476154-30476173 | None:intergenic | 50.0% | |
| CCCTTTCATTAGGAAGGCTC+TGG | + | chr8.4:30478098-30478117 | MS.gene23779:CDS | 50.0% | |
| GAAGATTGGGTTAACACCGG+TGG | + | chr8.4:30476135-30476154 | MS.gene23779:CDS | 50.0% | |
| GCCAGAGCCTTCCTAATGAA+AGG | - | chr8.4:30478102-30478121 | None:intergenic | 50.0% | |
| GGACATGGGCAGTACTTGAT+TGG | + | chr8.4:30477717-30477736 | MS.gene23779:CDS | 50.0% | |
| GGTGAGACTGCAACTCCATT+AGG | - | chr8.4:30477115-30477134 | None:intergenic | 50.0% | |
| ! | GCAGGCCTTTTCTCTTGAAC+TGG | + | chr8.4:30478059-30478078 | MS.gene23779:intron | 50.0% |
| ! | TAGCCTTAGCGGCTCTTTAC+CGG | + | chr8.4:30475890-30475909 | MS.gene23779:CDS | 50.0% |
| !! | GGGGTTGATGTAGCTCATGA+TGG | + | chr8.4:30476944-30476963 | MS.gene23779:CDS | 50.0% |
| AACACCGGTGGAAGACCACT+TGG | + | chr8.4:30476147-30476166 | MS.gene23779:CDS | 55.0% | |
| CGGTGGAAGACCACTTGGTT+TGG | + | chr8.4:30476152-30476171 | MS.gene23779:CDS | 55.0% | |
| TGTTATCAGGCATGCCAGGG+AGG | - | chr8.4:30477686-30477705 | None:intergenic | 55.0% | |
| ! | TCGGTTCGAATGGATCGAGC+CGG | - | chr8.4:30475912-30475931 | None:intergenic | 55.0% |
| GAGCCGGTAAAGAGCCGCTA+AGG | - | chr8.4:30475896-30475915 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 30475799 | 30478338 | 30475799 | ID=MS.gene23779 |
| chr8.4 | mRNA | 30475799 | 30478338 | 30475799 | ID=MS.gene23779.t1;Parent=MS.gene23779 |
| chr8.4 | exon | 30475799 | 30476218 | 30475799 | ID=MS.gene23779.t1.exon1;Parent=MS.gene23779.t1 |
| chr8.4 | CDS | 30475799 | 30476218 | 30475799 | ID=cds.MS.gene23779.t1;Parent=MS.gene23779.t1 |
| chr8.4 | exon | 30476863 | 30477170 | 30476863 | ID=MS.gene23779.t1.exon2;Parent=MS.gene23779.t1 |
| chr8.4 | CDS | 30476863 | 30477170 | 30476863 | ID=cds.MS.gene23779.t1;Parent=MS.gene23779.t1 |
| chr8.4 | exon | 30477620 | 30477749 | 30477620 | ID=MS.gene23779.t1.exon3;Parent=MS.gene23779.t1 |
| chr8.4 | CDS | 30477620 | 30477749 | 30477620 | ID=cds.MS.gene23779.t1;Parent=MS.gene23779.t1 |
| chr8.4 | exon | 30478063 | 30478338 | 30478063 | ID=MS.gene23779.t1.exon4;Parent=MS.gene23779.t1 |
| chr8.4 | CDS | 30478063 | 30478338 | 30478063 | ID=cds.MS.gene23779.t1;Parent=MS.gene23779.t1 |
| Gene Sequence |
| Protein sequence |
