Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017556.t1 | XP_003629186.1 | 93.2 | 237 | 16 | 0 | 1 | 237 | 139 | 375 | 5.40E-126 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017556.t1 | Q9CAZ7 | 50.4 | 236 | 111 | 4 | 1 | 233 | 134 | 366 | 1.3e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017556.t1 | G7LA71 | 93.2 | 237 | 16 | 0 | 1 | 237 | 139 | 375 | 3.9e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66625 | MS.gene017556 | PPI |
| MS.gene017556 | MS.gene27210 | PPI |
| MS.gene017556 | MS.gene23779 | PPI |
| MS.gene017556 | MS.gene85273 | PPI |
| MS.gene017556 | MS.gene61630 | PPI |
| MS.gene017556 | MS.gene037812 | PPI |
| MS.gene017556 | MS.gene017558 | PPI |
| MS.gene017558 | MS.gene017556 | PPI |
| MS.gene017556 | MS.gene032181 | PPI |
| MS.gene052008 | MS.gene017556 | PPI |
| MS.gene27212 | MS.gene017556 | PPI |
| MS.gene23776 | MS.gene017556 | PPI |
| MS.gene017556 | MS.gene017554 | PPI |
| MS.gene037809 | MS.gene017556 | PPI |
| MS.gene037810 | MS.gene017556 | PPI |
| MS.gene017556 | MS.gene98728 | PPI |
| MS.gene017556 | MS.gene061292 | PPI |
| MS.gene017556 | MS.gene23775 | PPI |
| MS.gene017556 | MS.gene034366 | PPI |
| MS.gene017556 | MS.gene27211 | PPI |
| MS.gene059296 | MS.gene017556 | PPI |
| MS.gene017556 | MS.gene23780 | PPI |
| MS.gene017556 | MS.gene35719 | PPI |
| MS.gene017556 | MS.gene017555 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017556.t1 | MTR_8g074270 | 93.249 | 237 | 16 | 0 | 1 | 237 | 139 | 375 | 2.09e-163 | 456 |
| MS.gene017556.t1 | MTR_8g074210 | 89.451 | 237 | 25 | 0 | 1 | 237 | 139 | 375 | 9.07e-157 | 440 |
| MS.gene017556.t1 | MTR_8g074170 | 89.451 | 237 | 25 | 0 | 1 | 237 | 139 | 375 | 9.44e-156 | 437 |
| MS.gene017556.t1 | MTR_1g075865 | 95.327 | 107 | 5 | 0 | 29 | 135 | 7 | 113 | 8.61e-73 | 218 |
| MS.gene017556.t1 | MTR_8g074320 | 63.551 | 107 | 35 | 1 | 1 | 103 | 116 | 222 | 6.76e-42 | 142 |
| MS.gene017556.t1 | MTR_2g042370 | 32.751 | 229 | 148 | 3 | 1 | 223 | 124 | 352 | 3.10e-39 | 139 |
| MS.gene017556.t1 | MTR_2g042430 | 33.190 | 232 | 148 | 4 | 1 | 226 | 136 | 366 | 4.65e-39 | 139 |
| MS.gene017556.t1 | MTR_2g042420 | 32.314 | 229 | 148 | 5 | 1 | 223 | 117 | 344 | 1.74e-36 | 132 |
| MS.gene017556.t1 | MTR_4g050190 | 32.618 | 233 | 147 | 3 | 1 | 223 | 154 | 386 | 3.70e-36 | 132 |
| MS.gene017556.t1 | MTR_8g074290 | 53.211 | 109 | 47 | 3 | 105 | 211 | 46 | 152 | 2.62e-34 | 120 |
| MS.gene017556.t1 | MTR_2g099030 | 33.679 | 193 | 113 | 2 | 14 | 191 | 184 | 376 | 3.43e-33 | 124 |
| MS.gene017556.t1 | MTR_7g090320 | 32.599 | 227 | 142 | 4 | 12 | 227 | 160 | 386 | 5.52e-33 | 123 |
| MS.gene017556.t1 | MTR_2g087780 | 32.618 | 233 | 147 | 4 | 1 | 223 | 158 | 390 | 1.67e-32 | 122 |
| MS.gene017556.t1 | MTR_7g090300 | 32.000 | 225 | 131 | 6 | 14 | 223 | 147 | 364 | 2.56e-32 | 121 |
| MS.gene017556.t1 | MTR_7g090310 | 32.599 | 227 | 142 | 4 | 12 | 227 | 159 | 385 | 2.88e-32 | 121 |
| MS.gene017556.t1 | MTR_7g490330 | 37.654 | 162 | 96 | 3 | 14 | 170 | 141 | 302 | 4.77e-31 | 117 |
| MS.gene017556.t1 | MTR_7g490350 | 31.111 | 225 | 133 | 5 | 14 | 223 | 147 | 364 | 2.89e-30 | 115 |
| MS.gene017556.t1 | MTR_5g091980 | 38.519 | 135 | 82 | 1 | 14 | 147 | 142 | 276 | 2.43e-27 | 107 |
| MS.gene017556.t1 | MTR_0003s0530 | 39.231 | 130 | 78 | 1 | 26 | 154 | 3 | 132 | 1.69e-25 | 99.4 |
| MS.gene017556.t1 | MTR_4g112670 | 35.897 | 156 | 98 | 2 | 1 | 154 | 122 | 277 | 1.87e-24 | 99.8 |
| MS.gene017556.t1 | MTR_4g112650 | 41.129 | 124 | 70 | 2 | 26 | 146 | 147 | 270 | 1.19e-23 | 97.4 |
| MS.gene017556.t1 | MTR_4g112630 | 39.200 | 125 | 72 | 2 | 26 | 146 | 147 | 271 | 6.36e-22 | 92.4 |
| MS.gene017556.t1 | MTR_2g058450 | 33.094 | 139 | 92 | 1 | 12 | 149 | 136 | 274 | 2.37e-21 | 91.3 |
| MS.gene017556.t1 | MTR_2g058410 | 33.333 | 138 | 88 | 3 | 14 | 148 | 34 | 170 | 4.21e-20 | 85.9 |
| MS.gene017556.t1 | MTR_4g112840 | 37.000 | 100 | 63 | 0 | 57 | 156 | 63 | 162 | 6.95e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017556.t1 | AT3G51430 | 50.424 | 236 | 111 | 4 | 1 | 233 | 134 | 366 | 7.10e-79 | 242 |
| MS.gene017556.t1 | AT3G51430 | 50.424 | 236 | 109 | 5 | 1 | 233 | 134 | 364 | 3.70e-77 | 237 |
| MS.gene017556.t1 | AT3G51450 | 49.153 | 236 | 114 | 4 | 1 | 233 | 134 | 366 | 2.35e-75 | 233 |
| MS.gene017556.t1 | AT3G51440 | 48.305 | 236 | 116 | 4 | 1 | 233 | 134 | 366 | 3.91e-75 | 232 |
| MS.gene017556.t1 | AT3G51420 | 47.881 | 236 | 117 | 4 | 1 | 233 | 134 | 366 | 1.27e-72 | 226 |
| MS.gene017556.t1 | AT5G22020 | 32.773 | 238 | 150 | 3 | 1 | 228 | 158 | 395 | 2.53e-37 | 135 |
| MS.gene017556.t1 | AT5G22020 | 32.773 | 238 | 150 | 3 | 1 | 228 | 158 | 395 | 2.53e-37 | 135 |
| MS.gene017556.t1 | AT5G22020 | 32.773 | 238 | 150 | 3 | 1 | 228 | 158 | 395 | 2.53e-37 | 135 |
| MS.gene017556.t1 | AT3G59530 | 37.576 | 165 | 102 | 1 | 1 | 164 | 172 | 336 | 2.26e-36 | 132 |
| MS.gene017556.t1 | AT3G59530 | 37.576 | 165 | 102 | 1 | 1 | 164 | 172 | 336 | 2.26e-36 | 132 |
| MS.gene017556.t1 | AT3G59530 | 37.576 | 165 | 102 | 1 | 1 | 164 | 172 | 336 | 2.26e-36 | 132 |
| MS.gene017556.t1 | AT1G08470 | 31.933 | 238 | 152 | 3 | 1 | 228 | 152 | 389 | 1.41e-35 | 130 |
| MS.gene017556.t1 | AT3G57030 | 31.304 | 230 | 128 | 8 | 14 | 223 | 150 | 369 | 7.85e-31 | 117 |
| MS.gene017556.t1 | AT3G57020 | 28.163 | 245 | 152 | 6 | 1 | 227 | 116 | 354 | 1.76e-25 | 102 |
| MS.gene017556.t1 | AT3G57020 | 28.163 | 245 | 152 | 6 | 1 | 227 | 130 | 368 | 2.66e-25 | 102 |
| MS.gene017556.t1 | AT2G41300 | 31.522 | 184 | 121 | 3 | 12 | 191 | 167 | 349 | 1.92e-24 | 100 |
| MS.gene017556.t1 | AT3G57010 | 28.063 | 253 | 156 | 6 | 1 | 234 | 131 | 376 | 8.47e-24 | 98.6 |
| MS.gene017556.t1 | AT1G74010 | 38.931 | 131 | 78 | 2 | 14 | 142 | 131 | 261 | 2.92e-21 | 90.9 |
| MS.gene017556.t1 | AT2G41290 | 28.745 | 247 | 145 | 9 | 1 | 223 | 132 | 371 | 1.85e-20 | 89.4 |
| MS.gene017556.t1 | AT1G74020 | 30.455 | 220 | 127 | 7 | 14 | 230 | 133 | 329 | 4.13e-20 | 87.8 |
| MS.gene017556.t1 | AT1G74000 | 32.704 | 159 | 103 | 3 | 14 | 168 | 135 | 293 | 6.11e-18 | 81.6 |
Find 52 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAGTGGTCAATGAAAATT+TGG | 0.096368 | 8.3:+28730416 | None:intergenic |
| AGAATCCTTGACTGAGTATT+TGG | 0.217246 | 8.3:+28731825 | None:intergenic |
| TTTGTTGTTGTTTAAATTGT+AGG | 0.271192 | 8.3:+28730309 | None:intergenic |
| CCCTTTCATTAGGAAGGTTC+TGG | 0.311857 | 8.3:-28730538 | MS.gene017556:CDS |
| TATGACAAAAGGGTATAAAA+TGG | 0.328459 | 8.3:+28730362 | None:intergenic |
| TAGCTCAGAAATCTACCATT+AGG | 0.351349 | 8.3:+28731778 | None:intergenic |
| TTGACCACTGGGATTAAGAT+TGG | 0.354361 | 8.3:-28730405 | MS.gene017556:CDS |
| CCATCATAATGAATGTTATC+AGG | 0.354766 | 8.3:+28731134 | None:intergenic |
| TTGAGCATTATGTCCAGTTC+AGG | 0.364269 | 8.3:+28730564 | None:intergenic |
| GGATCATAGTAATGTGTTGT+AGG | 0.364483 | 8.3:+28730438 | None:intergenic |
| GTTTGCCTTCTAATATATCT+AGG | 0.365632 | 8.3:+28731800 | None:intergenic |
| TGCTCAAATACCCTTTCATT+AGG | 0.379431 | 8.3:-28730548 | MS.gene017556:CDS |
| GGTGAGACTGCAACTCCATT+AGG | 0.393741 | 8.3:+28731706 | None:intergenic |
| GTTTAAATTGTAGGTAGAGC+AGG | 0.438638 | 8.3:+28730318 | None:intergenic |
| AGTAGAGGTCACTCACTAGT+AGG | 0.439456 | 8.3:+28731731 | None:intergenic |
| ATGTCAAGACGTATGACAAA+AGG | 0.440499 | 8.3:+28730351 | None:intergenic |
| AGTGACCTCTACTTTCCTAA+TGG | 0.443237 | 8.3:-28731721 | MS.gene017556:CDS |
| ATGATGGACATGGGCAGTAC+TGG | 0.444773 | 8.3:-28731118 | MS.gene017556:CDS |
| TGAATGTTATCAGGCATGCC+AGG | 0.449090 | 8.3:+28731143 | None:intergenic |
| TGACCACTGGGATTAAGATT+GGG | 0.462512 | 8.3:-28730404 | MS.gene017556:CDS |
| AGGAGTTATCACTGTGGACT+TGG | 0.473224 | 8.3:-28730469 | MS.gene017556:CDS |
| CCTGATAACATTCATTATGA+TGG | 0.474172 | 8.3:-28731134 | MS.gene017556:CDS |
| CAAATACCCTTTCATTAGGA+AGG | 0.478049 | 8.3:-28730544 | MS.gene017556:CDS |
| GCCAGAACCTTCCTAATGAA+AGG | 0.497938 | 8.3:+28730537 | None:intergenic |
| CCAGTGGTCAATGAAAATTT+GGG | 0.505659 | 8.3:+28730417 | None:intergenic |
| CTAAAATTCAAAATAACAGA+TGG | 0.507319 | 8.3:-28731895 | MS.gene017556:CDS |
| GGACATGGGCAGTACTGGAT+TGG | 0.509242 | 8.3:-28731113 | MS.gene017556:CDS |
| TCTGTCCTAGATATATTAGA+AGG | 0.514052 | 8.3:-28731805 | MS.gene017556:CDS |
| ATATTAGAAGGCAAACCTAA+TGG | 0.516846 | 8.3:-28731793 | MS.gene017556:CDS |
| CCAGAACCTTCCTAATGAAA+GGG | 0.523065 | 8.3:+28730538 | None:intergenic |
| TAAAATTCAAAATAACAGAT+GGG | 0.527376 | 8.3:-28731894 | MS.gene017556:CDS |
| TGTCAAGACGTATGACAAAA+GGG | 0.530568 | 8.3:+28730352 | None:intergenic |
| GTACTTGTGACTGAGATTGA+TGG | 0.533589 | 8.3:-28731919 | MS.gene017556:CDS |
| AGTCTGAATTTGTCAAAGAA+CGG | 0.559155 | 8.3:-28730492 | MS.gene017556:CDS |
| TAATGGAGTTGCAGTCTCAC+CGG | 0.564848 | 8.3:-28731704 | MS.gene017556:CDS |
| GTTATCACTGTGGACTTGGA+AGG | 0.570869 | 8.3:-28730465 | MS.gene017556:CDS |
| GTAGAGGTCACTCACTAGTA+GGG | 0.571038 | 8.3:+28731732 | None:intergenic |
| ATTGGGAATCACATGTATTG+TGG | 0.573834 | 8.3:-28730387 | MS.gene017556:CDS |
| TGCAAGAAATATTACATACA+TGG | 0.578745 | 8.3:-28731203 | MS.gene017556:CDS |
| GAATGTTATCAGGCATGCCA+GGG | 0.588881 | 8.3:+28731144 | None:intergenic |
| AACATTCATTATGATGGACA+TGG | 0.593918 | 8.3:-28731128 | MS.gene017556:CDS |
| TTCATCCAAATACTCAGTCA+AGG | 0.615952 | 8.3:-28731830 | MS.gene017556:CDS |
| AAAATTCAAAATAACAGATG+GGG | 0.624283 | 8.3:-28731893 | MS.gene017556:CDS |
| TGAGTATTTGGATGAAGCGT+CGG | 0.648482 | 8.3:+28731837 | None:intergenic |
| ACATTCATTATGATGGACAT+GGG | 0.648960 | 8.3:-28731127 | MS.gene017556:CDS |
| CAACTCCATTAGGAAAGTAG+AGG | 0.650316 | 8.3:+28731716 | None:intergenic |
| CTGAATTTGTCAAAGAACGG+AGG | 0.657045 | 8.3:-28730489 | MS.gene017556:CDS |
| GGGGTTGATGTAGCACATGA+TGG | 0.659959 | 8.3:-28731874 | MS.gene017556:CDS |
| GTACTGGATTGGAATAGCCA+CGG | 0.683691 | 8.3:-28731102 | MS.gene017556:intron |
| TGTTATCAGGCATGCCAGGG+AGG | 0.693601 | 8.3:+28731147 | None:intergenic |
| ATTCCCAATCTTAATCCCAG+TGG | 0.699708 | 8.3:+28730401 | None:intergenic |
| GAACGGAGGAGTTATCACTG+TGG | 0.783679 | 8.3:-28730475 | MS.gene017556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTCAAAATAACAGAT+GGG | - | chr8.3:28730381-28730400 | MS.gene017556:CDS | 15.0% |
| !!! | TGGACTTATTTTTATTTTAT+GGG | - | chr8.3:28731030-28731049 | MS.gene017556:intron | 15.0% |
| !!! | TTGGACTTATTTTTATTTTA+TGG | - | chr8.3:28731029-28731048 | MS.gene017556:intron | 15.0% |
| !! | AAAATTCAAAATAACAGATG+GGG | - | chr8.3:28730382-28730401 | MS.gene017556:CDS | 20.0% |
| !! | AATAAATTTCCATCAAACTA+AGG | - | chr8.3:28730767-28730786 | MS.gene017556:intron | 20.0% |
| !! | ATAAATTTCCATCAAACTAA+GGG | - | chr8.3:28730768-28730787 | MS.gene017556:intron | 20.0% |
| !! | CTAAAATTCAAAATAACAGA+TGG | - | chr8.3:28730380-28730399 | MS.gene017556:CDS | 20.0% |
| !! | TATATAATCGAAACTACATA+GGG | + | chr8.3:28730882-28730901 | None:intergenic | 20.0% |
| !! | TTATATAATCGAAACTACAT+AGG | + | chr8.3:28730883-28730902 | None:intergenic | 20.0% |
| !!! | AAAAGTGCTAATTATATGTT+GGG | - | chr8.3:28731436-28731455 | MS.gene017556:intron | 20.0% |
| !!! | AACGTGTTTTTTAAGTTTTA+TGG | + | chr8.3:28730925-28730944 | None:intergenic | 20.0% |
| !!! | ACGTGTTTTTTAAGTTTTAT+GGG | + | chr8.3:28730924-28730943 | None:intergenic | 20.0% |
| !!! | CATCTGTTATTTTGAATTTT+AGG | + | chr8.3:28730382-28730401 | None:intergenic | 20.0% |
| ! | AAAAATGTGACATCCAATTT+AGG | - | chr8.3:28731382-28731401 | MS.gene017556:intron | 25.0% |
| ! | AGATTAATCTCTACAATTGT+GGG | - | chr8.3:28731298-28731317 | MS.gene017556:intron | 25.0% |
| ! | ATGAGTTACCAATACATATA+AGG | + | chr8.3:28731643-28731662 | None:intergenic | 25.0% |
| ! | TAAATTTCCATCAAACTAAG+GGG | - | chr8.3:28730769-28730788 | MS.gene017556:intron | 25.0% |
| ! | TGAGTTACCAATACATATAA+GGG | + | chr8.3:28731642-28731661 | None:intergenic | 25.0% |
| ! | TGCAAGAAATATTACATACA+TGG | - | chr8.3:28731072-28731091 | MS.gene017556:intron | 25.0% |
| ! | TGTAGTTTCGATTATATAAC+CGG | - | chr8.3:28730884-28730903 | MS.gene017556:intron | 25.0% |
| !! | CTTTTATACTTGTACTAACA+AGG | + | chr8.3:28730646-28730665 | None:intergenic | 25.0% |
| !! | TATGACAAAAGGGTATAAAA+TGG | + | chr8.3:28731916-28731935 | None:intergenic | 25.0% |
| !! | TTTTCTGTTCATTGTACAAA+TGG | + | chr8.3:28731420-28731439 | None:intergenic | 25.0% |
| !!! | AATTGGATGTCACATTTTTT+TGG | + | chr8.3:28731381-28731400 | None:intergenic | 25.0% |
| !!! | CAGATTTTAGAATTCGAATA+GGG | - | chr8.3:28730954-28730973 | MS.gene017556:intron | 25.0% |
| !!! | CGTGTTTTTTAAGTTTTATG+GGG | + | chr8.3:28730923-28730942 | None:intergenic | 25.0% |
| !!! | GAAAAGTGCTAATTATATGT+TGG | - | chr8.3:28731435-28731454 | MS.gene017556:intron | 25.0% |
| !!! | TCAGATTTTAGAATTCGAAT+AGG | - | chr8.3:28730953-28730972 | MS.gene017556:intron | 25.0% |
| !!! | TCCAATTTAGGTTTTTCTTA+AGG | - | chr8.3:28731394-28731413 | MS.gene017556:intron | 25.0% |
| AAGGTGATAAACAACTTACA+TGG | + | chr8.3:28730627-28730646 | None:intergenic | 30.0% | |
| AGCATTTCCCTTATATGTAT+TGG | - | chr8.3:28731632-28731651 | MS.gene017556:intron | 30.0% | |
| AGTCTGAATTTGTCAAAGAA+CGG | - | chr8.3:28731783-28731802 | MS.gene017556:CDS | 30.0% | |
| ATATTAGAAGGCAAACCTAA+TGG | - | chr8.3:28730482-28730501 | MS.gene017556:CDS | 30.0% | |
| ATGCTAACATGTGTCTATAA+AGG | + | chr8.3:28731617-28731636 | None:intergenic | 30.0% | |
| CCATCATAATGAATGTTATC+AGG | + | chr8.3:28731144-28731163 | None:intergenic | 30.0% | |
| CCTGATAACATTCATTATGA+TGG | - | chr8.3:28731141-28731160 | MS.gene017556:CDS | 30.0% | |
| GACCTACTTCTAAATGTTAT+TGG | - | chr8.3:28731010-28731029 | MS.gene017556:intron | 30.0% | |
| GAGATTAATCTCTACAATTG+TGG | - | chr8.3:28731297-28731316 | MS.gene017556:intron | 30.0% | |
| GCCTTAAGAAAAACCTAAAT+TGG | + | chr8.3:28731398-28731417 | None:intergenic | 30.0% | |
| GTCCAATAACATTTAGAAGT+AGG | + | chr8.3:28731015-28731034 | None:intergenic | 30.0% | |
| GTTTGCCTTCTAATATATCT+AGG | + | chr8.3:28730478-28730497 | None:intergenic | 30.0% | |
| TCTGTCCTAGATATATTAGA+AGG | - | chr8.3:28730470-28730489 | MS.gene017556:CDS | 30.0% | |
| ! | ATTTTATGGGATAATGTTGC+AGG | - | chr8.3:28731043-28731062 | MS.gene017556:intron | 30.0% |
| ! | GGTGTGCTTTATTGAAATTT+GGG | - | chr8.3:28730790-28730809 | MS.gene017556:intron | 30.0% |
| ! | TTAGAAGTATGCAAGTAACA+TGG | + | chr8.3:28730822-28730841 | None:intergenic | 30.0% |
| ! | TTTTCTGTGCTACCTTTTTT+TGG | + | chr8.3:28731099-28731118 | None:intergenic | 30.0% |
| !! | AACATTCATTATGATGGACA+TGG | - | chr8.3:28731147-28731166 | MS.gene017556:CDS | 30.0% |
| !! | AAGACGACAAAATTTTGATC+CGG | + | chr8.3:28730593-28730612 | None:intergenic | 30.0% |
| !! | ACATTCATTATGATGGACAT+GGG | - | chr8.3:28731148-28731167 | MS.gene017556:CDS | 30.0% |
| !!! | TTTCTGTGCTACCTTTTTTT+GGG | + | chr8.3:28731098-28731117 | None:intergenic | 30.0% |
| AGAATCCTTGACTGAGTATT+TGG | + | chr8.3:28730453-28730472 | None:intergenic | 35.0% | |
| ATGTCAAGACGTATGACAAA+AGG | + | chr8.3:28731927-28731946 | None:intergenic | 35.0% | |
| ATTGGGAATCACATGTATTG+TGG | - | chr8.3:28731888-28731907 | MS.gene017556:CDS | 35.0% | |
| CAAATACCCTTTCATTAGGA+AGG | - | chr8.3:28731731-28731750 | MS.gene017556:CDS | 35.0% | |
| CCAGTGGTCAATGAAAATTT+GGG | + | chr8.3:28731861-28731880 | None:intergenic | 35.0% | |
| GGATCATAGTAATGTGTTGT+AGG | + | chr8.3:28731840-28731859 | None:intergenic | 35.0% | |
| GTGATAAACAACTTACATGG+AGG | + | chr8.3:28730624-28730643 | None:intergenic | 35.0% | |
| GTTTGTGTATTTCTTCTGTC+AGG | - | chr8.3:28731680-28731699 | MS.gene017556:CDS | 35.0% | |
| TACATACATGGCCCAAAAAA+AGG | - | chr8.3:28731084-28731103 | MS.gene017556:intron | 35.0% | |
| TAGCTCAGAAATCTACCATT+AGG | + | chr8.3:28730500-28730519 | None:intergenic | 35.0% | |
| TGCTCAAATACCCTTTCATT+AGG | - | chr8.3:28731727-28731746 | MS.gene017556:CDS | 35.0% | |
| TGTCAAGACGTATGACAAAA+GGG | + | chr8.3:28731926-28731945 | None:intergenic | 35.0% | |
| TTCACTTAGAGCACATGTTA+AGG | - | chr8.3:28731472-28731491 | MS.gene017556:intron | 35.0% | |
| TTCATCCAAATACTCAGTCA+AGG | - | chr8.3:28730445-28730464 | MS.gene017556:CDS | 35.0% | |
| ! | CCAAATTTTCATTGACCACT+GGG | - | chr8.3:28731859-28731878 | MS.gene017556:CDS | 35.0% |
| ! | GGGTGTGCTTTATTGAAATT+TGG | - | chr8.3:28730789-28730808 | MS.gene017556:intron | 35.0% |
| !!! | AGGGTTGTCTTTTTTGTTGA+TGG | + | chr8.3:28730527-28730546 | None:intergenic | 35.0% |
| AGTGACATCAAATGATACCG+TGG | + | chr8.3:28731193-28731212 | None:intergenic | 40.0% | |
| AGTGACCTCTACTTTCCTAA+TGG | - | chr8.3:28730554-28730573 | MS.gene017556:CDS | 40.0% | |
| ATTCCCAATCTTAATCCCAG+TGG | + | chr8.3:28731877-28731896 | None:intergenic | 40.0% | |
| CAACTCCATTAGGAAAGTAG+AGG | + | chr8.3:28730562-28730581 | None:intergenic | 40.0% | |
| CCAGAACCTTCCTAATGAAA+GGG | + | chr8.3:28731740-28731759 | None:intergenic | 40.0% | |
| CCCAGTGGTCAATGAAAATT+TGG | + | chr8.3:28731862-28731881 | None:intergenic | 40.0% | |
| CCTGCTCTACCTACAATTTA+AGG | - | chr8.3:28731957-28731976 | MS.gene017556:CDS | 40.0% | |
| CTGAATTTGTCAAAGAACGG+AGG | - | chr8.3:28731786-28731805 | MS.gene017556:CDS | 40.0% | |
| GTACTTGTGACTGAGATTGA+TGG | - | chr8.3:28730356-28730375 | MS.gene017556:CDS | 40.0% | |
| TCACACACACACACACAAAA+GGG | - | chr8.3:28731335-28731354 | MS.gene017556:intron | 40.0% | |
| TGACCACTGGGATTAAGATT+GGG | - | chr8.3:28731871-28731890 | MS.gene017556:CDS | 40.0% | |
| TGAGTATTTGGATGAAGCGT+CGG | + | chr8.3:28730441-28730460 | None:intergenic | 40.0% | |
| TTCACACACACACACACAAA+AGG | - | chr8.3:28731334-28731353 | MS.gene017556:intron | 40.0% | |
| TTGACCACTGGGATTAAGAT+TGG | - | chr8.3:28731870-28731889 | MS.gene017556:CDS | 40.0% | |
| TTGAGCATTATGTCCAGTTC+AGG | + | chr8.3:28731714-28731733 | None:intergenic | 40.0% | |
| TTGTGTGTGTGTGTGTGAAT+TGG | + | chr8.3:28731333-28731352 | None:intergenic | 40.0% | |
| ! | CCCAAATTTTCATTGACCAC+TGG | - | chr8.3:28731858-28731877 | MS.gene017556:CDS | 40.0% |
| AGGAGTTATCACTGTGGACT+TGG | - | chr8.3:28731806-28731825 | MS.gene017556:CDS | 45.0% | |
| AGTAGAGGTCACTCACTAGT+AGG | + | chr8.3:28730547-28730566 | None:intergenic | 45.0% | |
| CCCTTTCATTAGGAAGGTTC+TGG | - | chr8.3:28731737-28731756 | MS.gene017556:CDS | 45.0% | |
| GAATGTTATCAGGCATGCCA+GGG | + | chr8.3:28731134-28731153 | None:intergenic | 45.0% | |
| GCCAGAACCTTCCTAATGAA+AGG | + | chr8.3:28731741-28731760 | None:intergenic | 45.0% | |
| GTAGAGGTCACTCACTAGTA+GGG | + | chr8.3:28730546-28730565 | None:intergenic | 45.0% | |
| GTGCGAGAAACTCATAGGAT+GGG | - | chr8.3:28730978-28730997 | MS.gene017556:intron | 45.0% | |
| GTTATCACTGTGGACTTGGA+AGG | - | chr8.3:28731810-28731829 | MS.gene017556:CDS | 45.0% | |
| TAATGGAGTTGCAGTCTCAC+CGG | - | chr8.3:28730571-28730590 | MS.gene017556:CDS | 45.0% | |
| TGAATGTTATCAGGCATGCC+AGG | + | chr8.3:28731135-28731154 | None:intergenic | 45.0% | |
| ! | AAGCACACCCCTTAGTTTGA+TGG | + | chr8.3:28730779-28730798 | None:intergenic | 45.0% |
| ! | ATGGGGTGTTCATACTGTTC+CGG | + | chr8.3:28730906-28730925 | None:intergenic | 45.0% |
| ! | GTACTGGATTGGAATAGCCA+CGG | - | chr8.3:28731173-28731192 | MS.gene017556:CDS | 45.0% |
| ! | TCAGGCATTTTCTCCTGAAC+TGG | - | chr8.3:28731698-28731717 | MS.gene017556:CDS | 45.0% |
| !! | GAAAAGTTTTGTGACCTCCC+TGG | - | chr8.3:28731114-28731133 | MS.gene017556:CDS | 45.0% |
| CGTGCGAGAAACTCATAGGA+TGG | - | chr8.3:28730977-28730996 | MS.gene017556:intron | 50.0% | |
| GAACGGAGGAGTTATCACTG+TGG | - | chr8.3:28731800-28731819 | MS.gene017556:CDS | 50.0% | |
| GGTGAGACTGCAACTCCATT+AGG | + | chr8.3:28730572-28730591 | None:intergenic | 50.0% | |
| !! | ATGATGGACATGGGCAGTAC+TGG | - | chr8.3:28731157-28731176 | MS.gene017556:CDS | 50.0% |
| !! | GGGGTTGATGTAGCACATGA+TGG | - | chr8.3:28730401-28730420 | MS.gene017556:CDS | 50.0% |
| AGGGCGTGCGAGAAACTCAT+AGG | - | chr8.3:28730973-28730992 | MS.gene017556:intron | 55.0% | |
| TGTTATCAGGCATGCCAGGG+AGG | + | chr8.3:28731131-28731150 | None:intergenic | 55.0% | |
| ! | GGACATGGGCAGTACTGGAT+TGG | - | chr8.3:28731162-28731181 | MS.gene017556:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28730320 | 28731977 | 28730320 | ID=MS.gene017556 |
| chr8.3 | mRNA | 28730320 | 28731977 | 28730320 | ID=MS.gene017556.t1;Parent=MS.gene017556 |
| chr8.3 | exon | 28731670 | 28731977 | 28731670 | ID=MS.gene017556.t1.exon1;Parent=MS.gene017556.t1 |
| chr8.3 | CDS | 28731670 | 28731977 | 28731670 | ID=cds.MS.gene017556.t1;Parent=MS.gene017556.t1 |
| chr8.3 | exon | 28731103 | 28731232 | 28731103 | ID=MS.gene017556.t1.exon2;Parent=MS.gene017556.t1 |
| chr8.3 | CDS | 28731103 | 28731232 | 28731103 | ID=cds.MS.gene017556.t1;Parent=MS.gene017556.t1 |
| chr8.3 | exon | 28730320 | 28730595 | 28730320 | ID=MS.gene017556.t1.exon3;Parent=MS.gene017556.t1 |
| chr8.3 | CDS | 28730320 | 28730595 | 28730320 | ID=cds.MS.gene017556.t1;Parent=MS.gene017556.t1 |
| Gene Sequence |
| Protein sequence |
