AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035574.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035574.01.T01 MTR_6g084450 100.000 232 0 0 1 232 1 232 9.00e-175 479
MsG0680035574.01.T01 MTR_4g060540 91.810 232 19 0 1 232 1 232 6.23e-165 454
MsG0680035574.01.T02 MTR_6g084450 100.000 232 0 0 1 232 1 232 9.00e-175 479
MsG0680035574.01.T02 MTR_4g060540 91.810 232 19 0 1 232 1 232 6.23e-165 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035574.01.T01 AT1G56450 83.700 227 37 0 6 232 20 246 4.30e-148 412
MsG0680035574.01.T02 AT1G56450 83.700 227 37 0 6 232 20 246 4.30e-148 412

Find 34 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCATTTGTTTGCTTTGA+TGG 0.199574 6:-108645552 MsG0680035574.01.T01:five_prime_UTR
ACACACACACATGATAATTA+TGG 0.204723 6:+108645829 None:intergenic
GACAACATAGCTTAAATATA+TGG 0.240640 6:-108645151 MsG0680035574.01.T01:five_prime_UTR
TACATTACGTGTTAACTATA+AGG 0.258509 6:-108645450 MsG0680035574.01.T01:five_prime_UTR
ATAGAATCCCTTGCAAATAA+AGG 0.349694 6:+108645676 None:intergenic
TGTAGGCTGTCTATCCAAAA+AGG 0.376188 6:-108645853 MsG0680035574.01.T01:five_prime_UTR
ACAACATAGCTTAAATATAT+GGG 0.392128 6:-108645150 MsG0680035574.01.T01:five_prime_UTR
CACACACACATGATAATTAT+GGG 0.395457 6:+108645830 None:intergenic
TTAGGTTAAGGAACAAGAAA+AGG 0.414960 6:+108647426 None:intergenic
GTGCAATATTGCACATGTTA+AGG 0.423807 6:+108644985 None:intergenic
AGAATACATACAGAGTTCTC+TGG 0.424755 6:+108644839 None:intergenic
TTCTATTTAAGTTTGATGAA+TGG 0.435629 6:-108645659 MsG0680035574.01.T01:five_prime_UTR
ATCACGAACTCTCCGATTCA+AGG 0.441934 6:-108647370 MsG0680035574.01.T02:intron
TGCATTGTGCATAAAATCCT+AGG 0.452649 6:+108645754 None:intergenic
TTAAAGTAGCAACTTTGACT+TGG 0.494632 6:-108645089 MsG0680035574.01.T01:five_prime_UTR
TGTGTGTTTCCGTTTGCAAA+GGG 0.505504 6:+108645216 None:intergenic
GATGCAATACCCTTTGCAAA+CGG 0.512169 6:-108645225 MsG0680035574.01.T01:five_prime_UTR
CAACTAATTATGAGTACCTA+AGG 0.512389 6:+108644899 None:intergenic
TGAATCCTTCGTCGTTGTGA+TGG 0.519215 6:-108644878 MsG0680035574.01.T01:exon
GGAGGAAGAATACCTTGAAT+CGG 0.526180 6:+108647358 None:intergenic
TTGTGTGTTTCCGTTTGCAA+AGG 0.530938 6:+108645215 None:intergenic
AAGATTTGAGTCATACATGC+CGG 0.543443 6:+108645495 None:intergenic
AGATTTGAGTCATACATGCC+GGG 0.548316 6:+108645496 None:intergenic
CTGTGCGTTACAACATACCA+TGG 0.563929 6:+108645356 None:intergenic
GAATACATACAGAGTTCTCT+GGG 0.564352 6:+108644840 None:intergenic
TAAGCTTATGCATAAGCTGT+AGG 0.566680 6:-108645870 MsG0680035574.01.T01:five_prime_UTR
GCATTGTGCATAAAATCCTA+GGG 0.568117 6:+108645755 None:intergenic
TGTTTCATTTATATATAACC+CGG 0.583136 6:-108645514 MsG0680035574.01.T01:five_prime_UTR
CTAGCACAATACAAACAAGA+AGG 0.610599 6:+108645784 None:intergenic
AAAAGGAATAAAGATGACAA+AGG 0.641574 6:+108647443 None:intergenic
ATTGTGCTAGAACAGCCCCT+AGG 0.649598 6:-108645771 MsG0680035574.01.T01:five_prime_UTR
TGTGCGTTACAACATACCAT+GGG 0.671479 6:+108645357 None:intergenic
AGTGTCCATCACAACGACGA+AGG 0.686041 6:+108644873 None:intergenic
CATTGTGCATAAAATCCTAG+GGG 0.742859 6:+108645756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAATAAAATAACTTA+TGG + Chr6:108642493-108642512 None:intergenic 10.0%
!! AAATGAGCAATTATATATTT+AGG + Chr6:108643959-108643978 None:intergenic 15.0%
!! AGTACATATAAATTGTATAT+AGG - Chr6:108642811-108642830 MsG0680035574.01.T01:intron 15.0%
!! CAAAATTAATTAAATATGGA+AGG + Chr6:108646094-108646113 None:intergenic 15.0%
!! GTACATATAAATTGTATATA+GGG - Chr6:108642812-108642831 MsG0680035574.01.T01:intron 15.0%
!! TTGAAAGATAATGTAAAATA+TGG + Chr6:108645741-108645760 None:intergenic 15.0%
!!! ATAAAATACATTTGAAATGA+AGG + Chr6:108644449-108644468 None:intergenic 15.0%
!!! ATTTATGAATATTTTTCCTT+TGG + Chr6:108645709-108645728 None:intergenic 15.0%
!!! CTTCCATATTTAATTAATTT+TGG - Chr6:108646092-108646111 MsG0680035574.01.T02:intron 15.0%
!!! GTTTTTGAATAAATATTTGT+TGG - Chr6:108643867-108643886 MsG0680035574.01.T01:intron 15.0%
!!! TCTCTAGAAAAAAAAAAAAA+AGG - Chr6:108641438-108641457 MsG0680035574.01.T01:three_prime_UTR 15.0%
!!! TTTATGAATATTTTTCCTTT+GGG + Chr6:108645708-108645727 None:intergenic 15.0%
!! AAAGAAAAAAAAGGAAAAGT+TGG + Chr6:108643656-108643675 None:intergenic 20.0%
!! AACAAATCATCATTAAGTTT+AGG + Chr6:108646981-108647000 None:intergenic 20.0%
!! AAGAAAAAAAAGGAAAAGTT+GGG + Chr6:108643655-108643674 None:intergenic 20.0%
!! AAGAACATTAATAATTGAAG+AGG + Chr6:108644103-108644122 None:intergenic 20.0%
!! ACAAATCATCATTAAGTTTA+GGG + Chr6:108646980-108646999 None:intergenic 20.0%
!! ACAACATAGCTTAAATATAT+GGG - Chr6:108643755-108643774 MsG0680035574.01.T01:CDS 20.0%
!! AGAAAACATATATAGAATGA+AGG + Chr6:108646507-108646526 None:intergenic 20.0%
!! AGAACATTAATAATTGAAGA+GGG + Chr6:108644102-108644121 None:intergenic 20.0%
!! AGTAAATTCAGGATTTATAT+AGG - Chr6:108646382-108646401 MsG0680035574.01.T02:intron 20.0%
!! ATTAAAGCTGATAGAAATTT+AGG - Chr6:108642373-108642392 MsG0680035574.01.T01:intron 20.0%
!! ATTAATTAAATATGGAAGGA+AGG + Chr6:108646090-108646109 None:intergenic 20.0%
!! CAAATAAGTGAAGTAAAAAT+GGG - Chr6:108644891-108644910 MsG0680035574.01.T01:five_prime_UTR 20.0%
!! CAGCCAAAATTAATTAAATA+TGG + Chr6:108646098-108646117 None:intergenic 20.0%
!! TCAAATAAGTGAAGTAAAAA+TGG - Chr6:108644890-108644909 MsG0680035574.01.T01:five_prime_UTR 20.0%
!! TGTTTCATTTATATATAACC+CGG - Chr6:108643391-108643410 MsG0680035574.01.T01:intron 20.0%
!! TTATACATTTAAGAATTGTG+TGG - Chr6:108645927-108645946 MsG0680035574.01.T01:five_prime_UTR 20.0%
!! TTCATTAAGAATATCAATTC+CGG + Chr6:108642178-108642197 None:intergenic 20.0%
!!! AAAGTTATTTGAGATAGAAA+GGG - Chr6:108646352-108646371 MsG0680035574.01.T02:intron 20.0%
!!! AAATGAAACAGAATTTTACA+TGG - Chr6:108647241-108647260 MsG0680035574.01.T02:intron 20.0%
!!! AAGTTTGAAATTTATGTCTA+GGG - Chr6:108642200-108642219 MsG0680035574.01.T01:intron 20.0%
!!! AATTTTTATTTCACATCCTT+AGG - Chr6:108643990-108644009 MsG0680035574.01.T01:intron 20.0%
!!! AATTTTTTCCTTTATTTGCA+AGG - Chr6:108643221-108643240 MsG0680035574.01.T01:intron 20.0%
!!! AGTTGTAATATTTAAAGTCA+AGG + Chr6:108645016-108645035 None:intergenic 20.0%
!!! ATGAAATTGAAACTTTTACA+CGG + Chr6:108646847-108646866 None:intergenic 20.0%
!!! ATTTATATAGGTTGATTTGT+CGG - Chr6:108646394-108646413 MsG0680035574.01.T02:intron 20.0%
!!! ATTTTTTCCTTTATTTGCAA+GGG - Chr6:108643222-108643241 MsG0680035574.01.T01:intron 20.0%
!!! CATATTTAATTAATTTTGGC+TGG - Chr6:108646096-108646115 MsG0680035574.01.T02:intron 20.0%
!!! CTTTTTTCTTAAAAAGTTAC+AGG + Chr6:108644514-108644533 None:intergenic 20.0%
!!! GTTGTAATATTTAAAGTCAA+GGG + Chr6:108645015-108645034 None:intergenic 20.0%
!!! TGATTATTTTGGATTATGAA+TGG - Chr6:108645777-108645796 MsG0680035574.01.T01:five_prime_UTR 20.0%
!!! TGTTTGAAATGTAGATAAAT+AGG + Chr6:108644964-108644983 None:intergenic 20.0%
!!! TTCTATTTAAGTTTGATGAA+TGG - Chr6:108643246-108643265 MsG0680035574.01.T01:intron 20.0%
!!! TTTTCCTTTTTTTTCTTTCT+TGG - Chr6:108643658-108643677 MsG0680035574.01.T01:intron 20.0%
! AAAAGGAATAAAGATGACAA+AGG + Chr6:108641465-108641484 None:intergenic 25.0%
! AAACACAACAAACAAAAATC+AGG + Chr6:108645293-108645312 None:intergenic 25.0%
! AAACTTCGATAAGTTGTAAA+TGG + Chr6:108645576-108645595 None:intergenic 25.0%
! AAAGAAGTAAAAACTGAACA+GGG - Chr6:108646307-108646326 MsG0680035574.01.T02:intron 25.0%
! AACTTCGATAAGTTGTAAAT+GGG + Chr6:108645575-108645594 None:intergenic 25.0%
! AATGGGTGTGATTAATTAAA+TGG - Chr6:108644908-108644927 MsG0680035574.01.T01:five_prime_UTR 25.0%
! AATTATCTTTCCTTCTATTG+TGG - Chr6:108644410-108644429 MsG0680035574.01.T01:intron 25.0%
! ACTTATTTGAACTTATCTAC+TGG - Chr6:108642848-108642867 MsG0680035574.01.T01:intron 25.0%
! AGGATGTGAAATAAAAATTC+AGG + Chr6:108643989-108644008 None:intergenic 25.0%
! GACAACATAGCTTAAATATA+TGG - Chr6:108643754-108643773 MsG0680035574.01.T01:CDS 25.0%
! GATAATCAAACATTTGCAAT+TGG + Chr6:108641851-108641870 None:intergenic 25.0%
! GGATGTGAAATAAAAATTCA+GGG + Chr6:108643988-108644007 None:intergenic 25.0%
! GGATGTTATAATAAGAATGA+GGG + Chr6:108641660-108641679 None:intergenic 25.0%
! GTGTAAAAGTTTCAATTTCA+TGG - Chr6:108646846-108646865 MsG0680035574.01.T02:intron 25.0%
! TAATTTGAGTAATGCGATAA+TGG - Chr6:108641735-108641754 MsG0680035574.01.T01:CDS 25.0%
! TACATTACGTGTTAACTATA+AGG - Chr6:108643455-108643474 MsG0680035574.01.T01:CDS 25.0%
! TATGAACATTCTGTATTCAT+AGG - Chr6:108642095-108642114 MsG0680035574.01.T01:intron 25.0%
! TCATTAAGAATATCAATTCC+GGG + Chr6:108642177-108642196 None:intergenic 25.0%
! TCCAATGTAGATTATGAAAA+TGG + Chr6:108642045-108642064 None:intergenic 25.0%
! TGCAAACAATTCAAGAAAAA+AGG + Chr6:108647432-108647451 None:intergenic 25.0%
! TGGATGTTATAATAAGAATG+AGG + Chr6:108641661-108641680 None:intergenic 25.0%
! TTAGTATTCCAAATCATTCA+TGG + Chr6:108646618-108646637 None:intergenic 25.0%
! TTATCATTTGTTTGCTTTGA+TGG - Chr6:108643353-108643372 MsG0680035574.01.T01:intron 25.0%
! TTCTAACCGAAAAATTAATG+TGG + Chr6:108645890-108645909 None:intergenic 25.0%
! TTCTATCCATCAATTATCAT+TGG + Chr6:108644664-108644683 None:intergenic 25.0%
! TTGAAGTGAAATCATTTGTA+TGG - Chr6:108645950-108645969 MsG0680035574.01.T01:five_prime_UTR 25.0%
!! ATATCTAAAATTACCGAAGA+AGG - Chr6:108647110-108647129 MsG0680035574.01.T02:intron 25.0%
!! ATTCTCTTTGAAAACATACT+GGG - Chr6:108647151-108647170 MsG0680035574.01.T02:intron 25.0%
!! ATTTTCAGTAACATTCATCA+TGG - Chr6:108647399-108647418 MsG0680035574.01.T02:five_prime_UTR 25.0%
!! CAAGTTTGAAATTTATGTCT+AGG - Chr6:108642199-108642218 MsG0680035574.01.T01:intron 25.0%
!! CTTATGATTTTGTTAGGTTA+AGG + Chr6:108641494-108641513 None:intergenic 25.0%
!! GAAAGTTATTTGAGATAGAA+AGG - Chr6:108646351-108646370 MsG0680035574.01.T02:intron 25.0%
!! TGTGATCAAAAGAATGTTTT+GGG - Chr6:108642318-108642337 MsG0680035574.01.T01:intron 25.0%
!! TTATACATAAGTGCTTTGTT+TGG - Chr6:108642598-108642617 MsG0680035574.01.T01:intron 25.0%
!! TTGTGATCAAAAGAATGTTT+TGG - Chr6:108642317-108642336 MsG0680035574.01.T01:intron 25.0%
!! TTTTCTTAAAAAGTTACAGG+AGG + Chr6:108644511-108644530 None:intergenic 25.0%
!!! AAACTATAAGCTGTTTTCAT+AGG + Chr6:108642699-108642718 None:intergenic 25.0%
!!! AAAGTGCTTATGATTTTGTT+AGG + Chr6:108641500-108641519 None:intergenic 25.0%
!!! ATAAATGTTGTTTCCTTACA+AGG - Chr6:108644544-108644563 MsG0680035574.01.T01:intron 25.0%
!!! ATTAAACCATGTTTTAACAG+AGG + Chr6:108643504-108643523 None:intergenic 25.0%
!!! ATTTTGAAGTTAAATGAGAC+TGG - Chr6:108647311-108647330 MsG0680035574.01.T02:intron 25.0%
!!! GCTGTTTTTATAAGCTATAT+TGG + Chr6:108642954-108642973 None:intergenic 25.0%
!!! GTGTAGTTTTAAGTATGATT+GGG - Chr6:108643095-108643114 MsG0680035574.01.T01:intron 25.0%
!!! GTTATCGATTTTTCATATGA+AGG - Chr6:108641874-108641893 MsG0680035574.01.T01:intron 25.0%
!!! GTTCTTTTGATTCAAGTTTA+AGG - Chr6:108644117-108644136 MsG0680035574.01.T01:CDS 25.0%
!!! TAAATGTTGTTTCCTTACAA+GGG - Chr6:108644545-108644564 MsG0680035574.01.T01:intron 25.0%
!!! TATACATAAGTGCTTTGTTT+GGG - Chr6:108642599-108642618 MsG0680035574.01.T01:intron 25.0%
!!! TGCTCAAGTTTTGATTATTT+TGG - Chr6:108645766-108645785 MsG0680035574.01.T01:five_prime_UTR 25.0%
!!! TGTAGTTTTAAGTATGATTG+GGG - Chr6:108643096-108643115 MsG0680035574.01.T01:intron 25.0%
!!! TGTGTAGTTTTAAGTATGAT+TGG - Chr6:108643094-108643113 MsG0680035574.01.T01:intron 25.0%
!!! TTTTTTCCTCTGTTAAAACA+TGG - Chr6:108643495-108643514 MsG0680035574.01.T01:CDS 25.0%
!!! TTTTTTTTTTTCTAGAGACG+AGG + Chr6:108641436-108641455 None:intergenic 25.0%
AACAAGTAAAATGAAGCTGA+TGG + Chr6:108644938-108644957 None:intergenic 30.0%
AACTAATTCACAGGTTCATA+TGG - Chr6:108644686-108644705 MsG0680035574.01.T01:CDS 30.0%
AAGAAGTAAAAACTGAACAG+GGG - Chr6:108646308-108646327 MsG0680035574.01.T02:intron 30.0%
AAGCATTTCTTAAGACTGTT+TGG + Chr6:108642126-108642145 None:intergenic 30.0%
AATAAGAATGAGGGTTTATC+AGG + Chr6:108641651-108641670 None:intergenic 30.0%
AATTGTATATAGGGTCTGTT+TGG - Chr6:108642821-108642840 MsG0680035574.01.T01:intron 30.0%
ACAACAAACAAAAATCAGGA+AGG + Chr6:108645289-108645308 None:intergenic 30.0%
ACAACACTGAATAGTTATGT+TGG + Chr6:108647270-108647289 None:intergenic 30.0%
ACACACACACATGATAATTA+TGG + Chr6:108643079-108643098 None:intergenic 30.0%
ACAGTCTTAAGAAATGCTTA+TGG - Chr6:108642127-108642146 MsG0680035574.01.T01:intron 30.0%
ACATTAATAATTGAAGAGGG+AGG + Chr6:108644099-108644118 None:intergenic 30.0%
ACGAGAGTAAATGTCAAAAT+TGG - Chr6:108646248-108646267 MsG0680035574.01.T02:intron 30.0%
ACTTCGATAAGTTGTAAATG+GGG + Chr6:108645574-108645593 None:intergenic 30.0%
AGCATTTCTTAAGACTGTTT+GGG + Chr6:108642125-108642144 None:intergenic 30.0%
AGGGAGAAAATAGTAAATTC+AGG - Chr6:108646371-108646390 MsG0680035574.01.T02:intron 30.0%
ATAGAAATTTAGGCTCTGTT+TGG - Chr6:108642383-108642402 MsG0680035574.01.T01:intron 30.0%
ATAGAATCCCTTGCAAATAA+AGG + Chr6:108643232-108643251 None:intergenic 30.0%
ATTAAATATGGAAGGAAGGT+AGG + Chr6:108646086-108646105 None:intergenic 30.0%
CAAAATCTAACCACAATAGA+AGG + Chr6:108644423-108644442 None:intergenic 30.0%
CAAAGAAGTAAAAACTGAAC+AGG - Chr6:108646306-108646325 MsG0680035574.01.T02:intron 30.0%
CAACTAATTATGAGTACCTA+AGG + Chr6:108644009-108644028 None:intergenic 30.0%
CACACACACATGATAATTAT+GGG + Chr6:108643078-108643097 None:intergenic 30.0%
CATAACTATTCAGTGTTGTA+TGG - Chr6:108647271-108647290 MsG0680035574.01.T02:intron 30.0%
CCATTAGATAAGCTCAAATA+GGG + Chr6:108642286-108642305 None:intergenic 30.0%
CGAGAGTAAATGTCAAAATT+GGG - Chr6:108646249-108646268 MsG0680035574.01.T02:intron 30.0%
CTTTAATAATTTCCGATCAG+TGG + Chr6:108642238-108642257 None:intergenic 30.0%
GAGAGTAAATGTCAAAATTG+GGG - Chr6:108646250-108646269 MsG0680035574.01.T02:intron 30.0%
GATAGAATGAACTAATTCAC+AGG - Chr6:108644677-108644696 MsG0680035574.01.T01:CDS 30.0%
GCATCCAAGAAAGAAAAAAA+AGG + Chr6:108643665-108643684 None:intergenic 30.0%
GTAATGCCAATGATAATTGA+TGG - Chr6:108644655-108644674 MsG0680035574.01.T01:CDS 30.0%
GTTCTATATATAGCTGATAG+TGG - Chr6:108645659-108645678 MsG0680035574.01.T01:five_prime_UTR 30.0%
GTTGCTATCAAATACAAAGA+TGG - Chr6:108644232-108644251 MsG0680035574.01.T01:intron 30.0%
GTTTATCAGGAATTACGAAA+AGG + Chr6:108641638-108641657 None:intergenic 30.0%
TAAAAGAGTGATCAAGAAGA+AGG + Chr6:108644370-108644389 None:intergenic 30.0%
TCTGATCATGTATATGTGTT+AGG - Chr6:108646801-108646820 MsG0680035574.01.T02:intron 30.0%
TGTATGGATATGAAATGACT+AGG - Chr6:108647287-108647306 MsG0680035574.01.T02:intron 30.0%
TTAAAGTAGCAACTTTGACT+TGG - Chr6:108643816-108643835 MsG0680035574.01.T01:CDS 30.0%
TTAGGTTAAGGAACAAGAAA+AGG + Chr6:108641482-108641501 None:intergenic 30.0%
TTCCATTCTAAATCACTGAT+AGG - Chr6:108642346-108642365 MsG0680035574.01.T01:intron 30.0%
TTCCTATCAGTGATTTAGAA+TGG + Chr6:108642351-108642370 None:intergenic 30.0%
TTGAAATTAGTCATGAGCTT+TGG - Chr6:108647477-108647496 MsG0680035574.01.T02:five_prime_UTR 30.0%
TTTCATATGAAGGTTCTGTT+TGG - Chr6:108641884-108641903 MsG0680035574.01.T01:intron 30.0%
TTTCATTCTAAACCACTGAT+CGG - Chr6:108642223-108642242 MsG0680035574.01.T01:intron 30.0%
! AATACAATCTCCTTTTAGAC+AGG - Chr6:108646544-108646563 MsG0680035574.01.T02:intron 30.0%
! AGGAAGCCACATTAATTTTT+CGG - Chr6:108645881-108645900 MsG0680035574.01.T01:five_prime_UTR 30.0%
! ATGATAATTATGGGCCTTTT+TGG + Chr6:108643069-108643088 None:intergenic 30.0%
! ATGTTTTCAAAGAGAATGGT+GGG + Chr6:108647148-108647167 None:intergenic 30.0%
! ATTTGTTGAATATGTTGCGT+CGG - Chr6:108646931-108646950 MsG0680035574.01.T02:intron 30.0%
! CAGTATGTTTTCAAAGAGAA+TGG + Chr6:108647152-108647171 None:intergenic 30.0%
! CATTCTCTTTGAAAACATAC+TGG - Chr6:108647150-108647169 MsG0680035574.01.T02:intron 30.0%
! CCAGAATTTTACATCACAAA+GGG + Chr6:108642748-108642767 None:intergenic 30.0%
! CTATTTGAGTTTATCTACTG+CGG + Chr6:108642153-108642172 None:intergenic 30.0%
! CTGTTCAGTTTTTACTTCTT+TGG + Chr6:108646308-108646327 None:intergenic 30.0%
! TATGTTTTCAAAGAGAATGG+TGG + Chr6:108647149-108647168 None:intergenic 30.0%
! TCCAGAATTTTACATCACAA+AGG + Chr6:108642749-108642768 None:intergenic 30.0%
! TGATCACTCTTTTACTTTGT+TGG - Chr6:108644376-108644395 MsG0680035574.01.T01:intron 30.0%
! TTGTGTGTTTTCTCATGTTA+GGG - Chr6:108641808-108641827 MsG0680035574.01.T01:intron 30.0%
! TTTGCATTTGAAGTCAATGA+GGG - Chr6:108647446-108647465 MsG0680035574.01.T02:five_prime_UTR 30.0%
! TTTGTATTTGATAGCAACGA+CGG + Chr6:108644230-108644249 None:intergenic 30.0%
! TTTGTGTGTTTTCTCATGTT+AGG - Chr6:108641807-108641826 MsG0680035574.01.T01:intron 30.0%
!! AATCGTTTTTCAATTTACCC+AGG - Chr6:108641775-108641794 MsG0680035574.01.T01:CDS 30.0%
!! AATGACATAAGCTGTTTTGA+GGG - Chr6:108642428-108642447 MsG0680035574.01.T01:intron 30.0%
!! AATTTTGACATTTACTCTCG+TGG + Chr6:108646249-108646268 None:intergenic 30.0%
!! ATCGTTTTTCAATTTACCCA+GGG - Chr6:108641776-108641795 MsG0680035574.01.T01:CDS 30.0%
!! GCCATTTTCATAATCTACAT+TGG - Chr6:108642041-108642060 MsG0680035574.01.T01:intron 30.0%
!! TAATGACATAAGCTGTTTTG+AGG - Chr6:108642427-108642446 MsG0680035574.01.T01:intron 30.0%
!! TCAAAAGAATGTTTTGGGTA+TGG - Chr6:108642323-108642342 MsG0680035574.01.T01:intron 30.0%
!! TGGATTTGCTTTCATTTTTC+TGG - Chr6:108646427-108646446 MsG0680035574.01.T02:intron 30.0%
!! TTGCTTATTTTCTTTGCTCT+AGG - Chr6:108644182-108644201 MsG0680035574.01.T01:CDS 30.0%
!!! GTTTTGTTTCATTGTTTCGT+TGG - Chr6:108643268-108643287 MsG0680035574.01.T01:intron 30.0%
!!! TAATTTTTTAGAGGCGGTTT+GGG - Chr6:108642873-108642892 MsG0680035574.01.T01:intron 30.0%
!!! TCCTTTATTTTCTGCTACTA+AGG + Chr6:108646178-108646197 None:intergenic 30.0%
AAGATTTGAGTCATACATGC+CGG + Chr6:108643413-108643432 None:intergenic 35.0%
AATTTAGGCTCTGTTTGGAT+TGG - Chr6:108642388-108642407 MsG0680035574.01.T01:intron 35.0%
AGAATACATACAGAGTTCTC+TGG + Chr6:108644069-108644088 None:intergenic 35.0%
AGCTTATGAAAACAGCTAAC+AGG - Chr6:108642526-108642545 MsG0680035574.01.T01:intron 35.0%
AGGTAATAACACCTAGATGA+TGG - Chr6:108646742-108646761 MsG0680035574.01.T02:intron 35.0%
AGGTCCACAACTATTTAACT+CGG - Chr6:108645129-108645148 MsG0680035574.01.T01:five_prime_UTR 35.0%
ATAAGTTGTAAATGGGGAGA+GGG + Chr6:108645568-108645587 None:intergenic 35.0%
ATACAAAGATGGCATTCTCA+TGG - Chr6:108644243-108644262 MsG0680035574.01.T01:intron 35.0%
ATCAGGAATTACGAAAAGGA+AGG + Chr6:108641634-108641653 None:intergenic 35.0%
ATTGACCACCTAAGAAATGA+AGG - Chr6:108646147-108646166 MsG0680035574.01.T02:intron 35.0%
CATTGTGCATAAAATCCTAG+GGG + Chr6:108643152-108643171 None:intergenic 35.0%
CCCTATTTGAGCTTATCTAA+TGG - Chr6:108642283-108642302 MsG0680035574.01.T01:intron 35.0%
CCCTTTGTGATGTAAAATTC+TGG - Chr6:108642745-108642764 MsG0680035574.01.T01:intron 35.0%
CGCAGTAGATAAACTCAAAT+AGG - Chr6:108642151-108642170 MsG0680035574.01.T01:intron 35.0%
CTAGCACAATACAAACAAGA+AGG + Chr6:108643124-108643143 None:intergenic 35.0%
CTGAATGACAAGACAAAGTA+AGG + Chr6:108645250-108645269 None:intergenic 35.0%
GAATACATACAGAGTTCTCT+GGG + Chr6:108644068-108644087 None:intergenic 35.0%
GATGTGTAACATCAATACAC+TGG - Chr6:108646647-108646666 MsG0680035574.01.T02:intron 35.0%
GCATTGTGCATAAAATCCTA+GGG + Chr6:108643153-108643172 None:intergenic 35.0%
GCCATTAGATAAGCTCAAAT+AGG + Chr6:108642287-108642306 None:intergenic 35.0%
GCCTTAGTAGCAGAAAATAA+AGG - Chr6:108646174-108646193 MsG0680035574.01.T02:intron 35.0%
GCTTACTACCATGAATGATT+TGG - Chr6:108646607-108646626 MsG0680035574.01.T02:intron 35.0%
GTGAATCGAAGAGATAGAAT+TGG + Chr6:108641681-108641700 None:intergenic 35.0%
GTGCAATATTGCACATGTTA+AGG + Chr6:108643948-108643929 None:intergenic 35.0%
TAACTCGGGTGATGTATAAT+AGG - Chr6:108645144-108645163 MsG0680035574.01.T01:five_prime_UTR 35.0%
TAAGCTTATGCATAAGCTGT+AGG - Chr6:108643035-108643054 MsG0680035574.01.T01:intron 35.0%
TAATTACGAAGACAACCATG+TGG - Chr6:108645345-108645364 MsG0680035574.01.T01:five_prime_UTR 35.0%
TAGATAAACTCAAATAGGCC+CGG - Chr6:108642156-108642175 MsG0680035574.01.T01:intron 35.0%
TAGGAAAGTTCCTGTCTAAA+AGG + Chr6:108646557-108646576 None:intergenic 35.0%
TCAAATAACTTTCCCTCCAT+GGG + Chr6:108646344-108646363 None:intergenic 35.0%
TCAGGAATTACGAAAAGGAA+GGG + Chr6:108641633-108641652 None:intergenic 35.0%
TGCATTGTGCATAAAATCCT+AGG + Chr6:108643154-108643173 None:intergenic 35.0%
TGTGTTTGTGTATCTTATCC+AGG - Chr6:108645306-108645325 MsG0680035574.01.T01:five_prime_UTR 35.0%
TTAAAAAGTTACAGGAGGAC+TGG + Chr6:108644506-108644525 None:intergenic 35.0%
TTGCTTATGACCCAATTAAG+CGG - Chr6:108646687-108646706 MsG0680035574.01.T02:intron 35.0%
TTTGTTGAATATGTTGCGTC+GGG - Chr6:108646932-108646951 MsG0680035574.01.T02:intron 35.0%
! CAAACCGCCTCTAAAAAATT+AGG + Chr6:108642874-108642893 None:intergenic 35.0%
! GTTTGCATTTGAAGTCAATG+AGG - Chr6:108647445-108647464 MsG0680035574.01.T02:five_prime_UTR 35.0%
! TGTTTCGTTGGACTTTTGTT+GGG - Chr6:108643280-108643299 MsG0680035574.01.T01:intron 35.0%
! TTGCATTTGAAGTCAATGAG+GGG - Chr6:108647447-108647466 MsG0680035574.01.T02:five_prime_UTR 35.0%
! TTGTTTCGTTGGACTTTTGT+TGG - Chr6:108643279-108643298 MsG0680035574.01.T01:intron 35.0%
! TTTTCAATTTACCCAGGGTT+AGG - Chr6:108641781-108641800 MsG0680035574.01.T01:CDS 35.0%
!! CAGAAGAAAAGCACTAAAAC+TGG + Chr6:108644571-108644590 None:intergenic 35.0%
!! GTTCTTGGTGGTGTTAAAAA+GGG - Chr6:108645200-108645219 MsG0680035574.01.T01:five_prime_UTR 35.0%
!! TGATGATTTGTTTCGTTCGT+TGG - Chr6:108646989-108647008 MsG0680035574.01.T02:intron 35.0%
!! TGTTCTTGGTGGTGTTAAAA+AGG - Chr6:108645199-108645218 MsG0680035574.01.T01:five_prime_UTR 35.0%
!! TTCTTGGTGGTGTTAAAAAG+GGG - Chr6:108645201-108645220 MsG0680035574.01.T01:five_prime_UTR 35.0%
!!! AGTGATTGTCATTTTTCCCA+TGG - Chr6:108643532-108643551 MsG0680035574.01.T01:CDS 35.0%
!!! CTAATTTTTTAGAGGCGGTT+TGG - Chr6:108642872-108642891 MsG0680035574.01.T01:intron 35.0%
!!! CTACTGGCCTAATTTTTTAG+AGG - Chr6:108642864-108642883 MsG0680035574.01.T01:intron 35.0%
AAATAGTTGTGGACCTCCTT+AGG + Chr6:108645125-108645144 None:intergenic 40.0%
AAGTAAAAACTGAACAGGGG+TGG - Chr6:108646311-108646330 MsG0680035574.01.T02:intron 40.0%
ACACACAAAAAACCTAACCC+TGG + Chr6:108641796-108641815 None:intergenic 40.0%
ACATGTTGTCAATAAGGCTG+CGG + Chr6:108645079-108645098 None:intergenic 40.0%
ACCAACTGTTGGATTCTTGA+AGG + Chr6:108647186-108647205 None:intergenic 40.0%
ACGCAGCAAGAAAATGAAAC+AGG + Chr6:108645523-108645542 None:intergenic 40.0%
AGAACAAGTGAGTTCCACAA+TGG + Chr6:108645185-108645204 None:intergenic 40.0%
AGAACTGTCTCGTAATTCAC+AGG + Chr6:108646775-108646794 None:intergenic 40.0%
AGATTTGAGTCATACATGCC+GGG + Chr6:108643412-108643431 None:intergenic 40.0%
AGGAAACATCCTCATAACTC+TGG + Chr6:108646066-108646085 None:intergenic 40.0%
AGGTAACATGTGATGTGAGT+TGG + Chr6:108646009-108646028 None:intergenic 40.0%
AGTAAAAACTGAACAGGGGT+GGG - Chr6:108646312-108646331 MsG0680035574.01.T02:intron 40.0%
AGTTAACAGAGAGAGAGCTA+TGG + Chr6:108644318-108644337 None:intergenic 40.0%
ATAATTGAAGAGGGAGGAAG+AGG + Chr6:108644093-108644112 None:intergenic 40.0%
ATCTGAACGTGACATCCTTA+TGG - Chr6:108646031-108646050 MsG0680035574.01.T02:intron 40.0%
ATTCTCATGGCTGCTGATAT+GGG - Chr6:108644256-108644275 MsG0680035574.01.T01:intron 40.0%
ATTGACAACATGTGGGATGA+TGG - Chr6:108645086-108645105 MsG0680035574.01.T01:five_prime_UTR 40.0%
CACACAAAAAACCTAACCCT+GGG + Chr6:108641795-108641814 None:intergenic 40.0%
CATCCCACATGTTGTCAATA+AGG + Chr6:108645085-108645104 None:intergenic 40.0%
CCTCATAACTCTGGACTTAA+GGG + Chr6:108646057-108646076 None:intergenic 40.0%
CTCAAATAACTTTCCCTCCA+TGG + Chr6:108646345-108646364 None:intergenic 40.0%
CTTATCCAGGTTAGCATGAT+TGG - Chr6:108645319-108645338 MsG0680035574.01.T01:five_prime_UTR 40.0%
CTTTCCTATCATAGAGCCAT+TGG - Chr6:108646569-108646588 MsG0680035574.01.T02:intron 40.0%
GAAAACATACTGGGAGTTCT+CGG - Chr6:108647160-108647179 MsG0680035574.01.T02:intron 40.0%
GATAAGTTGTAAATGGGGAG+AGG + Chr6:108645569-108645588 None:intergenic 40.0%
GATGCAATACCCTTTGCAAA+CGG - Chr6:108643680-108643699 MsG0680035574.01.T01:intron 40.0%
GCAACAAGTTCAATCCATTG+TGG - Chr6:108645168-108645187 MsG0680035574.01.T01:five_prime_UTR 40.0%
GGAGGAAGAATACCTTGAAT+CGG + Chr6:108641550-108641569 None:intergenic 40.0%
GGTCCACAACTATTTAACTC+GGG - Chr6:108645130-108645149 MsG0680035574.01.T01:five_prime_UTR 40.0%
GTAAACAGTAGCACCTTCTT+CGG + Chr6:108647126-108647145 None:intergenic 40.0%
GTTCATATGGATCTACACTG+AGG - Chr6:108644699-108644718 MsG0680035574.01.T01:CDS 40.0%
TAATTGAAGAGGGAGGAAGA+GGG + Chr6:108644092-108644111 None:intergenic 40.0%
TCACCCGAGTTAAATAGTTG+TGG + Chr6:108645136-108645155 None:intergenic 40.0%
TCCTCATAACTCTGGACTTA+AGG + Chr6:108646058-108646077 None:intergenic 40.0%
TGCAGCTTATTTCACAAACG+TGG - Chr6:108641922-108641941 MsG0680035574.01.T01:intron 40.0%
TGGGGAAATAAGTGACTTTC+AGG - Chr6:108644778-108644797 MsG0680035574.01.T01:intron 40.0%
TGTACATGCTGTCACTGTTA+AGG - Chr6:108645861-108645880 MsG0680035574.01.T01:five_prime_UTR 40.0%
TGTAGGCTGTCTATCCAAAA+AGG - Chr6:108643052-108643071 MsG0680035574.01.T01:intron 40.0%
TGTGCGTTACAACATACCAT+GGG + Chr6:108643551-108643570 None:intergenic 40.0%
TGTGTGTTTCCGTTTGCAAA+GGG + Chr6:108643692-108643711 None:intergenic 40.0%
TTACTCACATGAGCTCATCA+AGG + Chr6:108644817-108644836 None:intergenic 40.0%
TTGACAACATGTGGGATGAT+GGG - Chr6:108645087-108645106 MsG0680035574.01.T01:five_prime_UTR 40.0%
TTGTGGAACTCACTTGTTCT+TGG - Chr6:108645185-108645204 MsG0680035574.01.T01:five_prime_UTR 40.0%
TTGTGTGTTTCCGTTTGCAA+AGG + Chr6:108643693-108643712 None:intergenic 40.0%
! CAAACCAATGGCTCTATGAT+AGG + Chr6:108646576-108646595 None:intergenic 40.0%
! GTTTCGTTGGACTTTTGTTG+GGG - Chr6:108643281-108643300 MsG0680035574.01.T01:intron 40.0%
! TGTCAAAATTGGGGCTTTGA+AGG - Chr6:108646259-108646278 MsG0680035574.01.T02:intron 40.0%
!! ATAGGTTGATTTGTCGGCAT+GGG - Chr6:108646400-108646419 MsG0680035574.01.T02:intron 40.0%
!! ATCATAGAGCCATTGGTTTG+TGG - Chr6:108646576-108646595 MsG0680035574.01.T02:intron 40.0%
!! CAGCCTTATTGACAACATGT+GGG - Chr6:108645079-108645098 MsG0680035574.01.T01:five_prime_UTR 40.0%
!! GCTGTTTTCATAGGCTATCT+TGG + Chr6:108642690-108642709 None:intergenic 40.0%
!! TATAGGTTGATTTGTCGGCA+TGG - Chr6:108646399-108646418 MsG0680035574.01.T02:intron 40.0%
!!! CTGGCCTAATTTTTTAGAGG+CGG - Chr6:108642867-108642886 MsG0680035574.01.T01:intron 40.0%
AAGACAACCATGTGGCAACT+GGG - Chr6:108645353-108645372 MsG0680035574.01.T01:five_prime_UTR 45.0%
AATTAAGCGGCCGCAAAATC+TGG - Chr6:108646700-108646719 MsG0680035574.01.T02:intron 45.0%
ACAAACAAAACTCTCAGCCG+AGG + Chr6:108646483-108646502 None:intergenic 45.0%
AGGATGTCACGTTCAGATCT+AGG + Chr6:108646029-108646048 None:intergenic 45.0%
AGGCACAGCCTTCATTTCTT+AGG + Chr6:108646158-108646177 None:intergenic 45.0%
ATCACGAACTCTCCGATTCA+AGG - Chr6:108641535-108641554 MsG0680035574.01.T01:three_prime_UTR 45.0%
CACAGCCTTCATTTCTTAGG+TGG + Chr6:108646155-108646174 None:intergenic 45.0%
CACTAAAACTGGCCCTTGTA+AGG + Chr6:108644560-108644579 None:intergenic 45.0%
CATTCTCATGGCTGCTGATA+TGG - Chr6:108644255-108644274 MsG0680035574.01.T01:intron 45.0%
CCCTTAAGTCCAGAGTTATG+AGG - Chr6:108646054-108646073 MsG0680035574.01.T02:intron 45.0%
CTAGTGCAACCACAAACCAA+TGG + Chr6:108646588-108646607 None:intergenic 45.0%
CTGTGCGTTACAACATACCA+TGG + Chr6:108643552-108643571 None:intergenic 45.0%
GCCTTCAAGAATCCAACAGT+TGG - Chr6:108647182-108647201 MsG0680035574.01.T02:intron 45.0%
GGCTTGGAAATCATCTTGCT+AGG - Chr6:108645374-108645393 MsG0680035574.01.T01:five_prime_UTR 45.0%
GTCTGCTGTGAACAAGATTC+AGG - Chr6:108645492-108645511 MsG0680035574.01.T01:five_prime_UTR 45.0%
TAACGCCAATCATGCTAACC+TGG + Chr6:108645327-108645346 None:intergenic 45.0%
TCTAGGTACCCATACGTAAC+TGG - Chr6:108644199-108644218 MsG0680035574.01.T01:CDS 45.0%
TGAATCCTTCGTCGTTGTGA+TGG - Chr6:108644027-108644046 MsG0680035574.01.T01:intron 45.0%
TGATCAACTAGCATGCCCAA+AGG - Chr6:108645690-108645709 MsG0680035574.01.T01:five_prime_UTR 45.0%
TGGAACTCACTTGTTCTTGG+TGG - Chr6:108645188-108645207 MsG0680035574.01.T01:five_prime_UTR 45.0%
TGGGCATGCTAGTTGATCAA+AGG + Chr6:108645689-108645708 None:intergenic 45.0%
TGTTCACAGCAGACCTATCA+CGG + Chr6:108645486-108645505 None:intergenic 45.0%
! AGATTTTGCGGCCGCTTAAT+TGG + Chr6:108646701-108646720 None:intergenic 45.0%
! GAGTGCTTTTGTACCGTGAT+AGG - Chr6:108645470-108645489 MsG0680035574.01.T01:five_prime_UTR 45.0%
! GATTTTGCGGCCGCTTAATT+GGG + Chr6:108646700-108646719 None:intergenic 45.0%
! GGACTTTTGTTGGGGTTACA+GGG - Chr6:108643289-108643308 MsG0680035574.01.T01:intron 45.0%
! GTATTTGATAGCAACGACGG+AGG + Chr6:108644227-108644246 None:intergenic 45.0%
! GTTGAGCGTTTGAAGCCTAT+TGG - Chr6:108644731-108644750 MsG0680035574.01.T01:intron 45.0%
! TAGCCACTGACCAGATTTTG+CGG + Chr6:108646713-108646732 None:intergenic 45.0%
! TGGACTTTTGTTGGGGTTAC+AGG - Chr6:108643288-108643307 MsG0680035574.01.T01:intron 45.0%
!! AAAAAGGGGCAGAAGTACCT+TGG - Chr6:108645215-108645234 MsG0680035574.01.T01:five_prime_UTR 45.0%
!! AATCCAACAGTTGGTGCTGA+AGG - Chr6:108647191-108647210 MsG0680035574.01.T02:intron 45.0%
!! AGAAGGGAGTGCTTTCCAAT+AGG + Chr6:108644749-108644768 None:intergenic 45.0%
!! ATTGGAAAGCACTCCCTTCT+TGG - Chr6:108644749-108644768 MsG0680035574.01.T01:intron 45.0%
!! GCAGCCTTATTGACAACATG+TGG - Chr6:108645078-108645097 MsG0680035574.01.T01:five_prime_UTR 45.0%
!! TGGGATGATGGGAACTCTTT+GGG - Chr6:108645098-108645117 MsG0680035574.01.T01:five_prime_UTR 45.0%
!!! AGCTGTTTTGAGGGACTGTT+TGG - Chr6:108642437-108642456 MsG0680035574.01.T01:intron 45.0%
!!! GCTGTTTTGAGGGACTGTTT+GGG - Chr6:108642438-108642457 MsG0680035574.01.T01:intron 45.0%
AAGTAAGGCATACCGTGCCA+AGG + Chr6:108645235-108645254 None:intergenic 50.0%
ACGGAGGATCCAGTTACGTA+TGG + Chr6:108644211-108644230 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr6:108641569-108641588 None:intergenic 50.0%
AGTGTCCATCACAACGACGA+AGG + Chr6:108644035-108644054 None:intergenic 50.0%
AGTTGTAAATGGGGAGAGGG+AGG + Chr6:108645565-108645584 None:intergenic 50.0%
ATTGTGCTAGAACAGCCCCT+AGG - Chr6:108643134-108643153 MsG0680035574.01.T01:intron 50.0%
CACGGATGCTGAACAAGATG+AGG + Chr6:108646829-108646848 None:intergenic 50.0%
CAGGCAAGCAACCATCATCT+AGG + Chr6:108646756-108646775 None:intergenic 50.0%
CGGAGGATCCAGTTACGTAT+GGG + Chr6:108644210-108644229 None:intergenic 50.0%
CTCTGGACTTAAGGGCCATA+AGG + Chr6:108646049-108646068 None:intergenic 50.0%
GAACCTTCAGCACCAACTGT+TGG + Chr6:108647197-108647216 None:intergenic 50.0%
GAAGACAACCATGTGGCAAC+TGG - Chr6:108645352-108645371 MsG0680035574.01.T01:five_prime_UTR 50.0%
GTCATTCAGTCCGACAGTTG+AGG - Chr6:108645261-108645280 MsG0680035574.01.T01:five_prime_UTR 50.0%
TTCCACTCATCGCGGAGAAT+TGG + Chr6:108645400-108645419 None:intergenic 50.0%
TTCCCCACTAGCACCAAGAA+GGG + Chr6:108644765-108644784 None:intergenic 50.0%
TTTCCCCACTAGCACCAAGA+AGG + Chr6:108644766-108644785 None:intergenic 50.0%
! GTCAGTGGCTAGTTACTGGA+AGG - Chr6:108646722-108646741 MsG0680035574.01.T02:intron 50.0%
! TCTGGTCAGTGGCTAGTTAC+TGG - Chr6:108646718-108646737 MsG0680035574.01.T02:intron 50.0%
! TTAAGTTTAGGGCGCAGTGC+AGG + Chr6:108646969-108646988 None:intergenic 50.0%
!! ACTCCCTTCTTGGTGCTAGT+GGG - Chr6:108644759-108644778 MsG0680035574.01.T01:intron 50.0%
!! CAGGAAGGTACCTCAACTGT+CGG + Chr6:108645274-108645293 None:intergenic 50.0%
!! CAGTTGGTGCTGAAGGTTCA+TGG - Chr6:108647198-108647217 MsG0680035574.01.T02:intron 50.0%
!! GAACTCTTTGGGACCTAAGG+AGG - Chr6:108645109-108645128 MsG0680035574.01.T01:five_prime_UTR 50.0%
!! GTGGGATGATGGGAACTCTT+TGG - Chr6:108645097-108645116 MsG0680035574.01.T01:five_prime_UTR 50.0%
!! TGGGAACTCTTTGGGACCTA+AGG - Chr6:108645106-108645125 MsG0680035574.01.T01:five_prime_UTR 50.0%
AACCATGTGGCAACTGGGCT+TGG - Chr6:108645358-108645377 MsG0680035574.01.T01:five_prime_UTR 55.0%
CTCATGGCTGCTGATATGGG+AGG - Chr6:108644259-108644278 MsG0680035574.01.T01:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+AGG + Chr6:108641568-108641587 None:intergenic 55.0%
GATTTGTCGGCATGGGAGTC+TGG - Chr6:108646407-108646426 MsG0680035574.01.T02:intron 55.0%
TCAGCCGAGGAGAAACAGTC+TGG + Chr6:108646470-108646489 None:intergenic 55.0%
TTCCAAGCCCAGTTGCCACA+TGG + Chr6:108645363-108645382 None:intergenic 55.0%
! CACGCCAGACTGTTTCTCCT+CGG - Chr6:108646463-108646482 MsG0680035574.01.T02:intron 55.0%
!! CACTCCCTTCTTGGTGCTAG+TGG - Chr6:108644758-108644777 MsG0680035574.01.T01:intron 55.0%
!! CTCCCTTCTTGGTGCTAGTG+GGG - Chr6:108644760-108644779 MsG0680035574.01.T01:intron 55.0%
CGAGGAGAAACAGTCTGGCG+TGG + Chr6:108646465-108646484 None:intergenic 60.0%
CGGCCGCAAAATCTGGTCAG+TGG - Chr6:108646707-108646726 MsG0680035574.01.T02:intron 60.0%
GGCCAATTCTCCGCGATGAG+TGG - Chr6:108645395-108645414 MsG0680035574.01.T01:five_prime_UTR 60.0%
!! GGGGCAGAAGTACCTTGGCA+CGG - Chr6:108645220-108645239 MsG0680035574.01.T01:five_prime_UTR 60.0%
! GGTGGGCTTGCACCCATGGA+GGG - Chr6:108646329-108646348 MsG0680035574.01.T02:intron 65.0%
! CAGGGGTGGGCTTGCACCCA+TGG - Chr6:108646325-108646344 MsG0680035574.01.T02:intron 70.0%
! GGGTGGGCTTGCACCCATGG+AGG - Chr6:108646328-108646347 MsG0680035574.01.T02:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 108641425 108647502 108641425 ID=MsG0680035574.01;Name=MsG0680035574.01
Chr6 mRNA 108641425 108646038 108641425 ID=MsG0680035574.01.T01;Parent=MsG0680035574.01;Name=MsG0680035574.01.T01;_AED=0.33;_eAED=0.33;_QI=1137|1|1|1|0.83|0.71|7|279|232
Chr6 exon 108644850 108644962 108644850 ID=MsG0680035574.01.T01:exon:14479;Parent=MsG0680035574.01.T01
Chr6 exon 108644983 108646038 108644983 ID=MsG0680035574.01.T01:exon:14478;Parent=MsG0680035574.01.T01
Chr6 five_prime_UTR 108644983 108646038 108644983 ID=MsG0680035574.01.T01:five_prime_utr;Parent=MsG0680035574.01.T01
Chr6 five_prime_UTR 108644882 108644962 108644882 ID=MsG0680035574.01.T01:five_prime_utr;Parent=MsG0680035574.01.T01
Chr6 CDS 108644850 108644881 108644850 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 CDS 108644647 108644723 108644647 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 CDS 108644099 108644228 108644099 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 CDS 108643686 108643845 108643686 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 CDS 108643414 108643599 108643414 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 CDS 108641704 108641817 108641704 ID=MsG0680035574.01.T01:cds;Parent=MsG0680035574.01.T01
Chr6 three_prime_UTR 108641425 108641703 108641425 ID=MsG0680035574.01.T01:three_prime_utr;Parent=MsG0680035574.01.T01
Chr6 mRNA 108641425 108647502 108641425 ID=MsG0680035574.01.T02;Parent=MsG0680035574.01;Name=MsG0680035574.01.T02;_AED=0.41;_eAED=0.41;_QI=166|1|1|1|0.83|0.71|7|279|232
Chr6 exon 108644850 108644915 108644850 ID=MsG0680035574.01.T02:exon:14486;Parent=MsG0680035574.01.T02
Chr6 exon 108647371 108647502 108647371 ID=MsG0680035574.01.T02:exon:14485;Parent=MsG0680035574.01.T02
Chr6 five_prime_UTR 108647371 108647502 108647371 ID=MsG0680035574.01.T02:five_prime_utr;Parent=MsG0680035574.01.T02
Chr6 five_prime_UTR 108644882 108644915 108644882 ID=MsG0680035574.01.T02:five_prime_utr;Parent=MsG0680035574.01.T02
Chr6 CDS 108644850 108644881 108644850 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 CDS 108644647 108644723 108644647 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 CDS 108644099 108644228 108644099 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 CDS 108643686 108643845 108643686 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 CDS 108643414 108643599 108643414 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 CDS 108641704 108641817 108641704 ID=MsG0680035574.01.T02:cds;Parent=MsG0680035574.01.T02
Chr6 three_prime_UTR 108641425 108641703 108641425 ID=MsG0680035574.01.T02:three_prime_utr;Parent=MsG0680035574.01.T02
Gene Sequence

>MsG0680035574.01.T01

ATGGACACTGTAACTGAATCCCAGAGAACTCTGTACCCATACGTAACTGGATCCTCCGTCGTTGCTATCAAATACAAAGATGGCATTCTCATGGCTGCTGATATGGGAGGTTCATATGGATCTACACTGAGGTACAAGAGTGTTGAGCGTTTGAAGCCTATTGGAAAGCACTCCCTTCTTGGTGCTAGTGGGGAAATAAGTGACTTTCAGGAGATTATGCGCTACCTTGATGAGCTCATCCTTATTGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAGGAGGTCCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAATCCATTGTGGAACTCACTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTACCTTGGCACGGTTAGCATGATTGGCGTTAATTACGAAGACAACCATGTGGCAACTGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGCGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAAGTTACTCGAAAAATGCATGCGAGTGCTTTTGTACCGTGATAGGTCTGCTGTGAACAAGATTCAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTACCCACCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCAACAGTTGGTGCTGAAGGTTCATGGTAG

>MsG0680035574.01.T02

ATGGACACTGTAACTGAATCCCAGAGAACTCTGTACCCATACGTAACTGGATCCTCCGTCGTTGCTATCAAATACAAAGATGGCATTCTCATGGCTGCTGATATGGGAGGTTCATATGGATCTACACTGAGGTACAAGAGTGTTGAGCGTTTGAAGCCTATTGGAAAGCACTCCCTTCTTGGTGCTAGTGGGGAAATAAGTGACTTTCAGGAGATTATGCGCTACCTTGATGAGCTCATCCTTATTGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAGGAGGTCCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAATCCATTGTGGAACTCACTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTACCTTGGCACGGTTAGCATGATTGGCGTTAATTACGAAGACAACCATGTGGCAACTGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGCGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAAGTTACTCGAAAAATGCATGCGAGTGCTTTTGTACCGTGATAGGTCTGCTGTGAACAAGATTCAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTACCCACCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCAACAGTTGGTGCTGAAGGTTCATGGTAG

Protein sequence

>MsG0680035574.01.T01

MDTVTESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDFQEIMRYLDELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW*

>MsG0680035574.01.T02

MDTVTESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDFQEIMRYLDELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW*