AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006378.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006378.01.T01 MTR_2g007220 98.765 405 5 0 32 436 6 410 0.0 832
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006378.01.T01 AT1G10780 65.757 403 137 1 33 435 5 406 0.0 563
MsG0280006378.01.T01 AT1G10780 66.085 401 135 1 35 435 1 400 0.0 562

Find 121 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCAAATGCTTGGTTTC+AGG 0.149041 2:+1040870 None:intergenic
TTATGGAACGTTTCCCATTT+AGG 0.175370 2:+1041140 None:intergenic
TGATCAAACTTATCCCTAAA+TGG 0.192449 2:-1041154 MsG0280006378.01.T01:CDS
CTTGAATCATTGGTAAAGTA+TGG 0.210999 2:-1040108 MsG0280006378.01.T01:CDS
AGAGTATACATGATTGATTT+TGG 0.231137 2:-1040681 MsG0280006378.01.T01:CDS
AACCAAACCTTTGATTCTTT+TGG 0.254388 2:+1039692 None:intergenic
AAATCAACAAAATCAATTTC+TGG 0.256476 2:+1040510 None:intergenic
CTGTGTATGGCCTTGCTTCA+TGG 0.264549 2:-1041322 MsG0280006378.01.T01:CDS
TATGGAACGTTTCCCATTTA+GGG 0.268647 2:+1041141 None:intergenic
CTTCAAGGATCCTAAGATTA+TGG 0.284602 2:+1041123 None:intergenic
ATTCAATTGCAAAGCTTTGA+TGG 0.289129 2:+1044177 None:intergenic
GCTTCATGGCTATCACTTGC+AGG 0.307648 2:-1041308 MsG0280006378.01.T01:CDS
GGGAAACGTTCCATAATCTT+AGG 0.315212 2:-1041133 MsG0280006378.01.T01:CDS
TGAATTTGTGATTCCATGTT+TGG 0.332405 2:-1040187 MsG0280006378.01.T01:CDS
AGTAGCAACCTTGTCAGATT+TGG 0.335278 2:+1041047 None:intergenic
ACAACAAATGATCATTGCTT+TGG 0.342019 2:+1039589 None:intergenic
TTCAGAAGTCTAGCCGTAAC+TGG 0.343031 2:+1039917 None:intergenic
TTAGGATCCTTGAAGTTGTT+GGG 0.351315 2:-1041115 MsG0280006378.01.T01:CDS
TGCAGTAAATGCAATTATTC+AGG 0.354985 2:-1041075 MsG0280006378.01.T01:CDS
TCAAGATTATGTTACACTTT+CGG 0.366892 2:-1039654 MsG0280006378.01.T01:three_prime_UTR
TACAAGGCTGTAGTTGGATT+AGG 0.380330 2:-1040896 MsG0280006378.01.T01:CDS
CTTAGGATCCTTGAAGTTGT+TGG 0.389083 2:-1041116 MsG0280006378.01.T01:CDS
TTTATTGCTTGTCGATGCCT+TGG 0.396042 2:-1039553 MsG0280006378.01.T01:three_prime_UTR
TCTTCAAATGCTTGGTTTCA+GGG 0.396771 2:+1040871 None:intergenic
CAACAAATGATCATTGCTTT+GGG 0.397588 2:+1039590 None:intergenic
AATGAGCACTCTTGAATCAT+TGG 0.400416 2:-1040118 MsG0280006378.01.T01:CDS
CCAATGCAATCCAACTTTGA+TGG 0.404251 2:+1041218 None:intergenic
TACTGCCCTTTCTCTGTGTA+TGG 0.406508 2:-1041335 MsG0280006378.01.T01:CDS
TCTTGAATAAGCTTGATTGT+AGG 0.409281 2:+1039721 None:intergenic
TGAAAGATTCTTCAAATGCT+TGG 0.409351 2:+1040863 None:intergenic
CTCTTGCCCCAACAACTTCA+AGG 0.412272 2:+1041108 None:intergenic
TTATGTTACACTTTCGGAAA+AGG 0.412378 2:-1039648 MsG0280006378.01.T01:three_prime_UTR
AAGGCATCGACAAGCAATAA+AGG 0.420147 2:+1039555 None:intergenic
GACCAAAAGAATCAAAGGTT+TGG 0.420514 2:-1039694 MsG0280006378.01.T01:three_prime_UTR
GATCAAACTTATCCCTAAAT+GGG 0.424364 2:-1041153 MsG0280006378.01.T01:CDS
TCTTGGAAATTTATGCTACA+TGG 0.426045 2:-1039752 MsG0280006378.01.T01:three_prime_UTR
ACAAGGCTGTAGTTGGATTA+GGG 0.427712 2:-1040895 MsG0280006378.01.T01:CDS
CATTCGACTACCTGCACTGT+TGG 0.430763 2:+1040836 None:intergenic
ACAAAATCAATTTCTGGAAA+GGG 0.432172 2:+1040516 None:intergenic
TATCAAGATTCTTCAGATGA+AGG 0.439513 2:-1040064 MsG0280006378.01.T01:CDS
TATGTTACACTTTCGGAAAA+GGG 0.440873 2:-1039647 MsG0280006378.01.T01:three_prime_UTR
AACAAAATCAATTTCTGGAA+AGG 0.445993 2:+1040515 None:intergenic
TTATTGCTTGTCGATGCCTT+GGG 0.450150 2:-1039552 MsG0280006378.01.T01:three_prime_UTR
CACGGTGCATGTATCTGAAC+CGG 0.452753 2:+1040002 None:intergenic
TATATGAAGGTTGAATTCAC+CGG 0.457387 2:-1040558 MsG0280006378.01.T01:CDS
ACATGAAAGCCCATCAAAGT+TGG 0.466038 2:-1041228 MsG0280006378.01.T01:CDS
ATATCAAACTTGCGCAGCTT+GGG 0.468187 2:+1040474 None:intergenic
CTGGCATAGTGCTGCAAACA+TGG 0.469002 2:+1040443 None:intergenic
GCAAGGCCATACACAGAGAA+AGG 0.474113 2:+1041329 None:intergenic
TACAATCAAGCTTATTCAAG+AGG 0.477254 2:-1039719 MsG0280006378.01.T01:three_prime_UTR
ATGTGGAAACTCTAAAATTG+TGG 0.481641 2:-1041184 MsG0280006378.01.T01:CDS
AGGTCCGTCTCTCTCTCATC+TGG 0.487819 2:-1041288 MsG0280006378.01.T01:CDS
GATATCAAACTTGCGCAGCT+TGG 0.490212 2:+1040473 None:intergenic
CTCTCATCTGGAGCTTCGAA+TGG 0.496250 2:-1041276 MsG0280006378.01.T01:CDS
TTATCTAATTCAGAGAATGA+AGG 0.497659 2:-1039820 MsG0280006378.01.T01:three_prime_UTR
CGATGACTTCCTTGCAAAGA+TGG 0.498978 2:-1039616 MsG0280006378.01.T01:three_prime_UTR
TCGAGGTACAAGGCTGTAGT+TGG 0.501402 2:-1040902 MsG0280006378.01.T01:CDS
ATGTACTGAAGTATGACATC+AGG 0.505612 2:+1041554 None:intergenic
ATCAGCCGTTGAGAGATTAG+AGG 0.507988 2:-1041369 MsG0280006378.01.T01:CDS
CTTTCAATTTCCAACAGTGC+AGG 0.508430 2:-1040846 MsG0280006378.01.T01:intron
AATAAGCTTGATTGTAGGCA+TGG 0.511461 2:+1039726 None:intergenic
CAACCTTGTCAGATTTGGAC+AGG 0.511798 2:+1041052 None:intergenic
CAATGCAATCCAACTTTGAT+GGG 0.512313 2:+1041219 None:intergenic
CCATCAAAGTTGGATTGCAT+TGG 0.513791 2:-1041218 MsG0280006378.01.T01:CDS
CAAGGCCATACACAGAGAAA+GGG 0.514970 2:+1041330 None:intergenic
TGACATCATTGTGAAAAGAA+TGG 0.515415 2:-1041393 MsG0280006378.01.T01:CDS
AACAAGACAAAGAGAAACTA+GGG 0.515915 2:+1039507 None:intergenic
ATCAAGATTCTTCAGATGAA+GGG 0.518042 2:-1040063 MsG0280006378.01.T01:CDS
CTGCGCAAGTTTGATATCCA+TGG 0.520959 2:-1040468 MsG0280006378.01.T01:CDS
AGTACAGTAAAACAATGTCT+TGG 0.524086 2:-1039769 MsG0280006378.01.T01:three_prime_UTR
TATCTAATTCAGAGAATGAA+GGG 0.524169 2:-1039819 MsG0280006378.01.T01:three_prime_UTR
CCCTGGAGTTTCTGTCAATG+AGG 0.528486 2:-1040647 MsG0280006378.01.T01:CDS
CCCTCATTGACAGAAACTCC+AGG 0.531655 2:+1040646 None:intergenic
CTGACAAGGTTGCTACTGCT+TGG 0.532871 2:-1041041 MsG0280006378.01.T01:CDS
TGTGGAAACTCTAAAATTGT+GGG 0.532904 2:-1041183 MsG0280006378.01.T01:CDS
TTCGTACTGATTTCCAGTTA+CGG 0.533926 2:-1039930 MsG0280006378.01.T01:three_prime_UTR
TGTGATTCCATGTTTGGAGG+AGG 0.535055 2:-1040181 MsG0280006378.01.T01:CDS
TTGAATCATTGGTAAAGTAT+GGG 0.539200 2:-1040107 MsG0280006378.01.T01:CDS
AAACAAGACAAAGAGAAACT+AGG 0.551859 2:+1039506 None:intergenic
TTGCAAGGAAGTCATCGCAT+TGG 0.553807 2:+1039622 None:intergenic
AGGGAGACCAAAAGAATCAA+AGG 0.556544 2:-1039699 MsG0280006378.01.T01:three_prime_UTR
TAGGATCCTTGAAGTTGTTG+GGG 0.559049 2:-1041114 MsG0280006378.01.T01:CDS
TGTGAAACATCTTTATATGA+AGG 0.559278 2:-1040571 MsG0280006378.01.T01:CDS
GCAATTGTGTTTCTAAGCGA+TGG 0.559701 2:-1041493 MsG0280006378.01.T01:CDS
ATGAAGACCTCCTCCAAACA+TGG 0.559835 2:+1040174 None:intergenic
ATTGAATCTCTCGAGGTACA+AGG 0.560371 2:-1040912 MsG0280006378.01.T01:CDS
CCTGGAGTTTCTGTCAATGA+GGG 0.562266 2:-1040646 MsG0280006378.01.T01:CDS
CAAACTTGCGCAGCTTGGGA+TGG 0.564636 2:+1040478 None:intergenic
TTGCTACTGCTTGGATGTGA+AGG 0.570826 2:-1041032 MsG0280006378.01.T01:CDS
GTGCTGCAAACATGGCTCCA+TGG 0.570847 2:+1040451 None:intergenic
ACAGAAACTCCAGGGATGCA+AGG 0.571452 2:+1040655 None:intergenic
ATATGAAGGTTGAATTCACC+GGG 0.576078 2:-1040557 MsG0280006378.01.T01:CDS
GCAGGTTGATCGAAATTGAT+CGG 0.581191 2:+1041006 None:intergenic
ATATTGTCACATGTCAGTAA+TGG 0.592308 2:-1041533 MsG0280006378.01.T01:CDS
GAGCTTCGAATGGACAACCT+TGG 0.594522 2:-1041266 MsG0280006378.01.T01:CDS
ATTCTATTCGAATTATCCCA+CGG 0.597758 2:+1039984 None:intergenic
GTATAATCTCATTATCGCCA+AGG 0.600599 2:+1041249 None:intergenic
GGCAGAGATTCGATTTCTGT+AGG 0.601489 2:+1041575 None:intergenic
TTGAAGAGCATCATAGTCCC+CGG 0.602248 2:+1040539 None:intergenic
TTTGGGCACCCATCTTTGCA+AGG 0.608811 2:+1039607 None:intergenic
ATTTGTGATTCCATGTTTGG+AGG 0.609528 2:-1040184 MsG0280006378.01.T01:CDS
CCCTAAAATTGAATCTCTCG+AGG 0.610186 2:-1040919 MsG0280006378.01.T01:CDS
AGTTGTTGGGGCAAGAGTCG+AGG 0.613896 2:-1041102 MsG0280006378.01.T01:CDS
AGGCGGAGATTCGATTGCTG+TGG 0.622516 2:+1041595 None:intergenic
CAAGTGATAGCCATGAAGCA+AGG 0.624718 2:+1041312 None:intergenic
GGTTCAGATACATGCACCGT+GGG 0.628609 2:-1040000 MsG0280006378.01.T01:CDS
ACAATCAAGCTTATTCAAGA+GGG 0.630838 2:-1039718 MsG0280006378.01.T01:three_prime_UTR
CTGAAGAATCTTGATAACCA+TGG 0.631753 2:+1040071 None:intergenic
AGCTCCAGATGAGAGAGAGA+CGG 0.634676 2:+1041284 None:intergenic
CTGGAGTTTCTGTCAATGAG+GGG 0.644439 2:-1040645 MsG0280006378.01.T01:CDS
GATGACTTCCTTGCAAAGAT+GGG 0.646616 2:-1039615 MsG0280006378.01.T01:three_prime_UTR
TAGCTCCTCTAATCTCTCAA+CGG 0.648817 2:+1041364 None:intergenic
TGGAGTTTCTGTCAATGAGG+GGG 0.656210 2:-1040644 MsG0280006378.01.T01:CDS
CCTCATTGACAGAAACTCCA+GGG 0.657818 2:+1040647 None:intergenic
AATTGCAATATGCAACATCA+CGG 0.658583 2:+1041510 None:intergenic
AGGCCTGTCCAAATCTGACA+AGG 0.667331 2:-1041055 MsG0280006378.01.T01:CDS
AGAGATTCGATTTCTGTAGG+CGG 0.681192 2:+1041578 None:intergenic
CATTGGTGCAGCAGTCAATG+TGG 0.696850 2:-1041201 MsG0280006378.01.T01:CDS
CGGTTCAGATACATGCACCG+TGG 0.706295 2:-1040001 MsG0280006378.01.T01:CDS
GTGGAAACTCTAAAATTGTG+GGG 0.713865 2:-1041182 MsG0280006378.01.T01:CDS
TATGAAGGTTGAATTCACCG+GGG 0.788676 2:-1040556 MsG0280006378.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAAAAATGAATTTTA+TGG - Chr2:1039644-1039663 MsG0280006378.01.T01:three_prime_UTR 10.0%
!!! AGAAAAAAAATGAATTTTAT+GGG - Chr2:1039645-1039664 MsG0280006378.01.T01:three_prime_UTR 10.0%
!!! TCTAAAATGAAAATATTTTA+CGG + Chr2:1041044-1041063 None:intergenic 10.0%
!! AAAAAACATCATTTAAAAGA+TGG - Chr2:1039909-1039928 MsG0280006378.01.T01:three_prime_UTR 15.0%
!! AAATATGTGAAGTTTATTTA+TGG + Chr2:1041079-1041098 None:intergenic 15.0%
!! AAATCAACAAAATCAATTTC+TGG + Chr2:1043115-1043134 None:intergenic 20.0%
!! ATATTATAACCATGATTTCA+AGG - Chr2:1043260-1043279 MsG0280006378.01.T01:intron 20.0%
!! CTATTTGTATATTGCAAATT+TGG - Chr2:1041950-1041969 MsG0280006378.01.T01:intron 20.0%
!! TGTTTAAGTACAAAAGAATT+GGG - Chr2:1041782-1041801 MsG0280006378.01.T01:intron 20.0%
!! TTACTCATATATTGCTAATT+TGG - Chr2:1041721-1041740 MsG0280006378.01.T01:intron 20.0%
!! TTGTTTAAGTACAAAAGAAT+TGG - Chr2:1041781-1041800 MsG0280006378.01.T01:intron 20.0%
!!! AAAATGAAGATCTGAAATTA+GGG + Chr2:1041162-1041181 None:intergenic 20.0%
!!! AAATTTTCATTGCTATTTCA+CGG - Chr2:1039472-1039491 MsG0280006378.01.T01:three_prime_UTR 20.0%
!!! AAGATATCCATTTATTTTAC+AGG - Chr2:1043405-1043424 MsG0280006378.01.T01:intron 20.0%
!!! AATCCTAATGTTGATTTATA+AGG + Chr2:1040692-1040711 None:intergenic 20.0%
!!! ATGTTTTTTGAATTCAGATT+TGG - Chr2:1041505-1041524 MsG0280006378.01.T01:CDS 20.0%
!!! CAATATTGTTTTCCTAATTT+CGG + Chr2:1039602-1039621 None:intergenic 20.0%
! AAACGTTTATTTCCATTGAA+AGG - Chr2:1040268-1040287 MsG0280006378.01.T01:intron 25.0%
! AAAGAAAATTGAGCTTACAA+AGG + Chr2:1042896-1042915 None:intergenic 25.0%
! AATAAAACCTAGATTGGAAA+AGG + Chr2:1041410-1041429 None:intergenic 25.0%
! ACACCTTATAAATCAACATT+AGG - Chr2:1040686-1040705 MsG0280006378.01.T01:CDS 25.0%
! ATAGTGCTTAGATCTTAATT+GGG - Chr2:1041349-1041368 MsG0280006378.01.T01:CDS 25.0%
! GAATCAACCTGTAAAATAAA+TGG + Chr2:1043415-1043434 None:intergenic 25.0%
! GTGATAATTAAGATAGTTAG+AGG - Chr2:1041590-1041609 MsG0280006378.01.T01:CDS 25.0%
! TAAAGTATGGGAAAAATCTA+AGG - Chr2:1043527-1043546 MsG0280006378.01.T01:intron 25.0%
! TAAATTAGAAGAGAGAGAAA+GGG - Chr2:1039775-1039794 MsG0280006378.01.T01:three_prime_UTR 25.0%
! TATAGTGCTTAGATCTTAAT+TGG - Chr2:1041348-1041367 MsG0280006378.01.T01:CDS 25.0%
! TATCTAATTCAGAGAATGAA+GGG - Chr2:1043803-1043822 MsG0280006378.01.T01:intron 25.0%
! TCAAGATTATGTTACACTTT+CGG - Chr2:1043968-1043987 MsG0280006378.01.T01:intron 25.0%
! TGTACTTAAACAATACTAAC+CGG + Chr2:1041774-1041793 None:intergenic 25.0%
! TGTGAAACATCTTTATATGA+AGG - Chr2:1043051-1043070 MsG0280006378.01.T01:intron 25.0%
! TTATCTAATTCAGAGAATGA+AGG - Chr2:1043802-1043821 MsG0280006378.01.T01:intron 25.0%
! TTGAATCATTGGTAAAGTAT+GGG - Chr2:1043515-1043534 MsG0280006378.01.T01:intron 25.0%
!! AACAAAATCAATTTCTGGAA+AGG + Chr2:1043110-1043129 None:intergenic 25.0%
!! ACAAAATCAATTTCTGGAAA+GGG + Chr2:1043109-1043128 None:intergenic 25.0%
!! ATGAAAATATTTTACGGTGA+AGG + Chr2:1041038-1041057 None:intergenic 25.0%
!! ATTTTCTGTTCAGCATTTAA+TGG + Chr2:1043487-1043506 None:intergenic 25.0%
!! GAAAATGAAGATCTGAAATT+AGG + Chr2:1041163-1041182 None:intergenic 25.0%
!! TCTTTTCCATAAAAAATGAC+CGG - Chr2:1040898-1040917 MsG0280006378.01.T01:CDS 25.0%
!! TGAATTCTTCAAATTAGTCT+TGG + Chr2:1040204-1040223 None:intergenic 25.0%
!! TGTTAGAGTAATTTTATTCG+AGG - Chr2:1041634-1041653 MsG0280006378.01.T01:intron 25.0%
!! TTGATGCAATTTTTAACACA+GGG - Chr2:1043666-1043685 MsG0280006378.01.T01:intron 25.0%
!!! AATGTTGATTTATAAGGTGT+TGG + Chr2:1040686-1040705 None:intergenic 25.0%
!!! AGAGTATACATGATTGATTT+TGG - Chr2:1042941-1042960 MsG0280006378.01.T01:intron 25.0%
!!! GAATTCTTCAAATTAGTCTT+GGG + Chr2:1040203-1040222 None:intergenic 25.0%
!!! TGATAATTAGTTCACTTTTG+TGG - Chr2:1043729-1043748 MsG0280006378.01.T01:intron 25.0%
AAACAAGACAAAGAGAAACT+AGG + Chr2:1044119-1044138 None:intergenic 30.0%
AAACAATACTAACCGGTATA+TGG + Chr2:1041767-1041786 None:intergenic 30.0%
AACAAGACAAAGAGAAACTA+GGG + Chr2:1044118-1044137 None:intergenic 30.0%
AATTGCAATATGCAACATCA+CGG + Chr2:1042115-1042134 None:intergenic 30.0%
ACAACAAATGATCATTGCTT+TGG + Chr2:1044036-1044055 None:intergenic 30.0%
ACAATCAAGCTTATTCAAGA+GGG - Chr2:1043904-1043923 MsG0280006378.01.T01:intron 30.0%
ACTCAAAACTCAAATTGGAT+TGG + Chr2:1039558-1039577 None:intergenic 30.0%
AGTACAGTAAAACAATGTCT+TGG - Chr2:1043853-1043872 MsG0280006378.01.T01:intron 30.0%
AGTTTGAATTGCGTAAGATT+TGG + Chr2:1040720-1040739 None:intergenic 30.0%
ATATTGTCACATGTCAGTAA+TGG - Chr2:1042089-1042108 MsG0280006378.01.T01:intron 30.0%
ATCAAGATTCTTCAGATGAA+GGG - Chr2:1043559-1043578 MsG0280006378.01.T01:intron 30.0%
ATTCTATTCGAATTATCCCA+CGG + Chr2:1043641-1043660 None:intergenic 30.0%
CAACAAATGATCATTGCTTT+GGG + Chr2:1044035-1044054 None:intergenic 30.0%
CAGCTAAGTTAAAGCAAAAA+GGG + Chr2:1041238-1041257 None:intergenic 30.0%
CTAAATTAGAAGAGAGAGAA+AGG - Chr2:1039774-1039793 MsG0280006378.01.T01:three_prime_UTR 30.0%
CTTGAATCATTGGTAAAGTA+TGG - Chr2:1043514-1043533 MsG0280006378.01.T01:intron 30.0%
GAAAGAGTTTAATATACCAG+TGG + Chr2:1040524-1040543 None:intergenic 30.0%
GAACGATGATAGTATTACTT+TGG + Chr2:1040482-1040501 None:intergenic 30.0%
GAATTCAACAATTTACCAGT+TGG - Chr2:1040217-1040236 MsG0280006378.01.T01:intron 30.0%
GATCAAACTTATCCCTAAAT+GGG - Chr2:1042469-1042488 MsG0280006378.01.T01:intron 30.0%
GCAAAGAATAAAACCTAGAT+TGG + Chr2:1041416-1041435 None:intergenic 30.0%
GGAGAGCAATAAAAAAACAA+AGG + Chr2:1042849-1042868 None:intergenic 30.0%
GTTTGAATTGCGTAAGATTT+GGG + Chr2:1040719-1040738 None:intergenic 30.0%
TACAATCAAGCTTATTCAAG+AGG - Chr2:1043903-1043922 MsG0280006378.01.T01:intron 30.0%
TATATGAAGGTTGAATTCAC+CGG - Chr2:1043064-1043083 MsG0280006378.01.T01:intron 30.0%
TATCAAGATTCTTCAGATGA+AGG - Chr2:1043558-1043577 MsG0280006378.01.T01:intron 30.0%
TATGTTACACTTTCGGAAAA+GGG - Chr2:1043975-1043994 MsG0280006378.01.T01:intron 30.0%
TCACTTGTACCTTCAAATTA+AGG - Chr2:1039807-1039826 MsG0280006378.01.T01:three_prime_UTR 30.0%
TCATTTAAAAGATGGATCGA+TGG - Chr2:1039917-1039936 MsG0280006378.01.T01:three_prime_UTR 30.0%
TCCTGGAATTTACTAAAAAG+TGG - Chr2:1042866-1042885 MsG0280006378.01.T01:intron 30.0%
TCTTGAATAAGCTTGATTGT+AGG + Chr2:1043904-1043923 None:intergenic 30.0%
TCTTGGAAATTTATGCTACA+TGG - Chr2:1043870-1043889 MsG0280006378.01.T01:intron 30.0%
TGAAACTATTACTAACTTCG+TGG - Chr2:1040125-1040144 MsG0280006378.01.T01:CDS 30.0%
TGAAAGATTCTTCAAATGCT+TGG + Chr2:1042762-1042781 None:intergenic 30.0%
TGACATCATTGTGAAAAGAA+TGG - Chr2:1042229-1042248 MsG0280006378.01.T01:intron 30.0%
TGATCAAACTTATCCCTAAA+TGG - Chr2:1042468-1042487 MsG0280006378.01.T01:intron 30.0%
TGCAGTAAATGCAATTATTC+AGG - Chr2:1042547-1042566 MsG0280006378.01.T01:intron 30.0%
TTATGTTACACTTTCGGAAA+AGG - Chr2:1043974-1043993 MsG0280006378.01.T01:intron 30.0%
! AAAATATTTTACGGTGAAGG+AGG + Chr2:1041035-1041054 None:intergenic 30.0%
! AACCAAACCTTTGATTCTTT+TGG + Chr2:1043933-1043952 None:intergenic 30.0%
! ACTGTACTTTTGACAATCAT+GGG + Chr2:1043841-1043860 None:intergenic 30.0%
! ATCCTAAAAGTGTGTCTATT+TGG + Chr2:1039953-1039972 None:intergenic 30.0%
! ATTCAATTGCAAAGCTTTGA+TGG + Chr2:1039448-1039467 None:intergenic 30.0%
! ATTGTTTTCCTAATTTCGGA+TGG + Chr2:1039598-1039617 None:intergenic 30.0%
! CAATGATGTCAGAATTTTCA+CGG + Chr2:1042220-1042239 None:intergenic 30.0%
! CTTGATGCAATTTTTAACAC+AGG - Chr2:1043665-1043684 MsG0280006378.01.T01:intron 30.0%
! GAGGGTAATTTGAAGTAAAT+GGG - Chr2:1041548-1041567 MsG0280006378.01.T01:CDS 30.0%
! GATATTTTCAAACTCTTGAC+AGG - Chr2:1040376-1040395 MsG0280006378.01.T01:intron 30.0%
! GTATGATTTGAAGTCGAAAT+CGG + Chr2:1041929-1041948 None:intergenic 30.0%
! TACTGTACTTTTGACAATCA+TGG + Chr2:1043842-1043861 None:intergenic 30.0%
! TCCTAAAAGTGTGTCTATTT+GGG + Chr2:1039952-1039971 None:intergenic 30.0%
! TTACGTGATCCTTAATTTGA+AGG + Chr2:1039819-1039838 None:intergenic 30.0%
! TTACTTGTTAATTGCTTGCA+GGG - Chr2:1042918-1042937 MsG0280006378.01.T01:intron 30.0%
! TTTACTTGTTAATTGCTTGC+AGG - Chr2:1042917-1042936 MsG0280006378.01.T01:intron 30.0%
!! AAACTTATTTTCACTCTCCA+AGG - Chr2:1040579-1040598 MsG0280006378.01.T01:CDS 30.0%
!! AAATCTCTAAAACGTTAACG+CGG - Chr2:1040989-1041008 MsG0280006378.01.T01:CDS 30.0%
!! AACTTATTTTCACTCTCCAA+GGG - Chr2:1040580-1040599 MsG0280006378.01.T01:CDS 30.0%
!! ATGTGGAAACTCTAAAATTG+TGG - Chr2:1042438-1042457 MsG0280006378.01.T01:intron 30.0%
!! TGTGGAAACTCTAAAATTGT+GGG - Chr2:1042439-1042458 MsG0280006378.01.T01:intron 30.0%
!!! AATCCAATTTGAGTTTTGAG+TGG - Chr2:1039557-1039576 MsG0280006378.01.T01:three_prime_UTR 30.0%
!!! ACCACTTTTTAGTAAATTCC+AGG + Chr2:1042870-1042889 None:intergenic 30.0%
!!! AGGTAGTGTTGATCAAATTT+TGG - Chr2:1040396-1040415 MsG0280006378.01.T01:intron 30.0%
!!! ATCCAATTTGAGTTTTGAGT+GGG - Chr2:1039558-1039577 MsG0280006378.01.T01:three_prime_UTR 30.0%
!!! GATTTTTTGATGAGATTTGC+CGG - Chr2:1043601-1043620 MsG0280006378.01.T01:intron 30.0%
!!! TTGTTTTTTTATTGCTCTCC+TGG - Chr2:1042849-1042868 MsG0280006378.01.T01:intron 30.0%
AAATGGGAGCTAAACTCAAA+GGG - Chr2:1041564-1041583 MsG0280006378.01.T01:CDS 35.0%
AACCCACTCAAAACTCAAAT+TGG + Chr2:1039563-1039582 None:intergenic 35.0%
AATAAGCTTGATTGTAGGCA+TGG + Chr2:1043899-1043918 None:intergenic 35.0%
AATACTAACCGGTATATGGA+CGG + Chr2:1041763-1041782 None:intergenic 35.0%
AATGAGCACTCTTGAATCAT+TGG - Chr2:1043504-1043523 MsG0280006378.01.T01:intron 35.0%
ATATCTTCTAAGTCAACCAC+TGG - Chr2:1040505-1040524 MsG0280006378.01.T01:CDS 35.0%
ATATGAAGGTTGAATTCACC+GGG - Chr2:1043065-1043084 MsG0280006378.01.T01:intron 35.0%
ATGTACTGAAGTATGACATC+AGG + Chr2:1042071-1042090 None:intergenic 35.0%
ATTCATCGTAGTGTTTGCAT+AGG - Chr2:1040240-1040259 MsG0280006378.01.T01:intron 35.0%
ATTCTTATCCAACACGTTGA+TGG - Chr2:1040171-1040190 MsG0280006378.01.T01:CDS 35.0%
CAAGCTTTCTTTGACCAATA+AGG + Chr2:1040354-1040373 None:intergenic 35.0%
CAATGCAATCCAACTTTGAT+GGG + Chr2:1042406-1042425 None:intergenic 35.0%
CCAGCTAAGTTAAAGCAAAA+AGG + Chr2:1041239-1041258 None:intergenic 35.0%
CCTTACAAAACCAACCTTAT+TGG - Chr2:1040337-1040356 MsG0280006378.01.T01:intron 35.0%
CGTTTATTTCCATTGAAAGG+TGG - Chr2:1040271-1040290 MsG0280006378.01.T01:intron 35.0%
CTTCAAGGATCCTAAGATTA+TGG + Chr2:1042502-1042521 None:intergenic 35.0%
CTTTCTTTGACCAATAAGGT+TGG + Chr2:1040350-1040369 None:intergenic 35.0%
GAACAGTGGTATTTATCACT+CGG + Chr2:1040765-1040784 None:intergenic 35.0%
GACCAAAAGAATCAAAGGTT+TGG - Chr2:1043928-1043947 MsG0280006378.01.T01:intron 35.0%
GTATAATCTCATTATCGCCA+AGG + Chr2:1042376-1042395 None:intergenic 35.0%
TAAATGGGAGCTAAACTCAA+AGG - Chr2:1041563-1041582 MsG0280006378.01.T01:CDS 35.0%
TATGGAACGTTTCCCATTTA+GGG + Chr2:1042484-1042503 None:intergenic 35.0%
TATTCTCAAAGACCAACTTG+AGG + Chr2:1039503-1039522 None:intergenic 35.0%
TATTTATCACTCGGTCTAGT+TGG + Chr2:1040756-1040775 None:intergenic 35.0%
TATTTGATCCGTCCATATAC+CGG - Chr2:1041752-1041771 MsG0280006378.01.T01:intron 35.0%
TCTTCAAATGCTTGGTTTCA+GGG + Chr2:1042754-1042773 None:intergenic 35.0%
TGAACCCAAAACTTGAACAT+TGG + Chr2:1041309-1041328 None:intergenic 35.0%
TGAATTCAGATTTGGCGTTT+GGG - Chr2:1041513-1041532 MsG0280006378.01.T01:CDS 35.0%
TTAAAAGATGGATCGATGGT+TGG - Chr2:1039921-1039940 MsG0280006378.01.T01:three_prime_UTR 35.0%
TTAGGATCCTTGAAGTTGTT+GGG - Chr2:1042507-1042526 MsG0280006378.01.T01:intron 35.0%
TTATGGAACGTTTCCCATTT+AGG + Chr2:1042485-1042504 None:intergenic 35.0%
TTCTTCAAATGCTTGGTTTC+AGG + Chr2:1042755-1042774 None:intergenic 35.0%
TTGAATTCAGATTTGGCGTT+TGG - Chr2:1041512-1041531 MsG0280006378.01.T01:CDS 35.0%
TTTCCATAAAAAATGACCGG+TGG - Chr2:1040901-1040920 MsG0280006378.01.T01:CDS 35.0%
! AAACTCACCTTTTCCAATCT+AGG - Chr2:1041400-1041419 MsG0280006378.01.T01:CDS 35.0%
! AAGCTACACACTATAGCTTT+TGG - Chr2:1043283-1043302 MsG0280006378.01.T01:intron 35.0%
! AAGCTGGATTTTTATGGTCT+TGG - Chr2:1042656-1042675 MsG0280006378.01.T01:intron 35.0%
! ACCCAAATAGACACACTTTT+AGG - Chr2:1039948-1039967 MsG0280006378.01.T01:three_prime_UTR 35.0%
! ACCTCGAGAGATTCAATTTT+AGG + Chr2:1042707-1042726 None:intergenic 35.0%
! ACTTTTGACAATCATGGGAA+AGG + Chr2:1043836-1043855 None:intergenic 35.0%
! AGCTGGATTTTTATGGTCTT+GGG - Chr2:1042657-1042676 MsG0280006378.01.T01:intron 35.0%
! CCTCGAGAGATTCAATTTTA+GGG + Chr2:1042706-1042725 None:intergenic 35.0%
! CTCGAGAGATTCAATTTTAG+GGG + Chr2:1042705-1042724 None:intergenic 35.0%
! CTGAAGAATCTTGATAACCA+TGG + Chr2:1043554-1043573 None:intergenic 35.0%
! GAAGATCTGAAATTAGGGTT+AGG + Chr2:1041157-1041176 None:intergenic 35.0%
! GGAGGGTAATTTGAAGTAAA+TGG - Chr2:1041547-1041566 MsG0280006378.01.T01:CDS 35.0%
! TACACACTATAGCTTTTGGA+AGG - Chr2:1043287-1043306 MsG0280006378.01.T01:intron 35.0%
!! AATCTCTAAAACGTTAACGC+GGG - Chr2:1040990-1041009 MsG0280006378.01.T01:CDS 35.0%
!! CATGTTTTAGACTGTTCTTC+TGG + Chr2:1043201-1043220 None:intergenic 35.0%
!! CCTTTTTGCTTTAACTTAGC+TGG - Chr2:1041236-1041255 MsG0280006378.01.T01:CDS 35.0%
!! GCATCCAATGTTCAAGTTTT+GGG - Chr2:1041302-1041321 MsG0280006378.01.T01:CDS 35.0%
!! GTGGAAACTCTAAAATTGTG+GGG - Chr2:1042440-1042459 MsG0280006378.01.T01:intron 35.0%
!! GTTGATTTATAAGGTGTTGG+TGG + Chr2:1040683-1040702 None:intergenic 35.0%
!! TGCATCCAATGTTCAAGTTT+TGG - Chr2:1041301-1041320 MsG0280006378.01.T01:CDS 35.0%
!! TTCGTACTGATTTCCAGTTA+CGG - Chr2:1043692-1043711 MsG0280006378.01.T01:intron 35.0%
!!! CCAATAAGGTTGGTTTTGTA+AGG + Chr2:1040340-1040359 None:intergenic 35.0%
AACACTACGATGAATCCAAC+TGG + Chr2:1040235-1040254 None:intergenic 40.0%
AATTCAGATTTGGCGTTTGG+GGG - Chr2:1041515-1041534 MsG0280006378.01.T01:CDS 40.0%
AATTGGGAGCTAAACTGAGA+AGG - Chr2:1041798-1041817 MsG0280006378.01.T01:intron 40.0%
ACAAGGCTGTAGTTGGATTA+GGG - Chr2:1042727-1042746 MsG0280006378.01.T01:intron 40.0%
ACATGAAAGCCCATCAAAGT+TGG - Chr2:1042394-1042413 MsG0280006378.01.T01:intron 40.0%
AGAGATTCGATTTCTGTAGG+CGG + Chr2:1042047-1042066 None:intergenic 40.0%
AGGGAGACCAAAAGAATCAA+AGG - Chr2:1043923-1043942 MsG0280006378.01.T01:intron 40.0%
AGTAGCAACCTTGTCAGATT+TGG + Chr2:1042578-1042597 None:intergenic 40.0%
ATATCAAACTTGCGCAGCTT+GGG + Chr2:1043151-1043170 None:intergenic 40.0%
ATTCTGATGCTTGTGCATGA+CGG - Chr2:1041901-1041920 MsG0280006378.01.T01:intron 40.0%
ATTGAATCTCTCGAGGTACA+AGG - Chr2:1042710-1042729 MsG0280006378.01.T01:intron 40.0%
ATTGGGAGCTAAACTGAGAA+GGG - Chr2:1041799-1041818 MsG0280006378.01.T01:intron 40.0%
CATGACGAAATGCTTCTTCA+TGG + Chr2:1040428-1040447 None:intergenic 40.0%
CCAATGCAATCCAACTTTGA+TGG + Chr2:1042407-1042426 None:intergenic 40.0%
CCATCAAAGTTGGATTGCAT+TGG - Chr2:1042404-1042423 MsG0280006378.01.T01:intron 40.0%
CCCTAAAATTGAATCTCTCG+AGG - Chr2:1042703-1042722 MsG0280006378.01.T01:intron 40.0%
CTGTGTCGAAGAAAACAAAC+TGG - Chr2:1043312-1043331 MsG0280006378.01.T01:intron 40.0%
CTTAGGATCCTTGAAGTTGT+TGG - Chr2:1042506-1042525 MsG0280006378.01.T01:intron 40.0%
CTTTCAATTTCCAACAGTGC+AGG - Chr2:1042776-1042795 MsG0280006378.01.T01:intron 40.0%
GAATTCAGATTTGGCGTTTG+GGG - Chr2:1041514-1041533 MsG0280006378.01.T01:CDS 40.0%
GATGACTTCCTTGCAAAGAT+GGG - Chr2:1044007-1044026 MsG0280006378.01.T01:intron 40.0%
GCCTTAAAAACTTATGCCCA+AGG + Chr2:1044089-1044108 None:intergenic 40.0%
GGGAAACGTTCCATAATCTT+AGG - Chr2:1042489-1042508 MsG0280006378.01.T01:intron 40.0%
GTGTAGCTTCCTTGAAATCA+TGG + Chr2:1043272-1043291 None:intergenic 40.0%
TACAAGGCTGTAGTTGGATT+AGG - Chr2:1042726-1042745 MsG0280006378.01.T01:intron 40.0%
TAGCTCCTCTAATCTCTCAA+CGG + Chr2:1042261-1042280 None:intergenic 40.0%
TAGGATCCTTGAAGTTGTTG+GGG - Chr2:1042508-1042527 MsG0280006378.01.T01:intron 40.0%
TATGAAGGTTGAATTCACCG+GGG - Chr2:1043066-1043085 MsG0280006378.01.T01:intron 40.0%
TGAAACGTTACACGATGGTT+AGG - Chr2:1040025-1040044 MsG0280006378.01.T01:CDS 40.0%
TGCGAGAGTTAGATGATTTG+AGG - Chr2:1041868-1041887 MsG0280006378.01.T01:intron 40.0%
TGGAAGAACCATCCGAAATT+AGG - Chr2:1039587-1039606 MsG0280006378.01.T01:three_prime_UTR 40.0%
TGGGAAAAATCTAAGGACCA+TGG - Chr2:1043534-1043553 MsG0280006378.01.T01:intron 40.0%
TGTGCAATCGAGATTCAACT+AGG + Chr2:1040620-1040639 None:intergenic 40.0%
TTATTGCTTGTCGATGCCTT+GGG - Chr2:1044070-1044089 MsG0280006378.01.T01:intron 40.0%
TTCACGGTAAATCCTCAAGT+TGG - Chr2:1039488-1039507 MsG0280006378.01.T01:three_prime_UTR 40.0%
TTTATTGCTTGTCGATGCCT+TGG - Chr2:1044069-1044088 MsG0280006378.01.T01:intron 40.0%
! ATATTTTACGGTGAAGGAGG+AGG + Chr2:1041032-1041051 None:intergenic 40.0%
! ATGTCAGAATTTTCACGGTG+AGG + Chr2:1042215-1042234 None:intergenic 40.0%
! CAGTGCAAGCTGGATTTTTA+TGG - Chr2:1042650-1042669 MsG0280006378.01.T01:intron 40.0%
! GCAATTGTGTTTCTAAGCGA+TGG - Chr2:1042129-1042148 MsG0280006378.01.T01:intron 40.0%
! GCCTTGGGCATAAGTTTTTA+AGG - Chr2:1044085-1044104 MsG0280006378.01.T01:intron 40.0%
! GCTTTTCTTCCACCTTTCAA+TGG + Chr2:1040283-1040302 None:intergenic 40.0%
! TATTTTACGGTGAAGGAGGA+GGG + Chr2:1041031-1041050 None:intergenic 40.0%
! TCTTTGAGAATAGTCGCGTA+TGG - Chr2:1039511-1039530 MsG0280006378.01.T01:three_prime_UTR 40.0%
!! AAGGCATCGACAAGCAATAA+AGG + Chr2:1044070-1044089 None:intergenic 40.0%
!! CAAATTGGATTGGTCGTTCA+TGG + Chr2:1039548-1039567 None:intergenic 40.0%
!! CAGTTTGTTTTCTTCGACAC+AGG + Chr2:1043314-1043333 None:intergenic 40.0%
!! GAGAGATTCAATTTTAGGGG+AGG + Chr2:1042702-1042721 None:intergenic 40.0%
!! GCAGGTTGATCGAAATTGAT+CGG + Chr2:1042619-1042638 None:intergenic 40.0%
!! TTTGGGGGTGTTAATTTGGA+GGG - Chr2:1041530-1041549 MsG0280006378.01.T01:CDS 40.0%
!!! AGTGCGTAAGTTTTGAACAG+TGG + Chr2:1040779-1040798 None:intergenic 40.0%
!!! CTTCCACCGGTCATTTTTTA+TGG + Chr2:1040907-1040926 None:intergenic 40.0%
!!! TTCGATCAACCTGCCATTTT+TGG - Chr2:1042625-1042644 MsG0280006378.01.T01:intron 40.0%
AGCTTGCACTGCTCCAAAAA+TGG + Chr2:1042641-1042660 None:intergenic 45.0%
AGGGTTAGGTTACAAGCTCT+TGG + Chr2:1041143-1041162 None:intergenic 45.0%
AGTGAAGTGCGCGTGTAAAA+TGG - Chr2:1040930-1040949 MsG0280006378.01.T01:CDS 45.0%
ATCAGCCGTTGAGAGATTAG+AGG - Chr2:1042253-1042272 MsG0280006378.01.T01:intron 45.0%
ATGAAGACCTCCTCCAAACA+TGG + Chr2:1043451-1043470 None:intergenic 45.0%
CAACCTTGTCAGATTTGGAC+AGG + Chr2:1042573-1042592 None:intergenic 45.0%
CAAGGCCATACACAGAGAAA+GGG + Chr2:1042295-1042314 None:intergenic 45.0%
CAAGTGATAGCCATGAAGCA+AGG + Chr2:1042313-1042332 None:intergenic 45.0%
CCTCATTGACAGAAACTCCA+GGG + Chr2:1042978-1042997 None:intergenic 45.0%
CCTGGAGTTTCTGTCAATGA+GGG - Chr2:1042976-1042995 MsG0280006378.01.T01:intron 45.0%
CGATGACTTCCTTGCAAAGA+TGG - Chr2:1044006-1044025 MsG0280006378.01.T01:intron 45.0%
CGTGTAACGTTTCAACCCAA+GGG + Chr2:1040019-1040038 None:intergenic 45.0%
CTGCGCAAGTTTGATATCCA+TGG - Chr2:1043154-1043173 MsG0280006378.01.T01:intron 45.0%
CTGGAGTTTCTGTCAATGAG+GGG - Chr2:1042977-1042996 MsG0280006378.01.T01:intron 45.0%
GATATCAAACTTGCGCAGCT+TGG + Chr2:1043152-1043171 None:intergenic 45.0%
GGCAGAGATTCGATTTCTGT+AGG + Chr2:1042050-1042069 None:intergenic 45.0%
TACTGCCCTTTCTCTGTGTA+TGG - Chr2:1042287-1042306 MsG0280006378.01.T01:intron 45.0%
TCCTCCAAACATGGAATCAC+AGG + Chr2:1043442-1043461 None:intergenic 45.0%
TCGTGTAACGTTTCAACCCA+AGG + Chr2:1040020-1040039 None:intergenic 45.0%
TGGAGTTTCTGTCAATGAGG+GGG - Chr2:1042978-1042997 MsG0280006378.01.T01:intron 45.0%
TGTGATTCCATGTTTGGAGG+AGG - Chr2:1043441-1043460 MsG0280006378.01.T01:intron 45.0%
TTCAGAAGTCTAGCCGTAAC+TGG + Chr2:1043708-1043727 None:intergenic 45.0%
TTGCAAGGAAGTCATCGCAT+TGG + Chr2:1044003-1044022 None:intergenic 45.0%
TTGCTACTGCTTGGATGTGA+AGG - Chr2:1042590-1042609 MsG0280006378.01.T01:intron 45.0%
! AAGCTCTTGGTGTGTGTTGT+TGG + Chr2:1041130-1041149 None:intergenic 45.0%
! AGCTCTTGGTGTGTGTTGTT+GGG + Chr2:1041129-1041148 None:intergenic 45.0%
! GGTTGAACTCATTTTGCCCT+TGG + Chr2:1040599-1040618 None:intergenic 45.0%
! TGGGTTGAAACGTTACACGA+TGG - Chr2:1040020-1040039 MsG0280006378.01.T01:CDS 45.0%
!! GTTTGGGGGTGTTAATTTGG+AGG - Chr2:1041529-1041548 MsG0280006378.01.T01:CDS 45.0%
!! TTGAAGAGCATCATAGTCCC+CGG + Chr2:1043086-1043105 None:intergenic 45.0%
!! TTTTGGAAACCTTGCATCCC+TGG - Chr2:1042958-1042977 MsG0280006378.01.T01:intron 45.0%
!!! ATTTTTGGAGCAGTGCAAGC+TGG - Chr2:1042640-1042659 MsG0280006378.01.T01:intron 45.0%
!!! GAGTTTTGAGTGGGTTCTCA+TGG - Chr2:1039567-1039586 MsG0280006378.01.T01:three_prime_UTR 45.0%
!!! TTGGTTTTGTAAGGCCTCCA+CGG + Chr2:1040331-1040350 None:intergenic 45.0%
AAGCGCTATGTACGAACACC+TGG - Chr2:1040299-1040318 MsG0280006378.01.T01:intron 50.0%
ACAGAAACTCCAGGGATGCA+AGG + Chr2:1042970-1042989 None:intergenic 50.0%
AGCTCCAGATGAGAGAGAGA+CGG + Chr2:1042341-1042360 None:intergenic 50.0%
AGGCCTGTCCAAATCTGACA+AGG - Chr2:1042567-1042586 MsG0280006378.01.T01:intron 50.0%
CACGGTGCATGTATCTGAAC+CGG + Chr2:1043623-1043642 None:intergenic 50.0%
CATTCGACTACCTGCACTGT+TGG + Chr2:1042789-1042808 None:intergenic 50.0%
CATTGGTGCAGCAGTCAATG+TGG - Chr2:1042421-1042440 MsG0280006378.01.T01:intron 50.0%
CCCTCATTGACAGAAACTCC+AGG + Chr2:1042979-1042998 None:intergenic 50.0%
CCCTGGAGTTTCTGTCAATG+AGG - Chr2:1042975-1042994 MsG0280006378.01.T01:intron 50.0%
CGACTGCTGCAAAAATTGCG+AGG + Chr2:1040459-1040478 None:intergenic 50.0%
CTCTTGCCCCAACAACTTCA+AGG + Chr2:1042517-1042536 None:intergenic 50.0%
CTGACAAGGTTGCTACTGCT+TGG - Chr2:1042581-1042600 MsG0280006378.01.T01:intron 50.0%
CTGGCATAGTGCTGCAAACA+TGG + Chr2:1043182-1043201 None:intergenic 50.0%
GAGCTTCGAATGGACAACCT+TGG - Chr2:1042356-1042375 MsG0280006378.01.T01:intron 50.0%
GCAAGGCCATACACAGAGAA+AGG + Chr2:1042296-1042315 None:intergenic 50.0%
GCACTTCACTACACTTCCAC+CGG + Chr2:1040920-1040939 None:intergenic 50.0%
GCTTCATGGCTATCACTTGC+AGG - Chr2:1042314-1042333 MsG0280006378.01.T01:intron 50.0%
GGATACAGCCATCAACGTGT+TGG + Chr2:1040182-1040201 None:intergenic 50.0%
GGTTCAGATACATGCACCGT+GGG - Chr2:1043622-1043641 MsG0280006378.01.T01:intron 50.0%
TCGAGGTACAAGGCTGTAGT+TGG - Chr2:1042720-1042739 MsG0280006378.01.T01:intron 50.0%
TGCACTGCTCCAAAAATGGC+AGG + Chr2:1042637-1042656 None:intergenic 50.0%
TGTCAATGAGGGGGATACAG+TGG - Chr2:1042987-1043006 MsG0280006378.01.T01:intron 50.0%
TTGACCACTTCGTCACCCTT+GGG - Chr2:1040001-1040020 MsG0280006378.01.T01:CDS 50.0%
TTTGGGCACCCATCTTTGCA+AGG + Chr2:1044018-1044037 None:intergenic 50.0%
! CTCTCATCTGGAGCTTCGAA+TGG - Chr2:1042346-1042365 MsG0280006378.01.T01:intron 50.0%
! CTGTGTATGGCCTTGCTTCA+TGG - Chr2:1042300-1042319 MsG0280006378.01.T01:intron 50.0%
!! GGCGTTTGGGGGTGTTAATT+TGG - Chr2:1041526-1041545 MsG0280006378.01.T01:CDS 50.0%
!!! TGGTTTTGTAAGGCCTCCAC+GGG + Chr2:1040330-1040349 None:intergenic 50.0%
AAGTCGCTTATGCCGCCTGA+AGG - Chr2:1039974-1039993 MsG0280006378.01.T01:three_prime_UTR 55.0%
AGGCGGAGATTCGATTGCTG+TGG + Chr2:1042030-1042049 None:intergenic 55.0%
AGGTCCGTCTCTCTCTCATC+TGG - Chr2:1042334-1042353 MsG0280006378.01.T01:intron 55.0%
AGTTGTTGGGGCAAGAGTCG+AGG - Chr2:1042520-1042539 MsG0280006378.01.T01:intron 55.0%
CAAACTTGCGCAGCTTGGGA+TGG + Chr2:1043147-1043166 None:intergenic 55.0%
CGGTTCAGATACATGCACCG+TGG - Chr2:1043621-1043640 MsG0280006378.01.T01:intron 55.0%
GAAGTGGTCAACCCACCTTC+AGG + Chr2:1039992-1040011 None:intergenic 55.0%
GAGGGGGATACAGTGGTGTT+GGG - Chr2:1042994-1043013 MsG0280006378.01.T01:intron 55.0%
GTGCTGCAAACATGGCTCCA+TGG + Chr2:1043174-1043193 None:intergenic 55.0%
GTTGACCACTTCGTCACCCT+TGG - Chr2:1040000-1040019 MsG0280006378.01.T01:CDS 55.0%
TCAACCCAAGGGTGACGAAG+TGG + Chr2:1040008-1040027 None:intergenic 55.0%
TGAGGGGGATACAGTGGTGT+TGG - Chr2:1042993-1043012 MsG0280006378.01.T01:intron 55.0%
!! GGTTTTGTAAGGCCTCCACG+GGG + Chr2:1040329-1040348 None:intergenic 55.0%
CGCTTATGCCGCCTGAAGGT+GGG - Chr2:1039978-1039997 MsG0280006378.01.T01:exon 60.0%
GTGGTCAACCCACCTTCAGG+CGG + Chr2:1039989-1040008 None:intergenic 60.0%
TCGCTTATGCCGCCTGAAGG+TGG - Chr2:1039977-1039996 MsG0280006378.01.T01:exon 60.0%
ACACCTGGATAGCCCCGTGG+AGG - Chr2:1040314-1040333 MsG0280006378.01.T01:intron 65.0%
CGAACACCTGGATAGCCCCG+TGG - Chr2:1040311-1040330 MsG0280006378.01.T01:intron 65.0%
AGGCCTCCACGGGGCTATCC+AGG + Chr2:1040320-1040339 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1039441 1044203 1039441 ID=MsG0280006378.01;Name=MsG0280006378.01
Chr2 mRNA 1039441 1044203 1039441 ID=MsG0280006378.01.T01;Parent=MsG0280006378.01;Name=MsG0280006378.01.T01;_AED=0.23;_eAED=0.24;_QI=0|0.66|0.5|0.75|0.66|0.5|4|555|448
Chr2 exon 1039441 1040217 1039441 ID=MsG0280006378.01.T01:exon:1045;Parent=MsG0280006378.01.T01
Chr2 exon 1040425 1040705 1040425 ID=MsG0280006378.01.T01:exon:1044;Parent=MsG0280006378.01.T01
Chr2 exon 1040847 1041637 1040847 ID=MsG0280006378.01.T01:exon:1043;Parent=MsG0280006378.01.T01
Chr2 exon 1044151 1044203 1044151 ID=MsG0280006378.01.T01:exon:1042;Parent=MsG0280006378.01.T01
Chr2 CDS 1044151 1044203 1044151 ID=MsG0280006378.01.T01:cds;Parent=MsG0280006378.01.T01
Chr2 CDS 1040847 1041637 1040847 ID=MsG0280006378.01.T01:cds;Parent=MsG0280006378.01.T01
Chr2 CDS 1040425 1040705 1040425 ID=MsG0280006378.01.T01:cds;Parent=MsG0280006378.01.T01
Chr2 CDS 1039996 1040217 1039996 ID=MsG0280006378.01.T01:cds;Parent=MsG0280006378.01.T01
Chr2 three_prime_UTR 1039441 1039995 1039441 ID=MsG0280006378.01.T01:three_prime_utr;Parent=MsG0280006378.01.T01
Gene Sequence

>MsG0280006378.01.T01

ATGTCCATCAAAGCTTTGCAATTGAATTCGAAAATTTTCATTGCTATTTCACGCTATTTATTTCAATTATTGTCCACAGCAATCGAATCTCCGCCTACAGAAATCGAATCTCTGCCTGATGTCATACTTCAGTACATATTGTCACATGTCAGTAATGGCCGTGATGTTGCATATTGCAATTGTGTTTCTAAGCGATGGAAGAACTCAATGACTTGTATAAGAAGTCTCTATTTTACTCGCAATGCGTTTGATAACGCTCCTCACCGTGAAAATTCTGACATCATTGTGAAAAGAATGGTATCAGCCGTTGAGAGATTAGAGGAGCTAGTTGTGTACTGCCCTTTCTCTGTGTATGGCCTTGCTTCATGGCTATCACTTGCAGGTCCGTCTCTCTCTCATCTGGAGCTTCGAATGGACAACCTTGGCGATAATGAGATTATACATGAAAGCCCATCAAAGTTGGATTGCATTGGTGCAGCAGTCAATGTGGAAACTCTAAAATTGTGGGGTGTCTTGATCAAACTTATCCCTAAATGGGAAACGTTCCATAATCTTAGGATCCTTGAAGTTGTTGGGGCAAGAGTCGAGGATGCTGCAGTAAATGCAATTATTCAGGCCTGTCCAAATCTGACAAGGTTGCTACTGCTTGGATGTGAAGGTGTCCGATCAATTTCGATCAACCTGCCATTTTTGGAGCAGTGCAAGCTGGATTTTTATGGTCTTGGGAACTGTTCGCTTTCACTGACCTCCCCTAAAATTGAATCTCTCGAGGTACAAGGCTGTAGTTGGATTAGGGTCCCTGAAACCAAGCATTTGAAGAATCTTTCAATTTCCAACAGTGCAGGGAGAGTATACATGATTGATTTTGGAAACCTTGCATCCCTGGAGTTTCTGTCAATGAGGGGGATACAGTGGTGTTGGGATGCAATCTGTAAAATGCTGAAATTGTCAAGTGATGTGAAACATCTTTATATGAAGGTTGAATTCACCGGGGACTATGATGCTCTTCAACCCTTTCCAGAAATTGATTTTGTTGATTTCTTCAACAGCCATCCCAAGCTGCGCAAGTTTGATATCCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGTCTAAAACATGTTGATTCTGAATTTGTGATTCCATGTTTGGAGGAGGTCTTCATCACTGTGAGATCACCATTAAATGCTGAACAGAAAATGAGCACTCTTGAATCATTGGTAAAGTATGGGAAAAATCTAAGGACCATGGTTATCAAGATTCTTCAGATGAAGGGTTCACATAACAGTGCTGATGATTTTTTGATGAGATTTGCCGGTTCAGATACATGCACCGTGGGATAA
Protein sequence

>MsG0280006378.01.T01

MSIKALQLNSKIFIAISRYLFQLLSTAIESPPTEIESLPDVILQYILSHVSNGRDVAYCNCVSKRWKNSMTCIRSLYFTRNAFDNAPHRENSDIIVKRMVSAVERLEELVVYCPFSVYGLASWLSLAGPSLSHLELRMDNLGDNEIIHESPSKLDCIGAAVNVETLKLWGVLIKLIPKWETFHNLRILEVVGARVEDAAVNAIIQACPNLTRLLLLGCEGVRSISINLPFLEQCKLDFYGLGNCSLSLTSPKIESLEVQGCSWIRVPETKHLKNLSISNSAGRVYMIDFGNLASLEFLSMRGIQWCWDAICKMLKLSSDVKHLYMKVEFTGDYDALQPFPEIDFVDFFNSHPKLRKFDIHGAMFAALCQKNSLKHVDSEFVIPCLEEVFITVRSPLNAEQKMSTLESLVKYGKNLRTMVIKILQMKGSHNSADDFLMRFAGSDTCTVG*