AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020398.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020398.01.T01 MTR_4g050060 90.960 719 12 3 1 719 1 666 0.0 1313
MsG0480020398.01.T01 MTR_2g087880 62.709 716 203 11 1 713 1 655 0.0 828
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020398.01.T01 AT2G32590 54.746 727 257 12 1 712 1 670 0.0 695

Find 175 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGTCTGCCTAGGTTTC+AGG 0.092734 4:+40518530 None:intergenic
TTGCAAGGCGGTCTGCTTTC+AGG 0.102056 4:+40518406 None:intergenic
CTGAAATATCAGGTTCATTT+TGG 0.156942 4:+40519351 None:intergenic
AGTATCTTTCAAGAATTTAT+TGG 0.201745 4:-40517345 MsG0480020398.01.T01:CDS
TCATCTTACTGATATTATTA+AGG 0.247167 4:-40521392 MsG0480020398.01.T01:CDS
TGTAACCTTGCTCAGCTTCT+TGG 0.257914 4:+40520107 None:intergenic
TGGGTTCTTATTCTTGAGTC+TGG 0.268269 4:-40518743 MsG0480020398.01.T01:CDS
CAAGCTCTTCCGCTGAATTC+TGG 0.278212 4:+40519090 None:intergenic
TTCAGGGAGAAGTAATGTTT+TGG 0.290998 4:+40518423 None:intergenic
CCCACCAGCCCCTTCATCTT+AGG 0.303659 4:-40521711 MsG0480020398.01.T01:CDS
AAGTGCTAAAAGTTACTCTT+TGG 0.303784 4:-40517652 MsG0480020398.01.T01:CDS
CTTTGTCTGCCTAGGTTTCA+GGG 0.320733 4:+40518531 None:intergenic
ATGAATAATCTCGGTGTATA+TGG 0.321638 4:-40519428 MsG0480020398.01.T01:CDS
TGTTAAGCTTCCTCCTGTTC+AGG 0.321639 4:-40517612 MsG0480020398.01.T01:intron
TGTTCTTTCTTTAGTGTCTT+GGG 0.322608 4:-40518195 MsG0480020398.01.T01:intron
TGGCGAGCTTTATACAATTC+TGG 0.325986 4:+40521547 None:intergenic
TGTCAAGCTATTTCTGCTTC+CGG 0.326664 4:-40518341 MsG0480020398.01.T01:CDS
CGTCAAATTTCGCAGTTGTC+TGG 0.327918 4:+40519474 None:intergenic
GACTGGATGCGTGCGGCAAC+AGG 0.335269 4:+40521735 None:intergenic
ATGTTCTTTCTTTAGTGTCT+TGG 0.342141 4:-40518196 MsG0480020398.01.T01:intron
AGAACGATCCATTCCCTTCT+TGG 0.343798 4:-40517998 MsG0480020398.01.T01:CDS
GAGGGTGTTAATGTTGAAAA+TGG 0.347394 4:-40519791 MsG0480020398.01.T01:CDS
TTCTTTAGTGTCTTGGGAGG+AGG 0.350205 4:-40518189 MsG0480020398.01.T01:intron
CACTTGAACATCAACCTGTT+TGG 0.351903 4:+40517670 None:intergenic
CAAGAAAGAGACAGATAAAA+AGG 0.352537 4:-40519756 MsG0480020398.01.T01:intron
CATCCAAGTTGGGGAAGCTT+TGG 0.353845 4:+40517216 None:intergenic
TGGCTTTCCATACACTTTGC+AGG 0.360381 4:+40519371 None:intergenic
TGAAGGGGCTGGTGGGAGAC+TGG 0.361253 4:+40521718 None:intergenic
GGCAACAGGGAGACGGAGTT+TGG 0.363054 4:+40521749 None:intergenic
GGCTGGTAGTGGCAGTCCTC+TGG 0.378165 4:+40518373 None:intergenic
CTTCATATGTCTACTGCATT+TGG 0.388124 4:-40517261 MsG0480020398.01.T01:CDS
TTTAGATTTCACAAATTCTC+TGG 0.397573 4:-40518485 MsG0480020398.01.T01:CDS
GTGCTTGAGCGCGTTCGAGC+TGG 0.401468 4:+40521676 None:intergenic
CATGGGCAGGCCCTGATCAT+TGG 0.402102 4:-40518699 MsG0480020398.01.T01:CDS
TCGCAGTTGTCTGGCGATAG+AGG 0.402631 4:+40519483 None:intergenic
TTATTCACTCAGGGTGGATT+CGG 0.402739 4:-40520176 MsG0480020398.01.T01:CDS
ATTATTCATTAAAAGACCTT+TGG 0.404876 4:+40519442 None:intergenic
TCACCACATTGAATGTGTTT+CGG 0.405140 4:+40519251 None:intergenic
CAACCAGTCATTGCTGATCT+AGG 0.406386 4:-40518987 MsG0480020398.01.T01:CDS
TTAGATTGTATTTCAAGCTT+AGG 0.407618 4:-40518062 MsG0480020398.01.T01:intron
TCCCTCCACAGACTCTGATA+TGG 0.414277 4:-40518788 MsG0480020398.01.T01:CDS
CGACAAACCTGAGGATAACT+AGG 0.415999 4:+40518939 None:intergenic
GCGTCGAGAGATTGAGAAAC+CGG 0.422672 4:+40521615 None:intergenic
TGCAAGGCGGTCTGCTTTCA+GGG 0.424847 4:+40518407 None:intergenic
TGATCAAAAGAAAGTAGTTT+CGG 0.425050 4:-40518293 MsG0480020398.01.T01:intron
CTCAATGTAAAGAAGTTTGA+TGG 0.425467 4:-40519620 MsG0480020398.01.T01:intron
GGGTTCTTATTCTTGAGTCT+GGG 0.426834 4:-40518742 MsG0480020398.01.T01:CDS
AGTGCTAAAAGTTACTCTTT+GGG 0.428131 4:-40517651 MsG0480020398.01.T01:CDS
GACAGATTTGAAAATGTTGA+TGG 0.428226 4:-40518763 MsG0480020398.01.T01:CDS
TCAATGGTATCTGAAATATC+AGG 0.428943 4:+40519341 None:intergenic
GAACGATCCATTCCCTTCTT+GGG 0.430080 4:-40517997 MsG0480020398.01.T01:CDS
ATTGAAAGATCATCCAAGTT+GGG 0.430730 4:+40517206 None:intergenic
AGAAGTACCTGCAAAGTGTA+TGG 0.431967 4:-40519378 MsG0480020398.01.T01:CDS
CTGCATTTGGCAAATGAGAA+AGG 0.433961 4:-40517248 MsG0480020398.01.T01:CDS
GACGGAGTTTGGTAGGGCTA+AGG 0.455399 4:+40521760 None:intergenic
TCAATATGCCTTCCACCTGT+TGG 0.459277 4:-40517188 MsG0480020398.01.T01:CDS
TATCCAAAGCTTCCCCAACT+TGG 0.459993 4:-40517219 MsG0480020398.01.T01:CDS
TTCTTAGTCTTTGTCTGCCT+AGG 0.462830 4:+40518523 None:intergenic
GGGCTAAGGGTTTCCGCCAT+TGG 0.465043 4:+40521774 None:intergenic
CGCAGTTGTCTGGCGATAGA+GGG 0.465933 4:+40519484 None:intergenic
CAAGTTCCTCTGGCTGGTAG+TGG 0.466861 4:+40518362 None:intergenic
GAAAATAATAAAAGACCTAC+TGG 0.469483 4:-40519128 MsG0480020398.01.T01:CDS
TGAGGATAACTAGGGAAACT+TGG 0.476403 4:+40518948 None:intergenic
TCTTCCGCTGAATTCTGGCC+AGG 0.480249 4:+40519095 None:intergenic
TCTTTAGTGTCTTGGGAGGA+GGG 0.481315 4:-40518188 MsG0480020398.01.T01:intron
GTTCAACCTACTTCCGAAGA+TGG 0.485975 4:-40518559 MsG0480020398.01.T01:CDS
AAGTTTCCCTAGTTATCCTC+AGG 0.486215 4:-40518946 MsG0480020398.01.T01:intron
GTTGACCCATCTTCGGAAGT+AGG 0.486447 4:+40518553 None:intergenic
TTTCAGGGTTGACCCATCTT+CGG 0.487534 4:+40518546 None:intergenic
GTGTCAAAATTTATTCACTC+AGG 0.492694 4:-40520186 MsG0480020398.01.T01:CDS
TGTGAAATCTAAATCAACTT+CGG 0.494252 4:+40518495 None:intergenic
GCAAGCTGCACTCTTGAGGC+CGG 0.496144 4:-40520208 MsG0480020398.01.T01:CDS
ATCGTTGGAACCTAAGATGA+AGG 0.502080 4:+40521701 None:intergenic
ACAGGGAGACGGAGTTTGGT+AGG 0.502179 4:+40521753 None:intergenic
ATGGGTCAACCCTGAAACCT+AGG 0.504650 4:-40518540 MsG0480020398.01.T01:CDS
GTATGACAAAACGTCCAAAC+AGG 0.507130 4:-40517684 MsG0480020398.01.T01:CDS
TTAATTCAAAACATAATGCA+TGG 0.511883 4:-40518717 MsG0480020398.01.T01:CDS
AATTAATGAGTATCACCAAC+AGG 0.512465 4:+40517173 None:intergenic
CCATTCCCTTCTTGGGACAA+TGG 0.512756 4:-40517990 MsG0480020398.01.T01:CDS
TCTTATTACACAGCCACGTC+AGG 0.513647 4:-40517895 MsG0480020398.01.T01:intron
GTCATCATGATCGTCACTCC+AGG 0.515674 4:+40519010 None:intergenic
TTCACAAAGCAACACACCTC+TGG 0.516439 4:+40519307 None:intergenic
TCAAAACATAATGCATGGGC+AGG 0.517029 4:-40518712 MsG0480020398.01.T01:CDS
GCAGGCAAGCTGCACTCTTG+AGG 0.517638 4:-40520212 MsG0480020398.01.T01:intron
ACCTAAGATGAAGGGGCTGG+TGG 0.518162 4:+40521710 None:intergenic
TCTGAGGCATATAAAGTCCT+TGG 0.519724 4:-40520148 MsG0480020398.01.T01:CDS
AATGTTGAAAATGGACAAGA+AGG 0.520677 4:-40519782 MsG0480020398.01.T01:CDS
GGTGCATTTGCAGATGCAGA+TGG 0.520905 4:-40518041 MsG0480020398.01.T01:CDS
ACGGAGTTTGGTAGGGCTAA+GGG 0.522028 4:+40521761 None:intergenic
GGCTGTGTAATAAGAGTGCC+TGG 0.522506 4:+40517903 None:intergenic
AATAGCTTGACAAGTTCCTC+TGG 0.524415 4:+40518352 None:intergenic
GTTAAGACACGGATCGGAGT+CGG 0.529066 4:+40521593 None:intergenic
GCACTTCCATTGTCCCAAGA+AGG 0.532754 4:+40517984 None:intergenic
CCTAAGATGAAGGGGCTGGT+GGG 0.534868 4:+40521711 None:intergenic
GCAGCGGCATTGCATTCACC+TGG 0.536954 4:+40517314 None:intergenic
TATTGAAAGATCATCCAAGT+TGG 0.537530 4:+40517205 None:intergenic
GGTGGATTCGGTTCATTCTG+AGG 0.540337 4:-40520164 MsG0480020398.01.T01:CDS
AATATGACAATGGCGCGACC+TGG 0.541035 4:-40519028 MsG0480020398.01.T01:CDS
GCTTGACAAGTTCCTCTGGC+TGG 0.543855 4:+40518356 None:intergenic
GTTGTCACCTTTGTCAACAC+TGG 0.545624 4:-40519660 MsG0480020398.01.T01:CDS
AATTGTGAAAATGGCGCTGA+CGG 0.546346 4:-40519056 MsG0480020398.01.T01:CDS
CACTTCCATTGTCCCAAGAA+GGG 0.551439 4:+40517985 None:intergenic
TTTACTATAGTCCTCAGAGT+TGG 0.551477 4:+40519161 None:intergenic
TTACTTTGTTGTAGTCTCTG+AGG 0.553886 4:-40518581 MsG0480020398.01.T01:intron
ATTCTTGCGGCGGATAGCAG+CGG 0.556570 4:+40521641 None:intergenic
CATAGTGACATAGAGGATCC+AGG 0.556836 4:-40517921 MsG0480020398.01.T01:CDS
TTCAACCTACTTCCGAAGAT+GGG 0.557125 4:-40518558 MsG0480020398.01.T01:CDS
GCTTGCGGTGGCGATGAGGC+TGG 0.559269 4:-40517963 MsG0480020398.01.T01:CDS
TTTCTTTGTAGATTGTGTTG+AGG 0.563094 4:-40519222 MsG0480020398.01.T01:CDS
TAATTCAAAACATAATGCAT+GGG 0.563594 4:-40518716 MsG0480020398.01.T01:CDS
CTGTTTGTTAAGACACGGAT+CGG 0.565979 4:+40521587 None:intergenic
ATTTCTGCTTCCGGATGTGA+AGG 0.568316 4:-40518332 MsG0480020398.01.T01:CDS
ACAGATTTGAAAATGTTGAT+GGG 0.569312 4:-40518762 MsG0480020398.01.T01:CDS
TGCGTGCGGCAACAGGGAGA+CGG 0.570618 4:+40521742 None:intergenic
TCTGGCAAAAGAAAGATCAA+TGG 0.571169 4:+40519325 None:intergenic
GAGCCTAGATCAGCAATGAC+TGG 0.571335 4:+40518984 None:intergenic
GAGGCATATAAAGTCCTTGG+TGG 0.572960 4:-40520145 MsG0480020398.01.T01:CDS
CTAGATCAGCAATGACTGGT+TGG 0.573390 4:+40518988 None:intergenic
TATGTAACAAGAAGTTTCAC+CGG 0.575684 4:+40519280 None:intergenic
GGAACCTAAGATGAAGGGGC+TGG 0.579975 4:+40521707 None:intergenic
TGTCAAAATTTATTCACTCA+GGG 0.580906 4:-40520185 MsG0480020398.01.T01:CDS
CAAAATTTATTCACTCAGGG+TGG 0.582175 4:-40520182 MsG0480020398.01.T01:CDS
TACCTTCTGAAAATTAGTCT+CGG 0.586056 4:+40521351 None:intergenic
GTCATCCATATCAGAGTCTG+TGG 0.588088 4:+40518783 None:intergenic
GTGTTGCTTTGTGAAATATC+CGG 0.589888 4:-40519299 MsG0480020398.01.T01:CDS
CTTGGTGGGATGAATAGAGC+AGG 0.590604 4:-40520130 MsG0480020398.01.T01:CDS
TTTGACGAAGGAGGAGCCAA+AGG 0.590682 4:-40519458 MsG0480020398.01.T01:CDS
TCGTTGGAACCTAAGATGAA+GGG 0.591646 4:+40521702 None:intergenic
TGATCATCATAGTGACATAG+AGG 0.592404 4:-40517928 MsG0480020398.01.T01:CDS
CGTCGAGAGATTGAGAAACC+GGG 0.595720 4:+40521616 None:intergenic
CAGGGAGACGGAGTTTGGTA+GGG 0.597407 4:+40521754 None:intergenic
ATCTGCTGTTTGTTAAGACA+CGG 0.598075 4:+40521582 None:intergenic
TGGGACAATGGAAGTGCTTG+CGG 0.601019 4:-40517978 MsG0480020398.01.T01:CDS
GAGGATAACTAGGGAAACTT+GGG 0.601691 4:+40518949 None:intergenic
TATCCGCCGCAAGAATCTCC+CGG 0.602098 4:-40521634 MsG0480020398.01.T01:CDS
GCAGGCCAAGAAGCTGAGCA+AGG 0.603755 4:-40520112 MsG0480020398.01.T01:intron
TTCAATAAACCTACCTGACG+TGG 0.605047 4:+40517882 None:intergenic
ACTGGATGCGTGCGGCAACA+GGG 0.606041 4:+40521736 None:intergenic
GCGTTCGAGCTGGTCATCGT+TGG 0.607845 4:+40521686 None:intergenic
AGACATATGAAGCACAAATG+AGG 0.608018 4:+40517272 None:intergenic
TTGAAAGATCATCCAAGTTG+GGG 0.608431 4:+40517207 None:intergenic
GAGTATCACCAACAGGTGGA+AGG 0.610758 4:+40517180 None:intergenic
CCATTGTCCCAAGAAGGGAA+TGG 0.613885 4:+40517990 None:intergenic
AAGTGCTTGCGGTGGCGATG+AGG 0.614531 4:-40517967 MsG0480020398.01.T01:CDS
CGTTGGAACCTAAGATGAAG+GGG 0.615786 4:+40521703 None:intergenic
CATAATGTCAGACACTACAC+TGG 0.616868 4:-40519813 MsG0480020398.01.T01:intron
TCTTTCTTTAGTGTCTTGGG+AGG 0.617208 4:-40518192 MsG0480020398.01.T01:intron
GCTTAACAGATGCTTGAACA+TGG 0.618407 4:+40517627 None:intergenic
TCGGTGTATATGGTGGATGT+AGG 0.619413 4:-40519418 MsG0480020398.01.T01:CDS
GCAGTTGTCTGGCGATAGAG+GGG 0.622554 4:+40519485 None:intergenic
GAGAAACCGGGAGATTCTTG+CGG 0.629116 4:+40521628 None:intergenic
AGGCATATAAAGTCCTTGGT+GGG 0.632793 4:-40520144 MsG0480020398.01.T01:CDS
ATCCATATCAGAGTCTGTGG+AGG 0.634191 4:+40518786 None:intergenic
GATGATTCCAGTGTTGACAA+AGG 0.634680 4:+40519653 None:intergenic
ATGAAATTTCTCCAACTCTG+AGG 0.635773 4:-40519172 MsG0480020398.01.T01:CDS
GGTGGGAGACTGGATGCGTG+CGG 0.636745 4:+40521728 None:intergenic
ACTTCCTGGCCAGAATTCAG+CGG 0.642146 4:-40519099 MsG0480020398.01.T01:CDS
CCAGGAAGTTGAAAACCAGT+AGG 0.642526 4:+40519113 None:intergenic
TCCATATCAGAGTCTGTGGA+GGG 0.645582 4:+40518787 None:intergenic
GACAAACCTGAGGATAACTA+GGG 0.648663 4:+40518940 None:intergenic
AATGTCAGACACTACACTGG+AGG 0.649854 4:-40519810 MsG0480020398.01.T01:intron
TTGCAACACAAAACTTCCAG+AGG 0.652553 4:-40518389 MsG0480020398.01.T01:CDS
GATGAGGCTGGTGATTATGA+AGG 0.653118 4:-40517951 MsG0480020398.01.T01:CDS
ATGTCAGACACTACACTGGA+GGG 0.658980 4:-40519809 MsG0480020398.01.T01:intron
AATAATCTCGGTGTATATGG+TGG 0.660208 4:-40519425 MsG0480020398.01.T01:CDS
AAACCGGGAGATTCTTGCGG+CGG 0.663125 4:+40521631 None:intergenic
ACTGCGAAATTTGACGAAGG+AGG 0.665207 4:-40519467 MsG0480020398.01.T01:CDS
TAATGAGTATCACCAACAGG+TGG 0.666458 4:+40517176 None:intergenic
AATGTCACTGATGTTTGCAG+CGG 0.674186 4:+40517298 None:intergenic
GACGGAGAAGAATATGACAA+TGG 0.675138 4:-40519038 MsG0480020398.01.T01:CDS
CTGCTCTATTCATCCCACCA+AGG 0.688474 4:+40520131 None:intergenic
GACAATGGAAGTGCTTGCGG+TGG 0.689721 4:-40517975 MsG0480020398.01.T01:CDS
ACAACTGCGAAATTTGACGA+AGG 0.719142 4:-40519470 MsG0480020398.01.T01:CDS
GGACTGCCACTACCAGCCAG+AGG 0.722451 4:-40518368 MsG0480020398.01.T01:CDS
AAACCGAAACACATTCAATG+TGG 0.728632 4:-40519254 MsG0480020398.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTCATTAAAATTTTATTT+TGG - Chr4:40518711-40518730 MsG0480020398.01.T01:CDS 10.0%
!! ACAAGAATACAAAAATTAAA+GGG + Chr4:40518434-40518453 None:intergenic 15.0%
!! TACAAGAATACAAAAATTAA+AGG + Chr4:40518435-40518454 None:intergenic 15.0%
!!! AATTAGTCTACATTTTAAAA+AGG + Chr4:40520817-40520836 None:intergenic 15.0%
!!! AGTAAAATTCTAAATTTTGT+AGG - Chr4:40520122-40520141 MsG0480020398.01.T01:CDS 15.0%
!! AAATCAATCAGAAAAATACT+TGG - Chr4:40517514-40517533 MsG0480020398.01.T01:intron 20.0%
!! AACATTAAAATCTCTTTATC+TGG + Chr4:40520306-40520325 None:intergenic 20.0%
!! AATCAATCAGAAAAATACTT+GGG - Chr4:40517515-40517534 MsG0480020398.01.T01:intron 20.0%
!! AGGAAATAAATACTAGATTA+TGG - Chr4:40517758-40517777 MsG0480020398.01.T01:intron 20.0%
!! AGTATCTTTCAAGAATTTAT+TGG - Chr4:40521601-40521620 MsG0480020398.01.T01:CDS 20.0%
!! ATTATTCATTAAAAGACCTT+TGG + Chr4:40519507-40519526 None:intergenic 20.0%
!! GGAAATAAATACTAGATTAT+GGG - Chr4:40517759-40517778 MsG0480020398.01.T01:intron 20.0%
!! TAATTCAAAACATAATGCAT+GGG - Chr4:40520230-40520249 MsG0480020398.01.T01:intron 20.0%
!! TATGAATGTACAAATTCAAA+CGG - Chr4:40519039-40519058 MsG0480020398.01.T01:CDS 20.0%
!! TCATCTTACTGATATTATTA+AGG - Chr4:40517554-40517573 MsG0480020398.01.T01:intron 20.0%
!! TCGATAACAATTTAAGAAAA+TGG - Chr4:40517846-40517865 MsG0480020398.01.T01:intron 20.0%
!! TTAATTCAAAACATAATGCA+TGG - Chr4:40520229-40520248 MsG0480020398.01.T01:intron 20.0%
!! TTCATAAGATATCAAACATT+AGG + Chr4:40519025-40519044 None:intergenic 20.0%
!!! AAGTGTTTGGATTTTATATT+TGG - Chr4:40517661-40517680 MsG0480020398.01.T01:CDS 20.0%
!!! ATTAAAATTTTATTTTGGGC+AGG - Chr4:40518716-40518735 MsG0480020398.01.T01:CDS 20.0%
!!! TTTTATTATTTTCATCGAAC+TGG + Chr4:40519811-40519830 None:intergenic 20.0%
! AACTGTAGCAAATTTCATTT+CGG + Chr4:40521429-40521448 None:intergenic 25.0%
! AAGTATAAAAAATCCAAAGG+TGG - Chr4:40520270-40520289 MsG0480020398.01.T01:intron 25.0%
! AATTAGAACTTATCATTCAG+TGG + Chr4:40521529-40521548 None:intergenic 25.0%
! ACAGATTTGAAAATGTTGAT+GGG - Chr4:40520184-40520203 MsG0480020398.01.T01:CDS 25.0%
! AGTATAAAAAATCCAAAGGT+GGG - Chr4:40520271-40520290 MsG0480020398.01.T01:intron 25.0%
! GAAAATAATAAAAGACCTAC+TGG - Chr4:40519818-40519837 MsG0480020398.01.T01:intron 25.0%
! GTTATATACGTGTATACTTT+AGG - Chr4:40518686-40518705 MsG0480020398.01.T01:CDS 25.0%
! TGAGTATTTATGTATCTTGT+TGG - Chr4:40518459-40518478 MsG0480020398.01.T01:CDS 25.0%
! TGATCAAAAGAAAGTAGTTT+CGG - Chr4:40520653-40520672 MsG0480020398.01.T01:intron 25.0%
! TGTCAAAATTTATTCACTCA+GGG - Chr4:40518761-40518780 MsG0480020398.01.T01:CDS 25.0%
! TGTGAAATCTAAATCAACTT+CGG + Chr4:40520454-40520473 None:intergenic 25.0%
! TTAACAAGATGATATTGATG+TGG - Chr4:40518188-40518207 MsG0480020398.01.T01:intron 25.0%
! TTAGATTGTATTTCAAGCTT+AGG - Chr4:40520884-40520903 MsG0480020398.01.T01:intron 25.0%
! TTCCAAATTTACTAGATTAG+AGG - Chr4:40517738-40517757 MsG0480020398.01.T01:intron 25.0%
! TTCCTCTAATCTAGTAAATT+TGG + Chr4:40517743-40517762 None:intergenic 25.0%
! TTGAATGTAATTACATGTGT+AGG - Chr4:40517875-40517894 MsG0480020398.01.T01:intron 25.0%
! TTTAGATTTCACAAATTCTC+TGG - Chr4:40520461-40520480 MsG0480020398.01.T01:intron 25.0%
!! ATGCTGCTTATAACTAATAA+CGG + Chr4:40519376-40519395 None:intergenic 25.0%
!! CTAATAACGGAAATAGAATA+AGG + Chr4:40519363-40519382 None:intergenic 25.0%
!! GGTCTTTTAATGAATAATCT+CGG - Chr4:40519509-40519528 MsG0480020398.01.T01:intron 25.0%
!! TATTTTACTGACCTGTTATT+CGG + Chr4:40521234-40521253 None:intergenic 25.0%
!! TGGAAGTATAAAAAATCCAA+AGG - Chr4:40520267-40520286 MsG0480020398.01.T01:intron 25.0%
!! TTTCAAAGTACTTTCTTGTA+TGG - Chr4:40520693-40520712 MsG0480020398.01.T01:intron 25.0%
!! TTTTATACTTCCAATGATCA+GGG + Chr4:40520260-40520279 None:intergenic 25.0%
!! TTTTTATACTTCCAATGATC+AGG + Chr4:40520261-40520280 None:intergenic 25.0%
!!! AAATGAAATTTGCTACAGTT+AGG - Chr4:40521429-40521448 MsG0480020398.01.T01:CDS 25.0%
!!! AATTTATTGGCTAATTTTCC+AGG - Chr4:40521614-40521633 MsG0480020398.01.T01:CDS 25.0%
!!! AATTTTGTTTACATTTTCGC+TGG + Chr4:40517422-40517441 None:intergenic 25.0%
!!! ACTGTATTTTGTCATTTTGA+TGG - Chr4:40518314-40518333 MsG0480020398.01.T01:CDS 25.0%
!!! CGTTGTTTGTTTTAATTTCT+TGG - Chr4:40517635-40517654 MsG0480020398.01.T01:CDS 25.0%
!!! CTGTATTTTGTCATTTTGAT+GGG - Chr4:40518315-40518334 MsG0480020398.01.T01:CDS 25.0%
!!! CTTTTAGAACTTGATTTTGA+TGG - Chr4:40518267-40518286 MsG0480020398.01.T01:intron 25.0%
!!! GCCATTTTCACAATTAAAAT+CGG + Chr4:40519885-40519904 None:intergenic 25.0%
!!! TATTTTAGTCTTCACAATAG+CGG - Chr4:40518596-40518615 MsG0480020398.01.T01:intron 25.0%
!!! TTTTTTAGTCTTCACAATAG+CGG - Chr4:40518502-40518521 MsG0480020398.01.T01:CDS 25.0%
AAAAAAACTACCTTCACATC+CGG + Chr4:40520627-40520646 None:intergenic 30.0%
AAAGAGAATCAGAATATGCT+AGG + Chr4:40518885-40518904 None:intergenic 30.0%
AACAGACATAGAGGTTTATA+TGG + Chr4:40520041-40520060 None:intergenic 30.0%
AAGTGCTAAAAGTTACTCTT+TGG - Chr4:40521294-40521313 MsG0480020398.01.T01:intron 30.0%
AATATGCTAGGCTTAATAAG+AGG + Chr4:40518873-40518892 None:intergenic 30.0%
AATGTTGAAAATGGACAAGA+AGG - Chr4:40519164-40519183 MsG0480020398.01.T01:CDS 30.0%
AATTTCTTGGTTCAAGTGTT+TGG - Chr4:40517648-40517667 MsG0480020398.01.T01:CDS 30.0%
AGATAAAAAGGTCAATAGTC+TGG - Chr4:40519202-40519221 MsG0480020398.01.T01:CDS 30.0%
AGATTGCTATAGTGATATAG+TGG + Chr4:40518098-40518117 None:intergenic 30.0%
AGTGCTAAAAGTTACTCTTT+GGG - Chr4:40521295-40521314 MsG0480020398.01.T01:intron 30.0%
ATAAACCTCTATGTCTGTTT+AGG - Chr4:40520042-40520061 MsG0480020398.01.T01:intron 30.0%
ATATGCTAGGCTTAATAAGA+GGG + Chr4:40518872-40518891 None:intergenic 30.0%
ATGTTCTTTCTTTAGTGTCT+TGG - Chr4:40520750-40520769 MsG0480020398.01.T01:intron 30.0%
ATTGAAAGATCATCCAAGTT+GGG + Chr4:40521743-40521762 None:intergenic 30.0%
CAAGAAAGAGACAGATAAAA+AGG - Chr4:40519190-40519209 MsG0480020398.01.T01:CDS 30.0%
CTCAATGTAAAGAAGTTTGA+TGG - Chr4:40519326-40519345 MsG0480020398.01.T01:CDS 30.0%
GACAGATTTGAAAATGTTGA+TGG - Chr4:40520183-40520202 MsG0480020398.01.T01:CDS 30.0%
GTGTCAAAATTTATTCACTC+AGG - Chr4:40518760-40518779 MsG0480020398.01.T01:CDS 30.0%
TATGTAACAAGAAGTTTCAC+CGG + Chr4:40519669-40519688 None:intergenic 30.0%
TATTGAAAGATCATCCAAGT+TGG + Chr4:40521744-40521763 None:intergenic 30.0%
TCCATTTCTTAAGAAATCCA+GGG - Chr4:40521371-40521390 MsG0480020398.01.T01:CDS 30.0%
TGCTCTTAATAAATTCCTCT+AGG - Chr4:40521096-40521115 MsG0480020398.01.T01:intron 30.0%
TGTTCTTTCTTTAGTGTCTT+GGG - Chr4:40520751-40520770 MsG0480020398.01.T01:intron 30.0%
TTGATATTCTAACAAGTGAG+TGG - Chr4:40520087-40520106 MsG0480020398.01.T01:intron 30.0%
TTTCTTTGTAGATTGTGTTG+AGG - Chr4:40519724-40519743 MsG0480020398.01.T01:intron 30.0%
! ACAATTTCAATCTGAAGTGT+AGG - Chr4:40517917-40517936 MsG0480020398.01.T01:CDS 30.0%
! ATGAATAATCTCGGTGTATA+TGG - Chr4:40519518-40519537 MsG0480020398.01.T01:intron 30.0%
! CACTTGTTAGAATATCAAAG+AGG + Chr4:40520085-40520104 None:intergenic 30.0%
! CTATTTGGGATTAACAACTT+AGG - Chr4:40518645-40518664 MsG0480020398.01.T01:intron 30.0%
! CTGAAATATCAGGTTCATTT+TGG + Chr4:40519598-40519617 None:intergenic 30.0%
! CTTAAGAAATGGAGGAATTT+TGG + Chr4:40521364-40521383 None:intergenic 30.0%
! TACCTTCTGAAAATTAGTCT+CGG + Chr4:40517598-40517617 None:intergenic 30.0%
! TACTGCAGTACATTTACTTT+TGG - Chr4:40519067-40519086 MsG0480020398.01.T01:CDS 30.0%
! TCAATGGTATCTGAAATATC+AGG + Chr4:40519608-40519627 None:intergenic 30.0%
!! AGATTAGATGTTTGCTGTAT+AGG - Chr4:40517698-40517717 MsG0480020398.01.T01:CDS 30.0%
!! GAGTGAATAAATTTTGACAC+CGG + Chr4:40518760-40518779 None:intergenic 30.0%
!!! AGTAATGTTTTGGGATTCTT+CGG + Chr4:40520516-40520535 None:intergenic 30.0%
!!! GCCGATTTTAATTGTGAAAA+TGG - Chr4:40519881-40519900 MsG0480020398.01.T01:intron 30.0%
!!! TTTTTTAGTCTTCGCAATAG+CGG - Chr4:40518548-40518567 MsG0480020398.01.T01:CDS 30.0%
AAAAATCCAAAGGTGGGATT+TGG - Chr4:40520277-40520296 MsG0480020398.01.T01:intron 35.0%
AAACCGAAACACATTCAATG+TGG - Chr4:40519692-40519711 MsG0480020398.01.T01:intron 35.0%
ACAAGATGATATTGATGTGG+TGG - Chr4:40518191-40518210 MsG0480020398.01.T01:intron 35.0%
ACCCTGGATTTCTTAAGAAA+TGG + Chr4:40521375-40521394 None:intergenic 35.0%
AGACATATGAAGCACAAATG+AGG + Chr4:40521677-40521696 None:intergenic 35.0%
AGTTATAAGCAGCATGTTTG+AGG - Chr4:40519381-40519400 MsG0480020398.01.T01:CDS 35.0%
ATGAAATTTCTCCAACTCTG+AGG - Chr4:40519774-40519793 MsG0480020398.01.T01:CDS 35.0%
CAAAATTTATTCACTCAGGG+TGG - Chr4:40518764-40518783 MsG0480020398.01.T01:CDS 35.0%
CTCCATTTCTTAAGAAATCC+AGG - Chr4:40521370-40521389 MsG0480020398.01.T01:CDS 35.0%
CTGGATTTCTTAAGAAATGG+AGG + Chr4:40521372-40521391 None:intergenic 35.0%
CTTCATATGTCTACTGCATT+TGG - Chr4:40521685-40521704 MsG0480020398.01.T01:CDS 35.0%
GATCTCTATATGTACAAGCA+CGG + Chr4:40520841-40520860 None:intergenic 35.0%
TATGCTTGTTTCCGAATAAC+AGG - Chr4:40521220-40521239 MsG0480020398.01.T01:intron 35.0%
TCACCACATTGAATGTGTTT+CGG + Chr4:40519698-40519717 None:intergenic 35.0%
TCAGTGTGTATAATACCTAG+AGG + Chr4:40521114-40521133 None:intergenic 35.0%
TCTGGCAAAAGAAAGATCAA+TGG + Chr4:40519624-40519643 None:intergenic 35.0%
TGATCATCATAGTGACATAG+AGG - Chr4:40521018-40521037 MsG0480020398.01.T01:intron 35.0%
TTCAGTCAAAATATTGCAGC+AGG - Chr4:40521179-40521198 MsG0480020398.01.T01:intron 35.0%
TTGAAAGATCATCCAAGTTG+GGG + Chr4:40521742-40521761 None:intergenic 35.0%
TTTACTATAGTCCTCAGAGT+TGG + Chr4:40519788-40519807 None:intergenic 35.0%
! AACACTGGAATCATCTTTTG+AGG - Chr4:40519301-40519320 MsG0480020398.01.T01:CDS 35.0%
! AATAATCTCGGTGTATATGG+TGG - Chr4:40519521-40519540 MsG0480020398.01.T01:intron 35.0%
! AGGTGCTATATAGCTTACTA+GGG - Chr4:40517937-40517956 MsG0480020398.01.T01:CDS 35.0%
! ATCTGCTGTTTGTTAAGACA+CGG + Chr4:40517367-40517386 None:intergenic 35.0%
! ATTGATCTTTCTTTTGCCAG+AGG - Chr4:40519623-40519642 MsG0480020398.01.T01:CDS 35.0%
! CATCCCACTATAGCATTTTT+GGG - Chr4:40518620-40518639 MsG0480020398.01.T01:intron 35.0%
! TACCGAGACTAATTTTCAGA+AGG - Chr4:40517593-40517612 MsG0480020398.01.T01:intron 35.0%
! TAGGTGCTATATAGCTTACT+AGG - Chr4:40517936-40517955 MsG0480020398.01.T01:CDS 35.0%
! TCAGGGAGAAGTAATGTTTT+GGG + Chr4:40520525-40520544 None:intergenic 35.0%
! TCATCCCACTATAGCATTTT+TGG - Chr4:40518619-40518638 MsG0480020398.01.T01:intron 35.0%
! TCTGGATTTTTGATCATGAC+TGG - Chr4:40519220-40519239 MsG0480020398.01.T01:CDS 35.0%
! TTACTTTGTTGTAGTCTCTG+AGG - Chr4:40520365-40520384 MsG0480020398.01.T01:intron 35.0%
! TTCAGGGAGAAGTAATGTTT+TGG + Chr4:40520526-40520545 None:intergenic 35.0%
!! GAATTTTGGTATACCTGAAC+AGG + Chr4:40521350-40521369 None:intergenic 35.0%
!! GAGGGTGTTAATGTTGAAAA+TGG - Chr4:40519155-40519174 MsG0480020398.01.T01:CDS 35.0%
!! GTGTTGCTTTGTGAAATATC+CGG - Chr4:40519647-40519666 MsG0480020398.01.T01:CDS 35.0%
!! TGTAATGCTCTAGAATCCTA+TGG + Chr4:40521484-40521503 None:intergenic 35.0%
!! TGTTGACTCTCTATTCTACA+GGG - Chr4:40521566-40521585 MsG0480020398.01.T01:CDS 35.0%
!!! AGCATTTTTGGGTGCTATTT+GGG - Chr4:40518631-40518650 MsG0480020398.01.T01:intron 35.0%
!!! GTGCTATTTTAACTCTCCAT+AGG - Chr4:40521465-40521484 MsG0480020398.01.T01:intron 35.0%
!!! TAGCATTTTTGGGTGCTATT+TGG - Chr4:40518630-40518649 MsG0480020398.01.T01:intron 35.0%
!!! TTTTTTGTAGCCGCAAATTG+CGG - Chr4:40518060-40518079 MsG0480020398.01.T01:CDS 35.0%
AAGTTTCCCTAGTTATCCTC+AGG - Chr4:40520000-40520019 MsG0480020398.01.T01:intron 40.0%
AATAGCTTGACAAGTTCCTC+TGG + Chr4:40520597-40520616 None:intergenic 40.0%
AATGTCACTGATGTTTGCAG+CGG + Chr4:40521651-40521670 None:intergenic 40.0%
ACAACTGCGAAATTTGACGA+AGG - Chr4:40519476-40519495 MsG0480020398.01.T01:CDS 40.0%
AGCACCCAAAAATGCTATAG+TGG + Chr4:40518627-40518646 None:intergenic 40.0%
AGGCATATAAAGTCCTTGGT+GGG - Chr4:40518802-40518821 MsG0480020398.01.T01:CDS 40.0%
ATCGTTGGAACCTAAGATGA+AGG + Chr4:40517248-40517267 None:intergenic 40.0%
CACTTGAACATCAACCTGTT+TGG + Chr4:40521279-40521298 None:intergenic 40.0%
CATAATGTCAGACACTACAC+TGG - Chr4:40519133-40519152 MsG0480020398.01.T01:CDS 40.0%
CCTAATGGAGATTAGGAGTT+GGG - Chr4:40518136-40518155 MsG0480020398.01.T01:intron 40.0%
CTCATCCTAAACAGACATAG+AGG + Chr4:40520050-40520069 None:intergenic 40.0%
CTGCATTTGGCAAATGAGAA+AGG - Chr4:40521698-40521717 MsG0480020398.01.T01:CDS 40.0%
CTTTGTGGATGAGAGTTACA+GGG - Chr4:40518951-40518970 MsG0480020398.01.T01:CDS 40.0%
GAACTTATCATTCAGTGGCA+AGG + Chr4:40521524-40521543 None:intergenic 40.0%
GACAAACCTGAGGATAACTA+GGG + Chr4:40520009-40520028 None:intergenic 40.0%
GACGGAGAAGAATATGACAA+TGG - Chr4:40519908-40519927 MsG0480020398.01.T01:intron 40.0%
GAGGATAACTAGGGAAACTT+GGG + Chr4:40520000-40520019 None:intergenic 40.0%
GCACCCAAAAATGCTATAGT+GGG + Chr4:40518626-40518645 None:intergenic 40.0%
GCTTAACAGATGCTTGAACA+TGG + Chr4:40521322-40521341 None:intergenic 40.0%
GGAACTTAGAAGTGAAGATG+AGG - Chr4:40518212-40518231 MsG0480020398.01.T01:intron 40.0%
GGGATTAACAACTTAGGTGA+AGG - Chr4:40518651-40518670 MsG0480020398.01.T01:intron 40.0%
GGGTTCTTATTCTTGAGTCT+GGG - Chr4:40520204-40520223 MsG0480020398.01.T01:CDS 40.0%
GTATGACAAAACGTCCAAAC+AGG - Chr4:40521262-40521281 MsG0480020398.01.T01:intron 40.0%
GTTAAAACACGACAAACCTG+AGG + Chr4:40520019-40520038 None:intergenic 40.0%
GTTTCTCGATGATTGCTTTG+TGG - Chr4:40518936-40518955 MsG0480020398.01.T01:intron 40.0%
TAATGAGTATCACCAACAGG+TGG + Chr4:40521773-40521792 None:intergenic 40.0%
TACAATTATCCTTCCCTCTC+TGG - Chr4:40521394-40521413 MsG0480020398.01.T01:CDS 40.0%
TCAAAACATAATGCATGGGC+AGG - Chr4:40520234-40520253 MsG0480020398.01.T01:intron 40.0%
TCGTTGGAACCTAAGATGAA+GGG + Chr4:40517247-40517266 None:intergenic 40.0%
TCTTTCTTTAGTGTCTTGGG+AGG - Chr4:40520754-40520773 MsG0480020398.01.T01:intron 40.0%
TGAGGATAACTAGGGAAACT+TGG + Chr4:40520001-40520020 None:intergenic 40.0%
TGGGTTCTTATTCTTGAGTC+TGG - Chr4:40520203-40520222 MsG0480020398.01.T01:CDS 40.0%
TTCAACCTACTTCCGAAGAT+GGG - Chr4:40520388-40520407 MsG0480020398.01.T01:intron 40.0%
TTCAATAAACCTACCTGACG+TGG + Chr4:40521067-40521086 None:intergenic 40.0%
TTGCAACACAAAACTTCCAG+AGG - Chr4:40520557-40520576 MsG0480020398.01.T01:intron 40.0%
! AATTGTGAAAATGGCGCTGA+CGG - Chr4:40519890-40519909 MsG0480020398.01.T01:intron 40.0%
! CTGTTTGTTAAGACACGGAT+CGG + Chr4:40517362-40517381 None:intergenic 40.0%
! GTTTGGACGTTTTGTCATAC+TGG + Chr4:40521262-40521281 None:intergenic 40.0%
! TCTGAGGCATATAAAGTCCT+TGG - Chr4:40518798-40518817 MsG0480020398.01.T01:CDS 40.0%
! TGGCGAGCTTTATACAATTC+TGG + Chr4:40517402-40517421 None:intergenic 40.0%
! TTATTCACTCAGGGTGGATT+CGG - Chr4:40518770-40518789 MsG0480020398.01.T01:CDS 40.0%
! TTCTTAGTCTTTGTCTGCCT+AGG + Chr4:40520426-40520445 None:intergenic 40.0%
! TTTTGGTATACCTGAACAGG+AGG + Chr4:40521347-40521366 None:intergenic 40.0%
!! AGAAGTACCTGCAAAGTGTA+TGG - Chr4:40519568-40519587 MsG0480020398.01.T01:intron 40.0%
!! AGATGTTTGCTGTATAGGTC+AGG - Chr4:40517703-40517722 MsG0480020398.01.T01:CDS 40.0%
!! CTGTTGACTCTCTATTCTAC+AGG - Chr4:40521565-40521584 MsG0480020398.01.T01:CDS 40.0%
!! GATGATTCCAGTGTTGACAA+AGG + Chr4:40519296-40519315 None:intergenic 40.0%
!! TCTGGAAGTTTTGTGTTGCA+AGG + Chr4:40520558-40520577 None:intergenic 40.0%
!! TGTCAAGCTATTTCTGCTTC+CGG - Chr4:40520605-40520624 MsG0480020398.01.T01:intron 40.0%
!!! AATGTTTTGGGATTCTTCGG+AGG + Chr4:40520513-40520532 None:intergenic 40.0%
AATCCAAAGGTGGGATTTGG+AGG - Chr4:40520280-40520299 MsG0480020398.01.T01:intron 45.0%
AATGTCAGACACTACACTGG+AGG - Chr4:40519136-40519155 MsG0480020398.01.T01:CDS 45.0%
ACAAAAAACGCCACTGCTGA+AGG + Chr4:40518048-40518067 None:intergenic 45.0%
ACTGCGAAATTTGACGAAGG+AGG - Chr4:40519479-40519498 MsG0480020398.01.T01:CDS 45.0%
AGAACGATCCATTCCCTTCT+TGG - Chr4:40520948-40520967 MsG0480020398.01.T01:intron 45.0%
AGCAAGATGTCCGCAATTTG+CGG + Chr4:40518073-40518092 None:intergenic 45.0%
AGCTGTGCCTAATGGAGATT+AGG - Chr4:40518129-40518148 MsG0480020398.01.T01:intron 45.0%
AGGAGGGCAAAAAGATTCTC+AGG - Chr4:40520774-40520793 MsG0480020398.01.T01:intron 45.0%
AGGGAAGGATAATTGTACCC+TGG + Chr4:40521391-40521410 None:intergenic 45.0%
ATCCATATCAGAGTCTGTGG+AGG + Chr4:40520163-40520182 None:intergenic 45.0%
ATGGAGATTAGGAGTTGGGA+TGG - Chr4:40518140-40518159 MsG0480020398.01.T01:intron 45.0%
ATGTCAGACACTACACTGGA+GGG - Chr4:40519137-40519156 MsG0480020398.01.T01:CDS 45.0%
ATTTCTGCTTCCGGATGTGA+AGG - Chr4:40520614-40520633 MsG0480020398.01.T01:intron 45.0%
CAACCAGTCATTGCTGATCT+AGG - Chr4:40519959-40519978 MsG0480020398.01.T01:intron 45.0%
CACTTCCATTGTCCCAAGAA+GGG + Chr4:40520964-40520983 None:intergenic 45.0%
CATAGTGACATAGAGGATCC+AGG - Chr4:40521025-40521044 MsG0480020398.01.T01:intron 45.0%
CCAGGAAGTTGAAAACCAGT+AGG + Chr4:40519836-40519855 None:intergenic 45.0%
CCCAACTCCTAATCTCCATT+AGG + Chr4:40518139-40518158 None:intergenic 45.0%
CGACAAACCTGAGGATAACT+AGG + Chr4:40520010-40520029 None:intergenic 45.0%
CGTCAAATTTCGCAGTTGTC+TGG + Chr4:40519475-40519494 None:intergenic 45.0%
CGTTGGAACCTAAGATGAAG+GGG + Chr4:40517246-40517265 None:intergenic 45.0%
CTAACAAGTGAGTGGTTCAG+CGG - Chr4:40520095-40520114 MsG0480020398.01.T01:intron 45.0%
CTAGATCAGCAATGACTGGT+TGG + Chr4:40519961-40519980 None:intergenic 45.0%
CTTTGTCTGCCTAGGTTTCA+GGG + Chr4:40520418-40520437 None:intergenic 45.0%
GAACGATCCATTCCCTTCTT+GGG - Chr4:40520949-40520968 MsG0480020398.01.T01:intron 45.0%
GAGGCATATAAAGTCCTTGG+TGG - Chr4:40518801-40518820 MsG0480020398.01.T01:CDS 45.0%
GATGAGGCTGGTGATTATGA+AGG - Chr4:40520995-40521014 MsG0480020398.01.T01:intron 45.0%
GCCTAATGGAGATTAGGAGT+TGG - Chr4:40518135-40518154 MsG0480020398.01.T01:intron 45.0%
GCTTTGTGGATGAGAGTTAC+AGG - Chr4:40518950-40518969 MsG0480020398.01.T01:CDS 45.0%
GTCATCCATATCAGAGTCTG+TGG + Chr4:40520166-40520185 None:intergenic 45.0%
GTTCAACCTACTTCCGAAGA+TGG - Chr4:40520387-40520406 MsG0480020398.01.T01:intron 45.0%
GTTGTCACCTTTGTCAACAC+TGG - Chr4:40519286-40519305 MsG0480020398.01.T01:CDS 45.0%
TATCCAAAGCTTCCCCAACT+TGG - Chr4:40521727-40521746 MsG0480020398.01.T01:CDS 45.0%
TCAATATGCCTTCCACCTGT+TGG - Chr4:40521758-40521777 MsG0480020398.01.T01:CDS 45.0%
TCCATATCAGAGTCTGTGGA+GGG + Chr4:40520162-40520181 None:intergenic 45.0%
TCTTATTACACAGCCACGTC+AGG - Chr4:40521051-40521070 MsG0480020398.01.T01:intron 45.0%
TCTTTAGTGTCTTGGGAGGA+GGG - Chr4:40520758-40520777 MsG0480020398.01.T01:intron 45.0%
TCTTTGTCTGCCTAGGTTTC+AGG + Chr4:40520419-40520438 None:intergenic 45.0%
TGGCTTTCCATACACTTTGC+AGG + Chr4:40519578-40519597 None:intergenic 45.0%
TGTAACCTTGCTCAGCTTCT+TGG + Chr4:40518842-40518861 None:intergenic 45.0%
TGTCAGTAGCACTGCTATAG+CGG - Chr4:40517971-40517990 MsG0480020398.01.T01:CDS 45.0%
TGTTAAGCTTCCTCCTGTTC+AGG - Chr4:40521334-40521353 MsG0480020398.01.T01:intron 45.0%
TTCACAAAGCAACACACCTC+TGG + Chr4:40519642-40519661 None:intergenic 45.0%
TTCTTTAGTGTCTTGGGAGG+AGG - Chr4:40520757-40520776 MsG0480020398.01.T01:intron 45.0%
TTTCAGGGTTGACCCATCTT+CGG + Chr4:40520403-40520422 None:intergenic 45.0%
! AGCAGTGCTACTGACAACAT+AGG + Chr4:40517967-40517986 None:intergenic 45.0%
!! GGAAGTTTTGTGTTGCAAGG+CGG + Chr4:40520555-40520574 None:intergenic 45.0%
!! TCGGTGTATATGGTGGATGT+AGG - Chr4:40519528-40519547 MsG0480020398.01.T01:intron 45.0%
!!! CCTACTGGTTTTCAACTTCC+TGG - Chr4:40519833-40519852 MsG0480020398.01.T01:intron 45.0%
!!! ATTATTTAATTTTTGATTTT+GGG - Chr4:40517475-40517494 MsG0480020398.01.T01:intron 5.0%
!!! TATTATTTAATTTTTGATTT+TGG - Chr4:40517474-40517493 MsG0480020398.01.T01:intron 5.0%
!!! TTTCATTAAAATTTTATTTT+GGG - Chr4:40518712-40518731 MsG0480020398.01.T01:CDS 5.0%
AATATGACAATGGCGCGACC+TGG - Chr4:40519918-40519937 MsG0480020398.01.T01:intron 50.0%
ACCGACAAGCTATGAAGCAC+TGG - Chr4:40517794-40517813 MsG0480020398.01.T01:intron 50.0%
ACGGAGTTTGGTAGGGCTAA+GGG + Chr4:40517188-40517207 None:intergenic 50.0%
ACTTCCTGGCCAGAATTCAG+CGG - Chr4:40519847-40519866 MsG0480020398.01.T01:intron 50.0%
ATGGGTCAACCCTGAAACCT+AGG - Chr4:40520406-40520425 MsG0480020398.01.T01:intron 50.0%
ATTACACAGCCACGTCAGGT+AGG - Chr4:40521055-40521074 MsG0480020398.01.T01:intron 50.0%
CAAGCTCTTCCGCTGAATTC+TGG + Chr4:40519859-40519878 None:intergenic 50.0%
CCATTAGGCACAGCTGTAGT+GGG + Chr4:40518124-40518143 None:intergenic 50.0%
CCATTCCCTTCTTGGGACAA+TGG - Chr4:40520956-40520975 MsG0480020398.01.T01:intron 50.0%
CCATTGTCCCAAGAAGGGAA+TGG + Chr4:40520959-40520978 None:intergenic 50.0%
CGTCGAGAGATTGAGAAACC+GGG + Chr4:40517333-40517352 None:intergenic 50.0%
CTGCTCTATTCATCCCACCA+AGG + Chr4:40518818-40518837 None:intergenic 50.0%
CTTGGTGGGATGAATAGAGC+AGG - Chr4:40518816-40518835 MsG0480020398.01.T01:intron 50.0%
GAGAAACCGGGAGATTCTTG+CGG + Chr4:40517321-40517340 None:intergenic 50.0%
GAGCCTAGATCAGCAATGAC+TGG + Chr4:40519965-40519984 None:intergenic 50.0%
GAGTATCACCAACAGGTGGA+AGG + Chr4:40521769-40521788 None:intergenic 50.0%
GCACTTCCATTGTCCCAAGA+AGG + Chr4:40520965-40520984 None:intergenic 50.0%
GCGTCGAGAGATTGAGAAAC+CGG + Chr4:40517334-40517353 None:intergenic 50.0%
GGAATAGCGTAGCAGTGGTA+GGG - Chr4:40517992-40518011 MsG0480020398.01.T01:CDS 50.0%
GGTGCATTTGCAGATGCAGA+TGG - Chr4:40520905-40520924 MsG0480020398.01.T01:intron 50.0%
GTCATCATGATCGTCACTCC+AGG + Chr4:40519939-40519958 None:intergenic 50.0%
GTTAAGACACGGATCGGAGT+CGG + Chr4:40517356-40517375 None:intergenic 50.0%
GTTGACCCATCTTCGGAAGT+AGG + Chr4:40520396-40520415 None:intergenic 50.0%
TCAGAGAAACCAGAGAGGGA+AGG + Chr4:40521406-40521425 None:intergenic 50.0%
TCCATTAGGCACAGCTGTAG+TGG + Chr4:40518125-40518144 None:intergenic 50.0%
TCCCTCCACAGACTCTGATA+TGG - Chr4:40520158-40520177 MsG0480020398.01.T01:CDS 50.0%
TCGGTCAGAGAAACCAGAGA+GGG + Chr4:40521410-40521429 None:intergenic 50.0%
TTCGGTCAGAGAAACCAGAG+AGG + Chr4:40521411-40521430 None:intergenic 50.0%
TTTGACGAAGGAGGAGCCAA+AGG - Chr4:40519488-40519507 MsG0480020398.01.T01:CDS 50.0%
! ATAGCGGAATAGCGTAGCAG+TGG - Chr4:40517987-40518006 MsG0480020398.01.T01:CDS 50.0%
! CATCCAAGTTGGGGAAGCTT+TGG + Chr4:40521733-40521752 None:intergenic 50.0%
! GCCAGTGCTTCATAGCTTGT+CGG + Chr4:40517798-40517817 None:intergenic 50.0%
! GGTGGATTCGGTTCATTCTG+AGG - Chr4:40518782-40518801 MsG0480020398.01.T01:CDS 50.0%
!! GGCTGTGTAATAAGAGTGCC+TGG + Chr4:40521046-40521065 None:intergenic 50.0%
!! TGGGACAATGGAAGTGCTTG+CGG - Chr4:40520968-40520987 MsG0480020398.01.T01:intron 50.0%
AAACCGGGAGATTCTTGCGG+CGG + Chr4:40517318-40517337 None:intergenic 55.0%
ACAGGGAGACGGAGTTTGGT+AGG + Chr4:40517196-40517215 None:intergenic 55.0%
ACCTAAGATGAAGGGGCTGG+TGG + Chr4:40517239-40517258 None:intergenic 55.0%
AGCGTAGCAGTGGTAGGGTT+TGG - Chr4:40517997-40518016 MsG0480020398.01.T01:CDS 55.0%
ATTCTTGCGGCGGATAGCAG+CGG + Chr4:40517308-40517327 None:intergenic 55.0%
CAAGTTCCTCTGGCTGGTAG+TGG + Chr4:40520587-40520606 None:intergenic 55.0%
CAGGGAGACGGAGTTTGGTA+GGG + Chr4:40517195-40517214 None:intergenic 55.0%
CCCACTACAGCTGTGCCTAA+TGG - Chr4:40518121-40518140 MsG0480020398.01.T01:intron 55.0%
CGCAGTTGTCTGGCGATAGA+GGG + Chr4:40519465-40519484 None:intergenic 55.0%
CGGAATAGCGTAGCAGTGGT+AGG - Chr4:40517991-40518010 MsG0480020398.01.T01:CDS 55.0%
GACGGAGTTTGGTAGGGCTA+AGG + Chr4:40517189-40517208 None:intergenic 55.0%
GCAGTTGTCTGGCGATAGAG+GGG + Chr4:40519464-40519483 None:intergenic 55.0%
GCTTGACAAGTTCCTCTGGC+TGG + Chr4:40520593-40520612 None:intergenic 55.0%
GGAACCTAAGATGAAGGGGC+TGG + Chr4:40517242-40517261 None:intergenic 55.0%
TATCCGCCGCAAGAATCTCC+CGG - Chr4:40517312-40517331 MsG0480020398.01.T01:CDS 55.0%
TCGCAGTTGTCTGGCGATAG+AGG + Chr4:40519466-40519485 None:intergenic 55.0%
TCTTCCGCTGAATTCTGGCC+AGG + Chr4:40519854-40519873 None:intergenic 55.0%
TGCAAGGCGGTCTGCTTTCA+GGG + Chr4:40520542-40520561 None:intergenic 55.0%
TGGCCTCCAAATCCCACCTT+TGG + Chr4:40520286-40520305 None:intergenic 55.0%
TTGCAAGGCGGTCTGCTTTC+AGG + Chr4:40520543-40520562 None:intergenic 55.0%
! CCTAAGATGAAGGGGCTGGT+GGG + Chr4:40517238-40517257 None:intergenic 55.0%
!! GACAATGGAAGTGCTTGCGG+TGG - Chr4:40520971-40520990 MsG0480020398.01.T01:intron 55.0%
AAGTGCTTGCGGTGGCGATG+AGG - Chr4:40520979-40520998 MsG0480020398.01.T01:intron 60.0%
ACTGCTGAAGGCAGCTCGCA+TGG + Chr4:40518036-40518055 None:intergenic 60.0%
ACTGGATGCGTGCGGCAACA+GGG + Chr4:40517213-40517232 None:intergenic 60.0%
ATGCGAGCTGCCTTCAGCAG+TGG - Chr4:40518035-40518054 MsG0480020398.01.T01:CDS 60.0%
CATGGGCAGGCCCTGATCAT+TGG - Chr4:40520247-40520266 MsG0480020398.01.T01:intron 60.0%
CCCACCAGCCCCTTCATCTT+AGG - Chr4:40517235-40517254 MsG0480020398.01.T01:CDS 60.0%
GCAAGCTGCACTCTTGAGGC+CGG - Chr4:40518738-40518757 MsG0480020398.01.T01:CDS 60.0%
GCAGCGGCATTGCATTCACC+TGG + Chr4:40521635-40521654 None:intergenic 60.0%
GCAGGCAAGCTGCACTCTTG+AGG - Chr4:40518734-40518753 MsG0480020398.01.T01:CDS 60.0%
GCAGGCCAAGAAGCTGAGCA+AGG - Chr4:40518834-40518853 MsG0480020398.01.T01:intron 60.0%
GCGTTCGAGCTGGTCATCGT+TGG + Chr4:40517263-40517282 None:intergenic 60.0%
GGCAACAGGGAGACGGAGTT+TGG + Chr4:40517200-40517219 None:intergenic 60.0%
TCATGCTTCCGCGTCTGCGT+CGG + Chr4:40518238-40518257 None:intergenic 60.0%
AGATGAGGCCGACGCAGACG+CGG - Chr4:40518227-40518246 MsG0480020398.01.T01:intron 65.0%
GACTGGATGCGTGCGGCAAC+AGG + Chr4:40517214-40517233 None:intergenic 65.0%
GGACTGCCACTACCAGCCAG+AGG - Chr4:40520578-40520597 MsG0480020398.01.T01:intron 65.0%
GGTGGGAGACTGGATGCGTG+CGG + Chr4:40517221-40517240 None:intergenic 65.0%
GTGCTTGAGCGCGTTCGAGC+TGG + Chr4:40517273-40517292 None:intergenic 65.0%
TGCGTGCGGCAACAGGGAGA+CGG + Chr4:40517207-40517226 None:intergenic 65.0%
! TGAAGGGGCTGGTGGGAGAC+TGG + Chr4:40517231-40517250 None:intergenic 65.0%
!! GGCTGGTAGTGGCAGTCCTC+TGG + Chr4:40520576-40520595 None:intergenic 65.0%
GCTTGCGGTGGCGATGAGGC+TGG - Chr4:40520983-40521002 MsG0480020398.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 40517175 40521793 40517175 ID=MsG0480020398.01;Name=MsG0480020398.01
Chr4 mRNA 40517175 40521793 40517175 ID=MsG0480020398.01.T01;Parent=MsG0480020398.01;Name=MsG0480020398.01.T01;_AED=0.24;_eAED=0.25;_QI=0|0|0|1|1|1|12|0|719
Chr4 exon 40521539 40521793 40521539 ID=MsG0480020398.01.T01:exon:16898;Parent=MsG0480020398.01.T01
Chr4 exon 40521354 40521455 40521354 ID=MsG0480020398.01.T01:exon:16897;Parent=MsG0480020398.01.T01
Chr4 exon 40520113 40520230 40520113 ID=MsG0480020398.01.T01:exon:16896;Parent=MsG0480020398.01.T01
Chr4 exon 40519757 40519824 40519757 ID=MsG0480020398.01.T01:exon:16895;Parent=MsG0480020398.01.T01
Chr4 exon 40519621 40519681 40519621 ID=MsG0480020398.01.T01:exon:16894;Parent=MsG0480020398.01.T01
Chr4 exon 40518947 40519524 40518947 ID=MsG0480020398.01.T01:exon:16893;Parent=MsG0480020398.01.T01
Chr4 exon 40518680 40518824 40518680 ID=MsG0480020398.01.T01:exon:16892;Parent=MsG0480020398.01.T01
Chr4 exon 40518294 40518589 40518294 ID=MsG0480020398.01.T01:exon:16891;Parent=MsG0480020398.01.T01
Chr4 exon 40518173 40518203 40518173 ID=MsG0480020398.01.T01:exon:16890;Parent=MsG0480020398.01.T01
Chr4 exon 40517896 40518080 40517896 ID=MsG0480020398.01.T01:exon:16889;Parent=MsG0480020398.01.T01
Chr4 exon 40517613 40517726 40517613 ID=MsG0480020398.01.T01:exon:16888;Parent=MsG0480020398.01.T01
Chr4 exon 40517175 40517381 40517175 ID=MsG0480020398.01.T01:exon:16887;Parent=MsG0480020398.01.T01
Chr4 CDS 40521539 40521793 40521539 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40521354 40521455 40521354 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40520113 40520230 40520113 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40519757 40519824 40519757 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40519621 40519681 40519621 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40518947 40519524 40518947 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40518680 40518824 40518680 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40518294 40518589 40518294 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40518173 40518203 40518173 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40517896 40518080 40517896 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40517613 40517726 40517613 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Chr4 CDS 40517175 40517381 40517175 ID=MsG0480020398.01.T01:cds;Parent=MsG0480020398.01.T01
Gene Sequence

>MsG0480020398.01.T01

ATGGCGGAAACCCTTAGCCCTACCAAACTCCGTCTCCCTGTTGCCGCACGCATCCAGTCTCCCACCAGCCCCTTCATCTTAGGTTCCAACGATGACCAGCTCGAACGCGCTCAAGCACGTGCAGCACGCGCCGCTGCTATCCGCCGCAAGAATCTCCCGGTTTCTCAATCTCTCGACGCCGACTCCGATCCGTGTCTTAACAAACAGCAGATCTTCGATTTGTTCCAGAATTGTATAAAGCTCGCCAGCGAAAATAAAATCAATCAGAAAAATACTTGGGAGTTGAACTTGATTGATCATCTTACTGATATTATTAAGGCTGAAGAAGAAAATGATACCGAGACTAATTTTCAGAAGGCAAGCTGCACTCTTGAGGCCGGTGTCAAAATTTATTCACTCAGGGTGGATTCGGTTCATTCTGAGGCATATAAAGTCCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGACACTACACTGGAGGGTGTTAATGTTGAAAATGGACAAGAAGGAAGCAAGAAAGAGACAGATAAAAAGTTGTCACCTTTGTCAACACTGGAATCATCTTTTGAGGTTCTCAATGTAAAGAAGTTTGATGCTGCATTTGTTGTTGATCCCCTCTATCGCCAGACAACTGCGAAATTTGACGAAGGAGGAGCCAAAGGTCTTTTAATGAATAATCTCGGTGTATATGGTGGATGTAGGCTGCTGTTTGATTCACTAGAAGTACCTGCAAAGTGTATGGAAAGCCAAAATGAACCTGATATTTCAGATACCATTGATCTTTCTTTTGCCAGAGGTGTGTTGCTTTGTGAAATATCCGGTGAAACTTCTTGTTACATATGCAAACCGAAACACATTCAATGTGGTGATTTAATTTTCTTTGTAGATTGTGTTGAGGAGATAGTATTAGAGATGCGTGTGAAAGATGAAATTTCTCCAACTCTGAGGACTATAGTAAACCAGTTCGATGAAAATAATAAAAGACCTACTGGTTTTCAACTTCCTGGCCAGAATTCAGCGGAAGAGCTTGATGCCGATTTTAATTGTGAAAATGGCGCTGACGGAGAAGAATATGACAATGGCGCGACCTGGAGTGACGATCATGATGACCAACCAGTCATTGCTGATCTAGGCTCTAATGATGTAGACCCAAGTTTCCCTAGTTATCCTCAGGAAAATGAGCAGTTTCCCTCCACAGACTCTGATATGGATGACAGATTTGAAAATGTTGATGGGTTCTTATTCTTGAGTCTGGGTTTTAATTCAAAACATAATGCATGGGCAGGCCCTGATCATTGGAAGTATAAAAAATCCAAAGTCTCTGAGGTTCAACCTACTTCCGAAGATGGGTCAACCCTGAAACCTAGGCAGACAAAGACTAAGAAACAAGCCGAAGTTGATTTAGATTTCACAAATTCTCTGGAGAAAGACTTGTCTGATATATTTGCTCCTCCGAAGAATCCCAAAACATTACTTCTCCCTGAAAGCAGACCGCCTTGCAACACAAAACTTCCAGAGGACTGCCACTACCAGCCAGAGGAACTTGTCAAGCTATTTCTGCTTCCGGATGTGAAGGTAGTTTTTTTCTTTGTTGATCAAAAGAAAGTAGTTTCGTGTCTTGGGAGGAGGGCAAAAAGATTCTCAGATTGTATTTCAAGCTTAGGTGCATTTGCAGATGCAGATGGATCTAGAGATCAATTCAACGAGAACGATCCATTCCCTTCTTGGGACAATGGAAGTGCTTGCGGTGGCGATGAGGCTGGTGATTATGAAGGTGATCATCATAGTGACATAGAGGATCCAGGCACTCTTATTACACAGCCACGTCAGGTCAGTAAAATAGAAGTCCAGTATGACAAAACGTCCAAACAGGTTGATGTTCAAGTGCTAAAAGTTACTCTTTGGGACCATGTTCAAGCATCTGTTAAGCTTCCTCCTGTTCAGGGTCAAGAAGAAATAGTATCTTTCAAGAATTTATTGGCTAATTTTCCAGGTGAATGCAATGCCGCTGCAAACATCAGTGACATTTCTCCTCATTTGTGCTTCATATGTCTACTGCATTTGGCAAATGAGAAAGGATTGAGTATCCAAAGCTTCCCCAACTTGGATGATCTTTCAATATGCCTTCCACCTGTTGGTGATACTCATTAA

Protein sequence

>MsG0480020398.01.T01

MAETLSPTKLRLPVAARIQSPTSPFILGSNDDQLERAQARAARAAAIRRKNLPVSQSLDADSDPCLNKQQIFDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDTETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGVNVENGQEGSKKETDKKLSPLSTLESSFEVLNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRLLFDSLEVPAKCMESQNEPDISDTIDLSFARGVLLCEISGETSCYICKPKHIQCGDLIFFVDCVEEIVLEMRVKDEISPTLRTIVNQFDENNKRPTGFQLPGQNSAEELDADFNCENGADGEEYDNGATWSDDHDDQPVIADLGSNDVDPSFPSYPQENEQFPSTDSDMDDRFENVDGFLFLSLGFNSKHNAWAGPDHWKYKKSKVSEVQPTSEDGSTLKPRQTKTKKQAEVDLDFTNSLEKDLSDIFAPPKNPKTLLLPESRPPCNTKLPEDCHYQPEELVKLFLLPDVKVVFFFVDQKKVVSCLGRRAKRFSDCISSLGAFADADGSRDQFNENDPFPSWDNGSACGGDEAGDYEGDHHSDIEDPGTLITQPRQVSKIEVQYDKTSKQVDVQVLKVTLWDHVQASVKLPPVQGQEEIVSFKNLLANFPGECNAAANISDISPHLCFICLLHLANEKGLSIQSFPNLDDLSICLPPVGDTH*