Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007875.01.T01 | MBA0687432.1 | 94.737 | 95 | 5 | 0 | 1 | 95 | 1 | 95 | 1.14E-59 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007875.01.T01 | O04267 | 97.753 | 89 | 2 | 0 | 1 | 89 | 1 | 89 | 2.64E-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007875.01.T01 | A0A7J8XJQ5 | 94.737 | 95 | 5 | 0 | 1 | 95 | 1 | 95 | 5.47e-60 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049038.01 | MsG0280007875.01 | -0.808513 | 2.984384e-50 | 1.709770e-47 |
| MsG0180000367.01 | MsG0280007875.01 | 0.801373 | 9.285141e-49 | 4.427012e-46 |
| MsG0180003375.01 | MsG0280007875.01 | 0.813764 | 2.170321e-51 | 1.429832e-48 |
| MsG0180003484.01 | MsG0280007875.01 | 0.811604 | 6.441991e-51 | 4.004998e-48 |
| MsG0180004705.01 | MsG0280007875.01 | 0.809204 | 2.124072e-50 | 1.239411e-47 |
| MsG0180005757.01 | MsG0280007875.01 | 0.800731 | 1.256026e-48 | 5.891974e-46 |
| MsG0280007786.01 | MsG0280007875.01 | 0.822588 | 2.185898e-53 | 1.837654e-50 |
| MsG0280007875.01 | MsG0280009167.01 | 0.817318 | 3.509125e-52 | 2.547058e-49 |
| MsG0280007875.01 | MsG0380012913.01 | 0.807018 | 6.203332e-50 | 3.417620e-47 |
| MsG0280007875.01 | MsG0380012918.01 | 0.810582 | 1.073199e-50 | 6.493914e-48 |
| MsG0280007875.01 | MsG0380015434.01 | 0.822079 | 2.869642e-53 | 2.377261e-50 |
| MsG0280007875.01 | MsG0380015858.01 | 0.808384 | 3.180787e-50 | 1.816187e-47 |
| MsG0280007875.01 | MsG0380016110.01 | 0.846399 | 2.225347e-59 | 3.825705e-56 |
| MsG0280007875.01 | MsG0380016865.01 | 0.819184 | 1.327072e-52 | 1.014011e-49 |
| MsG0280007875.01 | MsG0480018563.01 | 0.801547 | 8.551655e-49 | 4.095129e-46 |
| MsG0280007875.01 | MsG0480019545.01 | 0.804197 | 2.424543e-49 | 1.242349e-46 |
| MsG0280007875.01 | MsG0480020938.01 | -0.815000 | 1.156875e-51 | 7.881176e-49 |
| MsG0280007875.01 | MsG0480021226.01 | 0.827281 | 1.706439e-54 | 1.639931e-51 |
| MsG0280007875.01 | MsG0480021977.01 | 0.801676 | 8.047732e-49 | 3.866344e-46 |
| MsG0280007875.01 | MsG0480022833.01 | 0.802160 | 6.398954e-49 | 3.112448e-46 |
| MsG0280007875.01 | MsG0480023067.01 | 0.823294 | 1.496352e-53 | 1.283167e-50 |
| MsG0280007875.01 | MsG0480023322.01 | 0.832181 | 1.094344e-55 | 1.213858e-52 |
| MsG0280007875.01 | MsG0480023944.01 | 0.821570 | 3.763404e-53 | 3.073040e-50 |
| MsG0280007875.01 | MsG0580028302.01 | 0.840103 | 1.063544e-57 | 1.499440e-54 |
| MsG0280007875.01 | MsG0680030635.01 | -0.804622 | 1.977767e-49 | 1.024547e-46 |
| MsG0280007875.01 | MsG0680035650.01 | 0.816377 | 5.705186e-52 | 4.035919e-49 |
| MsG0280007875.01 | MsG0780036480.01 | 0.810137 | 1.338613e-50 | 8.005344e-48 |
| MsG0280007875.01 | MsG0780036611.01 | 0.830341 | 3.101392e-55 | 3.258464e-52 |
| MsG0280007875.01 | MsG0780038307.01 | 0.818226 | 2.188709e-52 | 1.628730e-49 |
| MsG0280007875.01 | MsG0780039883.01 | 0.801566 | 8.476532e-49 | 4.061117e-46 |
| MsG0280007875.01 | MsG0780039916.01 | 0.822370 | 2.456278e-53 | 2.052115e-50 |
| MsG0280007875.01 | MsG0780039917.01 | 0.804796 | 1.818957e-49 | 9.466025e-47 |
| MsG0280007875.01 | MsG0780039925.01 | 0.805647 | 1.206567e-49 | 6.417840e-47 |
| MsG0280007875.01 | MsG0780041172.01 | 0.811246 | 7.704322e-51 | 4.744921e-48 |
| MsG0280007875.01 | MsG0780041180.01 | 0.812142 | 4.919822e-51 | 3.103264e-48 |
| MsG0280007875.01 | MsG0780041225.01 | 0.813143 | 2.970980e-51 | 1.924556e-48 |
| MsG0280007875.01 | MsG0780041397.01 | 0.805353 | 1.391062e-49 | 7.343293e-47 |
| MsG0280007875.01 | MsG0880042122.01 | 0.811859 | 5.669776e-51 | 3.548850e-48 |
| MsG0280007875.01 | MsG0880042441.01 | 0.813754 | 2.181388e-51 | 1.436756e-48 |
| MsG0280007875.01 | MsG0880042635.01 | 0.821414 | 4.089142e-53 | 3.324537e-50 |
| MsG0280007875.01 | MsG0880046838.01 | -0.822739 | 2.016217e-53 | 1.702190e-50 |
| MsG0280007875.01 | MsG0880047714.01 | 0.858775 | 6.533177e-63 | 1.686520e-59 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007875.01.T01 | MTR_2g034640 | 98.876 | 89 | 1 | 0 | 1 | 89 | 1 | 89 | 9.14e-61 | 188 |
| MsG0280007875.01.T01 | MTR_4g121860 | 93.258 | 89 | 6 | 0 | 1 | 89 | 1 | 89 | 1.10e-58 | 183 |
| MsG0280007875.01.T01 | MTR_7g112090 | 93.258 | 89 | 6 | 0 | 1 | 89 | 1 | 89 | 9.34e-58 | 181 |
| MsG0280007875.01.T01 | MTR_5g098820 | 71.698 | 53 | 14 | 1 | 39 | 90 | 1 | 53 | 2.81e-19 | 80.5 |
| MsG0280007875.01.T01 | MTR_5g098820 | 68.750 | 48 | 14 | 1 | 44 | 90 | 69 | 116 | 2.43e-15 | 70.1 |
| MsG0280007875.01.T01 | MTR_4g128910 | 43.056 | 72 | 41 | 0 | 18 | 89 | 15 | 86 | 7.08e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007875.01.T01 | AT1G56330 | 97.753 | 89 | 2 | 0 | 1 | 89 | 1 | 89 | 2.82e-60 | 187 |
| MsG0280007875.01.T01 | AT4G02080 | 95.506 | 89 | 4 | 0 | 1 | 89 | 1 | 89 | 2.49e-59 | 185 |
| MsG0280007875.01.T01 | AT3G62560 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 1.04e-58 | 183 |
| MsG0280007875.01.T01 | AT1G09180 | 93.258 | 89 | 6 | 0 | 1 | 89 | 1 | 89 | 1.67e-55 | 175 |
| MsG0280007875.01.T01 | AT2G24765 | 43.056 | 72 | 41 | 0 | 18 | 89 | 15 | 86 | 8.98e-12 | 60.8 |
| MsG0280007875.01.T01 | AT2G24765 | 43.056 | 72 | 41 | 0 | 18 | 89 | 15 | 86 | 6.25e-11 | 59.7 |
Find 42 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAACCAACCCATTCTTT+TGG | 0.265477 | 2:+22174061 | MsG0280007875.01.T01:five_prime_UTR |
| TTCATCTTCGATTGGTTCTA+TGG | 0.267772 | 2:+22174108 | MsG0280007875.01.T01:CDS |
| CTCTGTCTGTTGTGTTGTCT+TGG | 0.283623 | 2:-22173943 | None:intergenic |
| ATCAAATTGCTCGTAGAGTT+TGG | 0.294302 | 2:+22174412 | MsG0280007875.01.T01:CDS |
| AGTGTTGTTGTCCGTGATTT+TGG | 0.325020 | 2:+22174989 | MsG0280007875.01.T01:CDS |
| CTTCGGAGGAATTGAGTATT+GGG | 0.328437 | 2:+22174355 | MsG0280007875.01.T01:CDS |
| TGTCTGTATCCGTGTTTCAT+AGG | 0.344036 | 2:+22174768 | MsG0280007875.01.T01:CDS |
| ACACTTCCATTCTCATGAAT+TGG | 0.348179 | 2:+22174954 | MsG0280007875.01.T01:CDS |
| TTCTTGCATCCCTTGGTCTC+TGG | 0.356031 | 2:+22174133 | MsG0280007875.01.T01:CDS |
| TATGGCATTCTTGCATCCCT+TGG | 0.385266 | 2:+22174126 | MsG0280007875.01.T01:CDS |
| CAACCATGTTCATCTTCGAT+TGG | 0.422638 | 2:+22174100 | MsG0280007875.01.T01:exon |
| GAAGCCAAGATTCTCTTCCT+TGG | 0.425299 | 2:+22174162 | MsG0280007875.01.T01:CDS |
| GAGATCTAAACCCAAAAGAA+TGG | 0.439163 | 2:-22174072 | None:intergenic |
| TTCCTTGGTCTTGATAATGC+TGG | 0.455864 | 2:+22174177 | MsG0280007875.01.T01:CDS |
| ACTTCGGAGGAATTGAGTAT+TGG | 0.465946 | 2:+22174354 | MsG0280007875.01.T01:CDS |
| CATCTTTGAGCATATGAAGA+AGG | 0.466211 | 2:-22174209 | None:intergenic |
| TTCCTCCGAAGTAGGATGTT+GGG | 0.479835 | 2:-22174343 | None:intergenic |
| TTGGAAAGATTATTATGCTA+AGG | 0.487117 | 2:+22174431 | MsG0280007875.01.T01:CDS |
| AAGACCAAGGAAGAGAATCT+TGG | 0.490940 | 2:-22174166 | None:intergenic |
| AGATCTAAACCCAAAAGAAT+GGG | 0.505942 | 2:-22174071 | None:intergenic |
| TTGACACCAATTCATGAGAA+TGG | 0.506722 | 2:-22174960 | None:intergenic |
| CATGACATGTGTCGGACACA+TGG | 0.520070 | 2:-22174658 | None:intergenic |
| ATACTCAATTCCTCCGAAGT+AGG | 0.542870 | 2:-22174351 | None:intergenic |
| ATTCCTCCGAAGTAGGATGT+TGG | 0.553310 | 2:-22174344 | None:intergenic |
| TTCAGTGTAATTATAAGTGT+CGG | 0.569208 | 2:-22174705 | None:intergenic |
| CTAAACCCAAAAGAATGGGT+TGG | 0.570954 | 2:-22174067 | None:intergenic |
| TCTTCATATGCTCAAAGATG+AGG | 0.580955 | 2:+22174212 | MsG0280007875.01.T01:CDS |
| ATCTTTGAGCATATGAAGAA+GGG | 0.582029 | 2:-22174208 | None:intergenic |
| CACATGGACATGAGGAGTGT+CGG | 0.589512 | 2:-22174642 | None:intergenic |
| CATAATCATAACCAAAATCA+CGG | 0.598688 | 2:-22175000 | None:intergenic |
| ACCGACCCAACATCCTACTT+CGG | 0.614242 | 2:+22174338 | MsG0280007875.01.T01:CDS |
| CACATGTCATGTTGGATGTG+TGG | 0.614696 | 2:+22174670 | MsG0280007875.01.T01:CDS |
| TTCCAGCATTATCAAGACCA+AGG | 0.615002 | 2:-22174179 | None:intergenic |
| ACATCCAACATGACATGTGT+CGG | 0.616393 | 2:-22174666 | None:intergenic |
| TCCGAAGTAGGATGTTGGGT+CGG | 0.619899 | 2:-22174339 | None:intergenic |
| GTGTCGGACACATGGACATG+AGG | 0.632962 | 2:-22174650 | None:intergenic |
| GTAATTATAAGTGTCGGTGT+CGG | 0.633351 | 2:-22174699 | None:intergenic |
| GTAACTACATGTGTAAGTGT+CGG | 0.641611 | 2:-22174926 | None:intergenic |
| GAACCAATCGAAGATGAACA+TGG | 0.652038 | 2:-22174103 | None:intergenic |
| GTGTCCGACACATGTCATGT+TGG | 0.659396 | 2:+22174662 | MsG0280007875.01.T01:CDS |
| GACCCAACATCCTACTTCGG+AGG | 0.659761 | 2:+22174341 | MsG0280007875.01.T01:CDS |
| AAATCAGCACCTATGAAACA+CGG | 0.686966 | 2:-22174777 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTGGTTTTTAATTTA+GGG | + | Chr2:22174484-22174503 | MsG0280007875.01.T01:CDS | 10.0% |
| !! | ATAAATATAATGATCTATCT+AGG | + | Chr2:22174891-22174910 | MsG0280007875.01.T01:intron | 15.0% |
| !!! | ATTTGTTTGTTATCAATTTT+TGG | + | Chr2:22174470-22174489 | MsG0280007875.01.T01:CDS | 15.0% |
| !!! | CAATTTTTGGTTTTTAATTT+AGG | + | Chr2:22174483-22174502 | MsG0280007875.01.T01:CDS | 15.0% |
| !!! | AAATCGAATTTTGAATCAAA+AGG | - | Chr2:22174262-22174281 | None:intergenic | 20.0% |
| !!! | AAGTTTAAAGCTTTTGATTT+GGG | + | Chr2:22174384-22174403 | MsG0280007875.01.T01:CDS | 20.0% |
| !!! | AATCGAATTTTGAATCAAAA+GGG | - | Chr2:22174261-22174280 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | Chr2:22174733-22174752 | MsG0280007875.01.T01:CDS | 20.0% |
| !!! | TTCATATTTTTAGACTCTAT+TGG | + | Chr2:22174857-22174876 | MsG0280007875.01.T01:intron | 20.0% |
| !!! | TTTTTAATTTAGGGATTAGT+TGG | + | Chr2:22174493-22174512 | MsG0280007875.01.T01:CDS | 20.0% |
| ! | ATAAAAATGTTACAAAGACC+AGG | - | Chr2:22174834-22174853 | None:intergenic | 25.0% |
| ! | CATAATCATAACCAAAATCA+CGG | - | Chr2:22175003-22175022 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | - | Chr2:22174708-22174727 | None:intergenic | 25.0% |
| ! | TTGGAAAGATTATTATGCTA+AGG | + | Chr2:22174431-22174450 | MsG0280007875.01.T01:CDS | 25.0% |
| !!! | CAAGTTTAAAGCTTTTGATT+TGG | + | Chr2:22174383-22174402 | MsG0280007875.01.T01:CDS | 25.0% |
| AGATCTAAACCCAAAAGAAT+GGG | - | Chr2:22174074-22174093 | None:intergenic | 30.0% | |
| ATCTTTGAGCATATGAAGAA+GGG | - | Chr2:22174211-22174230 | None:intergenic | 30.0% | |
| TACTACGATGTTCAAAAACT+TGG | + | Chr2:22175030-22175049 | MsG0280007875.01.T01:CDS | 30.0% | |
| TCAAAAGGGTCAAAGAAAAA+AGG | - | Chr2:22174247-22174266 | None:intergenic | 30.0% | |
| ! | AATTTGTTTCAGCTATTGCA+TGG | + | Chr2:22174567-22174586 | MsG0280007875.01.T01:intron | 30.0% |
| ! | GTTTTGTGAATCTGTGAAAT+GGG | - | Chr2:22174048-22174067 | None:intergenic | 30.0% |
| !!! | TTTAAAGCTTTTGATTTGGG+TGG | + | Chr2:22174387-22174406 | MsG0280007875.01.T01:CDS | 30.0% |
| AAATCAGCACCTATGAAACA+CGG | - | Chr2:22174780-22174799 | None:intergenic | 35.0% | |
| ACACTTCCATTCTCATGAAT+TGG | + | Chr2:22174954-22174973 | MsG0280007875.01.T01:CDS | 35.0% | |
| ATCAAATTGCTCGTAGAGTT+TGG | + | Chr2:22174412-22174431 | MsG0280007875.01.T01:CDS | 35.0% | |
| CATCTTTGAGCATATGAAGA+AGG | - | Chr2:22174212-22174231 | None:intergenic | 35.0% | |
| GAGATCTAAACCCAAAAGAA+TGG | - | Chr2:22174075-22174094 | None:intergenic | 35.0% | |
| GTAACTACATGTGTAAGTGT+CGG | - | Chr2:22174929-22174948 | None:intergenic | 35.0% | |
| GTTTGTGAAAGTCTGTTGAA+AGG | + | Chr2:22174537-22174556 | MsG0280007875.01.T01:intron | 35.0% | |
| TCTTCATATGCTCAAAGATG+AGG | + | Chr2:22174212-22174231 | MsG0280007875.01.T01:CDS | 35.0% | |
| TGAAAGTCTGTTGAAAGGTT+TGG | + | Chr2:22174542-22174561 | MsG0280007875.01.T01:intron | 35.0% | |
| TTGACACCAATTCATGAGAA+TGG | - | Chr2:22174963-22174982 | None:intergenic | 35.0% | |
| ! | ACAAAACCAACCCATTCTTT+TGG | + | Chr2:22174061-22174080 | MsG0280007875.01.T01:five_prime_UTR | 35.0% |
| ! | CAAAACCAACCCATTCTTTT+GGG | + | Chr2:22174062-22174081 | MsG0280007875.01.T01:five_prime_UTR | 35.0% |
| !! | GGTTTTGTGAATCTGTGAAA+TGG | - | Chr2:22174049-22174068 | None:intergenic | 35.0% |
| !! | GTAATTATAAGTGTCGGTGT+CGG | - | Chr2:22174702-22174721 | None:intergenic | 35.0% |
| !! | TTCATCTTCGATTGGTTCTA+TGG | + | Chr2:22174108-22174127 | MsG0280007875.01.T01:CDS | 35.0% |
| !!! | CTGATTTGTTTTCAGTTGGA+TGG | + | Chr2:22174793-22174812 | MsG0280007875.01.T01:intron | 35.0% |
| AAGACCAAGGAAGAGAATCT+TGG | - | Chr2:22174169-22174188 | None:intergenic | 40.0% | |
| ACATCCAACATGACATGTGT+CGG | - | Chr2:22174669-22174688 | None:intergenic | 40.0% | |
| ACTTCGGAGGAATTGAGTAT+TGG | + | Chr2:22174354-22174373 | MsG0280007875.01.T01:CDS | 40.0% | |
| ATACTCAATTCCTCCGAAGT+AGG | - | Chr2:22174354-22174373 | None:intergenic | 40.0% | |
| CAACCATGTTCATCTTCGAT+TGG | + | Chr2:22174100-22174119 | MsG0280007875.01.T01:exon | 40.0% | |
| CTAAACCCAAAAGAATGGGT+TGG | - | Chr2:22174070-22174089 | None:intergenic | 40.0% | |
| CTTCGGAGGAATTGAGTATT+GGG | + | Chr2:22174355-22174374 | MsG0280007875.01.T01:CDS | 40.0% | |
| GAACCAATCGAAGATGAACA+TGG | - | Chr2:22174106-22174125 | None:intergenic | 40.0% | |
| TGTCTGTATCCGTGTTTCAT+AGG | + | Chr2:22174768-22174787 | MsG0280007875.01.T01:CDS | 40.0% | |
| TTCCAGCATTATCAAGACCA+AGG | - | Chr2:22174182-22174201 | None:intergenic | 40.0% | |
| ! | TTCTTTTTGCCAGAGACCAA+GGG | - | Chr2:22174145-22174164 | None:intergenic | 40.0% |
| !! | AGTGTTGTTGTCCGTGATTT+TGG | + | Chr2:22174989-22175008 | MsG0280007875.01.T01:CDS | 40.0% |
| !! | TTCCTTGGTCTTGATAATGC+TGG | + | Chr2:22174177-22174196 | MsG0280007875.01.T01:CDS | 40.0% |
| !!! | GGTGCTGATTTGTTTTCAGT+TGG | + | Chr2:22174789-22174808 | MsG0280007875.01.T01:intron | 40.0% |
| AGTTGGATGGATCTGTTGAC+AGG | + | Chr2:22174806-22174825 | MsG0280007875.01.T01:intron | 45.0% | |
| ATTCCTCCGAAGTAGGATGT+TGG | - | Chr2:22174347-22174366 | None:intergenic | 45.0% | |
| CACATGTCATGTTGGATGTG+TGG | + | Chr2:22174670-22174689 | MsG0280007875.01.T01:CDS | 45.0% | |
| CTCTGTCTGTTGTGTTGTCT+TGG | - | Chr2:22173946-22173965 | None:intergenic | 45.0% | |
| GAAGCCAAGATTCTCTTCCT+TGG | + | Chr2:22174162-22174181 | MsG0280007875.01.T01:CDS | 45.0% | |
| TATGGCATTCTTGCATCCCT+TGG | + | Chr2:22174126-22174145 | MsG0280007875.01.T01:CDS | 45.0% | |
| TTCCTCCGAAGTAGGATGTT+GGG | - | Chr2:22174346-22174365 | None:intergenic | 45.0% | |
| ! | CTTCTTTTTGCCAGAGACCA+AGG | - | Chr2:22174146-22174165 | None:intergenic | 45.0% |
| ACCGACCCAACATCCTACTT+CGG | + | Chr2:22174338-22174357 | MsG0280007875.01.T01:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | Chr2:22173983-22174002 | None:intergenic | 50.0% | |
| CATGACATGTGTCGGACACA+TGG | - | Chr2:22174661-22174680 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTGT+AGG | + | Chr2:22173997-22174016 | MsG0280007875.01.T01:five_prime_UTR | 50.0% | |
| GTGTCCGACACATGTCATGT+TGG | + | Chr2:22174662-22174681 | MsG0280007875.01.T01:CDS | 50.0% | |
| TCCGAAGTAGGATGTTGGGT+CGG | - | Chr2:22174342-22174361 | None:intergenic | 50.0% | |
| TGGATCTGTTGACAGGTTCC+TGG | + | Chr2:22174813-22174832 | MsG0280007875.01.T01:intron | 50.0% | |
| TTCTTGCATCCCTTGGTCTC+TGG | + | Chr2:22174133-22174152 | MsG0280007875.01.T01:CDS | 50.0% | |
| ! | CACATGGACATGAGGAGTGT+CGG | - | Chr2:22174645-22174664 | None:intergenic | 50.0% |
| GACCCAACATCCTACTTCGG+AGG | + | Chr2:22174341-22174360 | MsG0280007875.01.T01:CDS | 55.0% | |
| GTGTCGGACACATGGACATG+AGG | - | Chr2:22174653-22174672 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 22173930 | 22175063 | 22173930 | ID=MsG0280007875.01;Name=MsG0280007875.01 |
| Chr2 | mRNA | 22173930 | 22175063 | 22173930 | ID=MsG0280007875.01.T01;Parent=MsG0280007875.01;Name=MsG0280007875.01.T01;_AED=0.37;_eAED=0.65;_QI=175|0.33|0.25|1|1|1|4|0|211 |
| Chr2 | exon | 22173930 | 22174233 | 22173930 | ID=MsG0280007875.01.T01:exon:2879;Parent=MsG0280007875.01.T01 |
| Chr2 | exon | 22174321 | 22174526 | 22174321 | ID=MsG0280007875.01.T01:exon:2880;Parent=MsG0280007875.01.T01 |
| Chr2 | exon | 22174640 | 22174789 | 22174640 | ID=MsG0280007875.01.T01:exon:2881;Parent=MsG0280007875.01.T01 |
| Chr2 | exon | 22174913 | 22175063 | 22174913 | ID=MsG0280007875.01.T01:exon:2882;Parent=MsG0280007875.01.T01 |
| Chr2 | five_prime_UTR | 22173930 | 22174104 | 22173930 | ID=MsG0280007875.01.T01:five_prime_utr;Parent=MsG0280007875.01.T01 |
| Chr2 | CDS | 22174105 | 22174233 | 22174105 | ID=MsG0280007875.01.T01:cds;Parent=MsG0280007875.01.T01 |
| Chr2 | CDS | 22174321 | 22174526 | 22174321 | ID=MsG0280007875.01.T01:cds;Parent=MsG0280007875.01.T01 |
| Chr2 | CDS | 22174640 | 22174789 | 22174640 | ID=MsG0280007875.01.T01:cds;Parent=MsG0280007875.01.T01 |
| Chr2 | CDS | 22174913 | 22175063 | 22174913 | ID=MsG0280007875.01.T01:cds;Parent=MsG0280007875.01.T01 |
| Gene Sequence |
| Protein sequence |
