Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041225.01.T01 | XP_013450274.1 | 93.197 | 147 | 10 | 0 | 3 | 149 | 175 | 321 | 1.29E-95 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041225.01.T01 | Q9FG13 | 60.584 | 137 | 53 | 1 | 9 | 144 | 189 | 325 | 3.81E-53 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041225.01.T01 | A0A072U3J9 | 93.197 | 147 | 10 | 0 | 3 | 149 | 175 | 321 | 6.17e-96 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048652.01 | MsG0780041225.01 | 0.813455 | 2.537047e-51 | 1.657694e-48 |
| MsG0080049015.01 | MsG0780041225.01 | -0.803267 | 3.781617e-49 | 1.892011e-46 |
| MsG0080049038.01 | MsG0780041225.01 | -0.811083 | 8.358179e-51 | 5.125691e-48 |
| MsG0180001079.01 | MsG0780041225.01 | 0.800451 | 1.432168e-48 | 6.670748e-46 |
| MsG0180001264.01 | MsG0780041225.01 | 0.810234 | 1.275762e-50 | 7.648721e-48 |
| MsG0180001513.01 | MsG0780041225.01 | 0.806928 | 6.481138e-50 | 3.562381e-47 |
| MsG0180001996.01 | MsG0780041225.01 | 0.800404 | 1.464253e-48 | 6.812301e-46 |
| MsG0180002935.01 | MsG0780041225.01 | 0.829088 | 6.260227e-55 | 6.341489e-52 |
| MsG0180003372.01 | MsG0780041225.01 | 0.803246 | 3.820851e-49 | 1.910584e-46 |
| MsG0180003375.01 | MsG0780041225.01 | 0.842246 | 2.907989e-58 | 4.382447e-55 |
| MsG0180003484.01 | MsG0780041225.01 | 0.819250 | 1.281642e-52 | 9.811136e-50 |
| MsG0180003779.01 | MsG0780041225.01 | -0.802484 | 5.489857e-49 | 2.692312e-46 |
| MsG0180003908.01 | MsG0780041225.01 | -0.809012 | 2.334920e-50 | 1.355332e-47 |
| MsG0180004121.01 | MsG0780041225.01 | 0.815141 | 1.076311e-51 | 7.360006e-49 |
| MsG0180005127.01 | MsG0780041225.01 | 0.833230 | 6.008273e-56 | 6.876367e-53 |
| MsG0180005146.01 | MsG0780041225.01 | 0.842116 | 3.147124e-58 | 4.723837e-55 |
| MsG0180005353.01 | MsG0780041225.01 | 0.810070 | 1.383962e-50 | 8.262234e-48 |
| MsG0180005720.01 | MsG0780041225.01 | 0.826829 | 2.188756e-54 | 2.075701e-51 |
| MsG0180005817.01 | MsG0780041225.01 | -0.807483 | 4.944830e-50 | 2.757456e-47 |
| MsG0780040553.01 | MsG0780041225.01 | 0.811422 | 7.057368e-51 | 4.366771e-48 |
| MsG0780040977.01 | MsG0780041225.01 | 0.834646 | 2.657272e-56 | 3.173060e-53 |
| MsG0780040991.01 | MsG0780041225.01 | 0.824221 | 9.075379e-54 | 7.989025e-51 |
| MsG0780041079.01 | MsG0780041225.01 | 0.802798 | 4.728792e-49 | 2.337809e-46 |
| MsG0780041100.01 | MsG0780041225.01 | 0.805279 | 1.441449e-49 | 7.594642e-47 |
| MsG0780041172.01 | MsG0780041225.01 | 0.805541 | 1.269868e-49 | 6.735922e-47 |
| MsG0780041225.01 | MsG0780041226.01 | 0.900501 | 6.876730e-78 | 8.920545e-74 |
| MsG0780041225.01 | MsG0780041720.01 | -0.801764 | 7.719036e-49 | 3.716716e-46 |
| MsG0780041225.01 | MsG0880042122.01 | 0.810542 | 1.094515e-50 | 6.615649e-48 |
| MsG0780041225.01 | MsG0880042441.01 | 0.809366 | 1.960515e-50 | 1.148915e-47 |
| MsG0780041225.01 | MsG0880043261.01 | 0.857213 | 1.902943e-62 | 4.661313e-59 |
| MsG0780041225.01 | MsG0880043317.01 | 0.811302 | 7.491741e-51 | 4.620686e-48 |
| MsG0780041225.01 | MsG0880043364.01 | 0.812371 | 4.385866e-51 | 2.783570e-48 |
| MsG0780041225.01 | MsG0880044855.01 | 0.842263 | 2.876413e-58 | 4.337525e-55 |
| MsG0780041225.01 | MsG0880045804.01 | 0.840703 | 7.410050e-58 | 1.064237e-54 |
| MsG0780041225.01 | MsG0880046838.01 | -0.836768 | 7.710233e-57 | 9.813946e-54 |
| MsG0780041225.01 | MsG0880047318.01 | -0.800136 | 1.660696e-48 | 7.673492e-46 |
| MsG0780041225.01 | MsG0880047493.01 | 0.810840 | 9.434062e-51 | 5.748373e-48 |
| MsG0780041225.01 | MsG0880047664.01 | 0.816643 | 4.975065e-52 | 3.545023e-49 |
| MsG0780041225.01 | MsG0880047697.01 | 0.810609 | 1.058458e-50 | 6.409472e-48 |
| MsG0780041225.01 | MsG0880047714.01 | 0.866038 | 3.818608e-65 | 1.268963e-61 |
| MsG0780041225.01 | MsG0880047720.01 | 0.839353 | 1.667348e-57 | 2.296697e-54 |
| MsG0280011016.01 | MsG0780041225.01 | 0.807334 | 5.317446e-50 | 2.953790e-47 |
| MsG0280011050.01 | MsG0780041225.01 | 0.814199 | 1.739498e-51 | 1.159621e-48 |
| MsG0280011267.01 | MsG0780041225.01 | 0.808691 | 2.734672e-50 | 1.573930e-47 |
| MsG0380011974.01 | MsG0780041225.01 | 0.829648 | 4.577787e-55 | 4.714226e-52 |
| MsG0380012329.01 | MsG0780041225.01 | 0.806814 | 6.851588e-50 | 3.754980e-47 |
| MsG0380012913.01 | MsG0780041225.01 | 0.808028 | 3.788165e-50 | 2.142674e-47 |
| MsG0380013226.01 | MsG0780041225.01 | 0.816014 | 6.879177e-52 | 4.818426e-49 |
| MsG0380013272.01 | MsG0780041225.01 | 0.801818 | 7.523929e-49 | 3.627921e-46 |
| MsG0380014410.01 | MsG0780041225.01 | 0.833056 | 6.639078e-56 | 7.559332e-53 |
| MsG0680031464.01 | MsG0780041225.01 | 0.825356 | 4.902012e-54 | 4.457527e-51 |
| MsG0680031841.01 | MsG0780041225.01 | 0.815088 | 1.105758e-51 | 7.550706e-49 |
| MsG0480018563.01 | MsG0780041225.01 | 0.813437 | 2.560673e-51 | 1.672240e-48 |
| MsG0480019588.01 | MsG0780041225.01 | 0.807568 | 4.743608e-50 | 2.650983e-47 |
| MsG0480019666.01 | MsG0780041225.01 | 0.818087 | 2.354069e-52 | 1.745031e-49 |
| MsG0480019923.01 | MsG0780041225.01 | 0.801668 | 8.077757e-49 | 3.880055e-46 |
| MsG0480020814.01 | MsG0780041225.01 | 0.802592 | 5.215749e-49 | 2.564989e-46 |
| MsG0480020958.01 | MsG0780041225.01 | 0.818951 | 1.499258e-52 | 1.138385e-49 |
| MsG0480021226.01 | MsG0780041225.01 | 0.803427 | 3.504898e-49 | 1.760780e-46 |
| MsG0480021600.01 | MsG0780041225.01 | 0.815219 | 1.034016e-51 | 7.085887e-49 |
| MsG0480021604.01 | MsG0780041225.01 | 0.805576 | 1.248903e-49 | 6.630716e-47 |
| MsG0480022142.01 | MsG0780041225.01 | 0.824964 | 6.067589e-54 | 5.456640e-51 |
| MsG0480022428.01 | MsG0780041225.01 | 0.823555 | 1.300248e-53 | 1.123248e-50 |
| MsG0480022833.01 | MsG0780041225.01 | 0.824275 | 8.817799e-54 | 7.773532e-51 |
| MsG0480023067.01 | MsG0780041225.01 | 0.848627 | 5.435007e-60 | 1.003429e-56 |
| MsG0480023195.01 | MsG0780041225.01 | 0.803435 | 3.491462e-49 | 1.754376e-46 |
| MsG0480023322.01 | MsG0780041225.01 | 0.825572 | 4.356616e-54 | 3.986094e-51 |
| MsG0580025023.01 | MsG0780041225.01 | 0.801679 | 8.035269e-49 | 3.860637e-46 |
| MsG0580025117.01 | MsG0780041225.01 | 0.898499 | 4.996834e-77 | 5.921291e-73 |
| MsG0380015323.01 | MsG0780041225.01 | 0.809237 | 2.090100e-50 | 1.220639e-47 |
| MsG0380016476.01 | MsG0780041225.01 | 0.810604 | 1.061119e-50 | 6.424798e-48 |
| MsG0380016931.01 | MsG0780041225.01 | -0.810130 | 1.342871e-50 | 8.029460e-48 |
| MsG0380016935.01 | MsG0780041225.01 | -0.803689 | 3.091822e-49 | 1.563774e-46 |
| MsG0380017231.01 | MsG0780041225.01 | 0.810072 | 1.382078e-50 | 8.251538e-48 |
| MsG0480018440.01 | MsG0780041225.01 | 0.811927 | 5.481427e-51 | 3.437033e-48 |
| MsG0580026162.01 | MsG0780041225.01 | 0.812825 | 3.488156e-51 | 2.240382e-48 |
| MsG0580029623.01 | MsG0780041225.01 | 0.812273 | 4.606469e-51 | 2.916025e-48 |
| MsG0580030019.01 | MsG0780041225.01 | 0.802348 | 5.853844e-49 | 2.861063e-46 |
| MsG0680030635.01 | MsG0780041225.01 | -0.806587 | 7.652230e-50 | 4.169148e-47 |
| MsG0280006485.01 | MsG0780041225.01 | 0.800115 | 1.676346e-48 | 7.741804e-46 |
| MsG0280007786.01 | MsG0780041225.01 | 0.850774 | 1.366463e-60 | 2.706236e-57 |
| MsG0280007875.01 | MsG0780041225.01 | 0.813143 | 2.970980e-51 | 1.924556e-48 |
| MsG0280009656.01 | MsG0780041225.01 | 0.839135 | 1.898542e-57 | 2.597411e-54 |
| MsG0280010296.01 | MsG0780041225.01 | 0.804836 | 1.783823e-49 | 9.293094e-47 |
| MsG0680035841.01 | MsG0780041225.01 | 0.811906 | 5.536928e-51 | 3.470065e-48 |
| MsG0780037751.01 | MsG0780041225.01 | 0.847057 | 1.470952e-59 | 2.582822e-56 |
| MsG0780038305.01 | MsG0780041225.01 | 0.808929 | 2.432069e-50 | 1.408568e-47 |
| MsG0780038307.01 | MsG0780041225.01 | 0.813165 | 2.937836e-51 | 1.904196e-48 |
| MsG0780038985.01 | MsG0780041225.01 | 0.820313 | 7.325853e-53 | 5.776550e-50 |
| MsG0780039237.01 | MsG0780041225.01 | 0.808585 | 2.881171e-50 | 1.653680e-47 |
| MsG0780039431.01 | MsG0780041225.01 | 0.842200 | 2.989678e-58 | 4.498954e-55 |
| MsG0780039916.01 | MsG0780041225.01 | 0.801004 | 1.104572e-48 | 5.218022e-46 |
| MsG0780039917.01 | MsG0780041225.01 | 0.818725 | 1.687652e-52 | 1.273282e-49 |
| MsG0780039923.01 | MsG0780041225.01 | 0.828256 | 9.944457e-55 | 9.831846e-52 |
| MsG0780039925.01 | MsG0780041225.01 | 0.803058 | 4.177506e-49 | 2.078848e-46 |
| MsG0780040034.01 | MsG0780041225.01 | 0.810697 | 1.013447e-50 | 6.151458e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041225.01.T01 | MTR_7g107040 | 93.197 | 147 | 10 | 0 | 3 | 149 | 175 | 321 | 1.56e-99 | 289 |
| MsG0780041225.01.T01 | MTR_4g050140 | 60.839 | 143 | 55 | 1 | 3 | 144 | 173 | 315 | 5.69e-58 | 183 |
| MsG0780041225.01.T01 | MTR_7g406880 | 34.694 | 147 | 86 | 5 | 9 | 146 | 206 | 351 | 3.79e-22 | 90.5 |
| MsG0780041225.01.T01 | MTR_3g012440 | 36.752 | 117 | 73 | 1 | 9 | 124 | 197 | 313 | 1.38e-20 | 86.3 |
| MsG0780041225.01.T01 | MTR_1g111280 | 34.483 | 145 | 81 | 5 | 9 | 144 | 203 | 342 | 2.58e-19 | 82.8 |
| MsG0780041225.01.T01 | MTR_1g089310 | 38.333 | 120 | 73 | 1 | 6 | 124 | 202 | 321 | 6.98e-18 | 79.0 |
| MsG0780041225.01.T01 | MTR_1g089310 | 38.333 | 120 | 73 | 1 | 6 | 124 | 218 | 337 | 7.17e-18 | 79.0 |
| MsG0780041225.01.T01 | MTR_8g035500 | 37.143 | 140 | 81 | 6 | 9 | 145 | 183 | 318 | 3.50e-17 | 76.6 |
| MsG0780041225.01.T01 | MTR_6g065110 | 32.394 | 142 | 90 | 3 | 6 | 144 | 196 | 334 | 5.68e-17 | 76.3 |
| MsG0780041225.01.T01 | MTR_6g065370 | 31.507 | 146 | 94 | 3 | 6 | 148 | 195 | 337 | 7.13e-17 | 75.9 |
| MsG0780041225.01.T01 | MTR_7g093950 | 38.983 | 118 | 69 | 3 | 10 | 124 | 210 | 327 | 1.74e-16 | 75.1 |
| MsG0780041225.01.T01 | MTR_6g065430 | 31.724 | 145 | 94 | 3 | 6 | 146 | 186 | 329 | 2.04e-16 | 74.7 |
| MsG0780041225.01.T01 | MTR_1g082210 | 33.083 | 133 | 85 | 2 | 14 | 142 | 210 | 342 | 4.44e-16 | 73.9 |
| MsG0780041225.01.T01 | MTR_6g065270 | 29.452 | 146 | 97 | 3 | 6 | 148 | 197 | 339 | 6.88e-16 | 73.2 |
| MsG0780041225.01.T01 | MTR_6g065120 | 29.452 | 146 | 97 | 3 | 6 | 148 | 197 | 339 | 3.00e-15 | 71.6 |
| MsG0780041225.01.T01 | MTR_6g065400 | 30.137 | 146 | 96 | 3 | 6 | 148 | 195 | 337 | 5.00e-15 | 70.9 |
| MsG0780041225.01.T01 | MTR_6g464510 | 33.333 | 141 | 86 | 6 | 9 | 144 | 189 | 326 | 6.90e-14 | 67.8 |
| MsG0780041225.01.T01 | MTR_1g102170 | 37.600 | 125 | 72 | 4 | 9 | 128 | 201 | 324 | 1.43e-13 | 67.0 |
| MsG0780041225.01.T01 | MTR_6g065340 | 27.972 | 143 | 87 | 3 | 6 | 148 | 206 | 332 | 2.28e-11 | 60.5 |
| MsG0780041225.01.T01 | MTR_3g101420 | 26.866 | 134 | 93 | 2 | 13 | 144 | 184 | 314 | 5.67e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041225.01.T01 | AT5G06570 | 60.584 | 137 | 53 | 1 | 9 | 144 | 189 | 325 | 3.88e-54 | 173 |
| MsG0780041225.01.T01 | AT5G06570 | 60.584 | 137 | 53 | 1 | 9 | 144 | 189 | 325 | 3.88e-54 | 173 |
| MsG0780041225.01.T01 | AT5G06570 | 60.584 | 137 | 53 | 1 | 9 | 144 | 204 | 340 | 5.21e-54 | 174 |
| MsG0780041225.01.T01 | AT5G06570 | 60.584 | 137 | 53 | 1 | 9 | 144 | 204 | 340 | 5.21e-54 | 174 |
| MsG0780041225.01.T01 | AT3G63010 | 34.167 | 120 | 78 | 1 | 6 | 124 | 203 | 322 | 1.88e-16 | 75.1 |
| MsG0780041225.01.T01 | AT5G27320 | 35.965 | 114 | 72 | 1 | 12 | 124 | 207 | 320 | 2.26e-16 | 74.7 |
| MsG0780041225.01.T01 | AT3G05120 | 34.211 | 114 | 74 | 1 | 12 | 124 | 209 | 322 | 1.41e-15 | 72.4 |
| MsG0780041225.01.T01 | AT5G16080 | 32.308 | 130 | 80 | 3 | 12 | 138 | 207 | 331 | 2.17e-15 | 72.0 |
| MsG0780041225.01.T01 | AT5G14310 | 31.200 | 125 | 76 | 3 | 9 | 127 | 294 | 414 | 1.07e-11 | 61.6 |
| MsG0780041225.01.T01 | AT5G23530 | 29.197 | 137 | 89 | 3 | 6 | 139 | 191 | 322 | 2.19e-11 | 60.8 |
| MsG0780041225.01.T01 | AT2G45610 | 34.653 | 101 | 65 | 1 | 9 | 108 | 189 | 289 | 4.00e-11 | 60.1 |
Find 33 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGCATGAACTGTTTA+AGG | 0.092720 | 7:+88450587 | None:intergenic |
| AATGAAGCTTGATCCCATTT+TGG | 0.221227 | 7:-88450773 | MsG0780041225.01.T01:CDS |
| ACATAACCTCTTATTCTTAC+AGG | 0.242199 | 7:+88452944 | None:intergenic |
| GCCACCAACTATCACCAAAA+TGG | 0.244462 | 7:+88450759 | None:intergenic |
| AGCTTCATTTGTTCAAGATT+TGG | 0.259469 | 7:+88450787 | None:intergenic |
| TCAAGATTCAATGTTTGTTC+TGG | 0.294664 | 7:+88452866 | None:intergenic |
| TGGAGGACCTTCCTCAGATT+TGG | 0.297434 | 7:+88452886 | None:intergenic |
| CATCCATTGGCGAATCCATT+TGG | 0.361125 | 7:-88450820 | MsG0780041225.01.T01:CDS |
| GCAATGAATTGCTTAAAGAT+AGG | 0.394694 | 7:-88450738 | MsG0780041225.01.T01:CDS |
| ATTGAACCTGTAAGAATAAG+AGG | 0.436336 | 7:-88452950 | MsG0780041225.01.T01:CDS |
| CATTAAATACATTGAGTTTG+AGG | 0.440998 | 7:-88450674 | MsG0780041225.01.T01:CDS |
| GCAACAAGGTTGAAAGGAAT+AGG | 0.450448 | 7:-88450703 | MsG0780041225.01.T01:CDS |
| CCACCAACTATCACCAAAAT+GGG | 0.451123 | 7:+88450760 | None:intergenic |
| ATTAAATACATTGAGTTTGA+GGG | 0.463910 | 7:-88450673 | MsG0780041225.01.T01:CDS |
| ATATTCAGAAACTGCAAAAG+AGG | 0.479398 | 7:-88450620 | MsG0780041225.01.T01:CDS |
| TTTGGACTTCCATGTCCAAA+TGG | 0.481522 | 7:+88450805 | None:intergenic |
| AGATTCAATGTTTGTTCTGG+AGG | 0.507064 | 7:+88452869 | None:intergenic |
| TGATCTCTACTCTCTCCAAC+AGG | 0.510331 | 7:+88450841 | None:intergenic |
| GAGTTTGAGGGGTGTGAACA+TGG | 0.521959 | 7:-88450661 | MsG0780041225.01.T01:CDS |
| AACTATGCAACAAGGTTGAA+AGG | 0.532635 | 7:-88450709 | MsG0780041225.01.T01:CDS |
| CAATGAATTGCTTAAAGATA+GGG | 0.536108 | 7:-88450737 | MsG0780041225.01.T01:CDS |
| TGAATCTTGACTTACTAGAC+AGG | 0.555572 | 7:-88452853 | MsG0780041225.01.T01:intron |
| TGTCCAAATGGATTCGCCAA+TGG | 0.564040 | 7:+88450817 | None:intergenic |
| AGTTTGAGGGGTGTGAACAT+GGG | 0.575990 | 7:-88450660 | MsG0780041225.01.T01:CDS |
| TTAAATACATTGAGTTTGAG+GGG | 0.597234 | 7:-88450672 | MsG0780041225.01.T01:CDS |
| TGGAGGTTGTCAATGCCTGT+TGG | 0.608993 | 7:-88450856 | MsG0780041225.01.T01:CDS |
| TTGGCGAATCCATTTGGACA+TGG | 0.609677 | 7:-88450814 | MsG0780041225.01.T01:CDS |
| TCTAACAGGATTGGATCGAA+CGG | 0.622105 | 7:-88452975 | MsG0780041225.01.T01:intron |
| TAATAATAATAATACATGGA+CGG | 0.623276 | 7:-88453078 | None:intergenic |
| AGAGAGTAGAGATCATCCAT+TGG | 0.627428 | 7:-88450833 | MsG0780041225.01.T01:CDS |
| GGAAGTACGGACCAAATCTG+AGG | 0.652219 | 7:-88452897 | MsG0780041225.01.T01:CDS |
| GTACGGACCAAATCTGAGGA+AGG | 0.656456 | 7:-88452893 | MsG0780041225.01.T01:CDS |
| GGGCTGCAAACTATGCAACA+AGG | 0.691008 | 7:-88450717 | MsG0780041225.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATAAA+GGG | + | Chr7:88452546-88452565 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATAA+AGG | + | Chr7:88452547-88452566 | None:intergenic | 0.0% |
| !! | AAAAAAATATTAAAATAGCA+AGG | - | Chr7:88452448-88452467 | MsG0780041225.01.T01:intron | 10.0% |
| !! | AAAAAATATTAAAATAGCAA+GGG | - | Chr7:88452449-88452468 | MsG0780041225.01.T01:intron | 10.0% |
| !! | AAAATATTATTATCTCTAAT+CGG | - | Chr7:88452154-88452173 | MsG0780041225.01.T01:intron | 10.0% |
| !! | TATATATATATATATATCAG+AGG | + | Chr7:88451133-88451152 | None:intergenic | 10.0% |
| !! | ACAATATTACAATACAAATT+TGG | - | Chr7:88451665-88451684 | MsG0780041225.01.T01:intron | 15.0% |
| !!! | AACTTTTTCTTATAGTAATA+AGG | - | Chr7:88451927-88451946 | MsG0780041225.01.T01:intron | 15.0% |
| !!! | ATATTTTGTTCTAAAATGTT+TGG | - | Chr7:88450946-88450965 | MsG0780041225.01.T01:intron | 15.0% |
| !!! | GATTAGAGATAATAATATTT+TGG | + | Chr7:88452155-88452174 | None:intergenic | 15.0% |
| !!! | TAAAAGAATCATTCATTTTT+AGG | + | Chr7:88451074-88451093 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTAACAACTTT+AGG | - | Chr7:88452264-88452283 | MsG0780041225.01.T01:intron | 15.0% |
| !! | AAGTTGTTAAAGATTAAAAG+AGG | + | Chr7:88452263-88452282 | None:intergenic | 20.0% |
| !! | ACATAAAGTCAACTAAATAT+TGG | + | Chr7:88452007-88452026 | None:intergenic | 20.0% |
| !! | AGTTCAACGAATAAATAATT+TGG | + | Chr7:88451025-88451044 | None:intergenic | 20.0% |
| !! | AGTTGTTAAAGATTAAAAGA+GGG | + | Chr7:88452262-88452281 | None:intergenic | 20.0% |
| !! | ATTAAATACATTGAGTTTGA+GGG | - | Chr7:88452966-88452985 | MsG0780041225.01.T01:CDS | 20.0% |
| !! | ATTTAAATTTCTAACAGGAT+TGG | - | Chr7:88450655-88450674 | MsG0780041225.01.T01:CDS | 20.0% |
| !! | TATCTTTCACTTTGTATTTA+TGG | - | Chr7:88451241-88451260 | MsG0780041225.01.T01:intron | 20.0% |
| !! | TCTTGATTTAAATTTCTAAC+AGG | - | Chr7:88450650-88450669 | MsG0780041225.01.T01:CDS | 20.0% |
| !! | TGTAAAATAGTCAAATGAAT+TGG | - | Chr7:88451354-88451373 | MsG0780041225.01.T01:intron | 20.0% |
| !! | TTAAATCAAGATTAAACTAG+AGG | + | Chr7:88450641-88450660 | None:intergenic | 20.0% |
| !! | TTAGCACATATATGTAAAAT+TGG | + | Chr7:88452722-88452741 | None:intergenic | 20.0% |
| !!! | AATTTTGCACTTTTTTTTAG+AGG | - | Chr7:88451309-88451328 | MsG0780041225.01.T01:intron | 20.0% |
| !!! | AGAATTTCTCATCTAATTTT+CGG | - | Chr7:88450900-88450919 | MsG0780041225.01.T01:intron | 20.0% |
| !!! | ATTTCCAATTTTTCAGATTT+TGG | - | Chr7:88452763-88452782 | MsG0780041225.01.T01:intron | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | Chr7:88451825-88451844 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | Chr7:88451919-88451938 | None:intergenic | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | Chr7:88451830-88451849 | MsG0780041225.01.T01:intron | 20.0% |
| !!! | TTCATTATTTTCAAAGAAGT+TGG | + | Chr7:88451504-88451523 | None:intergenic | 20.0% |
| ! | AAGATTGAAAATCTTTACAC+TGG | + | Chr7:88452504-88452523 | None:intergenic | 25.0% |
| ! | ACGACATTCTTTATTATACT+TGG | + | Chr7:88451703-88451722 | None:intergenic | 25.0% |
| ! | ACTTGTGGTTCATTAAATTA+TGG | - | Chr7:88452324-88452343 | MsG0780041225.01.T01:intron | 25.0% |
| ! | AGAGCTTGAATTTGATATAT+AGG | + | Chr7:88451002-88451021 | None:intergenic | 25.0% |
| ! | ATTGCTTTCAAACTAATAGT+AGG | - | Chr7:88452395-88452414 | MsG0780041225.01.T01:intron | 25.0% |
| ! | CAATGAATTGCTTAAAGATA+GGG | - | Chr7:88452902-88452921 | MsG0780041225.01.T01:CDS | 25.0% |
| ! | CATTAAATACATTGAGTTTG+AGG | - | Chr7:88452965-88452984 | MsG0780041225.01.T01:CDS | 25.0% |
| ! | TAATCTTTAACAACTTTAGG+TGG | - | Chr7:88452267-88452286 | MsG0780041225.01.T01:intron | 25.0% |
| ! | TACAAGTAATATTTACCACA+TGG | + | Chr7:88452424-88452443 | None:intergenic | 25.0% |
| ! | TCACTAAGAAATAATGTTAG+TGG | + | Chr7:88450591-88450610 | None:intergenic | 25.0% |
| ! | TGTCATGGAAATTGAATATT+TGG | + | Chr7:88451786-88451805 | None:intergenic | 25.0% |
| ! | TTAAATACATTGAGTTTGAG+GGG | - | Chr7:88452967-88452986 | MsG0780041225.01.T01:CDS | 25.0% |
| ! | TTATAAAGGGTTCTATGATT+TGG | + | Chr7:88452533-88452552 | None:intergenic | 25.0% |
| ! | TTTCTTATAGTAATAAGGAC+CGG | - | Chr7:88451932-88451951 | MsG0780041225.01.T01:intron | 25.0% |
| !! | AATAAGAGGTTATGTTTTGT+TGG | - | Chr7:88450703-88450722 | MsG0780041225.01.T01:CDS | 25.0% |
| !! | CTTTGAAAATAATGAAGCAT+TGG | - | Chr7:88451508-88451527 | MsG0780041225.01.T01:intron | 25.0% |
| !! | GATGGTTCTTATTTAAAGTT+AGG | - | Chr7:88452192-88452211 | MsG0780041225.01.T01:intron | 25.0% |
| !! | TACTATTAGTTTGAAAGCAA+TGG | + | Chr7:88452396-88452415 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | Chr7:88451820-88451839 | None:intergenic | 25.0% |
| !!! | CTTGCTAACAAGTTTTTTTA+AGG | + | Chr7:88452130-88452149 | None:intergenic | 25.0% |
| !!! | TAGAAGTATCTAGATCATAT+TGG | + | Chr7:88450614-88450633 | None:intergenic | 25.0% |
| !!! | TCATCAACTTTTTCCAATAT+AGG | - | Chr7:88452367-88452386 | MsG0780041225.01.T01:intron | 25.0% |
| AAAGCAATGGAAACCTATAT+TGG | + | Chr7:88452383-88452402 | None:intergenic | 30.0% | |
| ACATAACCTCTTATTCTTAC+AGG | + | Chr7:88450698-88450717 | None:intergenic | 30.0% | |
| ACCTCCAAAATCTGAAAAAT+TGG | + | Chr7:88452770-88452789 | None:intergenic | 30.0% | |
| AGAGCCACATTATAATATTG+TGG | + | Chr7:88451416-88451435 | None:intergenic | 30.0% | |
| AGCTTCATTTGTTCAAGATT+TGG | + | Chr7:88452855-88452874 | None:intergenic | 30.0% | |
| ATATTCAGAAACTGCAAAAG+AGG | - | Chr7:88453019-88453038 | MsG0780041225.01.T01:intron | 30.0% | |
| ATTGAACCTGTAAGAATAAG+AGG | - | Chr7:88450689-88450708 | MsG0780041225.01.T01:CDS | 30.0% | |
| CAAAACTAAAACAAGTGAAG+TGG | + | Chr7:88451604-88451623 | None:intergenic | 30.0% | |
| GAGCCACATTATAATATTGT+GGG | + | Chr7:88451415-88451434 | None:intergenic | 30.0% | |
| GCAATGAATTGCTTAAAGAT+AGG | - | Chr7:88452901-88452920 | MsG0780041225.01.T01:CDS | 30.0% | |
| TCAAGATTCAATGTTTGTTC+TGG | + | Chr7:88450776-88450795 | None:intergenic | 30.0% | |
| TCTCTAATCGGACAATATTA+TGG | - | Chr7:88452166-88452185 | MsG0780041225.01.T01:intron | 30.0% | |
| ! | TTTGAAGCATGAACTGTTTA+AGG | + | Chr7:88453055-88453074 | None:intergenic | 30.0% |
| !! | TCCAATTTTTCAGATTTTGG+AGG | - | Chr7:88452766-88452785 | MsG0780041225.01.T01:intron | 30.0% |
| !!! | CACTTCACTTGTTTTAGTTT+TGG | - | Chr7:88451602-88451621 | MsG0780041225.01.T01:intron | 30.0% |
| !!! | GTACGTGTAGCATTTTTTTT+AGG | + | Chr7:88452479-88452498 | None:intergenic | 30.0% |
| !!! | TTTTAGTTTTGGCCTTATCT+GGG | - | Chr7:88451613-88451632 | MsG0780041225.01.T01:intron | 30.0% |
| AACTATGCAACAAGGTTGAA+AGG | - | Chr7:88452930-88452949 | MsG0780041225.01.T01:CDS | 35.0% | |
| AATACTTACCTCGTTCATTC+TGG | - | Chr7:88451178-88451197 | MsG0780041225.01.T01:intron | 35.0% | |
| ACTAATAGTAGGTTTCCATG+TGG | - | Chr7:88452406-88452425 | MsG0780041225.01.T01:intron | 35.0% | |
| AGATTCAATGTTTGTTCTGG+AGG | + | Chr7:88450773-88450792 | None:intergenic | 35.0% | |
| AGTGAAGTGGTTGTGTTTAT+TGG | + | Chr7:88451591-88451610 | None:intergenic | 35.0% | |
| CATGGACGTAGGTAATTAAA+TGG | - | Chr7:88451562-88451581 | MsG0780041225.01.T01:intron | 35.0% | |
| CATTGGTATCCAAAGTTATC+TGG | - | Chr7:88451525-88451544 | MsG0780041225.01.T01:intron | 35.0% | |
| CATTTAATTACCTACGTCCA+TGG | + | Chr7:88451564-88451583 | None:intergenic | 35.0% | |
| CCACATTATAATATTGTGGG+TGG | + | Chr7:88451412-88451431 | None:intergenic | 35.0% | |
| CCACCCACAATATTATAATG+TGG | - | Chr7:88451409-88451428 | MsG0780041225.01.T01:intron | 35.0% | |
| CGGACAATATTATGGAATGA+TGG | - | Chr7:88452174-88452193 | MsG0780041225.01.T01:intron | 35.0% | |
| CGGTAGAATCATGAATTGAA+TGG | - | Chr7:88450920-88450939 | MsG0780041225.01.T01:intron | 35.0% | |
| GTGAAGTGGTTGTGTTTATT+GGG | + | Chr7:88451590-88451609 | None:intergenic | 35.0% | |
| TGAAGTGGTTGTGTTTATTG+GGG | + | Chr7:88451589-88451608 | None:intergenic | 35.0% | |
| TGAATCTTGACTTACTAGAC+AGG | - | Chr7:88450786-88450805 | MsG0780041225.01.T01:CDS | 35.0% | |
| TTATAGTAATAAGGACCGGA+GGG | - | Chr7:88451936-88451955 | MsG0780041225.01.T01:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | Chr7:88451816-88451835 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | Chr7:88451817-88451836 | None:intergenic | 35.0% | |
| ! | AATGAAGCTTGATCCCATTT+TGG | - | Chr7:88452866-88452885 | MsG0780041225.01.T01:CDS | 35.0% |
| !!! | GTTTTAGTTTTGGCCTTATC+TGG | - | Chr7:88451612-88451631 | MsG0780041225.01.T01:intron | 35.0% |
| !!! | TGTGGCTCTTTTTTTACAGT+AGG | - | Chr7:88451427-88451446 | MsG0780041225.01.T01:intron | 35.0% |
| AGAGAGTAGAGATCATCCAT+TGG | - | Chr7:88452806-88452825 | MsG0780041225.01.T01:intron | 40.0% | |
| CCACCAACTATCACCAAAAT+GGG | + | Chr7:88452882-88452901 | None:intergenic | 40.0% | |
| CTTATAGTAATAAGGACCGG+AGG | - | Chr7:88451935-88451954 | MsG0780041225.01.T01:intron | 40.0% | |
| GCAACAAGGTTGAAAGGAAT+AGG | - | Chr7:88452936-88452955 | MsG0780041225.01.T01:CDS | 40.0% | |
| TATCCAAAGTTATCTGGCCA+AGG | - | Chr7:88451531-88451550 | MsG0780041225.01.T01:intron | 40.0% | |
| TCTAACAGGATTGGATCGAA+CGG | - | Chr7:88450664-88450683 | MsG0780041225.01.T01:CDS | 40.0% | |
| TGAACAAACCAGAATGAACG+AGG | + | Chr7:88451189-88451208 | None:intergenic | 40.0% | |
| TTGTGGGTGGAAATTGTGAA+CGG | + | Chr7:88451399-88451418 | None:intergenic | 40.0% | |
| TTTGGACTTCCATGTCCAAA+TGG | + | Chr7:88452837-88452856 | None:intergenic | 40.0% | |
| ! | TTTTCACCTAATACTCCCTC+CGG | + | Chr7:88451954-88451973 | None:intergenic | 40.0% |
| !! | GATCCCATTTTGGTGATAGT+TGG | - | Chr7:88452876-88452895 | MsG0780041225.01.T01:CDS | 40.0% |
| CATCCATTGGCGAATCCATT+TGG | - | Chr7:88452819-88452838 | MsG0780041225.01.T01:intron | 45.0% | |
| CTTGACTTACTAGACAGGTG+AGG | - | Chr7:88450791-88450810 | MsG0780041225.01.T01:CDS | 45.0% | |
| GCCACCAACTATCACCAAAA+TGG | + | Chr7:88452883-88452902 | None:intergenic | 45.0% | |
| GCGACATCATGAGAAACTTG+TGG | - | Chr7:88452309-88452328 | MsG0780041225.01.T01:intron | 45.0% | |
| TGATCTCTACTCTCTCCAAC+AGG | + | Chr7:88452801-88452820 | None:intergenic | 45.0% | |
| TTACCTACGTCCATGGCTAT+TGG | + | Chr7:88451557-88451576 | None:intergenic | 45.0% | |
| TTGGCGAATCCATTTGGACA+TGG | - | Chr7:88452825-88452844 | MsG0780041225.01.T01:intron | 45.0% | |
| ! | AACAACTTTAGGTGGTGCCA+TGG | - | Chr7:88452275-88452294 | MsG0780041225.01.T01:intron | 45.0% |
| ! | AGTTTGAGGGGTGTGAACAT+GGG | - | Chr7:88452979-88452998 | MsG0780041225.01.T01:intron | 45.0% |
| ! | TGTCCAAATGGATTCGCCAA+TGG | + | Chr7:88452825-88452844 | None:intergenic | 45.0% |
| !! | CCCATTTTGGTGATAGTTGG+TGG | - | Chr7:88452879-88452898 | MsG0780041225.01.T01:CDS | 45.0% |
| !!! | GTTTTGTTGGCGCCGTTTTT+TGG | - | Chr7:88450716-88450735 | MsG0780041225.01.T01:CDS | 45.0% |
| !!! | AAATTAGAATAAATTATTTT+AGG | + | Chr7:88450848-88450867 | None:intergenic | 5.0% |
| !!! | AATTAGAATAAATTATTTTA+GGG | + | Chr7:88450847-88450866 | None:intergenic | 5.0% |
| CCATGACATCATACTCCCTC+CGG | - | Chr7:88451798-88451817 | MsG0780041225.01.T01:intron | 50.0% | |
| CGTACTTCCCCGCCAAAAAA+CGG | + | Chr7:88450731-88450750 | None:intergenic | 50.0% | |
| GGGCTGCAAACTATGCAACA+AGG | - | Chr7:88452922-88452941 | MsG0780041225.01.T01:CDS | 50.0% | |
| GTACGGACCAAATCTGAGGA+AGG | - | Chr7:88450746-88450765 | MsG0780041225.01.T01:CDS | 50.0% | |
| GTTTCTCATGATGTCGCGTG+TGG | + | Chr7:88452306-88452325 | None:intergenic | 50.0% | |
| TGGAGGACCTTCCTCAGATT+TGG | + | Chr7:88450756-88450775 | None:intergenic | 50.0% | |
| TGGAGGTTGTCAATGCCTGT+TGG | - | Chr7:88452783-88452802 | MsG0780041225.01.T01:intron | 50.0% | |
| ! | GAGTTTGAGGGGTGTGAACA+TGG | - | Chr7:88452978-88452997 | MsG0780041225.01.T01:intron | 50.0% |
| ! | GGAAGTACGGACCAAATCTG+AGG | - | Chr7:88450742-88450761 | MsG0780041225.01.T01:CDS | 50.0% |
| ! | TGGCCTTGGCCAGATAACTT+TGG | + | Chr7:88451537-88451556 | None:intergenic | 50.0% |
| !! | TAAGGACCGGAGGGAGTATT+AGG | - | Chr7:88451945-88451964 | MsG0780041225.01.T01:intron | 50.0% |
| !!! | CGTTTTTTGGCGGGGAAGTA+CGG | - | Chr7:88450729-88450748 | MsG0780041225.01.T01:CDS | 50.0% |
| !!! | TTGTTGGCGCCGTTTTTTGG+CGG | - | Chr7:88450719-88450738 | MsG0780041225.01.T01:CDS | 50.0% |
| AGGCCAATAGCCATGGACGT+AGG | - | Chr7:88451551-88451570 | MsG0780041225.01.T01:intron | 55.0% | |
| GCACGTCACTCTCCCAGATA+AGG | + | Chr7:88451628-88451647 | None:intergenic | 55.0% | |
| TCTCATGATGTCGCGTGTGG+TGG | + | Chr7:88452303-88452322 | None:intergenic | 55.0% | |
| ! | ACGTCCATGGCTATTGGCCT+TGG | + | Chr7:88451551-88451570 | None:intergenic | 55.0% |
| ! | CCGGAGGGAGTATGATGTCA+TGG | + | Chr7:88451801-88451820 | None:intergenic | 55.0% |
| !!! | TGTTGGCGCCGTTTTTTGGC+GGG | - | Chr7:88450720-88450739 | MsG0780041225.01.T01:CDS | 55.0% |
| CTGGCCAAGGCCAATAGCCA+TGG | - | Chr7:88451544-88451563 | MsG0780041225.01.T01:intron | 60.0% | |
| !!! | GTTGGCGCCGTTTTTTGGCG+GGG | - | Chr7:88450721-88450740 | MsG0780041225.01.T01:CDS | 60.0% |
| ! | TGTCGCGTGTGGTGGTGCCA+TGG | + | Chr7:88452295-88452314 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88450576 | 88453085 | 88450576 | ID=MsG0780041225.01;Name=MsG0780041225.01 |
| Chr7 | mRNA | 88450576 | 88453085 | 88450576 | ID=MsG0780041225.01.T01;Parent=MsG0780041225.01;Name=MsG0780041225.01.T01;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|149 |
| Chr7 | exon | 88453079 | 88453085 | 88453079 | ID=MsG0780041225.01.T01:exon:41520;Parent=MsG0780041225.01.T01 |
| Chr7 | exon | 88452854 | 88452989 | 88452854 | ID=MsG0780041225.01.T01:exon:41519;Parent=MsG0780041225.01.T01 |
| Chr7 | exon | 88450576 | 88450882 | 88450576 | ID=MsG0780041225.01.T01:exon:41518;Parent=MsG0780041225.01.T01 |
| Chr7 | CDS | 88453079 | 88453085 | 88453079 | ID=MsG0780041225.01.T01:cds;Parent=MsG0780041225.01.T01 |
| Chr7 | CDS | 88452854 | 88452989 | 88452854 | ID=MsG0780041225.01.T01:cds;Parent=MsG0780041225.01.T01 |
| Chr7 | CDS | 88450576 | 88450882 | 88450576 | ID=MsG0780041225.01.T01:cds;Parent=MsG0780041225.01.T01 |
| Gene Sequence |
| Protein sequence |
