AlfalfaGEDB | MsG0580025411.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025411.01

KEGG: -
GO: GO:0000814 GO:0005515 GO:0008270 GO:0071985
PFAM: PF01535 PF05871 PF13041 PF14432

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025411.01.T01	XP_024639763.1	95.552	562	25	0	1	562	44	605	0	1133
MsG0580025411.01.T01	XP_024639763.1	29.078	282	191	6	94	372	37	312	4.97E-17	98.2

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025411.01.T01	Q9C6T2	59.22	564	228	2	1	562	43	606	0	707

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025411.01.T01	A0A371HNB0	71.683	731	177	7	1	712	44	763	0.0	1049

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0580025411.01	0.830048	3.656110e-55	3.808684e-52
MsG0080048727.01	MsG0580025411.01	0.809854	1.540268e-50	9.143639e-48
MsG0080048773.01	MsG0580025411.01	0.829483	5.019959e-55	5.144367e-52
MsG0080048876.01	MsG0580025411.01	0.837722	4.394322e-57	5.758906e-54
MsG0080049040.01	MsG0580025411.01	0.861930	7.256362e-64	2.087376e-60
MsG0080049063.01	MsG0580025411.01	0.810780	9.722703e-51	5.914589e-48
MsG0080049068.01	MsG0580025411.01	0.850157	2.035436e-60	3.950617e-57
MsG0180000292.01	MsG0580025411.01	0.834314	3.219989e-56	3.807325e-53
MsG0180000354.01	MsG0580025411.01	0.831431	1.675515e-55	1.817806e-52
MsG0180000355.01	MsG0580025411.01	0.801665	8.089974e-49	3.885581e-46

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0480021489.01	MsG0580025411.01	PPI
MsG0480021489.01	MsG0580025411.01	PPI
MsG0580025411.01	MsG0780041221.01	PPI
MsG0580025411.01	MsG0580026450.01	PPI
MsG0580025411.01	MsG0480021489.01	PPI
MsG0580025411.01	MsG0580026175.01	PPI
MsG0580025411.01	MsG0080048865.01	PPI
MsG0580028630.01	MsG0580025411.01	PPI

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025411.01.T01	MTR_5g027980	95.740	446	19	0	117	562	1	446	0.0	900
MsG0580025411.01.T01	MTR_5g027980	26.642	274	156	5	34	301	19	253	3.70e-16	82.0
MsG0580025411.01.T01	MTR_2g018870	41.533	561	327	1	2	562	54	613	9.76e-167	493
MsG0580025411.01.T01	MTR_1g012380	41.812	574	318	7	1	562	31	600	3.53e-157	468
MsG0580025411.01.T01	MTR_7g083820	42.355	569	315	2	5	562	106	672	1.62e-153	461
MsG0580025411.01.T01	MTR_7g083820	27.248	367	221	7	48	369	46	411	7.95e-33	135
MsG0580025411.01.T01	MTR_4g113830	40.609	591	319	5	3	562	149	738	5.95e-150	454
MsG0580025411.01.T01	MTR_4g113830	28.049	410	259	4	1	376	41	448	1.56e-44	171
MsG0580025411.01.T01	MTR_0013s0120	39.714	559	334	3	5	562	2	558	2.09e-147	442
MsG0580025411.01.T01	MTR_2g101710	41.219	558	324	3	5	562	67	620	3.39e-147	443

Showing 1 to 10 of 901 entries

Previous1 2 3 4 5…91Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025411.01.T01	AT1G31920	59.220	564	228	2	1	562	43	606	0.0	707
MsG0580025411.01.T01	AT4G21065	41.623	567	325	6	1	562	30	595	2.85e-159	474
MsG0580025411.01.T01	AT5G48910	37.908	612	329	5	1	562	36	646	4.57e-149	449
MsG0580025411.01.T01	AT5G66520	38.552	594	331	4	2	562	28	620	1.42e-148	447
MsG0580025411.01.T01	AT4G37380	38.255	596	329	6	1	562	42	632	2.25e-148	447
MsG0580025411.01.T01	AT3G46790	40.747	562	326	3	6	562	98	657	5.20e-148	447
MsG0580025411.01.T01	AT3G46790	26.994	326	217	8	57	372	50	364	3.35e-27	117
MsG0580025411.01.T01	AT3G46790	24.815	270	196	5	5	270	202	468	1.66e-22	103
MsG0580025411.01.T01	AT1G08070	38.514	592	332	4	2	562	47	637	1.14e-145	440
MsG0580025411.01.T01	AT1G08070	28.941	387	208	5	59	379	1	386	3.32e-41	160

Showing 1 to 10 of 997 entries

Previous1 2 3 4 5…100Next

Find 144 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGCCGAACGAAACT+TGG	0.438749	5:+18212854	MsG0580025411.01.T01:CDS
AAAGATAATGGACTGGAAGA+TGG	0.556832	5:+18216777	MsG0580025411.01.T01:CDS
AAAGGATAAGTGAATTTATC+AGG	0.349652	5:-18211859	None:intergenic
AAATAACTCAGGCGATTATT+TGG	0.233094	5:+18212773	MsG0580025411.01.T01:CDS
AAATACCACATTTCAAAACA+TGG	0.534106	5:-18211630	None:intergenic
AAATGATTCACCAAATGGAA+TGG	0.552402	5:+18212973	MsG0580025411.01.T01:CDS
AACCTAATGATGTGATTTGG+AGG	0.541535	5:+18212670	MsG0580025411.01.T01:CDS
AACTTGTGCTCTAACAAAAT+GGG	0.415652	5:+18211687	MsG0580025411.01.T01:CDS
AAGACAAGTCTATGCCTCAA+TGG	0.593520	5:+18212937	MsG0580025411.01.T01:CDS
AAGCATACCCTCAGAAACTA+AGG	0.489356	5:-18216496	None:intergenic

Showing 1 to 10 of 144 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACATGGAGAATGGTT+AGG	+	Chr5:18213570-18213589	MsG0580025411.01.T01:intron	30.0%
AAATAACTCAGGCGATTATT+TGG	+	Chr5:18212773-18212792	MsG0580025411.01.T01:CDS	30.0%
AAATACATGGAGAATGGTTA+GGG	+	Chr5:18213571-18213590	MsG0580025411.01.T01:intron	30.0%
AAATGATTCACCAAATGGAA+TGG	+	Chr5:18212973-18212992	MsG0580025411.01.T01:CDS	30.0%
AAATTTATGGGACCTGATAA+AGG	+	Chr5:18213745-18213764	MsG0580025411.01.T01:intron	30.0%
AACTGAAAGATGCAGAAATT+GGG	+	Chr5:18215386-18215405	MsG0580025411.01.T01:intron	30.0%
AACTTGTGCTCTAACAAAAT+GGG	+	Chr5:18211687-18211706	MsG0580025411.01.T01:CDS	30.0%
AATGAATGTGTAATGCTTCT+TGG	+	Chr5:18212114-18212133	MsG0580025411.01.T01:CDS	30.0%
AATTCCAAATATGTTCTGGT+TGG	-	Chr5:18214071-18214090	None:intergenic	30.0%
AATTTCCCTTTCATAGATCA+TGG	-	Chr5:18213204-18213223	None:intergenic	30.0%

Showing 1 to 10 of 335 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	18211604	18217095	18211604	ID=MsG0580025411.01;Name=MsG0580025411.01
Chr5	mRNA	18211604	18217095	18211604	ID=MsG0580025411.01.T01;Parent=MsG0580025411.01;Name=MsG0580025411.01.T01;_AED=0.36;_eAED=0.41;_QI=0\|0.33\|0.28\|1\|1\|1\|7\|0\|727
Chr5	exon	18211604	18213288	18211604	ID=MsG0580025411.01.T01:exon:1965;Parent=MsG0580025411.01.T01
Chr5	exon	18213956	18214031	18213956	ID=MsG0580025411.01.T01:exon:1966;Parent=MsG0580025411.01.T01
Chr5	exon	18214163	18214228	18214163	ID=MsG0580025411.01.T01:exon:1967;Parent=MsG0580025411.01.T01
Chr5	exon	18216441	18216510	18216441	ID=MsG0580025411.01.T01:exon:1968;Parent=MsG0580025411.01.T01
Chr5	exon	18216600	18216688	18216600	ID=MsG0580025411.01.T01:exon:1969;Parent=MsG0580025411.01.T01
Chr5	exon	18216774	18216849	18216774	ID=MsG0580025411.01.T01:exon:1970;Parent=MsG0580025411.01.T01
Chr5	exon	18216974	18217095	18216974	ID=MsG0580025411.01.T01:exon:1971;Parent=MsG0580025411.01.T01
Chr5	CDS	18211604	18213288	18211604	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18213956	18214031	18213956	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18214163	18214228	18214163	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18216441	18216510	18216441	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18216600	18216688	18216600	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18216774	18216849	18216774	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01
Chr5	CDS	18216974	18217095	18216974	ID=MsG0580025411.01.T01:cds;Parent=MsG0580025411.01.T01

Gene Sequence

>MsG0580025411.01.T01

ATGGAAGAATTTAAGCAAGTTCATGCCCATGTTTTGAAATGTGGTATTTTCTTTGATACATTTTGTATGAGCAATCTTGTTGCAACTTGTGCTCTAACAAAATGGGGTAGCATGGATTATGCTTGTTCAATCTTCACTCAGATCGACGAACCGAGTTGTTTTGACTATAACACAATGATTAGAGGGAATGTTAATGACATGAAACTAGAAGAAGCTTTGTTGCTTTATGTTGAACTGATTGAAAGAGGTGTTGAGCCTGATAAATTCACTTATCCTTTTGTTTTAAAAGCTTGTTCTTTATTAGGCGCGTTCGATGAAGGAATTCAAGTTCATGCACATGTTTTTAAGATGGGTCTTGAAGATGATGTCATTGTGCAAAATAGTTTGATCAACATGTATGGTAAATGTGGGGAGATAAAGAATTCTTGTGATGTGTTTAATGGAATGGGTGAAAAGAGTGTTGCTTCATGGAGTGCTATTATTGGTGCTCATGCTTGTGTGGAAATGTGGAATGAATGTGTAATGCTTCTTGGGAAAATGAGTAGTGAAGGAAGGTGTAGGGTTGAAGAAAGCACACTGGTTAATGTGCTCTCTGCTTGCACTCATTTAGGGTCTCCTAATCTTGGAAAGTGTATACATGGGATCTTGTTGAGAAACATTAGTGAACTTAATGTTGTTGTGAAAACTTCATTAATTGATATGTATGTCAAGTGTGGATGTCTTGAGAAAGGTTTACGTGTATTCGAGAATATGTCGGAGAAGAATAGGTTTTCTTACACTGTAATGATATCTGGTCTTGCGATTCATGGACGTGGCAAGGAAGCTCTTAAGGTTTTCTCAGAAATGGTGGAAGAAGGTTTGGCACCAGATGATGTTGTCTATGTCGGCGTATTGAGTGCTTGCAGTCATGCTGGTCTTGTCGACGAGGGTCTACAATGTTTCAAAAGCATGCAATTTGAGCATAAGATTGAACCAACGGTTAAGCATTATGGTTGCATGGTGGATCTGTTGGGAAGATTTGGGATGCTAAAGGAAGCCTATGAACTCGTAAAGAGCATGTCAATTAAACCTAATGATGTGATTTGGAGGAGCCTTTTAAGTGCCTGTAAAGTTCATCATAACTTAGAAATTGGTGAGATTGCAGCCGAGAATCTTTTCATGTTGAATCAAAATAACTCAGGCGATTATTTGGTGCTAGCTAATATGTACGCAAAGGCGCAAAAGTGGGACGATGTAGCCAAGATCAGAACAAAATTGGCCGAACGAAACTTGGTACAAACACCCGGGTTTAGTTTGGTTGAAGCAAAGAGGAAAGTGTACAAGTTTGTTTCACAAGACAAGTCTATGCCTCAATGGAACATAATCTATGAAATGATTCACCAAATGGAATGGCAGCTGAAATTTGAAGGGTATATACCAGATACGTCACAAGTTTTGCTCGATGTAGACGATGAAGAAAAGAAAGAGAGATTGAAATTTCATAGTCAGAAGTTAGCAATTGCTTTTGGATTGATACATACATCTGAGGGTTCTCCTTTAAGAATAACAAGAAATCTTAGGATGTGTAGTGACTGTCATACTTACACTAAATACATTTCCATGATCTATGAAAGGGAAATTACTGTAAGAGATCGTTTCCGTTTCCACCATTTTAAAAATGGAACTTGTACATGTAAAGATTACTGGTCTGCCAGTCCACAACAGGGAACCGTGGTGAGTCTAGGCAGGAGGAAGTTCCCCGATGAAGCAAACCAAATGTCGCCCGAGGTTGCAGTGTGGGGGCTTGCTGAGGCGATCAAGTGGATTGGAGAGTTGGACTTTGACAAGATTTTTGATAGTGCAGGATCTCTTACTAATGAAGCTAGAGAAGCGTTCCTTTCAGCCTTAGTTTCTGAGGGACGAGCAGAATGGATGGATAAAGGACATAGAAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGACATTTTACTACAGTTTGCAAAAGATAATGGACTGGAAGATGGTGTTGTGACAATCGAGGAAATACGCTTTGGGACTGAATCTCAAGGAACAGGACTTAATGTTGATACTTTTTTTGGAATAGATGAGCTACACTCTATCACAAAACAAACATTTAAAATTTTAAAACTGTTTACAAATTTTACTGCTAGTGAAGGACATGAGTTGGTACAATGA

Protein sequence

>MsG0580025411.01.T01

MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSCFDYNTMIRGNVNDMKLEEALLLYVELIERGVEPDKFTYPFVLKACSLLGAFDEGIQVHAHVFKMGLEDDVIVQNSLINMYGKCGEIKNSCDVFNGMGEKSVASWSAIIGAHACVEMWNECVMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPNLGKCIHGILLRNISELNVVVKTSLIDMYVKCGCLEKGLRVFENMSEKNRFSYTVMISGLAIHGRGKEALKVFSEMVEEGLAPDDVVYVGVLSACSHAGLVDEGLQCFKSMQFEHKIEPTVKHYGCMVDLLGRFGMLKEAYELVKSMSIKPNDVIWRSLLSACKVHHNLEIGEIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLVEAKRKVYKFVSQDKSMPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRFRFHHFKNGTCTCKDYWSASPQQGTVVSLGRRKFPDEANQMSPEVAVWGLAEAIKWIGELDFDKIFDSAGSLTNEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILLQFAKDNGLEDGVVTIEEIRFGTESQGTGLNVDTFFGIDELHSITKQTFKILKLFTNFTASEGHELVQ*