AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045558.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045558.01.T01 MTR_8g074050 87.500 80 10 0 93 172 88 167 1.81e-44 153
MsG0880045558.01.T01 MTR_8g074070 85.000 80 12 0 93 172 88 167 7.80e-44 151
MsG0880045558.01.T01 MTR_8g074070 85.000 80 12 0 93 172 88 167 1.74e-43 151
MsG0880045558.01.T01 MTR_3g117420 73.750 80 21 0 93 172 88 167 8.61e-34 125
MsG0880045558.01.T01 MTR_3g117485 64.634 82 26 2 93 172 15 95 3.62e-26 103
MsG0880045558.01.T01 MTR_3g117485 64.634 82 26 2 93 172 87 167 6.13e-26 104
MsG0880045558.01.T01 MTR_4g116010 57.143 77 33 0 95 171 84 160 1.12e-23 98.2
MsG0880045558.01.T01 MTR_1g082540 74.138 58 13 1 203 260 32 87 2.04e-23 91.3
MsG0880045558.01.T01 MTR_3g070020 71.429 56 16 0 205 260 97 152 5.97e-21 86.7
MsG0880045558.01.T01 MTR_7g045650 36.585 82 52 0 93 174 94 175 2.03e-16 77.8
MsG0880045558.01.T01 MTR_4g115990 45.882 85 30 1 89 173 73 141 2.18e-16 77.8
MsG0880045558.01.T01 MTR_3g117430 55.405 74 15 2 109 182 8 63 2.84e-16 73.6
MsG0880045558.01.T01 MTR_7g062550 37.805 82 51 0 93 174 94 175 5.21e-15 74.3
MsG0880045558.01.T01 MTR_7g063730 38.158 76 47 0 93 168 98 173 2.91e-14 72.0
MsG0880045558.01.T01 MTR_7g062580 36.585 82 52 0 93 174 89 170 3.75e-14 71.6
MsG0880045558.01.T01 MTR_7g062570 35.294 102 61 2 93 189 89 190 3.88e-14 71.6
MsG0880045558.01.T01 MTR_2g437380 39.189 74 45 0 100 173 1 74 6.32e-14 70.1
MsG0880045558.01.T01 MTR_7g062600 34.146 82 54 0 93 174 85 166 8.80e-14 70.5
MsG0880045558.01.T01 MTR_2g437380 38.667 75 46 0 99 173 94 168 1.11e-13 70.5
MsG0880045558.01.T01 MTR_3g026150 45.455 66 36 0 108 173 109 174 5.46e-13 67.8
MsG0880045558.01.T01 MTR_3g026150 45.455 66 36 0 108 173 6 71 7.75e-13 67.0
MsG0880045558.01.T01 MTR_3g026150 45.455 66 36 0 108 173 109 174 1.03e-12 67.4
MsG0880045558.01.T01 MTR_5g011250 35.802 81 50 1 93 171 85 165 4.53e-12 65.5
MsG0880045558.01.T01 MTR_3g070860 36.275 102 60 1 93 189 88 189 1.21e-11 64.3
MsG0880045558.01.T01 MTR_7g051110 70.270 37 11 0 217 253 143 179 2.44e-11 61.2
MsG0880045558.01.T01 MTR_5g059130 32.090 134 78 4 64 189 51 179 3.62e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045558.01.T01 AT1G49390 55.556 81 36 0 93 173 3 83 1.66e-27 107
MsG0880045558.01.T01 AT1G49390 55.556 81 36 0 93 173 82 162 3.74e-27 107
MsG0880045558.01.T01 AT5G20400 50.617 81 40 0 93 173 82 162 3.03e-25 102
MsG0880045558.01.T01 AT5G20550 50.617 81 40 0 93 173 82 162 5.66e-25 102
MsG0880045558.01.T01 AT5G54000 50.617 81 40 0 93 173 3 83 7.77e-25 100
MsG0880045558.01.T01 AT5G54000 50.617 81 40 0 93 173 83 163 1.84e-24 100
MsG0880045558.01.T01 AT3G21420 47.761 67 35 0 107 173 107 173 2.05e-15 75.5
MsG0880045558.01.T01 AT2G38240 37.143 105 57 1 93 188 81 185 1.95e-14 72.4
MsG0880045558.01.T01 AT1G17020 41.304 92 51 1 93 181 89 180 2.74e-14 72.0
MsG0880045558.01.T01 AT4G25300 39.506 81 49 0 93 173 88 168 5.82e-13 68.2
MsG0880045558.01.T01 AT1G17010 37.037 81 51 0 93 173 90 170 1.49e-11 63.9
MsG0880045558.01.T01 AT4G25310 39.189 74 45 0 100 173 92 165 1.95e-11 63.5
MsG0880045558.01.T01 AT4G25310 39.189 74 45 0 100 173 92 165 2.26e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTTCTTTGATCTTC+AGG 0.196872 8:+61032521 None:intergenic
TAGCTAGGGCGACATGCTTT+TGG 0.213640 8:-61031985 MsG0880045558.01.T01:CDS
CAAAACAATATTGAAGGATA+TGG 0.284911 8:-61032611 MsG0880045558.01.T01:CDS
TAGAAAATCAAATGCTTGAT+TGG 0.304305 8:-61032571 MsG0880045558.01.T01:CDS
ACTTCGAGGTGAAGCTTGTT+AGG 0.335684 8:-61032036 MsG0880045558.01.T01:CDS
ATCAAAGAAATTTCAAACTT+TGG 0.340082 8:-61032514 MsG0880045558.01.T01:CDS
AAGAATTTACCTGTAATCAA+TGG 0.388929 8:+61032481 None:intergenic
AACGAGCTTGTCATCGCATA+TGG 0.391851 8:+61032710 None:intergenic
ACATGGAAGGGAGATGGATC+TGG 0.404720 8:-61033308 MsG0880045558.01.T01:CDS
TAATGTTAAATTCTTGACTA+AGG 0.430153 8:+61035098 None:intergenic
ATCCTTCTTGTATTGAACAT+TGG 0.438724 8:-61031937 MsG0880045558.01.T01:CDS
AGAATTTACCTGTAATCAAT+GGG 0.439717 8:+61032482 None:intergenic
ATCATTACATTCCAACTTCG+AGG 0.456903 8:-61032050 MsG0880045558.01.T01:CDS
AATGAAAGCTCTATCGTCTC+CGG 0.469787 8:-61032125 MsG0880045558.01.T01:CDS
CTAGGAAACAGCAGGGGACA+TGG 0.478675 8:-61033325 MsG0880045558.01.T01:CDS
CCGGCAGTTGTAGTGGGACT+AGG 0.478696 8:-61033343 MsG0880045558.01.T01:CDS
AACAAGCTTCACCTCGAAGT+TGG 0.491989 8:+61032039 None:intergenic
TGGTTGCTCATACTTTAGCT+AGG 0.496724 8:-61032000 MsG0880045558.01.T01:CDS
AGGGAACAAAACAATATTGA+AGG 0.499241 8:-61032617 MsG0880045558.01.T01:CDS
TGATTTGAAGAAATCGAATC+CGG 0.501630 8:-61033362 MsG0880045558.01.T01:intron
CAGGGGACATGGAAGGGAGA+TGG 0.510489 8:-61033314 MsG0880045558.01.T01:CDS
ATCGAATCCGGCAGTTGTAG+TGG 0.522671 8:-61033350 MsG0880045558.01.T01:CDS
AAACAGCAGGGGACATGGAA+GGG 0.524308 8:-61033320 MsG0880045558.01.T01:CDS
CCTAGTCCCACTACAACTGC+CGG 0.528485 8:+61033343 None:intergenic
GCTCTATCGTCTCCGGGCCA+TGG 0.531069 8:-61032118 MsG0880045558.01.T01:CDS
GAAACAGCAGGGGACATGGA+AGG 0.531217 8:-61033321 MsG0880045558.01.T01:CDS
GGAAGGGAGATGGATCTGGA+TGG 0.531740 8:-61033304 MsG0880045558.01.T01:CDS
GAAAAGAATGACAGTGGTGG+TGG 0.533099 8:-61033278 MsG0880045558.01.T01:CDS
ATGAAAGCTCTATCGTCTCC+GGG 0.534994 8:-61032124 MsG0880045558.01.T01:CDS
AACTCTGAATCACCATGGCC+CGG 0.540705 8:+61032106 None:intergenic
GCTCGTTTCTTGACAAAGTG+AGG 0.541459 8:-61032694 MsG0880045558.01.T01:CDS
TAGTGGGACTAGGAAACAGC+AGG 0.541658 8:-61033333 MsG0880045558.01.T01:CDS
GGCGGTGGTTTGAAGAATGA+TGG 0.541959 8:-61033257 MsG0880045558.01.T01:CDS
AATGACAGTGGTGGTGGCGG+TGG 0.554200 8:-61033272 MsG0880045558.01.T01:CDS
TGTTAGGAAACAAGCGAACA+TGG 0.568849 8:-61032020 MsG0880045558.01.T01:CDS
AACCAATGTTCAATACAAGA+AGG 0.569117 8:+61031935 None:intergenic
CTCGTTTCTTGACAAAGTGA+GGG 0.576302 8:-61032693 MsG0880045558.01.T01:CDS
GGTTGCTCATACTTTAGCTA+GGG 0.578883 8:-61031999 MsG0880045558.01.T01:CDS
GAAGGGAGATGGATCTGGAT+GGG 0.582660 8:-61033303 MsG0880045558.01.T01:CDS
TCGAATCCGGCAGTTGTAGT+GGG 0.611623 8:-61033349 MsG0880045558.01.T01:CDS
AAGAATGACAGTGGTGGTGG+CGG 0.614821 8:-61033275 MsG0880045558.01.T01:CDS
GTTTGAAGAATGATGGTGAT+GGG 0.620460 8:-61033250 MsG0880045558.01.T01:CDS
TTACAGTTTCATAACAATCG+AGG 0.649887 8:-61035078 MsG0880045558.01.T01:intron
GGTTTGAAGAATGATGGTGA+TGG 0.671022 8:-61033251 MsG0880045558.01.T01:CDS
CATAAAACTCTGAATCACCA+TGG 0.684630 8:+61032101 None:intergenic
AGTGGGACTAGGAAACAGCA+GGG 0.711214 8:-61033332 MsG0880045558.01.T01:CDS
TGGGAAGAAAAGAATGACAG+TGG 0.733804 8:-61033284 MsG0880045558.01.T01:CDS
GAAGAAAAGAATGACAGTGG+TGG 0.760855 8:-61033281 MsG0880045558.01.T01:CDS
GTGGGACTAGGAAACAGCAG+GGG 0.761603 8:-61033331 MsG0880045558.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTTTATAAGTTTAAAA+AGG - Chr8:61034868-61034887 MsG0880045558.01.T01:intron 10.0%
!! TTTGTTTATAAGTTTAAAAA+GGG - Chr8:61034869-61034888 MsG0880045558.01.T01:intron 10.0%
!!! AAAATTGTCATTTTTTTATT+AGG + Chr8:61033002-61033021 None:intergenic 10.0%
!!! AAATTGTCATTTTTTTATTA+GGG + Chr8:61033001-61033020 None:intergenic 10.0%
!!! AAATTGTCATTTTTTTTATT+AGG - Chr8:61034132-61034151 MsG0880045558.01.T01:intron 10.0%
!!! AATAAAAAAAATGACAATTT+TGG + Chr8:61034132-61034151 None:intergenic 10.0%
!!! AATTGTCATTTTTTTTATTA+GGG - Chr8:61034133-61034152 MsG0880045558.01.T01:intron 10.0%
!!! TAATAAAAAAATGACAATTT+TGG - Chr8:61033001-61033020 MsG0880045558.01.T01:intron 10.0%
!! ATTGATGTTGTTAAATTAAA+TGG + Chr8:61032760-61032779 None:intergenic 15.0%
!! ATTTGTTTAGAAGTTTAAAT+GGG - Chr8:61032486-61032505 MsG0880045558.01.T01:intron 15.0%
!!! AACCTTAAAAAAGTAATTTT+AGG - Chr8:61032572-61032591 MsG0880045558.01.T01:CDS 15.0%
!!! AATGACCTATATATTTTTTT+GGG + Chr8:61032218-61032237 None:intergenic 15.0%
!!! AATTGTCATTTTTTTATTAG+GGG + Chr8:61033000-61033019 None:intergenic 15.0%
!!! ACCTTAAAAAAGTAATTTTA+GGG - Chr8:61032573-61032592 MsG0880045558.01.T01:CDS 15.0%
!!! ATTGTCATTTTTTTTATTAG+GGG - Chr8:61034134-61034153 MsG0880045558.01.T01:intron 15.0%
!!! ATTTTCGAAGTTTTTTTTTT+TGG + Chr8:61034789-61034808 None:intergenic 15.0%
!!! CTTTAAAACTAATAAATTGA+TGG - Chr8:61034253-61034272 MsG0880045558.01.T01:intron 15.0%
!!! TTGGTTTTTTTTTTAAGTTA+GGG - Chr8:61032424-61032443 MsG0880045558.01.T01:intron 15.0%
!!! TTTGGTTTTTTTTTTAAGTT+AGG - Chr8:61032423-61032442 MsG0880045558.01.T01:intron 15.0%
!!! TTTTCGAAGTTTTTTTTTTT+GGG + Chr8:61034788-61034807 None:intergenic 15.0%
!!! TTTTTTAAGGTTTTTTTTGA+AGG + Chr8:61032564-61032583 None:intergenic 15.0%
!! ACTAACATTTAATAGTATTG+TGG - Chr8:61034599-61034618 MsG0880045558.01.T01:intron 20.0%
!! AGGAAAAACTTATCAAAATA+GGG - Chr8:61032703-61032722 MsG0880045558.01.T01:CDS 20.0%
!! AGGTAAGATCAATATAAAAT+AGG - Chr8:61031993-61032012 MsG0880045558.01.T01:CDS 20.0%
!! ATCAAAGAAATTTCAAACTT+TGG - Chr8:61034537-61034556 MsG0880045558.01.T01:intron 20.0%
!! CATTTGTTTAGAAGTTTAAA+TGG - Chr8:61032485-61032504 MsG0880045558.01.T01:intron 20.0%
!! GTAATAATCATGATTTAAGT+AGG - Chr8:61032075-61032094 MsG0880045558.01.T01:CDS 20.0%
!! TAATGTTAAATTCTTGACTA+AGG + Chr8:61031956-61031975 None:intergenic 20.0%
!! TAATTTAGTAATTACACACA+TGG + Chr8:61033099-61033118 None:intergenic 20.0%
!! TTAAATTAAATGGTTGTACA+GGG + Chr8:61032750-61032769 None:intergenic 20.0%
!! TTTGTTTAGAAGTTTAAATG+GGG - Chr8:61032487-61032506 MsG0880045558.01.T01:intron 20.0%
!!! AGTATTCTATAAAGTATTCA+TGG - Chr8:61032034-61032053 MsG0880045558.01.T01:CDS 20.0%
!!! ATGTATTTTTTGAAACTACT+GGG + Chr8:61032642-61032661 None:intergenic 20.0%
!!! ATTGTCATTTTTTTATTAGG+GGG + Chr8:61032999-61033018 None:intergenic 20.0%
!!! ATTGTTAATATTCTCTTTTG+AGG + Chr8:61032245-61032264 None:intergenic 20.0%
!!! CAATGACCTATATATTTTTT+TGG + Chr8:61032219-61032238 None:intergenic 20.0%
!!! TATGTATTTTTTGAAACTAC+TGG + Chr8:61032643-61032662 None:intergenic 20.0%
!!! TCCCTAAAATTACTTTTTTA+AGG + Chr8:61032577-61032596 None:intergenic 20.0%
!!! TTAGTTTTGATGATTTTTCT+GGG - Chr8:61033855-61033874 MsG0880045558.01.T01:intron 20.0%
!!! TTGTCATTTTTTTTATTAGG+GGG - Chr8:61034135-61034154 MsG0880045558.01.T01:intron 20.0%
!!! TTGTTAATATTCTCTTTTGA+GGG + Chr8:61032244-61032263 None:intergenic 20.0%
!!! TTTAGTTTTGATGATTTTTC+TGG - Chr8:61033854-61033873 MsG0880045558.01.T01:intron 20.0%
!!! TTTGTGTTTTTTCTAAGTTA+TGG - Chr8:61034715-61034734 MsG0880045558.01.T01:intron 20.0%
! AAGAAAAGCAAAAATATGCA+AGG - Chr8:61034414-61034433 MsG0880045558.01.T01:intron 25.0%
! AAGAATGTTGAATTGGATAT+AGG + Chr8:61033249-61033268 None:intergenic 25.0%
! AAGAATTTACCTGTAATCAA+TGG + Chr8:61034573-61034592 None:intergenic 25.0%
! AAGGATGAGAATCAAAAATA+CGG + Chr8:61035100-61035119 None:intergenic 25.0%
! AGAAAAGCAAAAATATGCAA+GGG - Chr8:61034415-61034434 MsG0880045558.01.T01:intron 25.0%
! AGAATTTACCTGTAATCAAT+GGG + Chr8:61034572-61034591 None:intergenic 25.0%
! ATAATTTAGATTCGGATTCT+AGG - Chr8:61032334-61032353 MsG0880045558.01.T01:intron 25.0%
! ATCAAAAGTCAATATTGCAA+GGG + Chr8:61033043-61033062 None:intergenic 25.0%
! CAAAACAATATTGAAGGATA+TGG - Chr8:61034440-61034459 MsG0880045558.01.T01:intron 25.0%
! CAATGTATTAAACAGAAGAT+TGG - Chr8:61032261-61032280 MsG0880045558.01.T01:intron 25.0%
! CTAGAATCAACACAAATTTA+GGG - Chr8:61034638-61034657 MsG0880045558.01.T01:intron 25.0%
! GAGGAAAAACTTATCAAAAT+AGG - Chr8:61032702-61032721 MsG0880045558.01.T01:CDS 25.0%
! GATAGAGGATAATTTAGATT+CGG - Chr8:61032326-61032345 MsG0880045558.01.T01:intron 25.0%
! GTTAAATTAAATGGTTGTAC+AGG + Chr8:61032751-61032770 None:intergenic 25.0%
! TAAGGAAAAGAATGTTGAAT+TGG + Chr8:61033256-61033275 None:intergenic 25.0%
! TAATTTAGATTCGGATTCTA+GGG - Chr8:61032335-61032354 MsG0880045558.01.T01:intron 25.0%
! TAATTTAGTAATTACACACG+TGG - Chr8:61034032-61034051 MsG0880045558.01.T01:intron 25.0%
! TAGAAAATCAAATGCTTGAT+TGG - Chr8:61034480-61034499 MsG0880045558.01.T01:intron 25.0%
! TCATGTAGATAAATTCTCTT+GGG - Chr8:61032828-61032847 MsG0880045558.01.T01:intron 25.0%
! TGAAGAAAAATTGCAAAGAT+TGG + Chr8:61033410-61033429 None:intergenic 25.0%
! TTCATGTAGATAAATTCTCT+TGG - Chr8:61032827-61032846 MsG0880045558.01.T01:intron 25.0%
! TTCCTCCCAAAAAAATATAT+AGG - Chr8:61032210-61032229 MsG0880045558.01.T01:intron 25.0%
! TTGAAATTTCTTTGATCTTC+AGG + Chr8:61034533-61034552 None:intergenic 25.0%
!! AGGAAAACTTTAAAAGAGAA+AGG - Chr8:61032927-61032946 MsG0880045558.01.T01:intron 25.0%
!! CTAATAGTATCATTTTCTCT+TGG + Chr8:61034209-61034228 None:intergenic 25.0%
!! TCTAGAATCAACACAAATTT+AGG - Chr8:61034637-61034656 MsG0880045558.01.T01:intron 25.0%
!!! GATTTTTCTGAAATCACTTT+CGG + Chr8:61032879-61032898 None:intergenic 25.0%
!!! TATTTTTGCTTTTCTTCCTT+TGG + Chr8:61034410-61034429 None:intergenic 25.0%
!!! TTTTGCTTGTTAACAATCTA+AGG - Chr8:61032177-61032196 MsG0880045558.01.T01:intron 25.0%
!!! TTTTTGGGCAAATAACTATT+TGG + Chr8:61034773-61034792 None:intergenic 25.0%
AAAAGGTCAATATTGCAAAG+GGG - Chr8:61034091-61034110 MsG0880045558.01.T01:intron 30.0%
AACCAATGTTCAATACAAGA+AGG + Chr8:61035119-61035138 None:intergenic 30.0%
AAGCTACTGTTACTGTTAAT+TGG + Chr8:61033215-61033234 None:intergenic 30.0%
AATATATAACCCTCCAACTA+TGG + Chr8:61034818-61034837 None:intergenic 30.0%
AGCTAATTGTGTGTATGTTA+AGG - Chr8:61032907-61032926 MsG0880045558.01.T01:intron 30.0%
AGGGAACAAAACAATATTGA+AGG - Chr8:61034434-61034453 MsG0880045558.01.T01:intron 30.0%
ATAGGGATTGAAATTGATAG+AGG - Chr8:61032311-61032330 MsG0880045558.01.T01:intron 30.0%
ATCCTTCTTGTATTGAACAT+TGG - Chr8:61035114-61035133 MsG0880045558.01.T01:CDS 30.0%
CAAAAGGTCAATATTGCAAA+GGG - Chr8:61034090-61034109 MsG0880045558.01.T01:intron 30.0%
GATCAAAAGTCAATATTGCA+AGG + Chr8:61033044-61033063 None:intergenic 30.0%
GATTATTACCAAGATTAACC+TGG + Chr8:61032064-61032083 None:intergenic 30.0%
GTATTAAACAGAAGATTGGA+TGG - Chr8:61032265-61032284 MsG0880045558.01.T01:intron 30.0%
TCAAAAGTCAATATTGCAAG+GGG + Chr8:61033042-61033061 None:intergenic 30.0%
TCTTTCATCAAATCAAAAGC+AGG - Chr8:61033315-61033334 MsG0880045558.01.T01:CDS 30.0%
TGATTTGAAGAAATCGAATC+CGG - Chr8:61033689-61033708 MsG0880045558.01.T01:intron 30.0%
TTACAGTTTCATAACAATCG+AGG - Chr8:61031973-61031992 MsG0880045558.01.T01:CDS 30.0%
TTTAAGTAGGTCTAAGTACT+AGG - Chr8:61032088-61032107 MsG0880045558.01.T01:CDS 30.0%
! AGAAAGGTTAACTACAGTTT+TGG - Chr8:61032943-61032962 MsG0880045558.01.T01:intron 30.0%
! CTTAATTCCTTCTTTGTTTC+CGG - Chr8:61033272-61033291 MsG0880045558.01.T01:CDS 30.0%
! GTTTGGTTCATTGATAATCA+AGG - Chr8:61033585-61033604 MsG0880045558.01.T01:intron 30.0%
! TCAACACAAATTTAGGGTTA+CGG - Chr8:61034644-61034663 MsG0880045558.01.T01:intron 30.0%
!! TTGGTCTCTAGAATTAGATT+TGG + Chr8:61034670-61034689 None:intergenic 30.0%
!!! GACCTATATATTTTTTTGGG+AGG + Chr8:61032215-61032234 None:intergenic 30.0%
!!! GCAATTTTTTGAACTTCCAA+AGG - Chr8:61034391-61034410 MsG0880045558.01.T01:intron 30.0%
!!! TATTTTTTGAAACTACTGGG+AGG + Chr8:61032639-61032658 None:intergenic 30.0%
AACGAATCGAATGAGTTGTT+GGG - Chr8:61033562-61033581 MsG0880045558.01.T01:intron 35.0%
AATCGCAACATTGACAACTT+AGG + Chr8:61032972-61032991 None:intergenic 35.0%
AATGGTTGTACAGGGTTAAT+TGG + Chr8:61032742-61032761 None:intergenic 35.0%
ATCAGGTTCGTAATTCTTCT+CGG + Chr8:61033465-61033484 None:intergenic 35.0%
ATCATTACATTCCAACTTCG+AGG - Chr8:61035001-61035020 MsG0880045558.01.T01:intron 35.0%
ATCGCAACATTGACAAACTT+AGG - Chr8:61034163-61034182 MsG0880045558.01.T01:intron 35.0%
ATCGCAACATTGACAACTTA+GGG + Chr8:61032971-61032990 None:intergenic 35.0%
ATGCTTAGAAATTCGTACAC+CGG + Chr8:61033294-61033313 None:intergenic 35.0%
CAAGGTAATTTGAACGAAGA+TGG - Chr8:61033603-61033622 MsG0880045558.01.T01:intron 35.0%
CATAAAACTCTGAATCACCA+TGG + Chr8:61034953-61034972 None:intergenic 35.0%
CCAAAAGGTCAATATTGCAA+AGG - Chr8:61034089-61034108 MsG0880045558.01.T01:intron 35.0%
CCAAAATTAGTTAGCCACTT+TGG + Chr8:61034689-61034708 None:intergenic 35.0%
CGGAAACAAAGAAGGAATTA+AGG + Chr8:61033274-61033293 None:intergenic 35.0%
CTCAGTCAAAATTGACCAAA+AGG - Chr8:61034074-61034093 MsG0880045558.01.T01:intron 35.0%
CTGAATAGCTGAAAACAGTT+GGG + Chr8:61034313-61034332 None:intergenic 35.0%
GCAAATAACTATTTGGTCTC+TGG + Chr8:61034766-61034785 None:intergenic 35.0%
GTGACATTTAACAAACCTCT+GGG + Chr8:61032613-61032632 None:intergenic 35.0%
TCAACTTTCATCTTCTTCAG+AGG - Chr8:61033339-61033358 MsG0880045558.01.T01:CDS 35.0%
TCGCAACATTGACAAACTTA+GGG - Chr8:61034164-61034183 MsG0880045558.01.T01:intron 35.0%
TGTGACATTTAACAAACCTC+TGG + Chr8:61032614-61032633 None:intergenic 35.0%
! AGTTGTCAATGTTGCGATTT+TGG - Chr8:61032973-61032992 MsG0880045558.01.T01:intron 35.0%
! CCAAAGTGGCTAACTAATTT+TGG - Chr8:61034686-61034705 MsG0880045558.01.T01:intron 35.0%
! CCTTTGCAATATTGACCTTT+TGG + Chr8:61034092-61034111 None:intergenic 35.0%
! GATGAATTCTGGATTTTGTG+GGG - Chr8:61033901-61033920 MsG0880045558.01.T01:intron 35.0%
! GCTTGTTAACAATCTAAGGT+AGG - Chr8:61032181-61032200 MsG0880045558.01.T01:intron 35.0%
! GGATGAATTCTGGATTTTGT+GGG - Chr8:61033900-61033919 MsG0880045558.01.T01:intron 35.0%
! GTTTGAAGAATGATGGTGAT+GGG - Chr8:61033801-61033820 MsG0880045558.01.T01:intron 35.0%
! GTTTGTCAATGTTGCGATTT+TGG + Chr8:61034161-61034180 None:intergenic 35.0%
! TAAAGTATTCATGGACTACC+AGG - Chr8:61032043-61032062 MsG0880045558.01.T01:CDS 35.0%
! TCTAATTCTAGAGACCAAAG+TGG - Chr8:61034672-61034691 MsG0880045558.01.T01:intron 35.0%
! TGGATGAATTCTGGATTTTG+TGG - Chr8:61033899-61033918 MsG0880045558.01.T01:intron 35.0%
! TGGTTAACATGGTTAAGTTG+AGG + Chr8:61032672-61032691 None:intergenic 35.0%
! TGTTTCTATCGTTTAGTCCT+TGG - Chr8:61032380-61032399 MsG0880045558.01.T01:intron 35.0%
! TTCTGGGTGGATGAATTTTT+GGG - Chr8:61033871-61033890 MsG0880045558.01.T01:intron 35.0%
! TTTCTGGGTGGATGAATTTT+TGG - Chr8:61033870-61033889 MsG0880045558.01.T01:intron 35.0%
!! AATGATGGTGATGGGAAAAA+CGG - Chr8:61033809-61033828 MsG0880045558.01.T01:intron 35.0%
!! ACCTGTAATCAATGGGTTTT+TGG + Chr8:61034565-61034584 None:intergenic 35.0%
!! CCTGTAATCAATGGGTTTTT+GGG + Chr8:61034564-61034583 None:intergenic 35.0%
!! CTGTAATCAATGGGTTTTTG+GGG + Chr8:61034563-61034582 None:intergenic 35.0%
!! GGTTAACATGGTTAAGTTGA+GGG + Chr8:61032671-61032690 None:intergenic 35.0%
!! GTTAACATGGTTAAGTTGAG+GGG + Chr8:61032670-61032689 None:intergenic 35.0%
!! GTTTTGATGATTTTTCTGGG+TGG - Chr8:61033858-61033877 MsG0880045558.01.T01:intron 35.0%
!!! GGATGAATTTTTGGGTTTTG+TGG - Chr8:61033879-61033898 MsG0880045558.01.T01:intron 35.0%
!!! TGGCTAACTAATTTTGGAGT+CGG - Chr8:61034692-61034711 MsG0880045558.01.T01:intron 35.0%
AAATCCACTACCATAGTTGG+AGG - Chr8:61034805-61034824 MsG0880045558.01.T01:intron 40.0%
AAGATGGTCGACGATTTCTT+CGG - Chr8:61033619-61033638 MsG0880045558.01.T01:intron 40.0%
AAGCTCGTCACATTGAAAAG+AGG + Chr8:61033387-61033406 None:intergenic 40.0%
AATCCACTACCATAGTTGGA+GGG - Chr8:61034806-61034825 MsG0880045558.01.T01:intron 40.0%
AATGAAAGCTCTATCGTCTC+CGG - Chr8:61034926-61034945 MsG0880045558.01.T01:intron 40.0%
ACATTTAACAAACCTCTGGG+AGG + Chr8:61032610-61032629 None:intergenic 40.0%
ACCTGCAAATTCACGCTTAA+CGG + Chr8:61033666-61033685 None:intergenic 40.0%
ACGAATCGAATGAGTTGTTG+GGG - Chr8:61033563-61033582 MsG0880045558.01.T01:intron 40.0%
ACTCCAAAATCAGTTAGCCA+AGG + Chr8:61032400-61032419 None:intergenic 40.0%
AGAATTACGAACCTGATCGT+CGG - Chr8:61033468-61033487 MsG0880045558.01.T01:intron 40.0%
AGGTCTAAGTACTAGGACTT+GGG - Chr8:61032095-61032114 MsG0880045558.01.T01:CDS 40.0%
ATTGCAAGGGGCTAAATCTT+AGG + Chr8:61033030-61033049 None:intergenic 40.0%
CACTCAACAGATGGTTAACA+TGG + Chr8:61032683-61032702 None:intergenic 40.0%
CCTGAATAGCTGAAAACAGT+TGG + Chr8:61034314-61034333 None:intergenic 40.0%
CGAAAATCCACTACCATAGT+TGG - Chr8:61034802-61034821 MsG0880045558.01.T01:intron 40.0%
CGCAACATTGACAAACTTAG+GGG - Chr8:61034165-61034184 MsG0880045558.01.T01:intron 40.0%
CTCGTTTCTTGACAAAGTGA+GGG - Chr8:61034358-61034377 MsG0880045558.01.T01:intron 40.0%
GAACGAATCGAATGAGTTGT+TGG - Chr8:61033561-61033580 MsG0880045558.01.T01:intron 40.0%
GAAGAAAAGAATGACAGTGG+TGG - Chr8:61033770-61033789 MsG0880045558.01.T01:intron 40.0%
GATTGGATGGAATCAAGAGA+AGG - Chr8:61032278-61032297 MsG0880045558.01.T01:intron 40.0%
GCAACATTGACAAACTTAGG+GGG - Chr8:61034166-61034185 MsG0880045558.01.T01:intron 40.0%
GGTTGCTCATACTTTAGCTA+GGG - Chr8:61035052-61035071 MsG0880045558.01.T01:intron 40.0%
TAGGTCTAAGTACTAGGACT+TGG - Chr8:61032094-61032113 MsG0880045558.01.T01:CDS 40.0%
TCGCAACATTGACAACTTAG+GGG + Chr8:61032970-61032989 None:intergenic 40.0%
TGAAAAGAGGATGAACACGA+GGG + Chr8:61033374-61033393 None:intergenic 40.0%
TGCAAAGGGGCTAAATCTTA+GGG - Chr8:61034104-61034123 MsG0880045558.01.T01:intron 40.0%
TGGGAAGAAAAGAATGACAG+TGG - Chr8:61033767-61033786 MsG0880045558.01.T01:intron 40.0%
TGGTTGCTCATACTTTAGCT+AGG - Chr8:61035051-61035070 MsG0880045558.01.T01:intron 40.0%
TGTTAACCATCTGTTGAGTG+AGG - Chr8:61032683-61032702 MsG0880045558.01.T01:CDS 40.0%
TGTTAGGAAACAAGCGAACA+TGG - Chr8:61035031-61035050 MsG0880045558.01.T01:intron 40.0%
TTGAAAAGAGGATGAACACG+AGG + Chr8:61033375-61033394 None:intergenic 40.0%
TTGCAAAGGGGCTAAATCTT+AGG - Chr8:61034103-61034122 MsG0880045558.01.T01:intron 40.0%
TTGCAAGGGGCTAAATCTTA+GGG + Chr8:61033029-61033048 None:intergenic 40.0%
! AATTCTGGATTTTGTGGGGT+TGG - Chr8:61033905-61033924 MsG0880045558.01.T01:intron 40.0%
! ATCGATACAAGCAGTTTTGC+TGG - Chr8:61032795-61032814 MsG0880045558.01.T01:intron 40.0%
! ATGGACTACCAGGTTAATCT+TGG - Chr8:61032053-61032072 MsG0880045558.01.T01:CDS 40.0%
! CCAACTGTTTTCAGCTATTC+AGG - Chr8:61034311-61034330 MsG0880045558.01.T01:intron 40.0%
! CCCAAAAACCCATTGATTAC+AGG - Chr8:61034561-61034580 MsG0880045558.01.T01:intron 40.0%
! GGTTTGAAGAATGATGGTGA+TGG - Chr8:61033800-61033819 MsG0880045558.01.T01:intron 40.0%
! GTTTTTCCTCACTCAACAGA+TGG + Chr8:61032692-61032711 None:intergenic 40.0%
! TCGATACAAGCAGTTTTGCT+GGG - Chr8:61032796-61032815 MsG0880045558.01.T01:intron 40.0%
!! AGTCCTTGGCTAACTGATTT+TGG - Chr8:61032394-61032413 MsG0880045558.01.T01:intron 40.0%
!! ATGATGGTGATGGGAAAAAC+GGG - Chr8:61033810-61033829 MsG0880045558.01.T01:intron 40.0%
!! TGGGTTTTGTGGATGAATTC+TGG - Chr8:61033890-61033909 MsG0880045558.01.T01:intron 40.0%
!!! AACTGATTTTGGAGTCGGTT+TGG - Chr8:61032405-61032424 MsG0880045558.01.T01:intron 40.0%
!!! TGGCTAACTGATTTTGGAGT+CGG - Chr8:61032400-61032419 MsG0880045558.01.T01:intron 40.0%
AACAAGCTTCACCTCGAAGT+TGG + Chr8:61035015-61035034 None:intergenic 45.0%
AACGAGCTTGTCATCGCATA+TGG + Chr8:61034344-61034363 None:intergenic 45.0%
ACGCTCTTCAATCTTCCACA+CGG + Chr8:61033538-61033557 None:intergenic 45.0%
AGAGAAGGAAGGAGAGGAAT+AGG - Chr8:61032293-61032312 MsG0880045558.01.T01:intron 45.0%
ATGAAAGCTCTATCGTCTCC+GGG - Chr8:61034927-61034946 MsG0880045558.01.T01:intron 45.0%
CGCAACATTGACAACTTAGG+GGG + Chr8:61032969-61032988 None:intergenic 45.0%
GAAAAGAATGACAGTGGTGG+TGG - Chr8:61033773-61033792 MsG0880045558.01.T01:intron 45.0%
GAATCAAGAGAAGGAAGGAG+AGG - Chr8:61032287-61032306 MsG0880045558.01.T01:intron 45.0%
GAGAAGGAAGGAGAGGAATA+GGG - Chr8:61032294-61032313 MsG0880045558.01.T01:intron 45.0%
GCAAAGGGGCTAAATCTTAG+GGG - Chr8:61034105-61034124 MsG0880045558.01.T01:intron 45.0%
GCTCGTTTCTTGACAAAGTG+AGG - Chr8:61034357-61034376 MsG0880045558.01.T01:intron 45.0%
GGATGGAATCAAGAGAAGGA+AGG - Chr8:61032282-61032301 MsG0880045558.01.T01:intron 45.0%
GGTCTAAGTACTAGGACTTG+GGG - Chr8:61032096-61032115 MsG0880045558.01.T01:CDS 45.0%
GTCTAAGTACTAGGACTTGG+GGG - Chr8:61032097-61032116 MsG0880045558.01.T01:CDS 45.0%
GTTAGGATTAGGTTTCCGTG+TGG - Chr8:61033520-61033539 MsG0880045558.01.T01:intron 45.0%
TAACCCTCCAACTATGGTAG+TGG + Chr8:61034812-61034831 None:intergenic 45.0%
TCGAATGAGTTGTTGGGGTT+TGG - Chr8:61033568-61033587 MsG0880045558.01.T01:intron 45.0%
TCGTACACCGGAAACAAAGA+AGG + Chr8:61033282-61033301 None:intergenic 45.0%
TGCAAGGGGCTAAATCTTAG+GGG + Chr8:61033028-61033047 None:intergenic 45.0%
TTCTTCTCGGAAGAGACGTA+AGG + Chr8:61033452-61033471 None:intergenic 45.0%
! ACTTCGAGGTGAAGCTTGTT+AGG - Chr8:61035015-61035034 MsG0880045558.01.T01:intron 45.0%
! CGATACAAGCAGTTTTGCTG+GGG - Chr8:61032797-61032816 MsG0880045558.01.T01:intron 45.0%
! TTAACAAACCTCTGGGAGGT+CGG + Chr8:61032606-61032625 None:intergenic 45.0%
!! TAAATTAAAAAAAATAGAAA+AGG - Chr8:61033159-61033178 MsG0880045558.01.T01:intron 5.0%
!! TGAAATAAAAAAATAAAAAA+AGG + Chr8:61033956-61033975 None:intergenic 5.0%
AAACAGCAGGGGACATGGAA+GGG - Chr8:61033731-61033750 MsG0880045558.01.T01:intron 50.0%
AACTCTGAATCACCATGGCC+CGG + Chr8:61034948-61034967 None:intergenic 50.0%
ACATGGAAGGGAGATGGATC+TGG - Chr8:61033743-61033762 MsG0880045558.01.T01:intron 50.0%
ACGCTTAACGGCAACAAGCA+AGG + Chr8:61033654-61033673 None:intergenic 50.0%
AGGGACAAAGTTTCACAGCG+AGG - Chr8:61032443-61032462 MsG0880045558.01.T01:intron 50.0%
AGTGGGACTAGGAAACAGCA+GGG - Chr8:61033719-61033738 MsG0880045558.01.T01:intron 50.0%
ATCGAATCCGGCAGTTGTAG+TGG - Chr8:61033701-61033720 MsG0880045558.01.T01:intron 50.0%
ATGGTCGACGATTTCTTCGG+CGG - Chr8:61033622-61033641 MsG0880045558.01.T01:intron 50.0%
CCACGACGGTTGTTAGGATT+AGG - Chr8:61033509-61033528 MsG0880045558.01.T01:intron 50.0%
CCTAATCCTAACAACCGTCG+TGG + Chr8:61033512-61033531 None:intergenic 50.0%
CTAACAACCGTCGTGGATGA+CGG + Chr8:61033505-61033524 None:intergenic 50.0%
GAAGGGAGATGGATCTGGAT+GGG - Chr8:61033748-61033767 MsG0880045558.01.T01:intron 50.0%
GCCGTTAAGCGTGAATTTGC+AGG - Chr8:61033662-61033681 MsG0880045558.01.T01:intron 50.0%
GGCGGTGGTTTGAAGAATGA+TGG - Chr8:61033794-61033813 MsG0880045558.01.T01:intron 50.0%
TAGTGGGACTAGGAAACAGC+AGG - Chr8:61033718-61033737 MsG0880045558.01.T01:intron 50.0%
TCGAATCCGGCAGTTGTAGT+GGG - Chr8:61033702-61033721 MsG0880045558.01.T01:intron 50.0%
TGACCAAGTCAACGCCTAAG+TGG - Chr8:61033069-61033088 MsG0880045558.01.T01:intron 50.0%
TGACTGAGTCAACGCCTAAG+TGG + Chr8:61034062-61034081 None:intergenic 50.0%
! ACACACATGGCATGCCACTT+AGG + Chr8:61033086-61033105 None:intergenic 50.0%
! AGCTAGGGCGACATGCTTTT+GGG - Chr8:61035067-61035086 MsG0880045558.01.T01:intron 50.0%
! TAACAAACCTCTGGGAGGTC+GGG + Chr8:61032605-61032624 None:intergenic 50.0%
! TAGCTAGGGCGACATGCTTT+TGG - Chr8:61035066-61035085 MsG0880045558.01.T01:intron 50.0%
!! AAGAATGACAGTGGTGGTGG+CGG - Chr8:61033776-61033795 MsG0880045558.01.T01:intron 50.0%
!! ATGCCACTTAGGCGTTGACT+TGG + Chr8:61034075-61034056 None:intergenic 50.0%
ACGAACCTGATCGTCGGAGT+CGG - Chr8:61033474-61033493 MsG0880045558.01.T01:intron 55.0%
CCTAGTCCCACTACAACTGC+CGG + Chr8:61033711-61033730 None:intergenic 55.0%
CGTCATCCACGACGGTTGTT+AGG - Chr8:61033503-61033522 MsG0880045558.01.T01:intron 55.0%
CTAGGAAACAGCAGGGGACA+TGG - Chr8:61033726-61033745 MsG0880045558.01.T01:intron 55.0%
CTTGGGAGAGTCGCTCACTT+GGG - Chr8:61032845-61032864 MsG0880045558.01.T01:intron 55.0%
GAAAATACCCGACCTCCCAG+AGG - Chr8:61032595-61032614 MsG0880045558.01.T01:CDS 55.0%
GAAACAGCAGGGGACATGGA+AGG - Chr8:61033730-61033749 MsG0880045558.01.T01:intron 55.0%
GGAAGGGAGATGGATCTGGA+TGG - Chr8:61033747-61033766 MsG0880045558.01.T01:intron 55.0%
GTGGGACTAGGAAACAGCAG+GGG - Chr8:61033720-61033739 MsG0880045558.01.T01:intron 55.0%
TCTTGGGAGAGTCGCTCACT+TGG - Chr8:61032844-61032863 MsG0880045558.01.T01:intron 55.0%
TTGGTCTCTGGATGTGCGCA+TGG + Chr8:61034754-61034773 None:intergenic 55.0%
! ACACACGTGGCATGCCACTT+AGG - Chr8:61034045-61034064 MsG0880045558.01.T01:intron 55.0%
CAGGGGACATGGAAGGGAGA+TGG - Chr8:61033737-61033756 MsG0880045558.01.T01:intron 60.0%
CGATTCCGACTCCGACGATC+AGG + Chr8:61033482-61033501 None:intergenic 60.0%
GGAATCGCCGTCATCCACGA+CGG - Chr8:61033495-61033514 MsG0880045558.01.T01:intron 60.0%
! CCGGCAGTTGTAGTGGGACT+AGG - Chr8:61033708-61033727 MsG0880045558.01.T01:intron 60.0%
!! AATGACAGTGGTGGTGGCGG+TGG - Chr8:61033779-61033798 MsG0880045558.01.T01:intron 60.0%
GCTCTATCGTCTCCGGGCCA+TGG - Chr8:61034933-61034952 MsG0880045558.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 61031916 61035157 61031916 ID=MsG0880045558.01;Name=MsG0880045558.01
Chr8 mRNA 61031916 61035157 61031916 ID=MsG0880045558.01.T01;Parent=MsG0880045558.01;Name=MsG0880045558.01.T01;_AED=0.50;_eAED=0.67;_QI=0|0|0|1|1|1|4|0|260
Chr8 exon 61035079 61035157 61035079 ID=MsG0880045558.01.T01:exon:23392;Parent=MsG0880045558.01.T01
Chr8 exon 61033197 61033374 61033197 ID=MsG0880045558.01.T01:exon:23391;Parent=MsG0880045558.01.T01
Chr8 exon 61032491 61032748 61032491 ID=MsG0880045558.01.T01:exon:23390;Parent=MsG0880045558.01.T01
Chr8 exon 61031916 61032183 61031916 ID=MsG0880045558.01.T01:exon:23389;Parent=MsG0880045558.01.T01
Chr8 CDS 61035079 61035157 61035079 ID=MsG0880045558.01.T01:cds;Parent=MsG0880045558.01.T01
Chr8 CDS 61033197 61033374 61033197 ID=MsG0880045558.01.T01:cds;Parent=MsG0880045558.01.T01
Chr8 CDS 61032491 61032748 61032491 ID=MsG0880045558.01.T01:cds;Parent=MsG0880045558.01.T01
Chr8 CDS 61031916 61032183 61031916 ID=MsG0880045558.01.T01:cds;Parent=MsG0880045558.01.T01
Gene Sequence

>MsG0880045558.01.T01

ATGAATTTCAAGTTATCTCACTATTATTATATCAATTCCTTAGTCAAGAATTTAACATTACAGTTTCATAACAATCGAGAAATCGAATCCGGCAGTTGTAGTGGGACTAGGAAACAGCAGGGGACATGGAAGGGAGATGGATCTGGATGGGAAGAAAAGAATGACAGTGGTGGTGGCGGTGGTTTGAAGAATGATGGTGATGGGAAAAACGGGAGAAGAATTTTGAAAAGAAATTTTAGTTTTGATGATTTTTCTGGCTATTCAGGTGATAAACCATATGCGATGACAAGCTCGTTTCTTGACAAAGTGAGGGAAGTTTCAAAGCAATTTTTTGAACTTCCAAAGGAAGAAAAGCAAAAATATGCAAGGGAACAAAACAATATTGAAGGATATGGAAATGATACAATATATTTAGAAAATCAAATGCTTGATTGGTGTGACAGAATATTTTTGAATGTACATCCTGAAGATCAAAGAAATTTCAAACTTTGGCCCCAAAAACCCATTGATTACAGGGAATTTTATTTATCAGAGTCTGACTCAGATACTCTAATGAAAGCTCTATCGTCTCCGGGCCATGGTGATTCAGAGTTTTATGCTATTGTTTCTAGTATTATTTATCAGTTATCATTACATTCCAACTTCGAGGTGAAGCTTGTTAGGAAACAAGCGAACATGGTTGCTCATACTTTAGCTAGGGCGACATGCTTTTGGGCTAGTCACCGTATTTTTGATTCTCATCCTTCTTGTATTGAACATTGGTTGATTAATGATAATAATTAA

Protein sequence

>MsG0880045558.01.T01

MNFKLSHYYYINSLVKNLTLQFHNNREIESGSCSGTRKQQGTWKGDGSGWEEKNDSGGGGGLKNDGDGKNGRRILKRNFSFDDFSGYSGDKPYAMTSSFLDKVREVSKQFFELPKEEKQKYAREQNNIEGYGNDTIYLENQMLDWCDRIFLNVHPEDQRNFKLWPQKPIDYREFYLSESDSDTLMKALSSPGHGDSEFYAIVSSIIYQLSLHSNFEVKLVRKQANMVAHTLARATCFWASHRIFDSHPSCIEHWLINDNN*