AlfalfaGEDB | MsG0680035664.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035664.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035664.01.T01	XP_024642050.1	95.755	424	18	0	28	451	28	451	0	842

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035664.01.T01	I3T6N1	95.755	424	18	0	28	451	28	451	0.0	842

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0680035664.01	0.806426	8.272588e-50	4.488783e-47
MsG0080047884.01	MsG0680035664.01	0.834355	3.144498e-56	3.722520e-53
MsG0080048068.01	MsG0680035664.01	0.804490	2.107022e-49	1.087801e-46
MsG0080048085.01	MsG0680035664.01	0.832171	1.100775e-55	1.220589e-52
MsG0080048191.01	MsG0680035664.01	0.819020	1.446256e-52	1.100214e-49
MsG0080048198.01	MsG0680035664.01	0.833195	6.129501e-56	7.008054e-53
MsG0080048273.01	MsG0680035664.01	0.847492	1.117312e-59	1.989419e-56
MsG0080048274.01	MsG0680035664.01	0.806643	7.445547e-50	4.062226e-47
MsG0080048528.01	MsG0680035664.01	0.852730	3.809634e-61	8.036146e-58
MsG0080048727.01	MsG0680035664.01	0.831883	1.296770e-55	1.426115e-52

Showing 1 to 10 of 840 entries

Previous1 2 3 4 5…84Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035664.01.T01	MTR_6g088460	95.735	422	18	0	28	449	28	449	0.0	838

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035664.01.T01	AT5G19540	67.654	405	127	3	51	451	54	458	0.0	573
MsG0680035664.01.T01	AT5G19540	67.654	405	127	3	51	451	54	458	0.0	573

Showing 1 to 2 of 2 entries

Previous1Next

Find 113 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCAACAAGCGGCAT+AGG	0.495123	6:+110339603	None:intergenic
AAACGCTTCCGATGAGAAAA+AGG	0.312911	6:+110339586	None:intergenic
AAAGGCTTCAAAAGAGACCA+AGG	0.623114	6:+110342632	None:intergenic
AAAGGGATTGATGGTTCTAC+TGG	0.424242	6:-110342695	MsG0680035664.01.T01:CDS
AACACAAAACCTGGAGTAAT+TGG	0.285630	6:+110339867	None:intergenic
AACATACCGAAGAATTTCTG+TGG	0.646117	6:+110338496	None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG	0.417455	6:+110342856	None:intergenic
AAGACAGTGGCCAGGGCTTC+AGG	0.273860	6:-110338638	MsG0680035664.01.T01:CDS
AAGATTGCCATACTTTATGG+GGG	0.660170	6:-110338788	MsG0680035664.01.T01:CDS
AAGTCCAGCATCAGAATATC+CGG	0.478469	6:-110339550	MsG0680035664.01.T01:CDS

Showing 1 to 10 of 113 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAGCAACACAAAACC+TGG	+	Chr6:110341342-110341361	None:intergenic	30.0%
AAGAAAAGAAGGAAAAGCTT+TGG	+	Chr6:110338344-110338363	None:intergenic	30.0%
AAGTGAGACTTAAATGTCAA+AGG	-	Chr6:110340866-110340885	MsG0680035664.01.T01:intron	30.0%
ACATTTAAGTCTCACTTCTT+AGG	+	Chr6:110340863-110340882	None:intergenic	30.0%
AGACAATACATACTCTTCAT+CGG	+	Chr6:110339324-110339343	None:intergenic	30.0%
AGTGAGACTTAAATGTCAAA+GGG	-	Chr6:110340867-110340886	MsG0680035664.01.T01:intron	30.0%
ATCCAACAAAAGAAATGGAT+AGG	+	Chr6:110339869-110339888	None:intergenic	30.0%
ATGTTACCACAGAAATTCTT+CGG	-	Chr6:110342695-110342714	MsG0680035664.01.T01:CDS	30.0%
ATTTCATGAGGTTCAAGAAA+GGG	-	Chr6:110338485-110338504	MsG0680035664.01.T01:exon	30.0%
CATTGAGAATAATGACTTCT+CGG	-	Chr6:110340693-110340712	MsG0680035664.01.T01:intron	30.0%

Showing 1 to 10 of 315 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	110338186	110343033	110338186	ID=MsG0680035664.01;Name=MsG0680035664.01
Chr6	mRNA	110338186	110343033	110338186	ID=MsG0680035664.01.T01;Parent=MsG0680035664.01;Name=MsG0680035664.01.T01;_AED=0.45;_eAED=0.45;_QI=76\|1\|1\|1\|1\|1\|5\|301\|451
Chr6	exon	110338186	110338916	110338186	ID=MsG0680035664.01.T01:exon:8845;Parent=MsG0680035664.01.T01
Chr6	exon	110339477	110339760	110339477	ID=MsG0680035664.01.T01:exon:8844;Parent=MsG0680035664.01.T01
Chr6	exon	110339877	110340147	110339877	ID=MsG0680035664.01.T01:exon:8843;Parent=MsG0680035664.01.T01
Chr6	exon	110342482	110342519	110342482	ID=MsG0680035664.01.T01:exon:8842;Parent=MsG0680035664.01.T01
Chr6	exon	110342625	110343033	110342625	ID=MsG0680035664.01.T01:exon:8841;Parent=MsG0680035664.01.T01
Chr6	five_prime_UTR	110342958	110343033	110342958	ID=MsG0680035664.01.T01:five_prime_utr;Parent=MsG0680035664.01.T01
Chr6	CDS	110342625	110342957	110342625	ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6	CDS	110342482	110342519	110342482	ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6	CDS	110339877	110340147	110339877	ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6	CDS	110339477	110339760	110339477	ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6	CDS	110338487	110338916	110338487	ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6	three_prime_UTR	110338186	110338486	110338186	ID=MsG0680035664.01.T01:three_prime_utr;Parent=MsG0680035664.01.T01

Gene Sequence

>MsG0680035664.01.T01

ATGGTGTTAACTTCAATTTCATCAATATCTTCACCTTCATCATCATCATCTTCATTCTTCTCTGATTCACCATCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGTTTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCGACTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAGACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTTTTCAGGTTGATTTGATTTCAACAATTCATATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGCTTATTTTCTTTTGCAAAAGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCGATTCCGGAAGATCTTGATCCATGGAGATCCAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCGGAAATAGAGGCGTTGTCAAGGCTTGATGTAAGTGCTGCTATGAAGGTCTTCCTTGCAAAGAGACTAACATCCGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATCGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAAAAGAGCAATGGACAAGGGACAAAATAAGATTGCCATACTTTATGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCCAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>MsG0680035664.01.T01

MVLTSISSISSPSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSTQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFFQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLKRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*