AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035664.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035664.01.T01 MTR_6g088460 95.735 422 18 0 28 449 28 449 0.0 838
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035664.01.T01 AT5G19540 67.654 405 127 3 51 451 54 458 0.0 573
MsG0680035664.01.T01 AT5G19540 67.654 405 127 3 51 451 54 458 0.0 573

Find 113 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGATTGCCATACTTTA+TGG 0.078842 6:-110338791 MsG0680035664.01.T01:CDS
CTTGACAACGCCTCTATTTC+CGG 0.201374 6:+110339531 None:intergenic
TGGCGGTGGATCTGTGGTTT+TGG 0.230954 6:-110338562 MsG0680035664.01.T01:CDS
TCATCGACTCAACAAGAAAA+TGG 0.230955 6:-110342773 MsG0680035664.01.T01:CDS
GGTAATTGAGACAATCTAAT+TGG 0.268697 6:+110339933 None:intergenic
AAGACAGTGGCCAGGGCTTC+AGG 0.273860 6:-110338638 MsG0680035664.01.T01:CDS
AACACAAAACCTGGAGTAAT+TGG 0.285630 6:+110339867 None:intergenic
CGTAGGACTCAAGCTCCTTC+TGG 0.285730 6:+110340110 None:intergenic
TCAATTACCAGTCTGAAAAT+TGG 0.290529 6:-110339919 MsG0680035664.01.T01:CDS
GAATTTGAAAAGGGTGGTTT+TGG 0.293134 6:+110342824 None:intergenic
AATTATTACCATATGATTTA+CGG 0.294473 6:-110338205 MsG0680035664.01.T01:three_prime_UTR
ACCTCTTTGGGGCATGGAAA+TGG 0.304134 6:-110338314 MsG0680035664.01.T01:three_prime_UTR
GAATTTGAGCCATCTGTCTT+TGG 0.312878 6:+110339969 None:intergenic
AAACGCTTCCGATGAGAAAA+AGG 0.312911 6:+110339586 None:intergenic
TCTTCGGTACCACGGTGAAT+TGG 0.317020 6:-110338532 MsG0680035664.01.T01:CDS
GCTCTTAAAACTTTGAGAAA+TGG 0.323854 6:+110338338 None:intergenic
ATAAGATTGCCATACTTTAT+GGG 0.348638 6:-110338790 MsG0680035664.01.T01:CDS
TTAAAAGATGATATGATCAT+TGG 0.353086 6:-110338468 MsG0680035664.01.T01:exon
CTCCATGGATCAAGATCTTC+CGG 0.359668 6:+110339657 None:intergenic
CTCTTAAAACTTTGAGAAAT+GGG 0.360056 6:+110338339 None:intergenic
CGATTGTGTCCTTTATGAAA+TGG 0.381202 6:-110340089 MsG0680035664.01.T01:CDS
CTTCGGTACCACGGTGAATT+GGG 0.392853 6:-110338531 MsG0680035664.01.T01:CDS
CTCAATCTCCTTCCGAGATC+CGG 0.412651 6:+110338755 None:intergenic
CCTCTTTGGGGCATGGAAAT+GGG 0.413369 6:-110338313 MsG0680035664.01.T01:three_prime_UTR
GTACTTCCTATGCCGCTTGT+TGG 0.414173 6:-110339609 MsG0680035664.01.T01:CDS
ATGCATGTAATCATAAGAAA+TGG 0.414753 6:-110338287 MsG0680035664.01.T01:three_prime_UTR
TGCTAGCTACCATTTCATAA+AGG 0.415690 6:+110340080 None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG 0.417455 6:+110342856 None:intergenic
AATGTTGCAGCCTTCGATTC+CGG 0.423808 6:-110339676 MsG0680035664.01.T01:CDS
AAAGGGATTGATGGTTCTAC+TGG 0.424242 6:-110342695 MsG0680035664.01.T01:CDS
GGAAAAGCTTTGGAAGTTGA+TGG 0.433291 6:+110342866 None:intergenic
GATATAAGAAGAAGTTTCCT+TGG 0.434374 6:-110342649 MsG0680035664.01.T01:CDS
TTGCTTTGTAGAAACTGTTC+TGG 0.435673 6:+110342746 None:intergenic
CGTTTCTGAAGACAGTGGCC+AGG 0.441159 6:-110338646 MsG0680035664.01.T01:CDS
GTGTTGTACTATGATGTTGT+TGG 0.444714 6:+110342962 None:intergenic
AGGTTCAAGAAAGGGATTGA+TGG 0.445776 6:-110342704 MsG0680035664.01.T01:CDS
GAGGAGAAATCTGTTATAAT+CGG 0.448667 6:-110338869 MsG0680035664.01.T01:CDS
GGTGGCCACATGCCGGATCT+CGG 0.452902 6:-110338767 MsG0680035664.01.T01:CDS
GGAAAACCAACAAGAAAAGA+AGG 0.456001 6:+110342845 None:intergenic
GACAGATGGCTCAAATTCTC+AGG 0.469611 6:-110339964 MsG0680035664.01.T01:CDS
ATGTTACCACAGAAATTCTT+CGG 0.470066 6:-110338502 MsG0680035664.01.T01:CDS
CTTGTGAACCGTAAATCATA+TGG 0.477047 6:+110338197 None:intergenic
AAGTCCAGCATCAGAATATC+CGG 0.478469 6:-110339550 MsG0680035664.01.T01:CDS
GGGTAACAGCTTGGTCCATA+AGG 0.478495 6:-110338697 MsG0680035664.01.T01:CDS
TTTGAGGGTGGAATTTGAAA+AGG 0.479151 6:+110342814 None:intergenic
CGGATCTCGGAAGGAGATTG+AGG 0.480710 6:-110338754 MsG0680035664.01.T01:CDS
CGGAAGCGTTTGTGCAAATG+TGG 0.481614 6:-110339574 MsG0680035664.01.T01:CDS
CAGCTTGGTCCATAAGGAAA+AGG 0.483406 6:-110338691 MsG0680035664.01.T01:CDS
AGAGCTACCTCTTTGGGGCA+TGG 0.486812 6:-110338320 MsG0680035664.01.T01:three_prime_UTR
ATTTCATGAGGTTCAAGAAA+GGG 0.490455 6:-110342712 MsG0680035664.01.T01:CDS
ATTTCCGGATATTCTGATGC+TGG 0.491392 6:+110339546 None:intergenic
TGATGTAAGTGCTGCTATGA+AGG 0.492495 6:-110339505 MsG0680035664.01.T01:CDS
TGAGACCTTCCAATTACTCC+AGG 0.492747 6:-110339876 MsG0680035664.01.T01:intron
TTGAGGGTGGAATTTGAAAA+GGG 0.494338 6:+110342815 None:intergenic
AAAAGGCCAACAAGCGGCAT+AGG 0.495123 6:+110339603 None:intergenic
CTGGCCACTGTCTTCAGAAA+CGG 0.497502 6:+110338647 None:intergenic
CATCGACTCAACAAGAAAAT+GGG 0.498261 6:-110342772 MsG0680035664.01.T01:CDS
TTATGAAATGGTAGCTAGCA+AGG 0.507890 6:-110340077 MsG0680035664.01.T01:CDS
GAGTTCGATTTAGTCCCGTC+TGG 0.510649 6:-110338728 MsG0680035664.01.T01:CDS
ACTCAAGTGTTCTACATATG+TGG 0.513154 6:-110338261 MsG0680035664.01.T01:three_prime_UTR
TAAGATTGCCATACTTTATG+GGG 0.513897 6:-110338789 MsG0680035664.01.T01:CDS
CAACGGCCAACCTGAAGCCC+TGG 0.516595 6:+110338628 None:intergenic
ATCAGAATATCCGGAAATAG+AGG 0.519580 6:-110339541 MsG0680035664.01.T01:CDS
GTTTCTGAAGACAGTGGCCA+GGG 0.542598 6:-110338645 MsG0680035664.01.T01:CDS
GATTTCATGAGGTTCAAGAA+AGG 0.544931 6:-110342713 MsG0680035664.01.T01:CDS
CAATCTTGGCGGTGGATCTG+TGG 0.546535 6:-110338568 MsG0680035664.01.T01:CDS
CGGAAATAGAGGCGTTGTCA+AGG 0.546770 6:-110339530 MsG0680035664.01.T01:CDS
GTAAAGCTTGACACAAAATA+CGG 0.549495 6:-110338900 MsG0680035664.01.T01:intron
ACAGAAATTCTTCGGTATGT+TGG 0.549627 6:-110338494 MsG0680035664.01.T01:CDS
AGAGAATATGAGAAACCCTA+TGG 0.555242 6:-110340047 MsG0680035664.01.T01:CDS
CGATTTAGTCCCGTCTGGTG+TGG 0.555780 6:-110338723 MsG0680035664.01.T01:CDS
GAACCTCATGAAATCTGCAA+TGG 0.556856 6:+110342721 None:intergenic
TTCCGGAAGATCTTGATCCA+TGG 0.559662 6:-110339659 MsG0680035664.01.T01:CDS
TAGTCCCGTCTGGTGTGGAG+TGG 0.563205 6:-110338718 MsG0680035664.01.T01:CDS
GTTGAACCGTTATCAGACAT+TGG 0.564903 6:-110338609 MsG0680035664.01.T01:CDS
CCCATTTCCATGCCCCAAAG+AGG 0.566399 6:+110338313 None:intergenic
GCCACATGCCGGATCTCGGA+AGG 0.567733 6:-110338763 MsG0680035664.01.T01:CDS
ACAAAATACGGCAGATGTGG+AGG 0.568405 6:-110338888 MsG0680035664.01.T01:CDS
CATAAAAGCTTGGATCTCCA+TGG 0.568942 6:+110339642 None:intergenic
GGATCTCGGAAGGAGATTGA+GGG 0.569864 6:-110338753 MsG0680035664.01.T01:CDS
GCAAAGCCAATGTCTGATAA+CGG 0.573019 6:+110338603 None:intergenic
CCTCAAAAGAGCAATGGACA+AGG 0.574667 6:-110338819 MsG0680035664.01.T01:CDS
AGGACTCAAGCTCCTTCTGG+AGG 0.576534 6:+110340113 None:intergenic
AGGGTGGAATTTGAAAAGGG+TGG 0.581692 6:+110342818 None:intergenic
TCAAGATCTTCCGGAATCGA+AGG 0.584753 6:+110339666 None:intergenic
CGAGAACCTCAAAAGAGCAA+TGG 0.588813 6:-110338825 MsG0680035664.01.T01:CDS
AATGAAGATGATGATGATGA+AGG 0.589533 6:+110342902 None:intergenic
GTGTGGAGTGGGTAACAGCT+TGG 0.589810 6:-110338706 MsG0680035664.01.T01:CDS
AGTCCCGTCTGGTGTGGAGT+GGG 0.591895 6:-110338717 MsG0680035664.01.T01:CDS
GACACAAAATACGGCAGATG+TGG 0.592912 6:-110338891 MsG0680035664.01.T01:CDS
ATTCCATTGCAGATTTCATG+AGG 0.598572 6:-110342724 MsG0680035664.01.T01:CDS
AATGTCTGATAACGGTTCAA+CGG 0.600103 6:+110338611 None:intergenic
CGGATGTTAGTCTCTTTGCA+AGG 0.600216 6:+110339478 None:intergenic
ACGTGAAGCCCATAAAAGCT+TGG 0.603332 6:+110339632 None:intergenic
TTACCCACTCCACACCAGAC+GGG 0.604590 6:+110338714 None:intergenic
TATGACTCTTAGATCTACAA+AGG 0.610478 6:-110339700 MsG0680035664.01.T01:CDS
TCCTTCCGAGATCCGGCATG+TGG 0.610617 6:+110338762 None:intergenic
TTAAAAGGATCACAAACTAG+AGG 0.613345 6:-110340013 MsG0680035664.01.T01:CDS
GGAGCTATTCTTCGGTACCA+CGG 0.617266 6:-110338540 MsG0680035664.01.T01:CDS
TGGATGCATCCAAAGACAGA+TGG 0.619679 6:-110339978 MsG0680035664.01.T01:CDS
AAAGGCTTCAAAAGAGACCA+AGG 0.623114 6:+110342632 None:intergenic
CAGTGGCCAGGGCTTCAGGT+TGG 0.625647 6:-110338634 MsG0680035664.01.T01:CDS
CAAAACCTGGAGTAATTGGA+AGG 0.627573 6:+110339871 None:intergenic
GGACTCAAGCTCCTTCTGGA+GGG 0.634976 6:+110340114 None:intergenic
GTTACCCACTCCACACCAGA+CGG 0.637773 6:+110338713 None:intergenic
AACATACCGAAGAATTTCTG+TGG 0.646117 6:+110338496 None:intergenic
GGAAGCGTTTGTGCAAATGT+GGG 0.646979 6:-110339573 MsG0680035664.01.T01:CDS
AAGATTGCCATACTTTATGG+GGG 0.660170 6:-110338788 MsG0680035664.01.T01:CDS
CTCAAAAGAGCAATGGACAA+GGG 0.666275 6:-110338818 MsG0680035664.01.T01:CDS
TCTCGGAAGGAGATTGAGGG+AGG 0.670087 6:-110338750 MsG0680035664.01.T01:CDS
ACTTCCGTTTCTGAAGACAG+TGG 0.695232 6:-110338651 MsG0680035664.01.T01:CDS
TTCATAAAGGACACAATCGT+AGG 0.698872 6:+110340093 None:intergenic
ATCAGAGACCCAATTCACCG+TGG 0.790349 6:+110338523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATGAACTAAATATTT+CGG + Chr6:110340326-110340345 None:intergenic 10.0%
!!! ATATTTAGTTCATAATAAAA+TGG - Chr6:110340328-110340347 MsG0680035664.01.T01:intron 10.0%
!! AATTATTACCATATGATTTA+CGG - Chr6:110342992-110343011 MsG0680035664.01.T01:five_prime_UTR 15.0%
!! TAAACATTTATGTAAGTATT+TGG + Chr6:110339721-110339740 None:intergenic 15.0%
!! TTTAGTAAGTTTATGATAAT+TGG - Chr6:110339644-110339663 MsG0680035664.01.T01:CDS 15.0%
!!! TGTATAGTTTTAGATATTTA+TGG - Chr6:110340100-110340119 MsG0680035664.01.T01:CDS 15.0%
!!! TTTCTTGTTTTTTCTTAATT+GGG - Chr6:110338615-110338634 MsG0680035664.01.T01:CDS 15.0%
!!! TTTTGTTTTTTTGTTTAGAA+TGG - Chr6:110338642-110338661 MsG0680035664.01.T01:CDS 15.0%
!! GAAAGATTATGAAGAATTAT+GGG - Chr6:110339998-110340017 MsG0680035664.01.T01:CDS 20.0%
!! TTAAAAGATGATATGATCAT+TGG - Chr6:110342729-110342748 MsG0680035664.01.T01:CDS 20.0%
!! TTACAATCAAAGTTAAAATG+AGG - Chr6:110339578-110339597 MsG0680035664.01.T01:CDS 20.0%
!!! AAAACAAGTTTTGATTTTGA+GGG + Chr6:110338401-110338420 None:intergenic 20.0%
!!! AATATCTCCTATTAGTTTAT+AGG - Chr6:110342018-110342037 MsG0680035664.01.T01:intron 20.0%
!!! ATAGTTTTAGATATTTATGG+AGG - Chr6:110340103-110340122 MsG0680035664.01.T01:CDS 20.0%
!!! CTTTCTTGTTTTTTCTTAAT+TGG - Chr6:110338614-110338633 MsG0680035664.01.T01:CDS 20.0%
!!! TTAAGTTGTTTATCCAAAAA+GGG + Chr6:110338802-110338821 None:intergenic 20.0%
!!! TTGTAATTTTTTTTCCCTTT+TGG - Chr6:110338754-110338773 MsG0680035664.01.T01:CDS 20.0%
! AAAACTACCAAATTCCAAAA+GGG + Chr6:110338771-110338790 None:intergenic 25.0%
! AAAATCAATCAGCGAAAAAA+AGG + Chr6:110339354-110339373 None:intergenic 25.0%
! AAATCAATCAGCGAAAAAAA+GGG + Chr6:110339353-110339372 None:intergenic 25.0%
! AATAAGATTGCCATACTTTA+TGG - Chr6:110342406-110342425 MsG0680035664.01.T01:intron 25.0%
! AATAATATTAGCAGTACCTT+TGG - Chr6:110340432-110340451 MsG0680035664.01.T01:intron 25.0%
! AATACCTGCTCATAAAAATT+AGG + Chr6:110341057-110341076 None:intergenic 25.0%
! ATAAGATTGCCATACTTTAT+GGG - Chr6:110342407-110342426 MsG0680035664.01.T01:intron 25.0%
! ATCATAGTACAACACAAAAA+TGG - Chr6:110338243-110338262 MsG0680035664.01.T01:three_prime_UTR 25.0%
! ATGCATGTAATCATAAGAAA+TGG - Chr6:110342910-110342929 MsG0680035664.01.T01:CDS 25.0%
! ATGGCTAAAAAAAGGTTAAA+AGG - Chr6:110341169-110341188 MsG0680035664.01.T01:intron 25.0%
! GAGTTTGTATAAATTTGTAC+TGG + Chr6:110341767-110341786 None:intergenic 25.0%
! GATGATAACTCTAACATAAT+TGG - Chr6:110339295-110339314 MsG0680035664.01.T01:intron 25.0%
! GGAAAGATTATGAAGAATTA+TGG - Chr6:110339997-110340016 MsG0680035664.01.T01:CDS 25.0%
! GTATGTTATGATTCTCATTT+CGG - Chr6:110340587-110340606 MsG0680035664.01.T01:intron 25.0%
! TAAAACTACCAAATTCCAAA+AGG + Chr6:110338772-110338791 None:intergenic 25.0%
! TATTTATATGTTGTTGACCA+TGG - Chr6:110339273-110339292 MsG0680035664.01.T01:intron 25.0%
! TCTGTTTCCTTATTAGTTAT+AGG - Chr6:110338876-110338895 MsG0680035664.01.T01:CDS 25.0%
! TTATCAGTAGTGTTAGTATT+GGG - Chr6:110339486-110339505 MsG0680035664.01.T01:CDS 25.0%
! TTTAAACCAACCTGAAAAAA+AGG + Chr6:110338586-110338605 None:intergenic 25.0%
! TTTATCATCAATACTCAAGT+TGG + Chr6:110342268-110342287 None:intergenic 25.0%
!! CTCTTAAAACTTTGAGAAAT+GGG + Chr6:110342861-110342880 None:intergenic 25.0%
!! CTTAAGTTGTTTATCCAAAA+AGG + Chr6:110338803-110338822 None:intergenic 25.0%
!! TTTTGTTCAAACTTTCGTTT+AGG - Chr6:110340197-110340216 MsG0680035664.01.T01:intron 25.0%
!!! ACTAGAGGTTTTAACATTAT+TGG - Chr6:110341199-110341218 MsG0680035664.01.T01:intron 25.0%
!!! CAAAACAAGTTTTGATTTTG+AGG + Chr6:110338402-110338421 None:intergenic 25.0%
!!! TTAACCTTTTTTTAGCCATA+GGG + Chr6:110341168-110341187 None:intergenic 25.0%
!!! TTTAACCTTTTTTTAGCCAT+AGG + Chr6:110341169-110341188 None:intergenic 25.0%
!!! TTTTTATTTCAGCAAGCAAA+AGG - Chr6:110341447-110341466 MsG0680035664.01.T01:intron 25.0%
!!! TTTTTTCGCTGATTGATTTT+TGG - Chr6:110339354-110339373 MsG0680035664.01.T01:intron 25.0%
!!! TTTTTTTCCCTTTTGGAATT+TGG - Chr6:110338761-110338780 MsG0680035664.01.T01:CDS 25.0%
AAAATTAGCAACACAAAACC+TGG + Chr6:110341342-110341361 None:intergenic 30.0%
AAGAAAAGAAGGAAAAGCTT+TGG + Chr6:110338344-110338363 None:intergenic 30.0%
AAGTGAGACTTAAATGTCAA+AGG - Chr6:110340866-110340885 MsG0680035664.01.T01:intron 30.0%
ACATTTAAGTCTCACTTCTT+AGG + Chr6:110340863-110340882 None:intergenic 30.0%
AGACAATACATACTCTTCAT+CGG + Chr6:110339324-110339343 None:intergenic 30.0%
AGTGAGACTTAAATGTCAAA+GGG - Chr6:110340867-110340886 MsG0680035664.01.T01:intron 30.0%
ATCCAACAAAAGAAATGGAT+AGG + Chr6:110339869-110339888 None:intergenic 30.0%
ATGTTACCACAGAAATTCTT+CGG - Chr6:110342695-110342714 MsG0680035664.01.T01:CDS 30.0%
ATTTCATGAGGTTCAAGAAA+GGG - Chr6:110338485-110338504 MsG0680035664.01.T01:exon 30.0%
CATTGAGAATAATGACTTCT+CGG - Chr6:110340693-110340712 MsG0680035664.01.T01:intron 30.0%
CTTATCAGTAGTGTTAGTAT+TGG - Chr6:110339485-110339504 MsG0680035664.01.T01:CDS 30.0%
GAAACAGCCTATAACTAATA+AGG + Chr6:110338886-110338905 None:intergenic 30.0%
GAGGAGAAATCTGTTATAAT+CGG - Chr6:110342328-110342347 MsG0680035664.01.T01:intron 30.0%
GATATAAGAAGAAGTTTCCT+TGG - Chr6:110338548-110338567 MsG0680035664.01.T01:CDS 30.0%
GGTAATTGAGACAATCTAAT+TGG + Chr6:110341267-110341286 None:intergenic 30.0%
GTAAAGCTTGACACAAAATA+CGG - Chr6:110342297-110342316 MsG0680035664.01.T01:intron 30.0%
TAAAAGTTAATACTGCTTCG+AGG + Chr6:110341023-110341042 None:intergenic 30.0%
TAAGATTGCCATACTTTATG+GGG - Chr6:110342408-110342427 MsG0680035664.01.T01:intron 30.0%
TATCAGTAGTGTTAGTATTG+GGG - Chr6:110339487-110339506 MsG0680035664.01.T01:CDS 30.0%
TATGACTCTTAGATCTACAA+AGG - Chr6:110341497-110341516 MsG0680035664.01.T01:intron 30.0%
TATGTTAGAGTTATCATCCA+TGG + Chr6:110339293-110339312 None:intergenic 30.0%
TCAATTACCAGTCTGAAAAT+TGG - Chr6:110341278-110341297 MsG0680035664.01.T01:intron 30.0%
TGTACATCTATTGATGTTGT+TGG - Chr6:110340229-110340248 MsG0680035664.01.T01:intron 30.0%
TTAAAAGGATCACAAACTAG+AGG - Chr6:110341184-110341203 MsG0680035664.01.T01:intron 30.0%
! AATGAAGATGATGATGATGA+AGG + Chr6:110338298-110338317 None:intergenic 30.0%
! ATCAAGTTTCCTTTTCCTTA+TGG + Chr6:110342518-110342537 None:intergenic 30.0%
! ATCCATTTCTTTTGTTGGAT+AGG - Chr6:110339869-110339888 MsG0680035664.01.T01:intron 30.0%
! GCTCTTAAAACTTTGAGAAA+TGG + Chr6:110342862-110342881 None:intergenic 30.0%
! TGATCCTAATTTTTATGAGC+AGG - Chr6:110341050-110341069 MsG0680035664.01.T01:intron 30.0%
! TTTTATGAGCAGGTATTTTC+TGG - Chr6:110341060-110341079 MsG0680035664.01.T01:intron 30.0%
!! TAGTTTTCAAGAGCAACTTA+AGG - Chr6:110339383-110339402 MsG0680035664.01.T01:intron 30.0%
!!! TCTTTTGAAGCCTTTTTTTC+AGG - Chr6:110338573-110338592 MsG0680035664.01.T01:CDS 30.0%
!!! TTGTCATTTTAGTGCATGTT+TGG - Chr6:110341828-110341847 MsG0680035664.01.T01:intron 30.0%
AAACCTTATCCATAACCACA+TGG + Chr6:110340153-110340172 None:intergenic 35.0%
AAATCAATCATGAGAACAGG+TGG - Chr6:110340021-110340040 MsG0680035664.01.T01:CDS 35.0%
AACACAAAACCTGGAGTAAT+TGG + Chr6:110341333-110341352 None:intergenic 35.0%
AACATACCGAAGAATTTCTG+TGG + Chr6:110342704-110342723 None:intergenic 35.0%
AACCTTATCCATAACCACAT+GGG + Chr6:110340152-110340171 None:intergenic 35.0%
AAGAAATTTGGGTATGGATG+AGG - Chr6:110339946-110339965 MsG0680035664.01.T01:CDS 35.0%
AAGATTGCCATACTTTATGG+GGG - Chr6:110342409-110342428 MsG0680035664.01.T01:intron 35.0%
ACAGAAATTCTTCGGTATGT+TGG - Chr6:110342703-110342722 MsG0680035664.01.T01:CDS 35.0%
ACTCAAGTGTTCTACATATG+TGG - Chr6:110342936-110342955 MsG0680035664.01.T01:CDS 35.0%
AGAAATTTGGGTATGGATGA+GGG - Chr6:110339947-110339966 MsG0680035664.01.T01:CDS 35.0%
AGAGAATATGAGAAACCCTA+TGG - Chr6:110341150-110341169 MsG0680035664.01.T01:intron 35.0%
AGATCATGCCAAAATCATTG+TGG + Chr6:110341886-110341905 None:intergenic 35.0%
AGCCTATCCAACAAAAGAAA+TGG + Chr6:110339874-110339893 None:intergenic 35.0%
AGTCTTAAATCCAAACACTC+TGG - Chr6:110339908-110339927 MsG0680035664.01.T01:CDS 35.0%
AGTTATGAGCATAAGCCTAA+AGG + Chr6:110340933-110340952 None:intergenic 35.0%
ATCAGAATATCCGGAAATAG+AGG - Chr6:110341656-110341675 MsG0680035664.01.T01:intron 35.0%
ATTCCATTGCAGATTTCATG+AGG - Chr6:110338473-110338492 MsG0680035664.01.T01:exon 35.0%
CATCTTCATGACTTCACAAA+AGG + Chr6:110340514-110340533 None:intergenic 35.0%
CATTGAGTGAAATTTGTCGT+AGG - Chr6:110340783-110340802 MsG0680035664.01.T01:intron 35.0%
CGATTGTGTCCTTTATGAAA+TGG - Chr6:110341108-110341127 MsG0680035664.01.T01:intron 35.0%
CTTGTGAACCGTAAATCATA+TGG + Chr6:110343003-110343022 None:intergenic 35.0%
GAAACCCTATGGCTAAAAAA+AGG - Chr6:110341161-110341180 MsG0680035664.01.T01:intron 35.0%
GATTTCATGAGGTTCAAGAA+AGG - Chr6:110338484-110338503 MsG0680035664.01.T01:exon 35.0%
GGAAAACCAACAAGAAAAGA+AGG + Chr6:110338355-110338374 None:intergenic 35.0%
GTGTTGTACTATGATGTTGT+TGG + Chr6:110338238-110338257 None:intergenic 35.0%
GTTATGAGCATAAGCCTAAA+GGG + Chr6:110340932-110340951 None:intergenic 35.0%
TATGGAAATAAGCAGAAAGC+AGG - Chr6:110338927-110338946 MsG0680035664.01.T01:intron 35.0%
TCATATGAGCATAAGTCCAA+AGG + Chr6:110340663-110340682 None:intergenic 35.0%
TGAGTTTGACGAAATCATGT+CGG + Chr6:110341926-110341945 None:intergenic 35.0%
TGCTAGCTACCATTTCATAA+AGG + Chr6:110341120-110341139 None:intergenic 35.0%
TGTGGTTATGGATAAGGTTT+AGG - Chr6:110340153-110340172 MsG0680035664.01.T01:intron 35.0%
TTAGAACTCAATGAGTTCCA+TGG - Chr6:110339153-110339172 MsG0680035664.01.T01:intron 35.0%
TTATGAAATGGTAGCTAGCA+AGG - Chr6:110341120-110341139 MsG0680035664.01.T01:intron 35.0%
TTCATAAAGGACACAATCGT+AGG + Chr6:110341107-110341126 None:intergenic 35.0%
TTGAGGGTGGAATTTGAAAA+GGG + Chr6:110338385-110338404 None:intergenic 35.0%
TTGCTTTGTAGAAACTGTTC+TGG + Chr6:110338454-110338473 None:intergenic 35.0%
TTTGAGGGTGGAATTTGAAA+AGG + Chr6:110338386-110338405 None:intergenic 35.0%
! AGAGCAACTTAAGGTTTGTT+TGG - Chr6:110339392-110339411 MsG0680035664.01.T01:intron 35.0%
! AGCCTATCCATTTCTTTTGT+TGG - Chr6:110339864-110339883 MsG0680035664.01.T01:intron 35.0%
! ATCAGTAGTGTTAGTATTGG+GGG - Chr6:110339488-110339507 MsG0680035664.01.T01:CDS 35.0%
! ATGGAGATCCAAGCTTTTAT+GGG - Chr6:110341557-110341576 MsG0680035664.01.T01:intron 35.0%
! ATGTTGTTGGATTTTGTTGC+AGG + Chr6:110338225-110338244 None:intergenic 35.0%
! ATTGGAGGAGTATGTGTAAA+TGG - Chr6:110340257-110340276 MsG0680035664.01.T01:intron 35.0%
! GAATTTGAAAAGGGTGGTTT+TGG + Chr6:110338376-110338395 None:intergenic 35.0%
! GCTTTTCCTTCTTTTCTTGT+TGG - Chr6:110338346-110338365 MsG0680035664.01.T01:three_prime_UTR 35.0%
!! AATGATTAGCACTCTGAGAT+TGG + Chr6:110340179-110340198 None:intergenic 35.0%
!! AATGTCTGATAACGGTTCAA+CGG + Chr6:110342589-110342608 None:intergenic 35.0%
!! AGACTGTTCAAGAGAGTATT+TGG + Chr6:110338977-110338996 None:intergenic 35.0%
!! CATCGACTCAACAAGAAAAT+GGG - Chr6:110338425-110338444 MsG0680035664.01.T01:three_prime_UTR 35.0%
!! CGCTGATTGATTTTTGGATT+TGG - Chr6:110339360-110339379 MsG0680035664.01.T01:intron 35.0%
!! TCATCGACTCAACAAGAAAA+TGG - Chr6:110338424-110338443 MsG0680035664.01.T01:three_prime_UTR 35.0%
!! TTTTAAGAGCTACCTCTTTG+GGG - Chr6:110342872-110342891 MsG0680035664.01.T01:CDS 35.0%
!!! ACAAGTTTTGATTTTGAGGG+TGG + Chr6:110338398-110338417 None:intergenic 35.0%
!!! ACAATTCACAGGGTTTTTTG+AGG - Chr6:110339976-110339995 MsG0680035664.01.T01:CDS 35.0%
!!! AGATCCCACTGTTTTAGAAA+TGG + Chr6:110342085-110342104 None:intergenic 35.0%
!!! AGTTTTAAGAGCTACCTCTT+TGG - Chr6:110342870-110342889 MsG0680035664.01.T01:CDS 35.0%
!!! GATCCCACTGTTTTAGAAAT+GGG + Chr6:110342084-110342103 None:intergenic 35.0%
!!! GTTTTAAGAGCTACCTCTTT+GGG - Chr6:110342871-110342890 MsG0680035664.01.T01:CDS 35.0%
!!! GTTTTAGCTTAGTCCCTTTT+TGG - Chr6:110338786-110338805 MsG0680035664.01.T01:CDS 35.0%
!!! TTGAAGCCTTTTTTTCAGGT+TGG - Chr6:110338577-110338596 MsG0680035664.01.T01:CDS 35.0%
AAACACTCTCACTGAGTGTT+TGG - Chr6:110339807-110339826 MsG0680035664.01.T01:intron 40.0%
AAACGCTTCCGATGAGAAAA+AGG + Chr6:110341614-110341633 None:intergenic 40.0%
AAAGGCTTCAAAAGAGACCA+AGG + Chr6:110338568-110338587 None:intergenic 40.0%
AAGCTATCATGGAGAGACTA+TGG - Chr6:110338909-110338928 MsG0680035664.01.T01:intron 40.0%
AAGTCCAGCATCAGAATATC+CGG - Chr6:110341647-110341666 MsG0680035664.01.T01:intron 40.0%
AAGTGAGGCTTATAAGCCTA+GGG - Chr6:110340622-110340641 MsG0680035664.01.T01:intron 40.0%
AATCATGAGAACAGGTGGAT+AGG - Chr6:110340026-110340045 MsG0680035664.01.T01:CDS 40.0%
ACAGCAACTTAGAGCATGTT+TGG - Chr6:110339058-110339077 MsG0680035664.01.T01:intron 40.0%
ACTTCACTCAACTTCTTCAG+TGG + Chr6:110340748-110340767 None:intergenic 40.0%
AGAATAATGACTTCTCGGTC+AGG - Chr6:110340698-110340717 MsG0680035664.01.T01:intron 40.0%
AGCTTCTTGAGTTCTCAAAG+AGG - Chr6:110339190-110339209 MsG0680035664.01.T01:intron 40.0%
AGGTTCAAGAAAGGGATTGA+TGG - Chr6:110338493-110338512 MsG0680035664.01.T01:CDS 40.0%
AGTCTCTCCATGATAGCTTA+TGG + Chr6:110338908-110338927 None:intergenic 40.0%
ATACAAACTCTTGCTCCTGT+AGG - Chr6:110341777-110341796 MsG0680035664.01.T01:intron 40.0%
ATGAGAAAAAGGCCAACAAG+CGG + Chr6:110341603-110341622 None:intergenic 40.0%
ATTTCCGGATATTCTGATGC+TGG + Chr6:110341654-110341673 None:intergenic 40.0%
CAAAACCTGGAGTAATTGGA+AGG + Chr6:110341329-110341348 None:intergenic 40.0%
CAAAGGGTTCTTTCACCTAA+TGG - Chr6:110340883-110340902 MsG0680035664.01.T01:intron 40.0%
CAAATTGAGAGGGACTTACT+CGG + Chr6:110341742-110341761 None:intergenic 40.0%
CATAAAAGCTTGGATCTCCA+TGG + Chr6:110341558-110341577 None:intergenic 40.0%
CTCAAAAGAGCAATGGACAA+GGG - Chr6:110342379-110342398 MsG0680035664.01.T01:intron 40.0%
CTGAGGTGAACAAGTAGAAT+TGG - Chr6:110340068-110340087 MsG0680035664.01.T01:CDS 40.0%
GAAATTTGGGTATGGATGAG+GGG - Chr6:110339948-110339967 MsG0680035664.01.T01:CDS 40.0%
GAACCTCATGAAATCTGCAA+TGG + Chr6:110338479-110338498 None:intergenic 40.0%
GAAGAAGTTGAGTGAAGTGT+CGG - Chr6:110340750-110340769 MsG0680035664.01.T01:intron 40.0%
GAATAATGACTTCTCGGTCA+GGG - Chr6:110340699-110340718 MsG0680035664.01.T01:intron 40.0%
GAATTTGAGCCATCTGTCTT+TGG + Chr6:110341231-110341250 None:intergenic 40.0%
GAGCATAAGTCCAAAGGATT+AGG + Chr6:110340657-110340676 None:intergenic 40.0%
GATTCTCTCACCTAATCCTT+TGG - Chr6:110340644-110340663 MsG0680035664.01.T01:intron 40.0%
GCAAAGCCAATGTCTGATAA+CGG + Chr6:110342597-110342616 None:intergenic 40.0%
GGAGGGACCTATAAACTAAT+AGG + Chr6:110342028-110342047 None:intergenic 40.0%
GGGAAATCAATCATGAGAAC+AGG - Chr6:110340018-110340037 MsG0680035664.01.T01:CDS 40.0%
GTCAGGAGACTTAATTTCTG+AGG - Chr6:110340051-110340070 MsG0680035664.01.T01:CDS 40.0%
GTTAGGCGGCAAAGAAATTT+GGG - Chr6:110339935-110339954 MsG0680035664.01.T01:CDS 40.0%
GTTGAACCGTTATCAGACAT+TGG - Chr6:110342588-110342607 MsG0680035664.01.T01:intron 40.0%
TAAGTGAGGCTTATAAGCCT+AGG - Chr6:110340621-110340640 MsG0680035664.01.T01:intron 40.0%
TACAAACTCTTGCTCCTGTA+GGG - Chr6:110341778-110341797 MsG0680035664.01.T01:intron 40.0%
TAGGCTTATAAGCCTCACTT+AGG + Chr6:110340622-110340641 None:intergenic 40.0%
TCGCAAAACACTAGTCCATT+AGG + Chr6:110340901-110340920 None:intergenic 40.0%
TGTACTGGACCAAATTGAGA+GGG + Chr6:110341752-110341771 None:intergenic 40.0%
TTAGTGCATGTTTGGATCCA+TGG - Chr6:110341836-110341855 MsG0680035664.01.T01:intron 40.0%
TTGTACTGGACCAAATTGAG+AGG + Chr6:110341753-110341772 None:intergenic 40.0%
! AAAGGGATTGATGGTTCTAC+TGG - Chr6:110338502-110338521 MsG0680035664.01.T01:CDS 40.0%
! ACTGTGTGCCACAATGATTT+TGG - Chr6:110341875-110341894 MsG0680035664.01.T01:intron 40.0%
! CATCTTTTCGTCAATCTTGG+CGG - Chr6:110342618-110342637 MsG0680035664.01.T01:intron 40.0%
! CATGGAGATCCAAGCTTTTA+TGG - Chr6:110341556-110341575 MsG0680035664.01.T01:intron 40.0%
! CATGTTGCCAATTTTCAGAC+TGG + Chr6:110341288-110341307 None:intergenic 40.0%
! GCTCATCTTTTCGTCAATCT+TGG - Chr6:110342615-110342634 MsG0680035664.01.T01:intron 40.0%
! GCTGTTTCCATAAGCTATCA+TGG - Chr6:110338898-110338917 MsG0680035664.01.T01:intron 40.0%
! TCTGTTGTTGTTGTTGTTGC+AGG - Chr6:110338678-110338697 MsG0680035664.01.T01:CDS 40.0%
! TGATGTAAGTGCTGCTATGA+AGG - Chr6:110341692-110341711 MsG0680035664.01.T01:intron 40.0%
!! GGAAAAGCTTTGGAAGTTGA+TGG + Chr6:110338334-110338353 None:intergenic 40.0%
!! TTGATGTTGTTGGTGACGAT+TGG - Chr6:110340239-110340258 MsG0680035664.01.T01:intron 40.0%
!!! CTTGTTGGCCTTTTTCTCAT+CGG - Chr6:110341603-110341622 MsG0680035664.01.T01:intron 40.0%
!!! TGGTTTTGGGAGCTATTCTT+CGG - Chr6:110342649-110342668 MsG0680035664.01.T01:CDS 40.0%
AATGTTGCAGCCTTCGATTC+CGG - Chr6:110341521-110341540 MsG0680035664.01.T01:intron 45.0%
ACAAAATACGGCAGATGTGG+AGG - Chr6:110342309-110342328 MsG0680035664.01.T01:intron 45.0%
ACAATGTGTGTGTGTGTGTG+TGG + Chr6:110338201-110338220 None:intergenic 45.0%
ACGTGAAGCCCATAAAAGCT+TGG + Chr6:110341568-110341587 None:intergenic 45.0%
AGCCCATGTGGTTATGGATA+AGG - Chr6:110340147-110340166 MsG0680035664.01.T01:intron 45.0%
AGGGGCTGATACAATTCACA+GGG - Chr6:110339966-110339985 MsG0680035664.01.T01:CDS 45.0%
AGGGTGGAATTTGAAAAGGG+TGG + Chr6:110338382-110338401 None:intergenic 45.0%
AGGTCCCTCCAGATTTATGT+GGG - Chr6:110342038-110342057 MsG0680035664.01.T01:intron 45.0%
ATCCTGACATTCAACTGCCA+CGG - Chr6:110340366-110340385 MsG0680035664.01.T01:intron 45.0%
ATTAGCAGTACCTTTGGCGT+GGG - Chr6:110340438-110340457 MsG0680035664.01.T01:intron 45.0%
ATTGCCATACTTTATGGGGG+TGG - Chr6:110342412-110342431 MsG0680035664.01.T01:intron 45.0%
CAGCTTGGTCCATAAGGAAA+AGG - Chr6:110342506-110342525 MsG0680035664.01.T01:intron 45.0%
CCTCAAAAGAGCAATGGACA+AGG - Chr6:110342378-110342397 MsG0680035664.01.T01:intron 45.0%
CGAGAACCTCAAAAGAGCAA+TGG - Chr6:110342372-110342391 MsG0680035664.01.T01:intron 45.0%
CGAGTAAGTCCCTCTCAATT+TGG - Chr6:110341740-110341759 MsG0680035664.01.T01:intron 45.0%
CGTTAGGCGGCAAAGAAATT+TGG - Chr6:110339934-110339953 MsG0680035664.01.T01:CDS 45.0%
CTCCATGGATCAAGATCTTC+CGG + Chr6:110341543-110341562 None:intergenic 45.0%
CTTGACAACGCCTCTATTTC+CGG + Chr6:110341669-110341688 None:intergenic 45.0%
GACACAAAATACGGCAGATG+TGG - Chr6:110342306-110342325 MsG0680035664.01.T01:intron 45.0%
GACAGATGGCTCAAATTCTC+AGG - Chr6:110341233-110341252 MsG0680035664.01.T01:intron 45.0%
GATTAGGTGAGAGAATCCCT+AGG + Chr6:110340641-110340660 None:intergenic 45.0%
GCGGCAAAGAAATTTGGGTA+TGG - Chr6:110339940-110339959 MsG0680035664.01.T01:CDS 45.0%
GGTTCACAAGAACACCAAGT+TGG - Chr6:110343013-110343032 MsG0680035664.01.T01:five_prime_UTR 45.0%
GTTTGGATCCATGGTGAGTT+TGG - Chr6:110341845-110341864 MsG0680035664.01.T01:intron 45.0%
TAGGTCCCTCCAGATTTATG+TGG - Chr6:110342037-110342056 MsG0680035664.01.T01:intron 45.0%
TATTAGCAGTACCTTTGGCG+TGG - Chr6:110340437-110340456 MsG0680035664.01.T01:intron 45.0%
TCAAGATCTTCCGGAATCGA+AGG + Chr6:110341534-110341553 None:intergenic 45.0%
TGAGACCTTCCAATTACTCC+AGG - Chr6:110341321-110341340 MsG0680035664.01.T01:intron 45.0%
TGATTCAGCCAAACTCACCA+TGG + Chr6:110341856-110341875 None:intergenic 45.0%
TGGATGCATCCAAAGACAGA+TGG - Chr6:110341219-110341238 MsG0680035664.01.T01:intron 45.0%
TTCCGGAAGATCTTGATCCA+TGG - Chr6:110341538-110341557 MsG0680035664.01.T01:intron 45.0%
! ACTTCCGTTTCTGAAGACAG+TGG - Chr6:110342546-110342565 MsG0680035664.01.T01:intron 45.0%
! CCTTGTCCATTGCTCTTTTG+AGG + Chr6:110342381-110342400 None:intergenic 45.0%
! CGGATGTTAGTCTCTTTGCA+AGG + Chr6:110341722-110341741 None:intergenic 45.0%
! TGGGCCCTGCATAATTTTGT+GGG - Chr6:110342057-110342076 MsG0680035664.01.T01:intron 45.0%
!! ATGTTGTTGGTGACGATTGG+AGG - Chr6:110340242-110340261 MsG0680035664.01.T01:intron 45.0%
!! GGAAGCGTTTGTGCAAATGT+GGG - Chr6:110341624-110341643 MsG0680035664.01.T01:intron 45.0%
!! GGGCCCATTTCTAAAACAGT+GGG - Chr6:110342078-110342097 MsG0680035664.01.T01:intron 45.0%
AAAAGGCCAACAAGCGGCAT+AGG + Chr6:110341597-110341616 None:intergenic 50.0%
AACACTCTGGACTCGTTAGG+CGG - Chr6:110339921-110339940 MsG0680035664.01.T01:CDS 50.0%
AGGGCCCACATAAATCTGGA+GGG + Chr6:110342045-110342064 None:intergenic 50.0%
ATCAGAGACCCAATTCACCG+TGG + Chr6:110342677-110342696 None:intergenic 50.0%
ATGCAGGGCCCACATAAATC+TGG + Chr6:110342049-110342068 None:intergenic 50.0%
CCAAACACTCTGGACTCGTT+AGG - Chr6:110339918-110339937 MsG0680035664.01.T01:CDS 50.0%
CTCAATCTCCTTCCGAGATC+CGG + Chr6:110342445-110342464 None:intergenic 50.0%
CTCGTAGCTCAAAACCCTAC+AGG + Chr6:110341795-110341814 None:intergenic 50.0%
CTGGCCACTGTCTTCAGAAA+CGG + Chr6:110342553-110342572 None:intergenic 50.0%
CTTCGGTACCACGGTGAATT+GGG - Chr6:110342666-110342685 MsG0680035664.01.T01:CDS 50.0%
GAACAGGTGGATAGGATGTC+AGG - Chr6:110340034-110340053 MsG0680035664.01.T01:CDS 50.0%
GAGGGGCTGATACAATTCAC+AGG - Chr6:110339965-110339984 MsG0680035664.01.T01:CDS 50.0%
GAGTTCGATTTAGTCCCGTC+TGG - Chr6:110342469-110342488 MsG0680035664.01.T01:intron 50.0%
GGAGCTATTCTTCGGTACCA+CGG - Chr6:110342657-110342676 MsG0680035664.01.T01:CDS 50.0%
GGATCTCGGAAGGAGATTGA+GGG - Chr6:110342444-110342463 MsG0680035664.01.T01:intron 50.0%
GGGCCCCACAAAATTATGCA+GGG + Chr6:110342064-110342083 None:intergenic 50.0%
GGGTAACAGCTTGGTCCATA+AGG - Chr6:110342500-110342519 MsG0680035664.01.T01:CDS 50.0%
GTTTGCAGCCCATGTGGTTA+TGG - Chr6:110340141-110340160 MsG0680035664.01.T01:intron 50.0%
TCCTGACATTCAACTGCCAC+GGG - Chr6:110340367-110340386 MsG0680035664.01.T01:intron 50.0%
TCTTCGGTACCACGGTGAAT+TGG - Chr6:110342665-110342684 MsG0680035664.01.T01:CDS 50.0%
TGGGCCCCACAAAATTATGC+AGG + Chr6:110342065-110342084 None:intergenic 50.0%
TTGCGACGAGCTTTCCCTTT+AGG - Chr6:110340915-110340934 MsG0680035664.01.T01:intron 50.0%
! ATCCTCGAATGATGGTGCAG+TGG - Chr6:110340811-110340830 MsG0680035664.01.T01:intron 50.0%
! CCTAACGAGTCCAGAGTGTT+TGG + Chr6:110339921-110339940 None:intergenic 50.0%
! CTTTTCGTCAATCTTGGCGG+TGG - Chr6:110342621-110342640 MsG0680035664.01.T01:intron 50.0%
! GGGCCCTGCATAATTTTGTG+GGG - Chr6:110342058-110342077 MsG0680035664.01.T01:intron 50.0%
! GTACTTCCTATGCCGCTTGT+TGG - Chr6:110341588-110341607 MsG0680035664.01.T01:intron 50.0%
! GTGGGCCCTGCATAATTTTG+TGG - Chr6:110342056-110342075 MsG0680035664.01.T01:intron 50.0%
! GTTTCTGAAGACAGTGGCCA+GGG - Chr6:110342552-110342571 MsG0680035664.01.T01:intron 50.0%
! TTCTCGGTCAGGGTTCTGAT+TGG - Chr6:110340709-110340728 MsG0680035664.01.T01:intron 50.0%
!! ACCTCTTTGGGGCATGGAAA+TGG - Chr6:110342883-110342902 MsG0680035664.01.T01:CDS 50.0%
!! AGGCATCGATCCTCGAATGA+TGG - Chr6:110340803-110340822 MsG0680035664.01.T01:intron 50.0%
!! CCTCTTTGGGGCATGGAAAT+GGG - Chr6:110342884-110342903 MsG0680035664.01.T01:CDS 50.0%
!! CGGAAATAGAGGCGTTGTCA+AGG - Chr6:110341667-110341686 MsG0680035664.01.T01:intron 50.0%
!! CGGAAGCGTTTGTGCAAATG+TGG - Chr6:110341623-110341642 MsG0680035664.01.T01:intron 50.0%
!! GCTTCTCTGAAGCTAGTCCA+TGG + Chr6:110339173-110339192 None:intergenic 50.0%
!! GGGGCCCATTTCTAAAACAG+TGG - Chr6:110342077-110342096 MsG0680035664.01.T01:intron 50.0%
!! GTATTTTCTGGCCCTCCAGA+AGG - Chr6:110341072-110341091 MsG0680035664.01.T01:intron 50.0%
!! GTGTTAGTATTGGGGGCACT+TGG - Chr6:110339495-110339514 MsG0680035664.01.T01:CDS 50.0%
AGGACTCAAGCTCCTTCTGG+AGG + Chr6:110341087-110341106 None:intergenic 55.0%
AGTTCAGCAACCCACGCCAA+AGG + Chr6:110340451-110340470 None:intergenic 55.0%
ATGGAGGTCTAGCAGACCAC+TGG - Chr6:110340119-110340138 MsG0680035664.01.T01:CDS 55.0%
CAATCTTGGCGGTGGATCTG+TGG - Chr6:110342629-110342648 MsG0680035664.01.T01:CDS 55.0%
CACCACTGCACCATCATTCG+AGG + Chr6:110340816-110340835 None:intergenic 55.0%
CAGGGCCCACATAAATCTGG+AGG + Chr6:110342046-110342065 None:intergenic 55.0%
CCCATTTCCATGCCCCAAAG+AGG + Chr6:110342887-110342906 None:intergenic 55.0%
CGATTTAGTCCCGTCTGGTG+TGG - Chr6:110342474-110342493 MsG0680035664.01.T01:intron 55.0%
CGGAGAGTCTCACCTAAGTG+AGG - Chr6:110340607-110340626 MsG0680035664.01.T01:intron 55.0%
CGGATCTCGGAAGGAGATTG+AGG - Chr6:110342443-110342462 MsG0680035664.01.T01:intron 55.0%
CGTAGGACTCAAGCTCCTTC+TGG + Chr6:110341090-110341109 None:intergenic 55.0%
GGACTCAAGCTCCTTCTGGA+GGG + Chr6:110341086-110341105 None:intergenic 55.0%
GTGGCCACCCCCATAAAGTA+TGG + Chr6:110342419-110342438 None:intergenic 55.0%
GTGGTGTGAGTCTCACACTG+TGG - Chr6:110340830-110340849 MsG0680035664.01.T01:intron 55.0%
GTGTGGAGTGGGTAACAGCT+TGG - Chr6:110342491-110342510 MsG0680035664.01.T01:CDS 55.0%
GTTACCCACTCCACACCAGA+CGG + Chr6:110342487-110342506 None:intergenic 55.0%
TCTCGGAAGGAGATTGAGGG+AGG - Chr6:110342447-110342466 MsG0680035664.01.T01:intron 55.0%
TTACCCACTCCACACCAGAC+GGG + Chr6:110342486-110342505 None:intergenic 55.0%
! CGTTTCTGAAGACAGTGGCC+AGG - Chr6:110342551-110342570 MsG0680035664.01.T01:intron 55.0%
! GGCGGTGGATCTGTGGTTTT+GGG - Chr6:110342636-110342655 MsG0680035664.01.T01:CDS 55.0%
! TCGGTCAGGGTTCTGATTGG+TGG - Chr6:110340712-110340731 MsG0680035664.01.T01:intron 55.0%
! TGGCGGTGGATCTGTGGTTT+TGG - Chr6:110342635-110342654 MsG0680035664.01.T01:CDS 55.0%
!! AGAGCTACCTCTTTGGGGCA+TGG - Chr6:110342877-110342896 MsG0680035664.01.T01:CDS 55.0%
AAGACAGTGGCCAGGGCTTC+AGG - Chr6:110342559-110342578 MsG0680035664.01.T01:intron 60.0%
ACATTCAACTGCCACGGGCG+AGG - Chr6:110340372-110340391 MsG0680035664.01.T01:intron 60.0%
AGTCCCGTCTGGTGTGGAGT+GGG - Chr6:110342480-110342499 MsG0680035664.01.T01:intron 60.0%
ATTCAACTGCCACGGGCGAG+GGG - Chr6:110340374-110340393 MsG0680035664.01.T01:intron 60.0%
CATTCAACTGCCACGGGCGA+GGG - Chr6:110340373-110340392 MsG0680035664.01.T01:intron 60.0%
GCCCGTGGCAGTTGAATGTC+AGG + Chr6:110340371-110340390 None:intergenic 60.0%
GGGGATGGAAGAGAGACACG+CGG - Chr6:110340395-110340414 MsG0680035664.01.T01:intron 60.0%
TAGTCCCGTCTGGTGTGGAG+TGG - Chr6:110342479-110342498 MsG0680035664.01.T01:intron 60.0%
TCCTTCCGAGATCCGGCATG+TGG + Chr6:110342438-110342457 None:intergenic 60.0%
TTATGGGGGTGGCCACATGC+CGG - Chr6:110342423-110342442 MsG0680035664.01.T01:intron 60.0%
! CCACATGGGCTGCAAACCAG+TGG + Chr6:110340138-110340157 None:intergenic 60.0%
!! CCACTGGTTTGCAGCCCATG+TGG - Chr6:110340135-110340154 MsG0680035664.01.T01:intron 60.0%
CAACGGCCAACCTGAAGCCC+TGG + Chr6:110342572-110342591 None:intergenic 65.0%
CAGTGGCCAGGGCTTCAGGT+TGG - Chr6:110342563-110342582 MsG0680035664.01.T01:intron 65.0%
GCCACATGCCGGATCTCGGA+AGG - Chr6:110342434-110342453 MsG0680035664.01.T01:intron 65.0%
GGTGGCCACATGCCGGATCT+CGG - Chr6:110342430-110342449 MsG0680035664.01.T01:intron 65.0%
TTCAACTGCCACGGGCGAGG+GGG - Chr6:110340375-110340394 MsG0680035664.01.T01:intron 65.0%
TCAACTGCCACGGGCGAGGG+GGG - Chr6:110340376-110340395 MsG0680035664.01.T01:intron 70.0%
CTTCCATCCCCCCTCGCCCG+TGG + Chr6:110340386-110340405 None:intergenic 75.0%
! CTGCCACGGGCGAGGGGGGA+TGG - Chr6:110340380-110340399 MsG0680035664.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110338186 110343033 110338186 ID=MsG0680035664.01;Name=MsG0680035664.01
Chr6 mRNA 110338186 110343033 110338186 ID=MsG0680035664.01.T01;Parent=MsG0680035664.01;Name=MsG0680035664.01.T01;_AED=0.45;_eAED=0.45;_QI=76|1|1|1|1|1|5|301|451
Chr6 exon 110338186 110338916 110338186 ID=MsG0680035664.01.T01:exon:8845;Parent=MsG0680035664.01.T01
Chr6 exon 110339477 110339760 110339477 ID=MsG0680035664.01.T01:exon:8844;Parent=MsG0680035664.01.T01
Chr6 exon 110339877 110340147 110339877 ID=MsG0680035664.01.T01:exon:8843;Parent=MsG0680035664.01.T01
Chr6 exon 110342482 110342519 110342482 ID=MsG0680035664.01.T01:exon:8842;Parent=MsG0680035664.01.T01
Chr6 exon 110342625 110343033 110342625 ID=MsG0680035664.01.T01:exon:8841;Parent=MsG0680035664.01.T01
Chr6 five_prime_UTR 110342958 110343033 110342958 ID=MsG0680035664.01.T01:five_prime_utr;Parent=MsG0680035664.01.T01
Chr6 CDS 110342625 110342957 110342625 ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6 CDS 110342482 110342519 110342482 ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6 CDS 110339877 110340147 110339877 ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6 CDS 110339477 110339760 110339477 ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6 CDS 110338487 110338916 110338487 ID=MsG0680035664.01.T01:cds;Parent=MsG0680035664.01.T01
Chr6 three_prime_UTR 110338186 110338486 110338186 ID=MsG0680035664.01.T01:three_prime_utr;Parent=MsG0680035664.01.T01
Gene Sequence

>MsG0680035664.01.T01

ATGGTGTTAACTTCAATTTCATCAATATCTTCACCTTCATCATCATCATCTTCATTCTTCTCTGATTCACCATCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGTTTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCGACTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAGACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTTTTCAGGTTGATTTGATTTCAACAATTCATATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGCTTATTTTCTTTTGCAAAAGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCGATTCCGGAAGATCTTGATCCATGGAGATCCAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCGGAAATAGAGGCGTTGTCAAGGCTTGATGTAAGTGCTGCTATGAAGGTCTTCCTTGCAAAGAGACTAACATCCGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATCGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAAAAGAGCAATGGACAAGGGACAAAATAAGATTGCCATACTTTATGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCCAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>MsG0680035664.01.T01

MVLTSISSISSPSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSTQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFFQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLKRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*