AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040118.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040118.01.T01 MTR_7g084760 96.739 276 4 1 10 280 18 293 0.0 559
MsG0780040118.01.T01 MTR_7g084770 96.727 275 4 1 11 280 19 293 0.0 558
MsG0780040118.01.T01 MTR_7g084750 84.752 282 37 2 4 280 13 293 0.0 513
MsG0780040118.01.T01 MTR_6g033055 83.273 275 41 1 11 280 19 293 7.28e-177 489
MsG0780040118.01.T01 MTR_6g033085 82.909 275 42 1 11 280 19 293 9.27e-177 489
MsG0780040118.01.T01 MTR_4g097700 52.918 257 114 2 24 274 69 324 3.28e-97 289
MsG0780040118.01.T01 MTR_4g097640 52.918 257 114 2 24 274 32 287 5.05e-97 287
MsG0780040118.01.T01 MTR_4g097670 52.918 257 114 2 24 274 32 287 5.05e-97 287
MsG0780040118.01.T01 MTR_2g089140 51.128 266 115 4 24 276 25 288 7.38e-96 284
MsG0780040118.01.T01 MTR_3g084630 52.330 279 113 4 6 278 17 281 1.19e-95 283
MsG0780040118.01.T01 MTR_3g084620 52.330 279 113 4 6 278 17 281 1.65e-95 283
MsG0780040118.01.T01 MTR_4g128410 55.000 260 106 4 24 275 25 281 5.30e-95 281
MsG0780040118.01.T01 MTR_4g045853 50.758 264 115 4 24 274 27 288 3.50e-94 280
MsG0780040118.01.T01 MTR_8g081040 51.064 282 119 5 1 276 15 283 4.49e-94 279
MsG0780040118.01.T01 MTR_7g093530 54.440 259 107 4 24 274 24 279 6.39e-91 271
MsG0780040118.01.T01 MTR_4g128580 53.409 264 106 4 24 274 26 285 3.38e-90 270
MsG0780040118.01.T01 MTR_1g105900 46.975 281 133 4 1 274 20 291 6.67e-89 266
MsG0780040118.01.T01 MTR_4g128570 52.918 257 100 4 24 274 31 272 2.65e-88 264
MsG0780040118.01.T01 MTR_6g088320 47.348 264 128 5 20 274 22 283 9.64e-88 263
MsG0780040118.01.T01 MTR_4g126920 51.341 261 113 4 24 274 25 281 1.92e-87 262
MsG0780040118.01.T01 MTR_8g102220 48.029 279 113 5 6 278 18 270 1.61e-86 259
MsG0780040118.01.T01 MTR_1g105495 49.808 261 122 2 24 275 35 295 4.14e-86 259
MsG0780040118.01.T01 MTR_2g038860 50.189 265 114 4 24 274 26 286 2.49e-84 254
MsG0780040118.01.T01 MTR_2g038705 50.189 265 114 4 24 274 26 286 2.49e-84 254
MsG0780040118.01.T01 MTR_8g102910 47.368 266 125 6 20 274 18 279 5.31e-84 253
MsG0780040118.01.T01 MTR_4g128400 49.430 263 122 4 22 274 22 283 1.57e-83 253
MsG0780040118.01.T01 MTR_2g089140 52.444 225 94 3 65 276 1 225 1.59e-83 250
MsG0780040118.01.T01 MTR_8g013055 46.718 259 132 2 21 274 28 285 5.58e-82 248
MsG0780040118.01.T01 MTR_4g128590 49.609 256 103 4 31 276 38 277 1.08e-77 237
MsG0780040118.01.T01 MTR_7g056090 43.478 276 143 5 6 275 14 282 2.04e-74 229
MsG0780040118.01.T01 MTR_3g089540 45.565 248 117 4 43 280 49 288 8.35e-74 228
MsG0780040118.01.T01 MTR_5g091730 46.888 241 116 3 42 276 46 280 9.03e-74 228
MsG0780040118.01.T01 MTR_2g049030 43.462 260 133 9 21 275 27 277 7.31e-66 207
MsG0780040118.01.T01 MTR_2g049130 42.629 251 132 7 21 264 26 271 1.13e-61 196
MsG0780040118.01.T01 MTR_5g029100 36.194 268 154 6 22 274 40 305 3.57e-55 182
MsG0780040118.01.T01 MTR_8g064180 33.000 300 175 6 1 275 13 311 3.63e-55 181
MsG0780040118.01.T01 MTR_4g057450 36.996 273 150 7 15 274 41 304 3.76e-55 180
MsG0780040118.01.T01 MTR_2g095800 36.861 274 150 8 15 274 45 309 2.20e-53 176
MsG0780040118.01.T01 MTR_7g102260 36.331 278 144 8 23 274 21 291 1.42e-52 173
MsG0780040118.01.T01 MTR_1g033420 35.294 289 171 5 1 277 10 294 2.73e-52 174
MsG0780040118.01.T01 MTR_1g063020 36.727 275 148 9 15 274 31 294 1.31e-51 171
MsG0780040118.01.T01 MTR_8g090100 34.944 269 153 6 22 274 19 281 2.36e-51 171
MsG0780040118.01.T01 MTR_5g029100 36.100 241 137 6 49 274 36 274 4.03e-49 165
MsG0780040118.01.T01 MTR_8g479340 34.715 193 65 3 83 274 3 135 2.50e-28 106
MsG0780040118.01.T01 MTR_8g032640 32.759 174 104 5 46 212 33 200 3.12e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040118.01.T01 AT5G13870 79.078 282 54 1 4 280 12 293 4.17e-175 485
MsG0780040118.01.T01 AT5G13870 79.078 282 54 1 4 280 12 293 4.17e-175 485
MsG0780040118.01.T01 AT5G13870 79.078 282 54 1 4 280 12 293 4.17e-175 485
MsG0780040118.01.T01 AT2G06850 77.061 279 59 1 6 279 17 295 4.62e-169 469
MsG0780040118.01.T01 AT2G06850 78.788 231 44 1 54 279 5 235 5.30e-141 396
MsG0780040118.01.T01 AT3G23730 54.545 264 111 3 24 278 27 290 7.36e-100 294
MsG0780040118.01.T01 AT4G14130 56.250 256 102 4 31 278 35 288 9.64e-98 289
MsG0780040118.01.T01 AT5G65730 51.938 258 117 3 24 275 35 291 3.81e-97 287
MsG0780040118.01.T01 AT4G03210 51.515 264 119 3 24 280 29 290 2.06e-95 283
MsG0780040118.01.T01 AT4G37800 49.451 273 131 2 9 275 19 290 8.06e-95 281
MsG0780040118.01.T01 AT5G57560 52.809 267 110 4 20 274 19 281 3.73e-92 274
MsG0780040118.01.T01 AT5G57550 50.719 278 119 5 5 275 17 283 2.77e-91 272
MsG0780040118.01.T01 AT4G30270 49.643 280 120 4 1 274 1 265 7.26e-89 265
MsG0780040118.01.T01 AT5G57530 51.953 256 110 5 31 277 34 285 2.22e-88 265
MsG0780040118.01.T01 AT5G57540 50.951 263 116 5 24 277 26 284 3.75e-88 264
MsG0780040118.01.T01 AT4G25810 49.123 285 130 5 1 274 3 283 1.28e-87 263
MsG0780040118.01.T01 AT4G13090 48.727 275 131 4 9 275 17 289 1.83e-87 263
MsG0780040118.01.T01 AT4G03210 53.247 231 101 2 57 280 32 262 2.06e-87 261
MsG0780040118.01.T01 AT1G11545 48.252 286 133 5 1 275 19 300 4.84e-87 262
MsG0780040118.01.T01 AT5G48070 52.500 240 103 4 41 274 47 281 2.14e-84 254
MsG0780040118.01.T01 AT2G14620 45.390 282 146 4 1 274 13 294 1.35e-83 253
MsG0780040118.01.T01 AT4G28850 44.964 278 141 5 11 278 16 291 1.90e-82 250
MsG0780040118.01.T01 AT2G18800 46.324 272 122 5 24 274 28 296 3.40e-81 247
MsG0780040118.01.T01 AT4G25820 49.606 254 115 4 31 275 37 286 2.77e-80 244
MsG0780040118.01.T01 AT3G25050 45.594 261 130 5 22 274 33 289 1.98e-79 242
MsG0780040118.01.T01 AT4G13080 44.788 259 135 4 22 275 37 292 2.19e-79 242
MsG0780040118.01.T01 AT4G30290 52.212 226 97 4 55 274 56 276 1.38e-77 237
MsG0780040118.01.T01 AT1G65310 52.655 226 96 4 55 274 61 281 9.58e-77 235
MsG0780040118.01.T01 AT2G14620 47.899 238 117 3 44 274 7 244 1.20e-76 234
MsG0780040118.01.T01 AT1G65310 52.655 226 96 4 55 274 83 303 1.20e-76 236
MsG0780040118.01.T01 AT4G30280 51.770 226 98 4 55 274 61 281 2.03e-76 234
MsG0780040118.01.T01 AT2G14620 50.228 219 102 3 63 274 15 233 1.74e-74 228
MsG0780040118.01.T01 AT3G44990 40.293 273 141 7 15 274 30 293 7.51e-58 187
MsG0780040118.01.T01 AT1G32170 38.589 241 135 5 46 274 54 293 3.04e-54 179
MsG0780040118.01.T01 AT3G48580 38.372 258 138 6 22 274 32 273 4.17e-53 174
MsG0780040118.01.T01 AT1G14720 34.532 278 170 4 7 274 15 290 2.13e-52 174
MsG0780040118.01.T01 AT2G36870 39.431 246 129 6 44 276 61 299 3.37e-52 172
MsG0780040118.01.T01 AT4G18990 37.154 253 135 5 45 274 61 312 3.46e-50 169
MsG0780040118.01.T01 AT2G01850 36.364 242 143 3 43 274 50 290 2.08e-48 164
MsG0780040118.01.T01 AT1G10550 34.263 251 145 6 43 274 60 309 3.50e-48 162
MsG0780040118.01.T01 AT3G48580 37.611 226 121 5 54 274 4 214 2.27e-45 152
MsG0780040118.01.T01 AT4G18990 36.916 214 115 4 80 274 26 238 5.07e-43 148
MsG0780040118.01.T01 AT3G48580 33.333 258 131 7 22 274 32 253 9.76e-38 134
MsG0780040118.01.T01 AT2G36870 43.220 118 54 3 44 148 61 178 5.70e-24 95.9

Find 62 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGATATACAACAGTTTA+TGG 0.169467 7:+73239038 MsG0780040118.01.T01:CDS
AAGAACAAAGGATCTTTCTT+TGG 0.288385 7:+73238778 MsG0780040118.01.T01:CDS
TTCACAGATACTCCATTCTA+TGG 0.293190 7:+73238820 MsG0780040118.01.T01:CDS
ATCAGTGCAATAGTTGTAAA+TGG 0.324527 7:-73239281 None:intergenic
ATCTTCATTGGTTGGTCAAA+TGG 0.328683 7:-73239022 None:intergenic
GCATCAAGATCACGAAATTC+AGG 0.366582 7:-73239217 None:intergenic
AAACTGTTGTATATCTTCAT+TGG 0.377706 7:-73239034 None:intergenic
CTGCCAAACGGTACATCAAC+TGG 0.381488 7:-73238140 None:intergenic
TCCAAAGGTTCATACTTGTT+TGG 0.384057 7:+73238495 MsG0780040118.01.T01:CDS
TACAAAGGTTTCCACATTGA+TGG 0.385031 7:+73239133 MsG0780040118.01.T01:CDS
GCCTGCTATGAATGGTGCTT+TGG 0.386418 7:-73239110 None:intergenic
GATCATATCAAATACTTCAA+TGG 0.398017 7:+73238188 MsG0780040118.01.T01:CDS
GTTTATGGAATGCAGATGAT+TGG 0.401396 7:+73239053 MsG0780040118.01.T01:CDS
ACCAAACAAGTATGAACCTT+TGG 0.401617 7:-73238496 None:intergenic
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7:-73238732 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7:+73238705 MsG0780040118.01.T01:CDS
CTGGTACATGTTCCATAGAA+TGG 0.433083 7:-73238832 None:intergenic
CAAGTAGTACTTACACAATC+TGG 0.439811 7:-73238851 None:intergenic
TCTTCATTGGTTGGTCAAAT+GGG 0.444373 7:-73239021 None:intergenic
TTACAAACAAATGTGTTCAC+TGG 0.454841 7:+73238741 MsG0780040118.01.T01:CDS
CTCAATGGCGTAGACTAAGA+TGG 0.467350 7:+73239242 MsG0780040118.01.T01:CDS
TTTATGGAATGCAGATGATT+GGG 0.473254 7:+73239054 MsG0780040118.01.T01:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7:+73239227 MsG0780040118.01.T01:CDS
TGTTGTATATCTTCATTGGT+TGG 0.483857 7:-73239030 None:intergenic
TTTCAGTATGAACATTAAGA+TGG 0.493779 7:+73238521 MsG0780040118.01.T01:CDS
AAGCCAGTTGATGTACCGTT+TGG 0.494859 7:+73238137 MsG0780040118.01.T01:CDS
TTTCTCTAATCCACCTCTTG+TGG 0.505041 7:-73239077 None:intergenic
ATGGTCCCTGGTGATTCAGC+TGG 0.509324 7:+73238540 MsG0780040118.01.T01:CDS
TTGCATTCTGGTGGAACTTG+AGG 0.515049 7:-73239316 None:intergenic
GCAGAAACTATTACCCCACT+TGG 0.516801 7:+73238159 MsG0780040118.01.T01:CDS
TGTACTTATCAAGATGAAGT+TGG 0.517285 7:-73238223 None:intergenic
GGGTAATAGTTTCTGCCAAA+CGG 0.530859 7:-73238152 None:intergenic
GGTACATCAACTGGCTTACG+TGG 0.544706 7:-73238131 None:intergenic
CCTTTGTAGCCTGCTATGAA+TGG 0.547075 7:-73239118 None:intergenic
CAAACAAATGTGTTCACTGG+TGG 0.551578 7:+73238744 MsG0780040118.01.T01:CDS
GATGATTGGGCCACAAGAGG+TGG 0.552403 7:+73239067 MsG0780040118.01.T01:CDS
TCCAAAGCACCATTCATAGC+AGG 0.568617 7:+73239109 MsG0780040118.01.T01:CDS
CCATTCATAGCAGGCTACAA+AGG 0.570384 7:+73239118 MsG0780040118.01.T01:CDS
ATGAACATTAAGATGGTCCC+TGG 0.574606 7:+73238528 MsG0780040118.01.T01:CDS
CAGAAACTATTACCCCACTT+GGG 0.575217 7:+73238160 MsG0780040118.01.T01:CDS
CAACACAAGGTAAAAGATGG+TGG 0.580512 7:+73239188 MsG0780040118.01.T01:CDS
TCAATGGCGTAGACTAAGAT+GGG 0.582539 7:+73239243 MsG0780040118.01.T01:CDS
GTGCAACACAAGGTAAAAGA+TGG 0.584463 7:+73239185 MsG0780040118.01.T01:CDS
CTTCATCTTGATAAGTACAC+TGG 0.589751 7:+73238227 MsG0780040118.01.T01:CDS
GTGGATTAGAGAAAACAGAT+TGG 0.595136 7:+73239086 MsG0780040118.01.T01:CDS
CGATGAACATTTAAATGTCA+CGG 0.595421 7:-73239345 None:intergenic
GCAGATGATTGGGCCACAAG+AGG 0.605501 7:+73239064 MsG0780040118.01.T01:CDS
TACATCAACTGGCTTACGTG+GGG 0.605678 7:-73238129 None:intergenic
AATGTGTTCACTGGTGGACA+AGG 0.617308 7:+73238750 MsG0780040118.01.T01:CDS
ACTGTTCCAGCTGAATCACC+AGG 0.622053 7:-73238546 None:intergenic
GTACATCAACTGGCTTACGT+GGG 0.622119 7:-73238130 None:intergenic
CATATCAAATACTTCAATGG+TGG 0.624848 7:+73238191 MsG0780040118.01.T01:CDS
GCAAAGTTCTGTGCAACACA+AGG 0.625558 7:+73239175 MsG0780040118.01.T01:CDS
AACACAAGGTAAAAGATGGT+GGG 0.632388 7:+73239189 MsG0780040118.01.T01:CDS
ATATGATCAAAAGCCCAAGT+GGG 0.644752 7:-73238173 None:intergenic
GATATGATCAAAAGCCCAAG+TGG 0.646471 7:-73238174 None:intergenic
GACAAGGTAACAAAGAACAA+AGG 0.658573 7:+73238766 MsG0780040118.01.T01:CDS
ACAGAACTTTGCATTAACAG+AGG 0.661986 7:-73239164 None:intergenic
ACATCAACTGGCTTACGTGG+GGG 0.674719 7:-73238128 None:intergenic
TATGATCAAAAGCCCAAGTG+GGG 0.682880 7:-73238172 None:intergenic
AGGATTCACAACCATCAATG+TGG 0.698159 7:-73239144 None:intergenic
CTGTTCCAGCTGAATCACCA+GGG 0.721487 7:-73238545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTACTCAAATT+TGG - Chr7:73238911-73238930 None:intergenic 10.0%
!!! AATTTTTTTGAAACTATGAT+TGG + Chr7:73238928-73238947 MsG0780040118.01.T01:intron 15.0%
!!! TGAAAAAACTTTAATTTGTT+AGG - Chr7:73238592-73238611 None:intergenic 15.0%
!! ACATTTGTTTGTAAAATGTA+AGG - Chr7:73238735-73238754 None:intergenic 20.0%
!!! TTTCTAACTACTTTTTTAAC+AGG + Chr7:73238459-73238478 MsG0780040118.01.T01:intron 20.0%
! AAACTGTTGTATATCTTCAT+TGG - Chr7:73239037-73239056 None:intergenic 25.0%
! GATCATATCAAATACTTCAA+TGG + Chr7:73238188-73238207 MsG0780040118.01.T01:CDS 25.0%
! TGAAGATATACAACAGTTTA+TGG + Chr7:73239038-73239057 MsG0780040118.01.T01:CDS 25.0%
! TTTCAGTATGAACATTAAGA+TGG + Chr7:73238521-73238540 MsG0780040118.01.T01:CDS 25.0%
!! TAGTACGAGTTTAAAACTAA+GGG - Chr7:73238428-73238447 None:intergenic 25.0%
!!! AAATAGATTTTGAGTTCTTG+GGG + Chr7:73238694-73238713 MsG0780040118.01.T01:CDS 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + Chr7:73238693-73238712 MsG0780040118.01.T01:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG + Chr7:73238692-73238711 MsG0780040118.01.T01:CDS 25.0%
AAGAACAAAGGATCTTTCTT+TGG + Chr7:73238778-73238797 MsG0780040118.01.T01:CDS 30.0%
ATCAGTGCAATAGTTGTAAA+TGG - Chr7:73239284-73239303 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG + Chr7:73238191-73238210 MsG0780040118.01.T01:CDS 30.0%
TGTACTTATCAAGATGAAGT+TGG - Chr7:73238226-73238245 None:intergenic 30.0%
TGTTGTATATCTTCATTGGT+TGG - Chr7:73239033-73239052 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG + Chr7:73238741-73238760 MsG0780040118.01.T01:CDS 30.0%
TTTATGGAATGCAGATGATT+GGG + Chr7:73239054-73239073 MsG0780040118.01.T01:CDS 30.0%
! GTAGTACGAGTTTAAAACTA+AGG - Chr7:73238429-73238448 None:intergenic 30.0%
! TATCTGTGAAACTCTTTTGT+TGG - Chr7:73238810-73238829 None:intergenic 30.0%
! TGTGTCATTCAAAACTATTG+TGG + Chr7:73238884-73238903 MsG0780040118.01.T01:intron 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG + Chr7:73238465-73238484 MsG0780040118.01.T01:intron 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG + Chr7:73238946-73238965 MsG0780040118.01.T01:intron 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG - Chr7:73238980-73238999 None:intergenic 30.0%
AACACAAGGTAAAAGATGGT+GGG + Chr7:73239189-73239208 MsG0780040118.01.T01:CDS 35.0%
AACGCTTGTGTATAAGCTAT+AGG + Chr7:73238344-73238363 MsG0780040118.01.T01:intron 35.0%
ACAGAACTTTGCATTAACAG+AGG - Chr7:73239167-73239186 None:intergenic 35.0%
ACCAAACAAGTATGAACCTT+TGG - Chr7:73238499-73238518 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+GGG - Chr7:73238176-73238195 None:intergenic 35.0%
CAAGTAGTACTTACACAATC+TGG - Chr7:73238854-73238873 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG + Chr7:73238227-73238246 MsG0780040118.01.T01:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG + Chr7:73238766-73238785 MsG0780040118.01.T01:CDS 35.0%
GTTTATGGAATGCAGATGAT+TGG + Chr7:73239053-73239072 MsG0780040118.01.T01:CDS 35.0%
TACAAAGGTTTCCACATTGA+TGG + Chr7:73239133-73239152 MsG0780040118.01.T01:CDS 35.0%
TCCAAAGGTTCATACTTGTT+TGG + Chr7:73238495-73238514 MsG0780040118.01.T01:CDS 35.0%
TTCAAAAACAGCAAGGACTT+AGG + Chr7:73238989-73239008 MsG0780040118.01.T01:CDS 35.0%
TTCACAGATACTCCATTCTA+TGG + Chr7:73238820-73238839 MsG0780040118.01.T01:CDS 35.0%
! ATCTTCATTGGTTGGTCAAA+TGG - Chr7:73239025-73239044 None:intergenic 35.0%
! TCTTCATTGGTTGGTCAAAT+GGG - Chr7:73239024-73239043 None:intergenic 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG + Chr7:73238982-73239001 MsG0780040118.01.T01:CDS 35.0%
!! GTGGATTAGAGAAAACAGAT+TGG + Chr7:73239086-73239105 MsG0780040118.01.T01:CDS 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG + Chr7:73238274-73238293 MsG0780040118.01.T01:intron 35.0%
AGGATTCACAACCATCAATG+TGG - Chr7:73239147-73239166 None:intergenic 40.0%
ATGAACATTAAGATGGTCCC+TGG + Chr7:73238528-73238547 MsG0780040118.01.T01:CDS 40.0%
CAAACAAATGTGTTCACTGG+TGG + Chr7:73238744-73238763 MsG0780040118.01.T01:CDS 40.0%
CAACACAAGGTAAAAGATGG+TGG + Chr7:73239188-73239207 MsG0780040118.01.T01:CDS 40.0%
CAGAAACTATTACCCCACTT+GGG + Chr7:73238160-73238179 MsG0780040118.01.T01:CDS 40.0%
CTGGTACATGTTCCATAGAA+TGG - Chr7:73238835-73238854 None:intergenic 40.0%
GATATGATCAAAAGCCCAAG+TGG - Chr7:73238177-73238196 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG - Chr7:73239220-73239239 None:intergenic 40.0%
GGGTAATAGTTTCTGCCAAA+CGG - Chr7:73238155-73238174 None:intergenic 40.0%
GTGCAACACAAGGTAAAAGA+TGG + Chr7:73239185-73239204 MsG0780040118.01.T01:CDS 40.0%
TATGATCAAAAGCCCAAGTG+GGG - Chr7:73238175-73238194 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG + Chr7:73239243-73239262 MsG0780040118.01.T01:CDS 40.0%
TTTCTCTAATCCACCTCTTG+TGG - Chr7:73239080-73239099 None:intergenic 40.0%
! CGAGTTTAAAACTAAGGGCA+TGG - Chr7:73238423-73238442 None:intergenic 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG + Chr7:73238480-73238499 MsG0780040118.01.T01:intron 40.0%
CCATTCATAGCAGGCTACAA+AGG + Chr7:73239118-73239137 MsG0780040118.01.T01:CDS 45.0%
CCTTTGTAGCCTGCTATGAA+TGG - Chr7:73239121-73239140 None:intergenic 45.0%
CTCAATGGCGTAGACTAAGA+TGG + Chr7:73239242-73239261 MsG0780040118.01.T01:CDS 45.0%
GCAAAGTTCTGTGCAACACA+AGG + Chr7:73239175-73239194 MsG0780040118.01.T01:CDS 45.0%
GCAGAAACTATTACCCCACT+TGG + Chr7:73238159-73238178 MsG0780040118.01.T01:CDS 45.0%
GTGATCTTGATGCTGCTCAA+TGG + Chr7:73239227-73239246 MsG0780040118.01.T01:CDS 45.0%
TTGCATTCTGGTGGAACTTG+AGG - Chr7:73239319-73239338 None:intergenic 45.0%
! AAGCCAGTTGATGTACCGTT+TGG + Chr7:73238137-73238156 MsG0780040118.01.T01:CDS 45.0%
! AATGTGTTCACTGGTGGACA+AGG + Chr7:73238750-73238769 MsG0780040118.01.T01:CDS 45.0%
! GTACATCAACTGGCTTACGT+GGG - Chr7:73238133-73238152 None:intergenic 45.0%
! TACATCAACTGGCTTACGTG+GGG - Chr7:73238132-73238151 None:intergenic 45.0%
! TCACGGTCTCTTTTGCATTC+TGG - Chr7:73239331-73239350 None:intergenic 45.0%
! TCCAAAGCACCATTCATAGC+AGG + Chr7:73239109-73239128 MsG0780040118.01.T01:CDS 45.0%
ACTGTTCCAGCTGAATCACC+AGG - Chr7:73238549-73238568 None:intergenic 50.0%
CTGCCAAACGGTACATCAAC+TGG - Chr7:73238143-73238162 None:intergenic 50.0%
CTGTTCCAGCTGAATCACCA+GGG - Chr7:73238548-73238567 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG + Chr7:73238705-73238724 MsG0780040118.01.T01:CDS 50.0%
GCCTGCTATGAATGGTGCTT+TGG - Chr7:73239113-73239132 None:intergenic 50.0%
! ACATCAACTGGCTTACGTGG+GGG - Chr7:73238131-73238150 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCTGG+TGG - Chr7:73239328-73239347 None:intergenic 50.0%
! GGTACATCAACTGGCTTACG+TGG - Chr7:73238134-73238153 None:intergenic 50.0%
ATGGTCCCTGGTGATTCAGC+TGG + Chr7:73238540-73238559 MsG0780040118.01.T01:CDS 55.0%
GATGATTGGGCCACAAGAGG+TGG + Chr7:73239067-73239086 MsG0780040118.01.T01:CDS 55.0%
GCAGATGATTGGGCCACAAG+AGG + Chr7:73239064-73239083 MsG0780040118.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 73238086 73239357 73238086 ID=MsG0780040118.01;Name=MsG0780040118.01
Chr7 mRNA 73238086 73239357 73238086 ID=MsG0780040118.01.T01;Parent=MsG0780040118.01;Name=MsG0780040118.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|280
Chr7 exon 73238086 73238248 73238086 ID=MsG0780040118.01.T01:exon:13189;Parent=MsG0780040118.01.T01
Chr7 exon 73238481 73238566 73238481 ID=MsG0780040118.01.T01:exon:13190;Parent=MsG0780040118.01.T01
Chr7 exon 73238666 73238859 73238666 ID=MsG0780040118.01.T01:exon:13191;Parent=MsG0780040118.01.T01
Chr7 exon 73238958 73239357 73238958 ID=MsG0780040118.01.T01:exon:13192;Parent=MsG0780040118.01.T01
Chr7 CDS 73238086 73238248 73238086 ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7 CDS 73238481 73238566 73238481 ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7 CDS 73238666 73238859 73238666 ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7 CDS 73238958 73239357 73238958 ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Gene Sequence

>MsG0780040118.01.T01

ATGTTTGATTTTAGCATCACTAGTCTCTTTTCATTATGTGCTCCCCCACGTAAGCCAGTTGATGTACCGTTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCAGAGATCCAACTTCATCTTGATAAGTACACTGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTCCCTGGTGATTCAGCTGGAACATTATCTTCACAAAATGCTGAGCATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTATTTTTTGTGGATGATGTTCCAATAAGAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAGATATACAACAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGATTAGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCAAAGTTCTGTGCAACACAAGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAGAAATACACCATTTACAACTATTGCACTGATAGAAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA

Protein sequence

>MsG0780040118.01.T01

MFDFSITSLFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI*