AlfalfaGEDB | MsG0780040118.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040118.01

KEGG: K08235
GO: GO:0004553 GO:0005618 GO:0005975 GO:0006073 GO:0010411 GO:0016762 GO:0042546 GO:0048046
PFAM: PF00722 PF06955

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040118.01.T01	XP_003624548.1	96.739	276	4	1	10	280	18	293	0	559

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040118.01.T01	Q8LNZ5	84.727	275	37	1	11	280	19	293	0	512

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040118.01.T01	Q2HRU6	96.739	276	4	1	10	280	18	293	0.0	559

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000551.01	MsG0780040118.01	0.807402	5.144213e-50	2.862632e-47
MsG0180003905.01	MsG0780040118.01	0.806186	9.293896e-50	5.012420e-47
MsG0180004027.01	MsG0780040118.01	0.820343	7.211778e-53	5.691320e-50
MsG0180004510.01	MsG0780040118.01	0.855295	6.943136e-62	1.595454e-58
MsG0180004652.01	MsG0780040118.01	0.814237	1.706952e-51	1.139125e-48
MsG0180005272.01	MsG0780040118.01	0.861241	1.177979e-63	3.310936e-60
MsG0180005569.01	MsG0780040118.01	0.807449	5.026601e-50	2.800634e-47
MsG0180005603.01	MsG0780040118.01	0.804485	2.112194e-49	1.090342e-46
MsG0180006076.01	MsG0780040118.01	-0.832578	8.729285e-56	9.797619e-53
MsG0180006182.01	MsG0780040118.01	0.871539	6.330111e-67	2.562743e-63

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PPI

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Gene1	Gene2	Type
MsG0880046024.01	MsG0780040118.01	PPI
MsG0880046024.01	MsG0780040118.01	PPI
MsG0880046025.01	MsG0780040118.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040118.01.T01	MTR_7g084760	96.739	276	4	1	10	280	18	293	0.0	559
MsG0780040118.01.T01	MTR_7g084770	96.727	275	4	1	11	280	19	293	0.0	558
MsG0780040118.01.T01	MTR_7g084750	84.752	282	37	2	4	280	13	293	0.0	513
MsG0780040118.01.T01	MTR_6g033055	83.273	275	41	1	11	280	19	293	7.28e-177	489
MsG0780040118.01.T01	MTR_6g033085	82.909	275	42	1	11	280	19	293	9.27e-177	489
MsG0780040118.01.T01	MTR_4g097700	52.918	257	114	2	24	274	69	324	3.28e-97	289
MsG0780040118.01.T01	MTR_4g097640	52.918	257	114	2	24	274	32	287	5.05e-97	287
MsG0780040118.01.T01	MTR_4g097670	52.918	257	114	2	24	274	32	287	5.05e-97	287
MsG0780040118.01.T01	MTR_2g089140	51.128	266	115	4	24	276	25	288	7.38e-96	284
MsG0780040118.01.T01	MTR_3g084630	52.330	279	113	4	6	278	17	281	1.19e-95	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040118.01.T01	AT5G13870	79.078	282	54	1	4	280	12	293	4.17e-175	485
MsG0780040118.01.T01	AT5G13870	79.078	282	54	1	4	280	12	293	4.17e-175	485
MsG0780040118.01.T01	AT5G13870	79.078	282	54	1	4	280	12	293	4.17e-175	485
MsG0780040118.01.T01	AT2G06850	77.061	279	59	1	6	279	17	295	4.62e-169	469
MsG0780040118.01.T01	AT2G06850	78.788	231	44	1	54	279	5	235	5.30e-141	396
MsG0780040118.01.T01	AT3G23730	54.545	264	111	3	24	278	27	290	7.36e-100	294
MsG0780040118.01.T01	AT4G14130	56.250	256	102	4	31	278	35	288	9.64e-98	289
MsG0780040118.01.T01	AT5G65730	51.938	258	117	3	24	275	35	291	3.81e-97	287
MsG0780040118.01.T01	AT4G03210	51.515	264	119	3	24	280	29	290	2.06e-95	283
MsG0780040118.01.T01	AT4G37800	49.451	273	131	2	9	275	19	290	8.06e-95	281

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Find 62 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTGTATATCTTCAT+TGG	0.377706	7:-73239034	None:intergenic
AACACAAGGTAAAAGATGGT+GGG	0.632388	7:+73239189	MsG0780040118.01.T01:CDS
AAGAACAAAGGATCTTTCTT+TGG	0.288385	7:+73238778	MsG0780040118.01.T01:CDS
AAGCCAGTTGATGTACCGTT+TGG	0.494859	7:+73238137	MsG0780040118.01.T01:CDS
AATGTGTTCACTGGTGGACA+AGG	0.617308	7:+73238750	MsG0780040118.01.T01:CDS
ACAGAACTTTGCATTAACAG+AGG	0.661986	7:-73239164	None:intergenic
ACATCAACTGGCTTACGTGG+GGG	0.674719	7:-73238128	None:intergenic
ACATTTGTTTGTAAAATGTA+AGG	0.414616	7:-73238732	None:intergenic
ACCAAACAAGTATGAACCTT+TGG	0.401617	7:-73238496	None:intergenic
ACTGTTCCAGCTGAATCACC+AGG	0.622053	7:-73238546	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACAAAGGATCTTTCTT+TGG	+	Chr7:73238778-73238797	MsG0780040118.01.T01:CDS	30.0%
ATCAGTGCAATAGTTGTAAA+TGG	-	Chr7:73239284-73239303	None:intergenic	30.0%
CATATCAAATACTTCAATGG+TGG	+	Chr7:73238191-73238210	MsG0780040118.01.T01:CDS	30.0%
TGTACTTATCAAGATGAAGT+TGG	-	Chr7:73238226-73238245	None:intergenic	30.0%
TGTTGTATATCTTCATTGGT+TGG	-	Chr7:73239033-73239052	None:intergenic	30.0%
TTACAAACAAATGTGTTCAC+TGG	+	Chr7:73238741-73238760	MsG0780040118.01.T01:CDS	30.0%
TTTATGGAATGCAGATGATT+GGG	+	Chr7:73239054-73239073	MsG0780040118.01.T01:CDS	30.0%
AACACAAGGTAAAAGATGGT+GGG	+	Chr7:73239189-73239208	MsG0780040118.01.T01:CDS	35.0%
AACGCTTGTGTATAAGCTAT+AGG	+	Chr7:73238344-73238363	MsG0780040118.01.T01:intron	35.0%
ACAGAACTTTGCATTAACAG+AGG	-	Chr7:73239167-73239186	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	73238086	73239357	73238086	ID=MsG0780040118.01;Name=MsG0780040118.01
Chr7	mRNA	73238086	73239357	73238086	ID=MsG0780040118.01.T01;Parent=MsG0780040118.01;Name=MsG0780040118.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|4\|0\|280
Chr7	exon	73238086	73238248	73238086	ID=MsG0780040118.01.T01:exon:13189;Parent=MsG0780040118.01.T01
Chr7	exon	73238481	73238566	73238481	ID=MsG0780040118.01.T01:exon:13190;Parent=MsG0780040118.01.T01
Chr7	exon	73238666	73238859	73238666	ID=MsG0780040118.01.T01:exon:13191;Parent=MsG0780040118.01.T01
Chr7	exon	73238958	73239357	73238958	ID=MsG0780040118.01.T01:exon:13192;Parent=MsG0780040118.01.T01
Chr7	CDS	73238086	73238248	73238086	ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7	CDS	73238481	73238566	73238481	ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7	CDS	73238666	73238859	73238666	ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01
Chr7	CDS	73238958	73239357	73238958	ID=MsG0780040118.01.T01:cds;Parent=MsG0780040118.01.T01

Gene Sequence

>MsG0780040118.01.T01

ATGTTTGATTTTAGCATCACTAGTCTCTTTTCATTATGTGCTCCCCCACGTAAGCCAGTTGATGTACCGTTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCAGAGATCCAACTTCATCTTGATAAGTACACTGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTCCCTGGTGATTCAGCTGGAACATTATCTTCACAAAATGCTGAGCATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTATTTTTTGTGGATGATGTTCCAATAAGAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAGATATACAACAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGATTAGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCAAAGTTCTGTGCAACACAAGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAGAAATACACCATTTACAACTATTGCACTGATAGAAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA

Protein sequence

>MsG0780040118.01.T01

MFDFSITSLFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI*