Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025385.01.T01 | XP_003612657.1 | 72.519 | 131 | 34 | 2 | 31 | 159 | 412 | 542 | 9.69E-51 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025385.01.T01 | G7K875 | 72.519 | 131 | 34 | 2 | 31 | 159 | 412 | 542 | 4.63e-51 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048150.01 | MsG0580025385.01 | 0.818706 | 1.704299e-52 | 1.285151e-49 |
| MsG0080048701.01 | MsG0580025385.01 | 0.822841 | 1.909062e-53 | 1.616329e-50 |
| MsG0080048781.01 | MsG0580025385.01 | 0.826842 | 2.173257e-54 | 2.061750e-51 |
| MsG0080048842.01 | MsG0580025385.01 | -0.816667 | 4.914117e-52 | 3.503959e-49 |
| MsG0080048948.01 | MsG0580025385.01 | -0.822705 | 2.053207e-53 | 1.731676e-50 |
| MsG0180000076.01 | MsG0580025385.01 | 0.870667 | 1.226821e-66 | 4.811007e-63 |
| MsG0180000360.01 | MsG0580025385.01 | 0.824430 | 8.105097e-54 | 7.177175e-51 |
| MsG0180000373.01 | MsG0580025385.01 | 0.821321 | 4.295595e-53 | 3.483367e-50 |
| MsG0180001272.01 | MsG0580025385.01 | 0.809073 | 2.265861e-50 | 1.317461e-47 |
| MsG0180002421.01 | MsG0580025385.01 | 0.807327 | 5.337386e-50 | 2.964298e-47 |
| MsG0180002984.01 | MsG0580025385.01 | 0.817722 | 2.846101e-52 | 2.088906e-49 |
| MsG0180003427.01 | MsG0580025385.01 | 0.820828 | 5.580052e-53 | 4.463366e-50 |
| MsG0180003796.01 | MsG0580025385.01 | 0.825483 | 4.574682e-54 | 4.174910e-51 |
| MsG0180004027.01 | MsG0580025385.01 | 0.849925 | 2.364161e-60 | 4.554106e-57 |
| MsG0180004126.01 | MsG0580025385.01 | 0.871122 | 8.692802e-67 | 3.465943e-63 |
| MsG0180004510.01 | MsG0580025385.01 | 0.864200 | 1.442956e-64 | 4.492590e-61 |
| MsG0180004559.01 | MsG0580025385.01 | 0.833792 | 4.351776e-56 | 5.065270e-53 |
| MsG0180005002.01 | MsG0580025385.01 | 0.804369 | 2.232449e-49 | 1.149048e-46 |
| MsG0180005667.01 | MsG0580025385.01 | 0.848141 | 7.404847e-60 | 1.345685e-56 |
| MsG0180005835.01 | MsG0580025385.01 | 0.853997 | 1.650296e-61 | 3.632679e-58 |
| MsG0180006026.01 | MsG0580025385.01 | 0.834126 | 3.588255e-56 | 4.218457e-53 |
| MsG0180006076.01 | MsG0580025385.01 | -0.812996 | 3.200221e-51 | 2.064964e-48 |
| MsG0180006182.01 | MsG0580025385.01 | 0.850919 | 1.243273e-60 | 2.474127e-57 |
| MsG0180006191.01 | MsG0580025385.01 | 0.803408 | 3.536216e-49 | 1.775639e-46 |
| MsG0280010868.01 | MsG0580025385.01 | 0.827514 | 1.500033e-54 | 1.451305e-51 |
| MsG0380012472.01 | MsG0580025385.01 | 0.847122 | 1.411841e-59 | 2.484438e-56 |
| MsG0380013041.01 | MsG0580025385.01 | 0.856493 | 3.099058e-62 | 7.411534e-59 |
| MsG0380014171.01 | MsG0580025385.01 | 0.814282 | 1.667953e-51 | 1.114475e-48 |
| MsG0380014754.01 | MsG0580025385.01 | 0.854892 | 9.093599e-62 | 2.061559e-58 |
| MsG0480018526.01 | MsG0580025385.01 | 0.803074 | 4.147118e-49 | 2.064491e-46 |
| MsG0480018567.01 | MsG0580025385.01 | 0.812651 | 3.808916e-51 | 2.435354e-48 |
| MsG0480018918.01 | MsG0580025385.01 | 0.804508 | 2.088452e-49 | 1.078714e-46 |
| MsG0480019247.01 | MsG0580025385.01 | -0.816188 | 6.288525e-52 | 4.425710e-49 |
| MsG0480019588.01 | MsG0580025385.01 | 0.847363 | 1.212355e-59 | 2.149681e-56 |
| MsG0480019635.01 | MsG0580025385.01 | 0.869186 | 3.739747e-66 | 1.390861e-62 |
| MsG0480020263.01 | MsG0580025385.01 | 0.849384 | 3.347162e-60 | 6.334396e-57 |
| MsG0480021156.01 | MsG0580025385.01 | 0.813357 | 2.667308e-51 | 1.738048e-48 |
| MsG0480021225.01 | MsG0580025385.01 | 0.803156 | 3.987664e-49 | 1.989463e-46 |
| MsG0480022167.01 | MsG0580025385.01 | 0.863822 | 1.892020e-64 | 5.813178e-61 |
| MsG0480022325.01 | MsG0580025385.01 | 0.839146 | 1.886558e-57 | 2.581903e-54 |
| MsG0480022407.01 | MsG0580025385.01 | 0.812733 | 3.654630e-51 | 2.341834e-48 |
| MsG0480023064.01 | MsG0580025385.01 | 0.832355 | 9.909101e-56 | 1.104850e-52 |
| MsG0480023195.01 | MsG0580025385.01 | 0.813137 | 2.980214e-51 | 1.930230e-48 |
| MsG0480023324.01 | MsG0580025385.01 | 0.889797 | 1.755516e-73 | 1.437404e-69 |
| MsG0480023450.01 | MsG0580025385.01 | 0.817976 | 2.493559e-52 | 1.842862e-49 |
| MsG0480023672.01 | MsG0580025385.01 | 0.814167 | 1.768016e-51 | 1.177628e-48 |
| MsG0480023944.01 | MsG0580025385.01 | 0.809034 | 2.310258e-50 | 1.341809e-47 |
| MsG0480024002.01 | MsG0580025385.01 | 0.802792 | 4.741247e-49 | 2.343666e-46 |
| MsG0580024388.01 | MsG0580025385.01 | 0.806011 | 1.011837e-49 | 5.432705e-47 |
| MsG0580024478.01 | MsG0580025385.01 | 0.854374 | 1.284794e-61 | 2.862952e-58 |
| MsG0580024954.01 | MsG0580025385.01 | 0.839236 | 1.788145e-57 | 2.454093e-54 |
| MsG0580025093.01 | MsG0580025385.01 | 0.862396 | 5.220736e-64 | 1.526656e-60 |
| MsG0580025153.01 | MsG0580025385.01 | -0.822363 | 2.465856e-53 | 2.059674e-50 |
| MsG0580025385.01 | MsG0580025464.01 | 0.864884 | 8.816455e-65 | 2.811540e-61 |
| MsG0580025385.01 | MsG0580025620.01 | 0.805239 | 1.469426e-49 | 7.734337e-47 |
| MsG0580025385.01 | MsG0580025766.01 | 0.817869 | 2.635997e-52 | 1.942484e-49 |
| MsG0580025385.01 | MsG0580025822.01 | 0.828649 | 7.996357e-55 | 7.997010e-52 |
| MsG0580025385.01 | MsG0580027131.01 | 0.803099 | 4.097549e-49 | 2.041153e-46 |
| MsG0580025385.01 | MsG0580028330.01 | 0.878839 | 2.029287e-69 | 1.075307e-65 |
| MsG0580025385.01 | MsG0580028516.01 | 0.809286 | 2.039556e-50 | 1.192669e-47 |
| MsG0580025385.01 | MsG0580028756.01 | 0.816615 | 5.047532e-52 | 3.593925e-49 |
| MsG0580025385.01 | MsG0580028927.01 | 0.804870 | 1.755492e-49 | 9.153598e-47 |
| MsG0580025385.01 | MsG0580029591.01 | 0.814629 | 1.397696e-51 | 9.427064e-49 |
| MsG0580025385.01 | MsG0580030179.01 | 0.840957 | 6.356791e-58 | 9.201500e-55 |
| MsG0580025385.01 | MsG0680031463.01 | 0.806084 | 9.768337e-50 | 5.254296e-47 |
| MsG0580025385.01 | MsG0680031616.01 | 0.846215 | 2.497707e-59 | 4.267718e-56 |
| MsG0580025385.01 | MsG0780037982.01 | -0.807253 | 5.533057e-50 | 3.067036e-47 |
| MsG0580025385.01 | MsG0780038393.01 | 0.821854 | 3.235396e-53 | 2.663434e-50 |
| MsG0580025385.01 | MsG0780038790.01 | 0.806860 | 6.699681e-50 | 3.676122e-47 |
| MsG0580025385.01 | MsG0780038810.01 | 0.853790 | 1.893548e-61 | 4.139476e-58 |
| MsG0580025385.01 | MsG0780038837.01 | 0.813388 | 2.625795e-51 | 1.712467e-48 |
| MsG0580025385.01 | MsG0780039303.01 | 0.816694 | 4.844943e-52 | 3.457097e-49 |
| MsG0580025385.01 | MsG0780039462.01 | -0.804628 | 1.971903e-49 | 1.021677e-46 |
| MsG0580025385.01 | MsG0780039861.01 | 0.818201 | 2.218266e-52 | 1.649615e-49 |
| MsG0580025385.01 | MsG0780040139.01 | 0.808619 | 2.832881e-50 | 1.627351e-47 |
| MsG0580025385.01 | MsG0780040266.01 | 0.808123 | 3.615434e-50 | 2.050145e-47 |
| MsG0580025385.01 | MsG0780040364.01 | 0.863490 | 2.397871e-64 | 7.281761e-61 |
| MsG0580025385.01 | MsG0780040482.01 | 0.831000 | 2.139026e-55 | 2.291289e-52 |
| MsG0580025385.01 | MsG0780040543.01 | 0.831546 | 1.570486e-55 | 1.709870e-52 |
| MsG0580025385.01 | MsG0780040564.01 | 0.871009 | 9.470281e-67 | 3.760540e-63 |
| MsG0580025385.01 | MsG0780041141.01 | 0.800184 | 1.623701e-48 | 7.511642e-46 |
| MsG0580025385.01 | MsG0780041143.01 | 0.824261 | 8.881704e-54 | 7.826966e-51 |
| MsG0580025385.01 | MsG0780041363.01 | 0.852830 | 3.567495e-61 | 7.552099e-58 |
| MsG0580025385.01 | MsG0880042046.01 | 0.826354 | 2.840948e-54 | 2.658005e-51 |
| MsG0580025385.01 | MsG0880042906.01 | 0.826815 | 2.205720e-54 | 2.090984e-51 |
| MsG0580025385.01 | MsG0880042927.01 | 0.821233 | 4.502318e-53 | 3.642109e-50 |
| MsG0580025385.01 | MsG0880043261.01 | 0.814413 | 1.560424e-51 | 1.046390e-48 |
| MsG0580025385.01 | MsG0880043297.01 | 0.835673 | 1.463754e-56 | 1.802571e-53 |
| MsG0580025385.01 | MsG0880043431.01 | 0.817422 | 3.325182e-52 | 2.420634e-49 |
| MsG0580025385.01 | MsG0880043983.01 | 0.822095 | 2.845940e-53 | 2.358705e-50 |
| MsG0580025385.01 | MsG0880044984.01 | 0.813987 | 1.937569e-51 | 1.284255e-48 |
| MsG0580025385.01 | MsG0880045584.01 | 0.809281 | 2.044697e-50 | 1.195514e-47 |
| MsG0580025385.01 | MsG0880045963.01 | 0.821863 | 3.220192e-53 | 2.651566e-50 |
| MsG0580025385.01 | MsG0880045989.01 | 0.843036 | 1.793127e-58 | 2.769870e-55 |
| MsG0580025385.01 | MsG0880046165.01 | 0.813167 | 2.935732e-51 | 1.902910e-48 |
| MsG0580025385.01 | MsG0880047223.01 | 0.844534 | 7.123773e-59 | 1.153586e-55 |
| MsG0580025385.01 | MsG0880047466.01 | 0.856447 | 3.198274e-62 | 7.636240e-59 |
| MsG0380015548.01 | MsG0580025385.01 | 0.814216 | 1.725142e-51 | 1.150555e-48 |
| MsG0380015641.01 | MsG0580025385.01 | 0.826929 | 2.071322e-54 | 1.970234e-51 |
| MsG0380015816.01 | MsG0580025385.01 | 0.803370 | 3.601783e-49 | 1.806722e-46 |
| MsG0380015871.01 | MsG0580025385.01 | 0.828058 | 1.110345e-54 | 1.091509e-51 |
| MsG0380016110.01 | MsG0580025385.01 | 0.810136 | 1.339343e-50 | 8.009579e-48 |
| MsG0380016449.01 | MsG0580025385.01 | 0.830745 | 2.470120e-55 | 2.626065e-52 |
| MsG0380017024.01 | MsG0580025385.01 | 0.808820 | 2.567170e-50 | 1.482548e-47 |
| MsG0380017091.01 | MsG0580025385.01 | 0.800309 | 1.531332e-48 | 7.107295e-46 |
| MsG0380017164.01 | MsG0580025385.01 | 0.801452 | 8.945571e-49 | 4.273583e-46 |
| MsG0380017231.01 | MsG0580025385.01 | 0.841188 | 5.529795e-58 | 8.061680e-55 |
| MsG0380017239.01 | MsG0580025385.01 | 0.805445 | 1.330281e-49 | 7.039144e-47 |
| MsG0380017240.01 | MsG0580025385.01 | 0.863471 | 2.431607e-64 | 7.378869e-61 |
| MsG0380017361.01 | MsG0580025385.01 | 0.806159 | 9.418297e-50 | 5.075889e-47 |
| MsG0380017997.01 | MsG0580025385.01 | 0.851292 | 9.757408e-61 | 1.965730e-57 |
| MsG0380018007.01 | MsG0580025385.01 | 0.857510 | 1.554319e-62 | 3.845607e-59 |
| MsG0280006563.01 | MsG0580025385.01 | 0.802725 | 4.895483e-49 | 2.415755e-46 |
| MsG0280006884.01 | MsG0580025385.01 | 0.837414 | 5.272293e-57 | 6.843110e-54 |
| MsG0280007419.01 | MsG0580025385.01 | 0.872361 | 3.375223e-67 | 1.408472e-63 |
| MsG0280007761.01 | MsG0580025385.01 | 0.807693 | 4.462127e-50 | 2.501775e-47 |
| MsG0280007983.01 | MsG0580025385.01 | 0.848207 | 7.101558e-60 | 1.293407e-56 |
| MsG0280008407.01 | MsG0580025385.01 | 0.861422 | 1.037681e-63 | 2.934930e-60 |
| MsG0280008679.01 | MsG0580025385.01 | 0.807500 | 4.904382e-50 | 2.736144e-47 |
| MsG0280009241.01 | MsG0580025385.01 | 0.871117 | 8.721860e-67 | 3.477060e-63 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025385.01.T01 | MTR_5g027460 | 72.519 | 131 | 34 | 2 | 31 | 159 | 412 | 542 | 1.17e-54 | 181 |
| MsG0580025385.01.T01 | MTR_5g027460 | 100.000 | 33 | 0 | 0 | 1 | 33 | 227 | 259 | 4.89e-13 | 66.2 |
| MsG0580025385.01.T01 | MTR_8g071050 | 42.222 | 135 | 66 | 4 | 27 | 159 | 376 | 500 | 2.98e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCTCTCCGGTGGTTTC+TGG | 0.133359 | 5:+17833140 | MsG0580025385.01.T01:CDS |
| GGAATTGTTGTGTTGCTATT+TGG | 0.217379 | 5:+17833060 | MsG0580025385.01.T01:CDS |
| AAGAAGGTGCTTTCTCTATA+TGG | 0.334773 | 5:+17832928 | MsG0580025385.01.T01:CDS |
| TGCTTTCTTGAGAGTTGTTC+CGG | 0.346386 | 5:-17832259 | None:intergenic |
| ACGGACACAGTCACTGGAAA+TGG | 0.347797 | 5:+17832814 | MsG0580025385.01.T01:CDS |
| GCTGGTGGTGCTGTTGCTGC+AGG | 0.363219 | 5:+17833095 | MsG0580025385.01.T01:CDS |
| TCACTTCATGCTACTGCTGC+TGG | 0.374544 | 5:+17832318 | MsG0580025385.01.T01:CDS |
| CAGTTGGGCCAGGACGGATT+AGG | 0.378121 | 5:+17833000 | MsG0580025385.01.T01:CDS |
| TCAGGGTTTGGATTCTATTA+CGG | 0.378827 | 5:+17832795 | MsG0580025385.01.T01:intron |
| GAGCTGCAGGTTTGTGTGTC+GGG | 0.405501 | 5:+17832964 | MsG0580025385.01.T01:CDS |
| CGGACACAGTCACTGGAAAT+GGG | 0.411485 | 5:+17832815 | MsG0580025385.01.T01:CDS |
| CTTTCTCTATATGGTATGCT+TGG | 0.415039 | 5:+17832937 | MsG0580025385.01.T01:CDS |
| GGGTTCACAGTTGGTTCAGT+TGG | 0.419215 | 5:+17832984 | MsG0580025385.01.T01:CDS |
| CTTGAGAGTTGTTCCGGTGA+AGG | 0.430405 | 5:-17832253 | None:intergenic |
| CTCATGATCCGCGCCTTCAC+CGG | 0.455419 | 5:+17832240 | None:intergenic |
| GGTTCACAGTTGGTTCAGTT+GGG | 0.464283 | 5:+17832985 | MsG0580025385.01.T01:CDS |
| TCTATTACGGACACAGTCAC+TGG | 0.495368 | 5:+17832808 | MsG0580025385.01.T01:CDS |
| ATTTGGAAACTCAGTGATGC+TGG | 0.502013 | 5:+17833077 | MsG0580025385.01.T01:CDS |
| GGGTTAGATTTGTGCTCCAT+CGG | 0.505069 | 5:+17832904 | MsG0580025385.01.T01:CDS |
| CTGCCATTCAGAGCACATCC+AGG | 0.506053 | 5:+17832855 | MsG0580025385.01.T01:CDS |
| CCAAAAGCGTGCAAAATCCC+TGG | 0.514306 | 5:-17832873 | None:intergenic |
| ACAGTTGGTTCAGTTGGGCC+AGG | 0.514316 | 5:+17832990 | MsG0580025385.01.T01:CDS |
| AGTAGCATGAAGTGAGAGGC+GGG | 0.517268 | 5:-17832310 | None:intergenic |
| GGACGGATTAGGACTTCGTT+CGG | 0.527260 | 5:+17833011 | MsG0580025385.01.T01:CDS |
| TTGTGTGTCGGGTTCACAGT+TGG | 0.527867 | 5:+17832975 | MsG0580025385.01.T01:CDS |
| CTGGTGGTGCTGTTGCTGCA+GGG | 0.528747 | 5:+17833096 | MsG0580025385.01.T01:CDS |
| AGAGCTGCAGGTTTGTGTGT+CGG | 0.529302 | 5:+17832963 | MsG0580025385.01.T01:CDS |
| ATCCCTGGATGTGCTCTGAA+TGG | 0.535476 | 5:-17832858 | None:intergenic |
| TTTGTGCTCCATCGGAAAGA+AGG | 0.540712 | 5:+17832912 | MsG0580025385.01.T01:CDS |
| AGAAAGCACCTTCTTTCCGA+TGG | 0.541888 | 5:-17832920 | None:intergenic |
| CGATAATGAGAGAAGCTCTC+CGG | 0.546258 | 5:+17833130 | MsG0580025385.01.T01:CDS |
| AACGAAGTCCTAATCCGTCC+TGG | 0.555456 | 5:-17833008 | None:intergenic |
| ACAACAATTCCAGCAATAGC+AGG | 0.576506 | 5:-17833048 | None:intergenic |
| TATGCTTGGATGAGAGCTGC+AGG | 0.590623 | 5:+17832951 | MsG0580025385.01.T01:CDS |
| TTGGTTCAGTTGGGCCAGGA+CGG | 0.593555 | 5:+17832994 | MsG0580025385.01.T01:CDS |
| CAGCAGTAGCATGAAGTGAG+AGG | 0.596792 | 5:-17832314 | None:intergenic |
| TGCCATTCAGAGCACATCCA+GGG | 0.607697 | 5:+17832856 | MsG0580025385.01.T01:CDS |
| CAGTAGCATGAAGTGAGAGG+CGG | 0.616592 | 5:-17832311 | None:intergenic |
| GAATCTAAACCAGAAACCAC+CGG | 0.628298 | 5:-17833149 | None:intergenic |
| GAGTTGTTCCGGTGAAGGCG+CGG | 0.634731 | 5:-17832248 | None:intergenic |
| GGACACAGTCACTGGAAATG+GGG | 0.658492 | 5:+17832816 | MsG0580025385.01.T01:CDS |
| TAATGAGAGAAGCTCTCCGG+TGG | 0.661539 | 5:+17833133 | MsG0580025385.01.T01:CDS |
| TGGAAACTCAGTGATGCTGG+TGG | 0.737554 | 5:+17833080 | MsG0580025385.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATATTTGAAGATGGAAAAA+GGG | - | Chr5:17832532-17832551 | None:intergenic | 25.0% |
| GGATATTTGAAGATGGAAAA+AGG | - | Chr5:17832533-17832552 | None:intergenic | 30.0% | |
| TCGATTTCAGTGGTTTAATT+TGG | + | Chr5:17832434-17832453 | MsG0580025385.01.T01:intron | 30.0% | |
| TTCAAATATCCTCATGCTAT+TGG | + | Chr5:17832542-17832561 | MsG0580025385.01.T01:intron | 30.0% | |
| AAATATCCTCATGCTATTGG+AGG | + | Chr5:17832545-17832564 | MsG0580025385.01.T01:intron | 35.0% | |
| AGAGCGATATTATGAGTCTT+TGG | + | Chr5:17832405-17832424 | MsG0580025385.01.T01:intron | 35.0% | |
| AGCATGAGGATATTTGAAGA+TGG | - | Chr5:17832540-17832559 | None:intergenic | 35.0% | |
| CAGAACAAAAGCAAATGCAA+TGG | - | Chr5:17832657-17832676 | None:intergenic | 35.0% | |
| CTTTCTCTATATGGTATGCT+TGG | + | Chr5:17832937-17832956 | MsG0580025385.01.T01:CDS | 35.0% | |
| GAGCGATATTATGAGTCTTT+GGG | + | Chr5:17832406-17832425 | MsG0580025385.01.T01:intron | 35.0% | |
| TCAGGGTTTGGATTCTATTA+CGG | + | Chr5:17832795-17832814 | MsG0580025385.01.T01:intron | 35.0% | |
| ! | GCACAGTTTTTCATTAGACA+AGG | + | Chr5:17832279-17832298 | MsG0580025385.01.T01:CDS | 35.0% |
| ! | GGAATTGTTGTGTTGCTATT+TGG | + | Chr5:17833060-17833079 | MsG0580025385.01.T01:CDS | 35.0% |
| !! | AAGAAGGTGCTTTCTCTATA+TGG | + | Chr5:17832928-17832947 | MsG0580025385.01.T01:CDS | 35.0% |
| !! | AGTGGTTTAATTTGGCTTGT+TGG | + | Chr5:17832442-17832461 | MsG0580025385.01.T01:intron | 35.0% |
| !! | CATTGCATTTGCTTTTGTTC+TGG | + | Chr5:17832655-17832674 | MsG0580025385.01.T01:intron | 35.0% |
| !! | GTGGTTTAATTTGGCTTGTT+GGG | + | Chr5:17832443-17832462 | MsG0580025385.01.T01:intron | 35.0% |
| !! | TTCACAACAGGCTATTTTCA+CGG | + | Chr5:17832593-17832612 | MsG0580025385.01.T01:intron | 35.0% |
| AACGAGTGGGAAAAGGAAAT+AGG | - | Chr5:17832684-17832703 | None:intergenic | 40.0% | |
| ACAACAATTCCAGCAATAGC+AGG | - | Chr5:17833051-17833070 | None:intergenic | 40.0% | |
| ACAATGAAACGAGTGGGAAA+AGG | - | Chr5:17832691-17832710 | None:intergenic | 40.0% | |
| ATTTGGAAACTCAGTGATGC+TGG | + | Chr5:17833077-17833096 | MsG0580025385.01.T01:CDS | 40.0% | |
| CATCGAGTTCGTGTATCATA+TGG | - | Chr5:17832379-17832398 | None:intergenic | 40.0% | |
| CGAAAATGAGATCGAATCAG+TGG | - | Chr5:17832499-17832518 | None:intergenic | 40.0% | |
| GAATCTAAACCAGAAACCAC+CGG | - | Chr5:17833152-17833171 | None:intergenic | 40.0% | |
| TGCTTTCTTGAGAGTTGTTC+CGG | - | Chr5:17832262-17832281 | None:intergenic | 40.0% | |
| TTCCTTGCATCATTCACAAC+AGG | + | Chr5:17832581-17832600 | MsG0580025385.01.T01:intron | 40.0% | |
| TTGTTGGACAGCTTTGCATT+AGG | + | Chr5:17832631-17832650 | MsG0580025385.01.T01:intron | 40.0% | |
| ! | GGTGGTGTGATTTTCATTGT+TGG | + | Chr5:17832615-17832634 | MsG0580025385.01.T01:intron | 40.0% |
| ! | TTGGGTTGTTTCGATTTCAG+TGG | + | Chr5:17832424-17832443 | MsG0580025385.01.T01:intron | 40.0% |
| !! | TCACAACAGGCTATTTTCAC+GGG | + | Chr5:17832594-17832613 | MsG0580025385.01.T01:intron | 40.0% |
| AGCAGTGACAATGAAACGAG+TGG | - | Chr5:17832698-17832717 | None:intergenic | 45.0% | |
| AGCCTGTTGTGAATGATGCA+AGG | - | Chr5:17832586-17832605 | None:intergenic | 45.0% | |
| ATCTTAACCACGCGCAGTAA+AGG | - | Chr5:17832725-17832744 | None:intergenic | 45.0% | |
| CGATAATGAGAGAAGCTCTC+CGG | + | Chr5:17833130-17833149 | MsG0580025385.01.T01:CDS | 45.0% | |
| GCAGTGACAATGAAACGAGT+GGG | - | Chr5:17832697-17832716 | None:intergenic | 45.0% | |
| GGGTTAGATTTGTGCTCCAT+CGG | + | Chr5:17832904-17832923 | MsG0580025385.01.T01:CDS | 45.0% | |
| TCTATTACGGACACAGTCAC+TGG | + | Chr5:17832808-17832827 | MsG0580025385.01.T01:CDS | 45.0% | |
| TTCTCTCGCTTCTGTCTTCA+GGG | + | Chr5:17832778-17832797 | MsG0580025385.01.T01:intron | 45.0% | |
| TTTCTCTCGCTTCTGTCTTC+AGG | + | Chr5:17832777-17832796 | MsG0580025385.01.T01:intron | 45.0% | |
| TTTGTGCTCCATCGGAAAGA+AGG | + | Chr5:17832912-17832931 | MsG0580025385.01.T01:CDS | 45.0% | |
| ! | CTTTTTGCACCTGCTATTGC+TGG | + | Chr5:17833039-17833058 | MsG0580025385.01.T01:CDS | 45.0% |
| ! | GGATTTTGCACGCTTTTGGA+AGG | + | Chr5:17832877-17832896 | MsG0580025385.01.T01:CDS | 45.0% |
| ! | GGTTCACAGTTGGTTCAGTT+GGG | + | Chr5:17832985-17833004 | MsG0580025385.01.T01:CDS | 45.0% |
| !! | AGAAAGCACCTTCTTTCCGA+TGG | - | Chr5:17832923-17832942 | None:intergenic | 45.0% |
| !! | GCACGCTTTTGGAAGGTTTT+GGG | + | Chr5:17832884-17832903 | MsG0580025385.01.T01:CDS | 45.0% |
| !! | TGCACGCTTTTGGAAGGTTT+TGG | + | Chr5:17832883-17832902 | MsG0580025385.01.T01:CDS | 45.0% |
| !!! | TACTGCTGCTGGTTTTTTGG+TGG | + | Chr5:17832329-17832348 | MsG0580025385.01.T01:intron | 45.0% |
| !!! | TGCTACTGCTGCTGGTTTTT+TGG | + | Chr5:17832326-17832345 | MsG0580025385.01.T01:intron | 45.0% |
| AACGAAGTCCTAATCCGTCC+TGG | - | Chr5:17833011-17833030 | None:intergenic | 50.0% | |
| ACGGACACAGTCACTGGAAA+TGG | + | Chr5:17832814-17832833 | MsG0580025385.01.T01:CDS | 50.0% | |
| AGAGCTGCAGGTTTGTGTGT+CGG | + | Chr5:17832963-17832982 | MsG0580025385.01.T01:CDS | 50.0% | |
| AGTAGCATGAAGTGAGAGGC+GGG | - | Chr5:17832313-17832332 | None:intergenic | 50.0% | |
| CAGCAGTAGCATGAAGTGAG+AGG | - | Chr5:17832317-17832336 | None:intergenic | 50.0% | |
| CAGTAGCATGAAGTGAGAGG+CGG | - | Chr5:17832314-17832333 | None:intergenic | 50.0% | |
| CGGACACAGTCACTGGAAAT+GGG | + | Chr5:17832815-17832834 | MsG0580025385.01.T01:CDS | 50.0% | |
| CTTGAGAGTTGTTCCGGTGA+AGG | - | Chr5:17832256-17832275 | None:intergenic | 50.0% | |
| GCAAGACCTCCAATAGCATG+AGG | - | Chr5:17832554-17832573 | None:intergenic | 50.0% | |
| GCGCGTGGTTAAGATGAACT+CGG | + | Chr5:17832730-17832749 | MsG0580025385.01.T01:intron | 50.0% | |
| GGACACAGTCACTGGAAATG+GGG | + | Chr5:17832816-17832835 | MsG0580025385.01.T01:CDS | 50.0% | |
| TAATGAGAGAAGCTCTCCGG+TGG | + | Chr5:17833133-17833152 | MsG0580025385.01.T01:CDS | 50.0% | |
| TATGCTTGGATGAGAGCTGC+AGG | + | Chr5:17832951-17832970 | MsG0580025385.01.T01:CDS | 50.0% | |
| TCACTTCATGCTACTGCTGC+TGG | + | Chr5:17832318-17832337 | MsG0580025385.01.T01:CDS | 50.0% | |
| TCGCTTCTGTCTTCAGGGTT+TGG | + | Chr5:17832783-17832802 | MsG0580025385.01.T01:intron | 50.0% | |
| TCGGTGAAGATGCAGATCGT+TGG | + | Chr5:17832749-17832768 | MsG0580025385.01.T01:intron | 50.0% | |
| TGCCATTCAGAGCACATCCA+GGG | + | Chr5:17832856-17832875 | MsG0580025385.01.T01:CDS | 50.0% | |
| TGGAAACTCAGTGATGCTGG+TGG | + | Chr5:17833080-17833099 | MsG0580025385.01.T01:CDS | 50.0% | |
| TTGTGTGTCGGGTTCACAGT+TGG | + | Chr5:17832975-17832994 | MsG0580025385.01.T01:CDS | 50.0% | |
| ! | ATCCCTGGATGTGCTCTGAA+TGG | - | Chr5:17832861-17832880 | None:intergenic | 50.0% |
| ! | CCAAAAGCGTGCAAAATCCC+TGG | - | Chr5:17832876-17832895 | None:intergenic | 50.0% |
| ! | CCAGGGATTTTGCACGCTTT+TGG | + | Chr5:17832873-17832892 | MsG0580025385.01.T01:CDS | 50.0% |
| ! | GGGTTCACAGTTGGTTCAGT+TGG | + | Chr5:17832984-17833003 | MsG0580025385.01.T01:CDS | 50.0% |
| !! | CAACAGGCTATTTTCACGGG+TGG | + | Chr5:17832597-17832616 | MsG0580025385.01.T01:intron | 50.0% |
| !! | GGACGGATTAGGACTTCGTT+CGG | + | Chr5:17833011-17833030 | MsG0580025385.01.T01:CDS | 50.0% |
| AGAAGCTCTCCGGTGGTTTC+TGG | + | Chr5:17833140-17833159 | MsG0580025385.01.T01:CDS | 55.0% | |
| CTGCCATTCAGAGCACATCC+AGG | + | Chr5:17832855-17832874 | MsG0580025385.01.T01:CDS | 55.0% | |
| GAGCTGCAGGTTTGTGTGTC+GGG | + | Chr5:17832964-17832983 | MsG0580025385.01.T01:CDS | 55.0% | |
| GCTACAACCTTTACTGCGCG+TGG | + | Chr5:17832715-17832734 | MsG0580025385.01.T01:intron | 55.0% | |
| TTGGTTCAGTTGGGCCAGGA+CGG | + | Chr5:17832994-17833013 | MsG0580025385.01.T01:CDS | 55.0% | |
| ! | ACAGTTGGTTCAGTTGGGCC+AGG | + | Chr5:17832990-17833009 | MsG0580025385.01.T01:CDS | 55.0% |
| GAGTTGTTCCGGTGAAGGCG+CGG | - | Chr5:17832251-17832270 | None:intergenic | 60.0% | |
| ! | CAGTTGGGCCAGGACGGATT+AGG | + | Chr5:17833000-17833019 | MsG0580025385.01.T01:CDS | 60.0% |
| !! | CTGGTGGTGCTGTTGCTGCA+GGG | + | Chr5:17833096-17833115 | MsG0580025385.01.T01:CDS | 60.0% |
| !! | GCTGGTGGTGCTGTTGCTGC+AGG | + | Chr5:17833095-17833114 | MsG0580025385.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 17832243 | 17833196 | 17832243 | ID=MsG0580025385.01;Name=MsG0580025385.01 |
| Chr5 | mRNA | 17832243 | 17833196 | 17832243 | ID=MsG0580025385.01.T01;Parent=MsG0580025385.01;Name=MsG0580025385.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|0.5|2|0|164 |
| Chr5 | exon | 17832243 | 17832339 | 17832243 | ID=MsG0580025385.01.T01:exon:3007;Parent=MsG0580025385.01.T01 |
| Chr5 | exon | 17832799 | 17833196 | 17832799 | ID=MsG0580025385.01.T01:exon:3008;Parent=MsG0580025385.01.T01 |
| Chr5 | CDS | 17832243 | 17832339 | 17832243 | ID=MsG0580025385.01.T01:cds;Parent=MsG0580025385.01.T01 |
| Chr5 | CDS | 17832799 | 17833196 | 17832799 | ID=MsG0580025385.01.T01:cds;Parent=MsG0580025385.01.T01 |
| Gene Sequence |
| Protein sequence |
