Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030964.01.T01 | XP_013451026.1 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030964.01.T01 | Q9S7W5 | 75 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 2.36E-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030964.01.T01 | A0A072U6R0 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680030964.01.T01 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000854.01 | MsG0680030964.01 | 0.813161 | 2.943739e-51 | 1.907822e-48 |
| MsG0180001130.01 | MsG0680030964.01 | 0.865643 | 5.090015e-65 | 1.668522e-61 |
| MsG0180001371.01 | MsG0680030964.01 | 0.809723 | 1.643644e-50 | 9.724032e-48 |
| MsG0180003253.01 | MsG0680030964.01 | 0.812651 | 3.809194e-51 | 2.435512e-48 |
| MsG0180003352.01 | MsG0680030964.01 | 0.803803 | 2.927923e-49 | 1.485222e-46 |
| MsG0180004106.01 | MsG0680030964.01 | 0.806948 | 6.419281e-50 | 3.530159e-47 |
| MsG0180004716.01 | MsG0680030964.01 | 0.808465 | 3.056579e-50 | 1.748961e-47 |
| MsG0280011270.01 | MsG0680030964.01 | 0.806048 | 9.937347e-50 | 5.340502e-47 |
| MsG0380011656.01 | MsG0680030964.01 | 0.820343 | 7.210165e-53 | 5.690120e-50 |
| MsG0380012438.01 | MsG0680030964.01 | 0.816340 | 5.816319e-52 | 4.110528e-49 |
| MsG0380013050.01 | MsG0680030964.01 | -0.802694 | 4.967808e-49 | 2.449441e-46 |
| MsG0380013471.01 | MsG0680030964.01 | 0.803081 | 4.132985e-49 | 2.057852e-46 |
| MsG0680030964.01 | MsG0680032413.01 | 0.809580 | 1.764205e-50 | 1.039784e-47 |
| MsG0680030964.01 | MsG0680034028.01 | 0.819470 | 1.142039e-52 | 8.796591e-50 |
| MsG0680030964.01 | MsG0780039964.01 | 0.838756 | 2.380287e-57 | 3.219146e-54 |
| MsG0680030964.01 | MsG0780041159.01 | 0.826125 | 3.221177e-54 | 2.994017e-51 |
| MsG0680030964.01 | MsG0780041256.01 | 0.851595 | 8.009727e-61 | 1.629334e-57 |
| MsG0680030964.01 | MsG0880042256.01 | 0.812803 | 3.527286e-51 | 2.264176e-48 |
| MsG0680030964.01 | MsG0880043014.01 | 0.801622 | 8.253860e-49 | 3.959955e-46 |
| MsG0680030964.01 | MsG0880044105.01 | 0.831800 | 1.359136e-55 | 1.491023e-52 |
| MsG0680030964.01 | MsG0880046300.01 | 0.809555 | 1.785723e-50 | 1.051733e-47 |
| MsG0680030964.01 | MsG0880047460.01 | -0.839486 | 1.539575e-57 | 2.129319e-54 |
| MsG0480021488.01 | MsG0680030964.01 | 0.801037 | 1.087786e-48 | 5.142856e-46 |
| MsG0480021737.01 | MsG0680030964.01 | 0.848653 | 5.344602e-60 | 9.876530e-57 |
| MsG0480021739.01 | MsG0680030964.01 | 0.830132 | 3.488852e-55 | 3.643406e-52 |
| MsG0480022918.01 | MsG0680030964.01 | 0.800272 | 1.557587e-48 | 7.222125e-46 |
| MsG0480023641.01 | MsG0680030964.01 | 0.809535 | 1.803558e-50 | 1.061673e-47 |
| MsG0580024192.01 | MsG0680030964.01 | 0.832416 | 9.573771e-56 | 1.069417e-52 |
| MsG0580024955.01 | MsG0680030964.01 | 0.804283 | 2.327200e-49 | 1.195121e-46 |
| MsG0580026026.01 | MsG0680030964.01 | 0.808204 | 3.474671e-50 | 1.974642e-47 |
| MsG0380015745.01 | MsG0680030964.01 | 0.821368 | 4.190401e-53 | 3.402467e-50 |
| MsG0380016963.01 | MsG0680030964.01 | 0.805716 | 1.166861e-49 | 6.218033e-47 |
| MsG0380017033.01 | MsG0680030964.01 | 0.818182 | 2.240521e-52 | 1.665311e-49 |
| MsG0380017037.01 | MsG0680030964.01 | 0.804232 | 2.384113e-49 | 1.222703e-46 |
| MsG0580028353.01 | MsG0680030964.01 | 0.816845 | 4.483241e-52 | 3.212331e-49 |
| MsG0580028925.01 | MsG0680030964.01 | 0.809060 | 2.280256e-50 | 1.325351e-47 |
| MsG0580030081.01 | MsG0680030964.01 | 0.809752 | 1.619719e-50 | 9.590041e-48 |
| MsG0680030549.01 | MsG0680030964.01 | 0.973891 | 3.337149e-137 | 4.422389e-131 |
| MsG0280006465.01 | MsG0680030964.01 | 0.863631 | 2.169459e-64 | 6.621431e-61 |
| MsG0280008932.01 | MsG0680030964.01 | 0.814051 | 1.875828e-51 | 1.245502e-48 |
| MsG0280009447.01 | MsG0680030964.01 | 0.821536 | 3.831981e-53 | 3.126086e-50 |
| MsG0280010198.01 | MsG0680030964.01 | 0.830515 | 2.812828e-55 | 2.970033e-52 |
| MsG0280010254.01 | MsG0680030964.01 | 0.832672 | 8.270644e-56 | 9.309052e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030964.01.T01 | MTR_6g015350 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0.0 | 656 |
| MsG0680030964.01.T01 | MTR_7g015010 | 44.149 | 376 | 140 | 18 | 2 | 332 | 1 | 351 | 5.07e-66 | 212 |
| MsG0680030964.01.T01 | MTR_4g109660 | 69.318 | 88 | 27 | 0 | 27 | 114 | 34 | 121 | 3.89e-38 | 138 |
| MsG0680030964.01.T01 | MTR_3g026050 | 63.303 | 109 | 37 | 2 | 22 | 128 | 28 | 135 | 7.13e-38 | 139 |
| MsG0680030964.01.T01 | MTR_2g090960 | 58.140 | 86 | 30 | 2 | 27 | 109 | 5 | 87 | 1.23e-23 | 99.8 |
| MsG0680030964.01.T01 | MTR_4g079580 | 56.250 | 96 | 36 | 2 | 27 | 119 | 3 | 95 | 1.59e-23 | 99.4 |
| MsG0680030964.01.T01 | MTR_8g463380 | 53.261 | 92 | 40 | 1 | 19 | 110 | 27 | 115 | 1.22e-21 | 95.5 |
| MsG0680030964.01.T01 | MTR_2g078200 | 63.235 | 68 | 25 | 0 | 43 | 110 | 14 | 81 | 1.29e-20 | 90.5 |
| MsG0680030964.01.T01 | MTR_6g017055 | 42.857 | 105 | 55 | 2 | 50 | 150 | 127 | 230 | 1.56e-16 | 80.1 |
| MsG0680030964.01.T01 | MTR_7g018500 | 56.140 | 57 | 25 | 0 | 51 | 107 | 122 | 178 | 1.01e-14 | 74.7 |
| MsG0680030964.01.T01 | MTR_4g111935 | 58.621 | 58 | 24 | 0 | 50 | 107 | 133 | 190 | 1.05e-14 | 74.7 |
| MsG0680030964.01.T01 | MTR_1g103380 | 51.667 | 60 | 29 | 0 | 48 | 107 | 200 | 259 | 6.81e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030964.01.T01 | AT3G02150 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 9.29e-41 | 144 |
| MsG0680030964.01.T01 | AT3G02150 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 2.40e-40 | 145 |
| MsG0680030964.01.T01 | AT5G60970 | 70.000 | 90 | 26 | 1 | 35 | 124 | 49 | 137 | 3.73e-38 | 139 |
| MsG0680030964.01.T01 | AT5G08070 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 9.65e-37 | 132 |
| MsG0680030964.01.T01 | AT5G08070 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 9.65e-37 | 132 |
| MsG0680030964.01.T01 | AT1G30210 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.95e-28 | 111 |
| MsG0680030964.01.T01 | AT1G30210 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.95e-28 | 111 |
| MsG0680030964.01.T01 | AT4G18390 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.19e-27 | 110 |
| MsG0680030964.01.T01 | AT4G18390 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.19e-27 | 110 |
| MsG0680030964.01.T01 | AT3G15030 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.61e-21 | 95.1 |
| MsG0680030964.01.T01 | AT3G15030 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.61e-21 | 95.1 |
| MsG0680030964.01.T01 | AT3G15030 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.61e-21 | 95.1 |
| MsG0680030964.01.T01 | AT3G15030 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.61e-21 | 95.1 |
| MsG0680030964.01.T01 | AT2G31070 | 66.154 | 65 | 22 | 0 | 43 | 107 | 23 | 87 | 3.28e-21 | 93.6 |
| MsG0680030964.01.T01 | AT1G53230 | 63.235 | 68 | 25 | 0 | 43 | 110 | 43 | 110 | 1.02e-20 | 92.4 |
| MsG0680030964.01.T01 | AT1G53230 | 63.235 | 68 | 25 | 0 | 43 | 110 | 43 | 110 | 1.02e-20 | 92.4 |
| MsG0680030964.01.T01 | AT3G18550 | 34.058 | 138 | 89 | 2 | 36 | 172 | 136 | 272 | 4.99e-15 | 75.9 |
| MsG0680030964.01.T01 | AT3G18550 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.31e-14 | 74.7 |
| MsG0680030964.01.T01 | AT3G18550 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.31e-14 | 74.7 |
| MsG0680030964.01.T01 | AT3G18550 | 34.266 | 143 | 86 | 4 | 36 | 172 | 136 | 276 | 1.31e-14 | 74.7 |
| MsG0680030964.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.69e-14 | 73.9 |
| MsG0680030964.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.69e-14 | 73.9 |
| MsG0680030964.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.80e-14 | 73.9 |
| MsG0680030964.01.T01 | AT1G68800 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.67e-13 | 70.1 |
| MsG0680030964.01.T01 | AT1G68800 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.82e-13 | 70.1 |
Find 66 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTGATCTTTA+TGG | 0.044174 | 6:-12243872 | None:intergenic |
| ATTCCTCAATTATCAAATTT+TGG | 0.140046 | 6:+12243591 | MsG0680030964.01.T01:CDS |
| TTCCATCTATATCTTTAATT+TGG | 0.175055 | 6:-12243623 | None:intergenic |
| GGCAAAACAACACTTCAATT+TGG | 0.234675 | 6:+12243304 | MsG0680030964.01.T01:CDS |
| AATGGAAATTCAGCTTCTTT+TGG | 0.237631 | 6:-12242916 | None:intergenic |
| AGGAAAATCTTGATCTTTAT+GGG | 0.249668 | 6:-12243871 | None:intergenic |
| AACTCAACATTTGATCATAT+TGG | 0.267875 | 6:-12243755 | None:intergenic |
| ATCAAATTCTAAACAAGGTT+TGG | 0.270536 | 6:+12243329 | MsG0680030964.01.T01:CDS |
| AAATGTGGTGATAGACTATT+TGG | 0.273755 | 6:-12243453 | None:intergenic |
| AGCAAAGTATACACAATAAA+AGG | 0.279500 | 6:+12243063 | MsG0680030964.01.T01:CDS |
| TTGTTACTAACAAAGAAAAT+TGG | 0.289821 | 6:+12243358 | MsG0680030964.01.T01:CDS |
| GGAAGAACTTCTTGTTTCAA+TGG | 0.338725 | 6:-12242934 | None:intergenic |
| AAAGATATAGATGGAAATAA+TGG | 0.354082 | 6:+12243630 | MsG0680030964.01.T01:CDS |
| TCAAATTCTAAACAAGGTTT+GGG | 0.369970 | 6:+12243330 | MsG0680030964.01.T01:CDS |
| TAAAAGGACTAAGAGATAGA+AGG | 0.370333 | 6:+12243079 | MsG0680030964.01.T01:CDS |
| CATAGAGGTGAATTGCTGTT+TGG | 0.373931 | 6:-12243116 | None:intergenic |
| TATGATCTTCAAGATAGGTT+AGG | 0.379456 | 6:+12243135 | MsG0680030964.01.T01:CDS |
| GAATAGAAGTGAAGAGGATA+AGG | 0.381720 | 6:+12243383 | MsG0680030964.01.T01:CDS |
| GTGAGGGTGTCTAGAGCCTT+TGG | 0.385600 | 6:+12243024 | MsG0680030964.01.T01:CDS |
| GATGTAGTTGAATCATTTGA+TGG | 0.398042 | 6:-12242955 | None:intergenic |
| ATCATATTTGAGACATTGTC+AGG | 0.398351 | 6:-12243480 | None:intergenic |
| TATGCCACTTGGTTATCAAT+TGG | 0.411517 | 6:+12243551 | MsG0680030964.01.T01:CDS |
| CTATTTCTAATGATGATGTT+AGG | 0.414220 | 6:+12243283 | MsG0680030964.01.T01:CDS |
| AACCAAATTAAAGATATAGA+TGG | 0.417012 | 6:+12243621 | MsG0680030964.01.T01:CDS |
| AATCCAAAATTTGATAATTG+AGG | 0.428558 | 6:-12243594 | None:intergenic |
| TATTTAGTGTATCACTTTGA+AGG | 0.431708 | 6:-12243891 | None:intergenic |
| CTAGACACCCTCACAATTCT+CGG | 0.444864 | 6:-12243015 | None:intergenic |
| ACCTCTATGATCTTCAAGAT+AGG | 0.446546 | 6:+12243130 | MsG0680030964.01.T01:CDS |
| CCTCAAGGAAACTTCACCTT+AGG | 0.453243 | 6:+12243240 | MsG0680030964.01.T01:CDS |
| AACCTAGCAAGGTTGTTGAT+TGG | 0.456423 | 6:+12243166 | MsG0680030964.01.T01:CDS |
| AATCAACAACCTTGCTAGGT+TGG | 0.486484 | 6:-12243164 | None:intergenic |
| ATGATCTTCAAGATAGGTTA+GGG | 0.493307 | 6:+12243136 | MsG0680030964.01.T01:CDS |
| TATTGGTAATTGATTTGTGT+TGG | 0.498253 | 6:-12243738 | None:intergenic |
| AGAAGGTTGATTTGCTCCAC+GGG | 0.498527 | 6:-12243508 | None:intergenic |
| GAAATAGTACTAGCAAAAGA+TGG | 0.507242 | 6:-12243267 | None:intergenic |
| TTGGTTGCTTAATATAGCTA+AGG | 0.527119 | 6:+12243185 | MsG0680030964.01.T01:CDS |
| GTTGACAAACACAATGATGA+TGG | 0.532225 | 6:-12243672 | None:intergenic |
| ACCCTCATGAGTTGTTGAGT+TGG | 0.533643 | 6:-12243804 | None:intergenic |
| CCTTGAGGTATTTGAAGTGG+TGG | 0.545071 | 6:-12243225 | None:intergenic |
| AAAAGGACTAAGAGATAGAA+GGG | 0.548162 | 6:+12243080 | MsG0680030964.01.T01:CDS |
| TGCACTGCTCCAACATGTGA+AGG | 0.549384 | 6:-12243708 | None:intergenic |
| ACATGTTGGAGCAGTGCAGA+TGG | 0.549860 | 6:+12243713 | MsG0680030964.01.T01:CDS |
| CAAACACAATGATGATGGAA+AGG | 0.552149 | 6:-12243667 | None:intergenic |
| AGCAAAAGATGGATAACCTA+AGG | 0.554824 | 6:-12243256 | None:intergenic |
| AGAGGATAAGGAGAAGAAAG+AGG | 0.558032 | 6:+12243395 | MsG0680030964.01.T01:CDS |
| AAGAAGGTTGATTTGCTCCA+CGG | 0.566627 | 6:-12243509 | None:intergenic |
| TGGAAATCAAATTCTAAACA+AGG | 0.571909 | 6:+12243324 | MsG0680030964.01.T01:CDS |
| TTTCCTTGAGGTATTTGAAG+TGG | 0.572428 | 6:-12243228 | None:intergenic |
| AAACACAATGATGATGGAAA+GGG | 0.575569 | 6:-12243666 | None:intergenic |
| TTGGATGAATAGAAGTGAAG+AGG | 0.578717 | 6:+12243377 | MsG0680030964.01.T01:CDS |
| TCAAATATGATTATCTCCCG+TGG | 0.582563 | 6:+12243492 | MsG0680030964.01.T01:CDS |
| TGAGGAATATGACTAGATGA+AGG | 0.598042 | 6:-12243576 | None:intergenic |
| ACCTATCTTGAAGATCATAG+AGG | 0.598434 | 6:-12243131 | None:intergenic |
| AACCAATCAACAACCTTGCT+AGG | 0.598789 | 6:-12243168 | None:intergenic |
| AGGGCTAAACCAACCTAGCA+AGG | 0.604516 | 6:+12243155 | MsG0680030964.01.T01:CDS |
| ATCCAACTCAACAACTCATG+AGG | 0.610385 | 6:+12243802 | MsG0680030964.01.T01:CDS |
| TTGTTGAATACTATGCCACT+TGG | 0.614899 | 6:+12243540 | MsG0680030964.01.T01:CDS |
| TAAAAGATCCGAGAATTGTG+AGG | 0.618056 | 6:+12243007 | MsG0680030964.01.T01:CDS |
| GACTAAGAGATAGAAGGGTG+AGG | 0.620041 | 6:+12243085 | MsG0680030964.01.T01:CDS |
| AAAAGATCCGAGAATTGTGA+GGG | 0.632124 | 6:+12243008 | MsG0680030964.01.T01:CDS |
| TCCAACTCAACAACTCATGA+GGG | 0.652080 | 6:+12243803 | MsG0680030964.01.T01:CDS |
| CCACCACTTCAAATACCTCA+AGG | 0.652969 | 6:+12243225 | MsG0680030964.01.T01:CDS |
| CATCATCAACAACATCGCAA+TGG | 0.655304 | 6:+12242977 | MsG0680030964.01.T01:CDS |
| CCTAAGGTGAAGTTTCCTTG+AGG | 0.673049 | 6:-12243240 | None:intergenic |
| GGCTCCAATTGATAACCAAG+TGG | 0.685997 | 6:-12243555 | None:intergenic |
| ACATTGTCAGGTACTAAATG+TGG | 0.701020 | 6:-12243468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATAGATGGAAATAA+TGG | + | Chr6:12243630-12243649 | MsG0680030964.01.T01:CDS | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | Chr6:12243621-12243640 | MsG0680030964.01.T01:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | Chr6:12243626-12243645 | None:intergenic | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | Chr6:12243834-12243853 | None:intergenic | 20.0% |
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | Chr6:12243358-12243377 | MsG0680030964.01.T01:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | Chr6:12243597-12243616 | None:intergenic | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | Chr6:12243591-12243610 | MsG0680030964.01.T01:CDS | 20.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | Chr6:12243758-12243777 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | Chr6:12243875-12243894 | None:intergenic | 25.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | Chr6:12243063-12243082 | MsG0680030964.01.T01:CDS | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | Chr6:12243874-12243893 | None:intergenic | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | Chr6:12243329-12243348 | MsG0680030964.01.T01:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | Chr6:12243330-12243349 | MsG0680030964.01.T01:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | Chr6:12243324-12243343 | MsG0680030964.01.T01:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | Chr6:12243283-12243302 | MsG0680030964.01.T01:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | Chr6:12243741-12243760 | None:intergenic | 25.0% |
| AAAAGGACTAAGAGATAGAA+GGG | + | Chr6:12243080-12243099 | MsG0680030964.01.T01:CDS | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | Chr6:12243456-12243475 | None:intergenic | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | Chr6:12243136-12243155 | MsG0680030964.01.T01:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | Chr6:12243270-12243289 | None:intergenic | 30.0% | |
| GATGTAGTTGAATCATTTGA+TGG | - | Chr6:12242958-12242977 | None:intergenic | 30.0% | |
| TAAAAGGACTAAGAGATAGA+AGG | + | Chr6:12243079-12243098 | MsG0680030964.01.T01:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | Chr6:12243135-12243154 | MsG0680030964.01.T01:CDS | 30.0% | |
| TTCAACAATCCCAAAAAAGA+AGG | - | Chr6:12243528-12243547 | None:intergenic | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | Chr6:12243185-12243204 | MsG0680030964.01.T01:CDS | 30.0% | |
| ! | AATGGAAATTCAGCTTCTTT+TGG | - | Chr6:12242919-12242938 | None:intergenic | 30.0% |
| ! | ATCATATTTGAGACATTGTC+AGG | - | Chr6:12243483-12243502 | None:intergenic | 30.0% |
| ! | ATGTCTATCTTTTGTTCCAA+AGG | - | Chr6:12243043-12243062 | None:intergenic | 30.0% |
| ! | CAATATTTTCCTTCACATGT+TGG | + | Chr6:12243699-12243718 | MsG0680030964.01.T01:CDS | 30.0% |
| !! | AAACACAATGATGATGGAAA+GGG | - | Chr6:12243669-12243688 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | Chr6:12243515-12243534 | MsG0680030964.01.T01:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | Chr6:12243516-12243535 | MsG0680030964.01.T01:CDS | 30.0% |
| AAAAGATCCGAGAATTGTGA+GGG | + | Chr6:12243008-12243027 | MsG0680030964.01.T01:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | Chr6:12243471-12243490 | None:intergenic | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | Chr6:12243134-12243153 | None:intergenic | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | Chr6:12243130-12243149 | MsG0680030964.01.T01:CDS | 35.0% | |
| AGCAAAAGATGGATAACCTA+AGG | - | Chr6:12243259-12243278 | None:intergenic | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | Chr6:12243383-12243402 | MsG0680030964.01.T01:CDS | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | Chr6:12243304-12243323 | MsG0680030964.01.T01:CDS | 35.0% | |
| GTTGACAAACACAATGATGA+TGG | - | Chr6:12243675-12243694 | None:intergenic | 35.0% | |
| TAAAAGATCCGAGAATTGTG+AGG | + | Chr6:12243007-12243026 | MsG0680030964.01.T01:CDS | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | Chr6:12243492-12243511 | MsG0680030964.01.T01:CDS | 35.0% | |
| TGAGGAATATGACTAGATGA+AGG | - | Chr6:12243579-12243598 | None:intergenic | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | Chr6:12243377-12243396 | MsG0680030964.01.T01:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | Chr6:12243540-12243559 | MsG0680030964.01.T01:CDS | 35.0% | |
| ! | GGAAGAACTTCTTGTTTCAA+TGG | - | Chr6:12242937-12242956 | None:intergenic | 35.0% |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | Chr6:12243551-12243570 | MsG0680030964.01.T01:CDS | 35.0% |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | Chr6:12243231-12243250 | None:intergenic | 35.0% |
| !! | CAAACACAATGATGATGGAA+AGG | - | Chr6:12243670-12243689 | None:intergenic | 35.0% |
| AACCAATCAACAACCTTGCT+AGG | - | Chr6:12243171-12243190 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | Chr6:12243166-12243185 | MsG0680030964.01.T01:CDS | 40.0% | |
| AATCAACAACCTTGCTAGGT+TGG | - | Chr6:12243167-12243186 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | Chr6:12243395-12243414 | MsG0680030964.01.T01:CDS | 40.0% | |
| ATCCAACTCAACAACTCATG+AGG | + | Chr6:12243802-12243821 | MsG0680030964.01.T01:CDS | 40.0% | |
| CATCATCAACAACATCGCAA+TGG | + | Chr6:12242977-12242996 | MsG0680030964.01.T01:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | Chr6:12243803-12243822 | MsG0680030964.01.T01:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | Chr6:12243119-12243138 | None:intergenic | 40.0% |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | Chr6:12243512-12243531 | None:intergenic | 40.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | Chr6:12243807-12243826 | None:intergenic | 45.0% | |
| CCACCACTTCAAATACCTCA+AGG | + | Chr6:12243225-12243244 | MsG0680030964.01.T01:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | Chr6:12243243-12243262 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | Chr6:12243240-12243259 | MsG0680030964.01.T01:CDS | 45.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | Chr6:12243018-12243037 | None:intergenic | 45.0% | |
| GACTAAGAGATAGAAGGGTG+AGG | + | Chr6:12243085-12243104 | MsG0680030964.01.T01:CDS | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | Chr6:12243228-12243247 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | Chr6:12243558-12243577 | None:intergenic | 45.0% |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | Chr6:12243511-12243530 | None:intergenic | 45.0% |
| ACATGTTGGAGCAGTGCAGA+TGG | + | Chr6:12243713-12243732 | MsG0680030964.01.T01:CDS | 50.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | Chr6:12243155-12243174 | MsG0680030964.01.T01:CDS | 50.0% | |
| TGCACTGCTCCAACATGTGA+AGG | - | Chr6:12243711-12243730 | None:intergenic | 50.0% | |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | Chr6:12243024-12243043 | MsG0680030964.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 12242904 | 12243902 | 12242904 | ID=MsG0680030964.01;Name=MsG0680030964.01 |
| Chr6 | mRNA | 12242904 | 12243902 | 12242904 | ID=MsG0680030964.01.T01;Parent=MsG0680030964.01;Name=MsG0680030964.01.T01;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|332 |
| Chr6 | exon | 12242904 | 12243902 | 12242904 | ID=MsG0680030964.01.T01:exon:8747;Parent=MsG0680030964.01.T01 |
| Chr6 | CDS | 12242904 | 12243902 | 12242904 | ID=MsG0680030964.01.T01:cds;Parent=MsG0680030964.01.T01 |
| Gene Sequence |
| Protein sequence |
