Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030549.01.T01 | XP_013451026.1 | 95.495 | 333 | 14 | 1 | 1 | 332 | 1 | 333 | 0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030549.01.T01 | Q9S7W5 | 75 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 2.19E-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030549.01.T01 | A0A072U6R0 | 95.495 | 333 | 14 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680030549.01.T01 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048016.01 | MsG0680030549.01 | 0.803607 | 3.215195e-49 | 1.622786e-46 |
| MsG0180001130.01 | MsG0680030549.01 | 0.857667 | 1.396021e-62 | 3.472379e-59 |
| MsG0180001371.01 | MsG0680030549.01 | 0.813364 | 2.657630e-51 | 1.732104e-48 |
| MsG0180003253.01 | MsG0680030549.01 | 0.806853 | 6.722769e-50 | 3.688067e-47 |
| MsG0180003352.01 | MsG0680030549.01 | 0.820390 | 7.035082e-53 | 5.559479e-50 |
| MsG0280011073.01 | MsG0680030549.01 | 0.807877 | 4.078852e-50 | 2.297849e-47 |
| MsG0280011270.01 | MsG0680030549.01 | 0.803466 | 3.440037e-49 | 1.729930e-46 |
| MsG0380011656.01 | MsG0680030549.01 | 0.820525 | 6.551160e-53 | 5.195904e-50 |
| MsG0380013471.01 | MsG0680030549.01 | 0.804543 | 2.054245e-49 | 1.062007e-46 |
| MsG0480021488.01 | MsG0680030549.01 | 0.819274 | 1.265796e-52 | 9.695871e-50 |
| MsG0480021737.01 | MsG0680030549.01 | 0.860968 | 1.426446e-63 | 3.970770e-60 |
| MsG0480021739.01 | MsG0680030549.01 | 0.848142 | 7.398963e-60 | 1.344687e-56 |
| MsG0480021867.01 | MsG0680030549.01 | 0.819111 | 1.378909e-52 | 1.051529e-49 |
| MsG0480022918.01 | MsG0680030549.01 | 0.804813 | 1.804297e-49 | 9.394047e-47 |
| MsG0480023641.01 | MsG0680030549.01 | 0.816212 | 6.212031e-52 | 4.374824e-49 |
| MsG0580024192.01 | MsG0680030549.01 | 0.819443 | 1.158076e-52 | 8.913247e-50 |
| MsG0580026026.01 | MsG0680030549.01 | 0.804083 | 2.560900e-49 | 1.308443e-46 |
| MsG0380015745.01 | MsG0680030549.01 | 0.825133 | 5.534716e-54 | 5.001499e-51 |
| MsG0380016963.01 | MsG0680030549.01 | 0.831151 | 1.964182e-55 | 2.113343e-52 |
| MsG0380017033.01 | MsG0680030549.01 | 0.823198 | 1.576267e-53 | 1.348035e-50 |
| MsG0380017037.01 | MsG0680030549.01 | 0.814141 | 1.792289e-51 | 1.192954e-48 |
| MsG0580028353.01 | MsG0680030549.01 | 0.810732 | 9.955996e-51 | 6.048849e-48 |
| MsG0580028925.01 | MsG0680030549.01 | 0.805765 | 1.139971e-49 | 6.082198e-47 |
| MsG0580029389.01 | MsG0680030549.01 | 0.806259 | 8.974391e-50 | 4.849029e-47 |
| MsG0680030549.01 | MsG0680030964.01 | 0.973891 | 3.337149e-137 | 4.422389e-131 |
| MsG0680030549.01 | MsG0680032413.01 | 0.801786 | 7.639781e-49 | 3.680711e-46 |
| MsG0680030549.01 | MsG0680034028.01 | 0.800138 | 1.659041e-48 | 7.666339e-46 |
| MsG0680030549.01 | MsG0780037946.01 | 0.811478 | 6.863915e-51 | 4.253381e-48 |
| MsG0680030549.01 | MsG0780039964.01 | 0.837751 | 4.320194e-57 | 5.666838e-54 |
| MsG0680030549.01 | MsG0780039994.01 | 0.807313 | 5.373057e-50 | 2.983073e-47 |
| MsG0680030549.01 | MsG0780041159.01 | 0.832774 | 7.803053e-56 | 8.809590e-53 |
| MsG0680030549.01 | MsG0780041256.01 | 0.833635 | 4.760982e-56 | 5.515043e-53 |
| MsG0680030549.01 | MsG0880042256.01 | 0.816790 | 4.610897e-52 | 3.298858e-49 |
| MsG0680030549.01 | MsG0880042876.01 | 0.814212 | 1.728816e-51 | 1.152883e-48 |
| MsG0680030549.01 | MsG0880043250.01 | 0.803688 | 3.093705e-49 | 1.564670e-46 |
| MsG0680030549.01 | MsG0880044105.01 | 0.843965 | 1.012618e-58 | 1.610776e-55 |
| MsG0680030549.01 | MsG0880046300.01 | 0.800397 | 1.469260e-48 | 6.834195e-46 |
| MsG0680030549.01 | MsG0880047460.01 | -0.843605 | 1.264695e-58 | 1.989233e-55 |
| MsG0280006465.01 | MsG0680030549.01 | 0.862026 | 6.782301e-64 | 1.957692e-60 |
| MsG0280008932.01 | MsG0680030549.01 | 0.808112 | 3.634189e-50 | 2.060197e-47 |
| MsG0280009447.01 | MsG0680030549.01 | 0.826772 | 2.258264e-54 | 2.138039e-51 |
| MsG0280010198.01 | MsG0680030549.01 | 0.826722 | 2.320893e-54 | 2.194150e-51 |
| MsG0280010254.01 | MsG0680030549.01 | 0.850617 | 1.512780e-60 | 2.980582e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030549.01.T01 | MTR_6g015350 | 95.495 | 333 | 14 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| MsG0680030549.01.T01 | MTR_7g015010 | 44.986 | 369 | 133 | 18 | 9 | 332 | 8 | 351 | 7.07e-66 | 211 |
| MsG0680030549.01.T01 | MTR_3g026050 | 54.412 | 136 | 53 | 3 | 1 | 128 | 1 | 135 | 8.41e-38 | 139 |
| MsG0680030549.01.T01 | MTR_4g109660 | 68.182 | 88 | 28 | 0 | 27 | 114 | 34 | 121 | 1.84e-37 | 136 |
| MsG0680030549.01.T01 | MTR_2g090960 | 65.714 | 70 | 21 | 1 | 43 | 109 | 18 | 87 | 4.04e-23 | 98.2 |
| MsG0680030549.01.T01 | MTR_4g079580 | 61.728 | 81 | 28 | 1 | 42 | 119 | 15 | 95 | 5.15e-23 | 98.2 |
| MsG0680030549.01.T01 | MTR_8g463380 | 53.261 | 92 | 40 | 1 | 19 | 110 | 27 | 115 | 8.01e-22 | 95.9 |
| MsG0680030549.01.T01 | MTR_2g078200 | 63.235 | 68 | 25 | 0 | 43 | 110 | 14 | 81 | 1.33e-20 | 90.5 |
| MsG0680030549.01.T01 | MTR_6g017055 | 42.857 | 105 | 55 | 2 | 50 | 150 | 127 | 230 | 1.71e-16 | 80.1 |
| MsG0680030549.01.T01 | MTR_7g018500 | 56.140 | 57 | 25 | 0 | 51 | 107 | 122 | 178 | 1.03e-14 | 74.7 |
| MsG0680030549.01.T01 | MTR_4g111935 | 58.621 | 58 | 24 | 0 | 50 | 107 | 133 | 190 | 1.19e-14 | 74.7 |
| MsG0680030549.01.T01 | MTR_1g103380 | 51.667 | 60 | 29 | 0 | 48 | 107 | 200 | 259 | 7.19e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030549.01.T01 | AT3G02150 | 72.165 | 97 | 27 | 0 | 23 | 119 | 48 | 144 | 9.29e-41 | 144 |
| MsG0680030549.01.T01 | AT3G02150 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 2.23e-40 | 145 |
| MsG0680030549.01.T01 | AT5G60970 | 70.000 | 90 | 26 | 1 | 35 | 124 | 49 | 137 | 3.89e-38 | 139 |
| MsG0680030549.01.T01 | AT5G08070 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 1.02e-36 | 132 |
| MsG0680030549.01.T01 | AT5G08070 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 1.02e-36 | 132 |
| MsG0680030549.01.T01 | AT1G30210 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 6.39e-28 | 111 |
| MsG0680030549.01.T01 | AT1G30210 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 6.39e-28 | 111 |
| MsG0680030549.01.T01 | AT4G18390 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.42e-27 | 110 |
| MsG0680030549.01.T01 | AT4G18390 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.42e-27 | 110 |
| MsG0680030549.01.T01 | AT3G15030 | 53.333 | 90 | 39 | 1 | 23 | 109 | 19 | 108 | 1.34e-21 | 95.1 |
| MsG0680030549.01.T01 | AT3G15030 | 53.333 | 90 | 39 | 1 | 23 | 109 | 19 | 108 | 1.34e-21 | 95.1 |
| MsG0680030549.01.T01 | AT3G15030 | 53.333 | 90 | 39 | 1 | 23 | 109 | 19 | 108 | 1.34e-21 | 95.1 |
| MsG0680030549.01.T01 | AT3G15030 | 53.333 | 90 | 39 | 1 | 23 | 109 | 19 | 108 | 1.34e-21 | 95.1 |
| MsG0680030549.01.T01 | AT2G31070 | 66.154 | 65 | 22 | 0 | 43 | 107 | 23 | 87 | 3.01e-21 | 93.6 |
| MsG0680030549.01.T01 | AT1G53230 | 51.685 | 89 | 40 | 1 | 22 | 110 | 25 | 110 | 8.40e-21 | 92.4 |
| MsG0680030549.01.T01 | AT1G53230 | 51.685 | 89 | 40 | 1 | 22 | 110 | 25 | 110 | 8.40e-21 | 92.4 |
| MsG0680030549.01.T01 | AT3G18550 | 34.058 | 138 | 89 | 2 | 36 | 172 | 136 | 272 | 5.23e-15 | 75.9 |
| MsG0680030549.01.T01 | AT3G18550 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.26e-14 | 74.7 |
| MsG0680030549.01.T01 | AT3G18550 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.26e-14 | 74.7 |
| MsG0680030549.01.T01 | AT3G18550 | 34.266 | 143 | 86 | 4 | 36 | 172 | 136 | 276 | 1.59e-14 | 74.3 |
| MsG0680030549.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.69e-14 | 73.9 |
| MsG0680030549.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.69e-14 | 73.9 |
| MsG0680030549.01.T01 | AT1G67260 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.79e-14 | 73.9 |
| MsG0680030549.01.T01 | AT1G68800 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.68e-13 | 70.1 |
| MsG0680030549.01.T01 | AT1G68800 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.85e-13 | 70.1 |
Find 64 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTGATCTTTA+TGG | 0.044174 | 6:-5153295 | None:intergenic |
| ATTCCTCAATTATCAAATTT+TGG | 0.140046 | 6:+5153014 | MsG0680030549.01.T01:CDS |
| TTCCATCTATATCTTTAATT+TGG | 0.175055 | 6:-5153046 | None:intergenic |
| GGCAAAACAACACTTCAATT+TGG | 0.234675 | 6:+5152727 | MsG0680030549.01.T01:CDS |
| AGGAAAATCTTGATCTTTAT+GGG | 0.249668 | 6:-5153294 | None:intergenic |
| AACTCAACATTTGATCATAT+TGG | 0.267875 | 6:-5153178 | None:intergenic |
| ATCAAATTCTAAACAAGGTT+TGG | 0.270536 | 6:+5152752 | MsG0680030549.01.T01:CDS |
| AAATGTGGTGATAGACTATT+TGG | 0.273755 | 6:-5152876 | None:intergenic |
| AGCAAAGTATACACAATAAA+AGG | 0.279500 | 6:+5152486 | MsG0680030549.01.T01:CDS |
| TTGTTACTAACAAAGAAAAT+TGG | 0.289821 | 6:+5152781 | MsG0680030549.01.T01:CDS |
| AATGGAAATTCGCCTTCTTT+TGG | 0.297621 | 6:-5152339 | None:intergenic |
| AAAGATATAGATGGAAATAA+TGG | 0.354082 | 6:+5153053 | MsG0680030549.01.T01:CDS |
| TCAAATTCTAAACAAGGTTT+GGG | 0.369970 | 6:+5152753 | MsG0680030549.01.T01:CDS |
| TAAAAGGACTAAGAGATAGA+AGG | 0.370333 | 6:+5152502 | MsG0680030549.01.T01:CDS |
| CATAGAGGTGAATTGCTGTT+TGG | 0.373931 | 6:-5152539 | None:intergenic |
| TATGATCTTCAAGATAGGTT+AGG | 0.379456 | 6:+5152558 | MsG0680030549.01.T01:CDS |
| GAATAGAAGTGAAGAGGATA+AGG | 0.381720 | 6:+5152806 | MsG0680030549.01.T01:CDS |
| GTGAGGGTGTCTAGAGCCTT+TGG | 0.385600 | 6:+5152447 | MsG0680030549.01.T01:CDS |
| ATCATATTTGAGACATTGTC+AGG | 0.398351 | 6:-5152903 | None:intergenic |
| GATGTAGTTGAATCGTTTGA+TGG | 0.407912 | 6:-5152378 | None:intergenic |
| TATGCCACTTGGTTATCAAT+TGG | 0.411517 | 6:+5152974 | MsG0680030549.01.T01:CDS |
| CTATTTCTAATGATGATGTT+AGG | 0.414220 | 6:+5152706 | MsG0680030549.01.T01:CDS |
| AACCAAATTAAAGATATAGA+TGG | 0.417012 | 6:+5153044 | MsG0680030549.01.T01:CDS |
| AATCCAAAATTTGATAATTG+AGG | 0.428558 | 6:-5153017 | None:intergenic |
| CTAGACACCCTCACAATTCT+CGG | 0.444864 | 6:-5152438 | None:intergenic |
| ACCTCTATGATCTTCAAGAT+AGG | 0.446546 | 6:+5152553 | MsG0680030549.01.T01:CDS |
| CCTCAAGGAAACTTCACCTT+AGG | 0.453243 | 6:+5152663 | MsG0680030549.01.T01:CDS |
| AACCTAGCAAGGTTGTTGAT+TGG | 0.456423 | 6:+5152589 | MsG0680030549.01.T01:CDS |
| AATCAACAACCTTGCTAGGT+TGG | 0.486484 | 6:-5152587 | None:intergenic |
| ATGATCTTCAAGATAGGTTA+GGG | 0.493307 | 6:+5152559 | MsG0680030549.01.T01:CDS |
| ATGATTGAAATTCCAAAAGA+AGG | 0.497367 | 6:+5152327 | MsG0680030549.01.T01:CDS |
| TATTGGTAATTGATTTGTGT+TGG | 0.498253 | 6:-5153161 | None:intergenic |
| AGAAGGTTGATTTGCTCCAC+GGG | 0.498527 | 6:-5152931 | None:intergenic |
| GAAATAGTACTAGCAAAAGA+TGG | 0.507242 | 6:-5152690 | None:intergenic |
| TTGGTTGCTTAATATAGCTA+AGG | 0.527119 | 6:+5152608 | MsG0680030549.01.T01:CDS |
| GTTGACAAACACAATGATGA+TGG | 0.532225 | 6:-5153095 | None:intergenic |
| ACCCTCATGAGTTGTTGAGT+TGG | 0.533643 | 6:-5153227 | None:intergenic |
| CCTTGAGGTATTTGAAGTGG+TGG | 0.545071 | 6:-5152648 | None:intergenic |
| AAAAGGACTAAGAGATAGAA+GGG | 0.548162 | 6:+5152503 | MsG0680030549.01.T01:CDS |
| TGCACTGCTCCAACATGTGA+AGG | 0.549384 | 6:-5153131 | None:intergenic |
| ACATGTTGGAGCAGTGCAGA+TGG | 0.549860 | 6:+5153136 | MsG0680030549.01.T01:CDS |
| CAAACACAATGATGATGGAA+AGG | 0.552149 | 6:-5153090 | None:intergenic |
| AGCAAAAGATGGATAACCTA+AGG | 0.554824 | 6:-5152679 | None:intergenic |
| AGAGGATAAGGAGAAGAAAG+AGG | 0.558032 | 6:+5152818 | MsG0680030549.01.T01:CDS |
| AAGAAGGTTGATTTGCTCCA+CGG | 0.566627 | 6:-5152932 | None:intergenic |
| TGGAAATCAAATTCTAAACA+AGG | 0.571909 | 6:+5152747 | MsG0680030549.01.T01:CDS |
| TTTCCTTGAGGTATTTGAAG+TGG | 0.572428 | 6:-5152651 | None:intergenic |
| AAACACAATGATGATGGAAA+GGG | 0.575569 | 6:-5153089 | None:intergenic |
| TTGGATGAATAGAAGTGAAG+AGG | 0.578717 | 6:+5152800 | MsG0680030549.01.T01:CDS |
| TCAAATATGATTATCTCCCG+TGG | 0.582563 | 6:+5152915 | MsG0680030549.01.T01:CDS |
| TGAGGAATATGACTAGATGA+AGG | 0.598042 | 6:-5152999 | None:intergenic |
| ACCTATCTTGAAGATCATAG+AGG | 0.598434 | 6:-5152554 | None:intergenic |
| AACCAATCAACAACCTTGCT+AGG | 0.598789 | 6:-5152591 | None:intergenic |
| AGGGCTAAACCAACCTAGCA+AGG | 0.604516 | 6:+5152578 | MsG0680030549.01.T01:CDS |
| ATCCAACTCAACAACTCATG+AGG | 0.610385 | 6:+5153225 | MsG0680030549.01.T01:CDS |
| TTGTTGAATACTATGCCACT+TGG | 0.614899 | 6:+5152963 | MsG0680030549.01.T01:CDS |
| TAAAAGATCCGAGAATTGTG+AGG | 0.618056 | 6:+5152430 | MsG0680030549.01.T01:CDS |
| CATCGTCAGCAACATCGCAA+TGG | 0.629766 | 6:+5152400 | MsG0680030549.01.T01:CDS |
| AAAAGATCCGAGAATTGTGA+GGG | 0.632124 | 6:+5152431 | MsG0680030549.01.T01:CDS |
| TCCAACTCAACAACTCATGA+GGG | 0.652080 | 6:+5153226 | MsG0680030549.01.T01:CDS |
| CCACCACTTCAAATACCTCA+AGG | 0.652969 | 6:+5152648 | MsG0680030549.01.T01:CDS |
| CCTAAGGTGAAGTTTCCTTG+AGG | 0.673049 | 6:-5152663 | None:intergenic |
| GGCTCCAATTGATAACCAAG+TGG | 0.685997 | 6:-5152978 | None:intergenic |
| ACATTGTCAGGTACTAAATG+TGG | 0.701020 | 6:-5152891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATAGATGGAAATAA+TGG | + | Chr6:5153053-5153072 | MsG0680030549.01.T01:CDS | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | Chr6:5153044-5153063 | MsG0680030549.01.T01:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | Chr6:5153049-5153068 | None:intergenic | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | Chr6:5153257-5153276 | None:intergenic | 20.0% |
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | Chr6:5152781-5152800 | MsG0680030549.01.T01:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | Chr6:5153020-5153039 | None:intergenic | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | Chr6:5153014-5153033 | MsG0680030549.01.T01:CDS | 20.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | Chr6:5153181-5153200 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | Chr6:5153298-5153317 | None:intergenic | 25.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | Chr6:5152486-5152505 | MsG0680030549.01.T01:CDS | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | Chr6:5153297-5153316 | None:intergenic | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | Chr6:5152752-5152771 | MsG0680030549.01.T01:CDS | 25.0% |
| ! | ATGATTGAAATTCCAAAAGA+AGG | + | Chr6:5152327-5152346 | MsG0680030549.01.T01:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | Chr6:5152753-5152772 | MsG0680030549.01.T01:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | Chr6:5152747-5152766 | MsG0680030549.01.T01:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | Chr6:5152706-5152725 | MsG0680030549.01.T01:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | Chr6:5153164-5153183 | None:intergenic | 25.0% |
| AAAAGGACTAAGAGATAGAA+GGG | + | Chr6:5152503-5152522 | MsG0680030549.01.T01:CDS | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | Chr6:5152879-5152898 | None:intergenic | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | Chr6:5152559-5152578 | MsG0680030549.01.T01:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | Chr6:5152693-5152712 | None:intergenic | 30.0% | |
| TAAAAGGACTAAGAGATAGA+AGG | + | Chr6:5152502-5152521 | MsG0680030549.01.T01:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | Chr6:5152558-5152577 | MsG0680030549.01.T01:CDS | 30.0% | |
| TTCAACAATCCCAAAAAAGA+AGG | - | Chr6:5152951-5152970 | None:intergenic | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | Chr6:5152608-5152627 | MsG0680030549.01.T01:CDS | 30.0% | |
| ! | ATCATATTTGAGACATTGTC+AGG | - | Chr6:5152906-5152925 | None:intergenic | 30.0% |
| ! | CAATATTTTCCTTCACATGT+TGG | + | Chr6:5153122-5153141 | MsG0680030549.01.T01:CDS | 30.0% |
| !! | AAACACAATGATGATGGAAA+GGG | - | Chr6:5153092-5153111 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | Chr6:5152938-5152957 | MsG0680030549.01.T01:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | Chr6:5152939-5152958 | MsG0680030549.01.T01:CDS | 30.0% |
| !!! | GGAAGAACTTCTTGTTTTAA+TGG | - | Chr6:5152360-5152379 | None:intergenic | 30.0% |
| AAAAGATCCGAGAATTGTGA+GGG | + | Chr6:5152431-5152450 | MsG0680030549.01.T01:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | Chr6:5152894-5152913 | None:intergenic | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | Chr6:5152557-5152576 | None:intergenic | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | Chr6:5152553-5152572 | MsG0680030549.01.T01:CDS | 35.0% | |
| AGCAAAAGATGGATAACCTA+AGG | - | Chr6:5152682-5152701 | None:intergenic | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | Chr6:5152806-5152825 | MsG0680030549.01.T01:CDS | 35.0% | |
| GATGTAGTTGAATCGTTTGA+TGG | - | Chr6:5152381-5152400 | None:intergenic | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | Chr6:5152727-5152746 | MsG0680030549.01.T01:CDS | 35.0% | |
| GTTGACAAACACAATGATGA+TGG | - | Chr6:5153098-5153117 | None:intergenic | 35.0% | |
| TAAAAGATCCGAGAATTGTG+AGG | + | Chr6:5152430-5152449 | MsG0680030549.01.T01:CDS | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | Chr6:5152915-5152934 | MsG0680030549.01.T01:CDS | 35.0% | |
| TGAGGAATATGACTAGATGA+AGG | - | Chr6:5153002-5153021 | None:intergenic | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | Chr6:5152800-5152819 | MsG0680030549.01.T01:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | Chr6:5152963-5152982 | MsG0680030549.01.T01:CDS | 35.0% | |
| ! | AATGGAAATTCGCCTTCTTT+TGG | - | Chr6:5152342-5152361 | None:intergenic | 35.0% |
| ! | GTGTCTATCTTTTGTTCCAA+AGG | - | Chr6:5152466-5152485 | None:intergenic | 35.0% |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | Chr6:5152974-5152993 | MsG0680030549.01.T01:CDS | 35.0% |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | Chr6:5152654-5152673 | None:intergenic | 35.0% |
| !! | CAAACACAATGATGATGGAA+AGG | - | Chr6:5153093-5153112 | None:intergenic | 35.0% |
| AACCAATCAACAACCTTGCT+AGG | - | Chr6:5152594-5152613 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | Chr6:5152589-5152608 | MsG0680030549.01.T01:CDS | 40.0% | |
| AATCAACAACCTTGCTAGGT+TGG | - | Chr6:5152590-5152609 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | Chr6:5152818-5152837 | MsG0680030549.01.T01:CDS | 40.0% | |
| ATCCAACTCAACAACTCATG+AGG | + | Chr6:5153225-5153244 | MsG0680030549.01.T01:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | Chr6:5153226-5153245 | MsG0680030549.01.T01:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | Chr6:5152542-5152561 | None:intergenic | 40.0% |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | Chr6:5152935-5152954 | None:intergenic | 40.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | Chr6:5153230-5153249 | None:intergenic | 45.0% | |
| CCACCACTTCAAATACCTCA+AGG | + | Chr6:5152648-5152667 | MsG0680030549.01.T01:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | Chr6:5152666-5152685 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | Chr6:5152663-5152682 | MsG0680030549.01.T01:CDS | 45.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | Chr6:5152441-5152460 | None:intergenic | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | Chr6:5152651-5152670 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | Chr6:5152981-5153000 | None:intergenic | 45.0% |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | Chr6:5152934-5152953 | None:intergenic | 45.0% |
| ACATGTTGGAGCAGTGCAGA+TGG | + | Chr6:5153136-5153155 | MsG0680030549.01.T01:CDS | 50.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | Chr6:5152578-5152597 | MsG0680030549.01.T01:CDS | 50.0% | |
| CATCGTCAGCAACATCGCAA+TGG | + | Chr6:5152400-5152419 | MsG0680030549.01.T01:CDS | 50.0% | |
| TGCACTGCTCCAACATGTGA+AGG | - | Chr6:5153134-5153153 | None:intergenic | 50.0% | |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | Chr6:5152447-5152466 | MsG0680030549.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 5152327 | 5153325 | 5152327 | ID=MsG0680030549.01;Name=MsG0680030549.01 |
| Chr6 | mRNA | 5152327 | 5153325 | 5152327 | ID=MsG0680030549.01.T01;Parent=MsG0680030549.01;Name=MsG0680030549.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|332 |
| Chr6 | exon | 5152327 | 5153325 | 5152327 | ID=MsG0680030549.01.T01:exon:6619;Parent=MsG0680030549.01.T01 |
| Chr6 | CDS | 5152327 | 5153325 | 5152327 | ID=MsG0680030549.01.T01:cds;Parent=MsG0680030549.01.T01 |
| Gene Sequence |
| Protein sequence |
