AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000535.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000535.01.T01 MTR_1g014080 96.928 651 5 2 1 650 1 637 0.0 1288
MsG0180000535.01.T01 MTR_3g105950 89.065 631 54 2 21 650 20 636 0.0 1139
MsG0180000535.01.T01 MTR_8g016270 73.148 648 157 3 4 650 17 648 0.0 984
MsG0180000535.01.T01 MTR_5g098730 44.560 671 301 15 18 650 28 665 8.13e-180 526
MsG0180000535.01.T01 MTR_3g082140 43.628 667 317 13 16 650 20 659 1.87e-178 522
MsG0180000535.01.T01 MTR_0204s0010 47.598 458 216 7 206 650 2 448 1.22e-147 436
MsG0180000535.01.T01 MTR_5g077170 32.536 627 357 10 30 650 25 591 4.09e-112 349
MsG0180000535.01.T01 MTR_6g074910 31.360 625 361 9 32 650 26 588 1.06e-108 340
MsG0180000535.01.T01 MTR_8g088730 32.385 633 348 10 30 650 25 589 1.43e-102 324
MsG0180000535.01.T01 MTR_2g006300 32.805 631 346 10 30 650 21 583 6.05e-100 317
MsG0180000535.01.T01 MTR_4g053270 29.469 621 368 10 34 648 31 587 2.07e-87 285
MsG0180000535.01.T01 MTR_7g060560 91.057 123 11 0 101 223 269 391 1.73e-71 236
MsG0180000535.01.T01 MTR_3g090510 93.750 112 7 0 112 223 283 394 7.81e-68 227
MsG0180000535.01.T01 MTR_5g014340 86.916 107 9 1 108 214 1 102 9.42e-49 171
MsG0180000535.01.T01 MTR_4g116770 37.931 203 100 6 9 208 9 188 2.43e-31 130
MsG0180000535.01.T01 MTR_0249s0060 89.706 68 7 0 108 175 1 68 4.64e-30 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000535.01.T01 AT5G10840 83.178 642 92 2 11 650 21 648 0.0 1093
MsG0180000535.01.T01 AT5G25100 82.143 644 97 2 11 650 15 644 0.0 1080
MsG0180000535.01.T01 AT5G25100 81.260 651 97 3 11 650 15 651 0.0 1075
MsG0180000535.01.T01 AT2G24170 78.495 651 125 2 1 650 1 637 0.0 1048
MsG0180000535.01.T01 AT3G13772 75.079 630 140 4 23 650 27 641 0.0 985
MsG0180000535.01.T01 AT1G55130 71.779 652 167 4 1 650 1 637 0.0 967
MsG0180000535.01.T01 AT2G24170 73.548 465 102 4 1 461 1 448 0.0 707
MsG0180000535.01.T01 AT5G35160 44.330 679 302 14 14 650 14 658 0.0 543
MsG0180000535.01.T01 AT5G35160 44.330 679 302 14 14 650 14 658 0.0 543
MsG0180000535.01.T01 AT5G35160 44.330 679 302 14 14 650 14 658 0.0 543
MsG0180000535.01.T01 AT4G12650 43.899 672 315 15 13 650 9 652 2.57e-173 509
MsG0180000535.01.T01 AT5G35160 42.183 678 290 14 14 650 14 630 7.87e-169 496
MsG0180000535.01.T01 AT2G01970 32.974 649 360 11 14 650 7 592 9.92e-120 369
MsG0180000535.01.T01 AT1G14670 32.772 653 362 11 10 650 5 592 1.55e-111 348
MsG0180000535.01.T01 AT5G37310 32.159 653 359 11 13 650 10 593 3.24e-109 342
MsG0180000535.01.T01 AT5G37310 32.159 653 359 11 13 650 10 593 3.24e-109 342
MsG0180000535.01.T01 AT1G10950 32.964 631 345 10 30 650 27 589 1.86e-100 319
MsG0180000535.01.T01 AT1G08350 30.414 628 367 12 30 650 25 589 3.17e-97 310
MsG0180000535.01.T01 AT1G08350 30.414 628 367 12 30 650 25 589 3.17e-97 310
MsG0180000535.01.T01 AT1G08350 30.616 552 328 10 105 650 6 508 8.39e-86 278
MsG0180000535.01.T01 AT1G08350 29.585 578 324 12 30 598 25 528 4.67e-83 271

Find 165 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTTGGCTTCCTCTTTC+TGG 0.064189 1:+7528694 MsG0180000535.01.T01:CDS
ATCCTGATCCACACGCTTTA+TGG 0.119105 1:-7527073 None:intergenic
TCTCTTCTTGTGCTTCTTCT+TGG 0.188485 1:-7528049 None:intergenic
TTCATGTACCACGCTTGTTC+AGG 0.250510 1:-7528569 None:intergenic
TTGTATTGAATGGTCTGATA+TGG 0.253856 1:+7528384 MsG0180000535.01.T01:CDS
CAATTGAGAACCAGTGAATT+TGG 0.264042 1:-7527926 None:intergenic
CTCTTCTTGTGCTTCTTCTT+GGG 0.281012 1:-7528048 None:intergenic
ACCATTCAATACAAAGAAAA+TGG 0.292510 1:-7528375 None:intergenic
GCTTTGAGGTTAAGCCATTC+AGG 0.304144 1:+7527329 MsG0180000535.01.T01:CDS
AACCTCAAAGCCCACTATTC+TGG 0.312174 1:-7527317 None:intergenic
AACATGAATATGAAGGGAAA+TGG 0.333966 1:+7527456 MsG0180000535.01.T01:CDS
TTTCTCACAGAATTACAAAT+TGG 0.336039 1:+7529261 MsG0180000535.01.T01:three_prime_UTR
TTGGTGGCTATGTTGGATTC+AGG 0.340881 1:+7528495 MsG0180000535.01.T01:CDS
TCTTCATTCTCACCTCAATC+TGG 0.353616 1:+7528654 MsG0180000535.01.T01:CDS
CACATATGATGTTGAATTCC+TGG 0.357055 1:+7527580 MsG0180000535.01.T01:CDS
CTTGTTCAGGGATCTGCCTT+GGG 0.361865 1:-7528556 None:intergenic
TTCAACTTCTTGAGGAGTAT+TGG 0.372089 1:-7527537 None:intergenic
CACACAACATTGCACATTTG+TGG 0.372808 1:-7526851 None:intergenic
ACAATGCTCTTTGCTGTCCT+TGG 0.391461 1:+7528179 MsG0180000535.01.T01:CDS
TATGCCTTCTTTGTTGTAAC+CGG 0.395161 1:+7528938 MsG0180000535.01.T01:CDS
TCATCTGGAGCTGTGCCATT+TGG 0.398656 1:+7528416 MsG0180000535.01.T01:CDS
GATGATTGTCCTCTTTCTCT+CGG 0.399152 1:+7527959 MsG0180000535.01.T01:CDS
GTATGATTAAAATTTCATAA+TGG 0.405569 1:+7529438 MsG0180000535.01.T01:three_prime_UTR
GATTCTAGATAACCTTCCTT+TGG 0.407859 1:+7527044 MsG0180000535.01.T01:CDS
TCCCATAAAGCGTGTGGATC+AGG 0.408601 1:+7527071 MsG0180000535.01.T01:CDS
CACTGAATCTGCCAGAATAG+TGG 0.409116 1:+7527306 MsG0180000535.01.T01:CDS
TCCTGATCCACACGCTTTAT+GGG 0.409906 1:-7527072 None:intergenic
TTGTGTGTTTATGTTGGTAC+TGG 0.410260 1:+7528128 MsG0180000535.01.T01:CDS
CCGGCCTTCTCAGTTCTGAT+AGG 0.413755 1:+7528593 MsG0180000535.01.T01:CDS
CAACTTCGTGATTTCAAGCT+TGG 0.416283 1:-7528873 None:intergenic
TGAATTTCAAAATCCTTTCA+CGG 0.418947 1:-7529091 None:intergenic
TATTGAAAATTCACGTTATG+TGG 0.420978 1:+7526713 MsG0180000535.01.T01:CDS
GATTCTACTGTTTATCAGCT+TGG 0.421408 1:+7527093 MsG0180000535.01.T01:CDS
CATTCTTTAGGAAGTATCAT+AGG 0.422680 1:-7529060 None:intergenic
CTTCTTCTTCTCTTCATCAA+TGG 0.423367 1:+7524716 MsG0180000535.01.T01:CDS
AGTAATCCTCACTGCACAAC+TGG 0.425366 1:-7528772 None:intergenic
ACATGAATATGAAGGGAAAT+GGG 0.426030 1:+7527457 MsG0180000535.01.T01:CDS
ATTAGCCCACCTCTGTTTGA+AGG 0.427160 1:-7528212 None:intergenic
GCTTGTTCAGGGATCTGCCT+TGG 0.428645 1:-7528557 None:intergenic
TGCCAGAATAGTGGGCTTTG+AGG 0.438212 1:+7527315 MsG0180000535.01.T01:CDS
CACAACAGATCTGAGTTGTT+TGG 0.439121 1:-7528110 None:intergenic
ACTCATGACAGCTAGTGGTC+TGG 0.446796 1:+7529032 MsG0180000535.01.T01:three_prime_UTR
TTGGATAGTGCTGAAAATCT+TGG 0.448087 1:+7526669 MsG0180000535.01.T01:CDS
TGTATTGAATGGTCTGATAT+GGG 0.449462 1:+7528385 MsG0180000535.01.T01:CDS
AATTCAAAATTGTATAGAAT+AGG 0.452259 1:-7529143 None:intergenic
TTTGTTGTAACCGGCACCAT+TGG 0.456580 1:+7528947 MsG0180000535.01.T01:CDS
GGAAGTGAATAATATGTGTA+TGG 0.459005 1:-7526624 None:intergenic
ATATGGGGACAAAAGTCATC+TGG 0.459129 1:+7528401 MsG0180000535.01.T01:CDS
CTCATGACAGCTAGTGGTCT+GGG 0.459389 1:+7529033 MsG0180000535.01.T01:three_prime_UTR
TATCAGCTTGGTTTCCATGT+TGG 0.460613 1:+7527105 MsG0180000535.01.T01:CDS
CGGCCTTCTCAGTTCTGATA+GGG 0.462225 1:+7528594 MsG0180000535.01.T01:CDS
GTCATCATTCATCAGCAGAT+AGG 0.462860 1:-7527904 None:intergenic
TGTCCTCTTTCTCTCGGGCA+TGG 0.464468 1:+7527965 MsG0180000535.01.T01:CDS
ATGATTGTCCTCTTTCTCTC+GGG 0.466449 1:+7527960 MsG0180000535.01.T01:CDS
AGCTTCTGTTTCTATCTCCC+CGG 0.475077 1:+7524740 MsG0180000535.01.T01:CDS
CTTATCTGAACTTGATAACT+CGG 0.475184 1:-7529211 None:intergenic
AATAATATGTGTATGGAAGC+TGG 0.475548 1:-7526617 None:intergenic
TGGCGCTCTTACCTCACATC+TGG 0.475574 1:+7528803 MsG0180000535.01.T01:CDS
TTTCCCTCTTCAACTTCTTG+AGG 0.477051 1:-7527545 None:intergenic
CAATGTAATAAAACATGGAT+TGG 0.478361 1:+7529416 MsG0180000535.01.T01:three_prime_UTR
TCAATGAAAACAGCTCCAAA+TGG 0.478934 1:-7528626 None:intergenic
GAAGATTGATGATGAGTATC+GGG 0.480629 1:+7526916 MsG0180000535.01.T01:CDS
GACAGCTATGCTCTTGCTAT+GGG 0.482841 1:+7528235 MsG0180000535.01.T01:CDS
TGCTAATGCTAATAAACAAA+AGG 0.483272 1:-7529395 None:intergenic
AAAATGGCAGAGACAGAGGC+AGG 0.487505 1:-7528359 None:intergenic
CGAGTTATCAAGTTCAGATA+AGG 0.489035 1:+7529212 MsG0180000535.01.T01:three_prime_UTR
GGTTTCCATGTTGGACTCAA+AGG 0.490497 1:+7527114 MsG0180000535.01.T01:CDS
TGACAGCTATGCTCTTGCTA+TGG 0.490539 1:+7528234 MsG0180000535.01.T01:CDS
TCATGTACCACGCTTGTTCA+GGG 0.491346 1:-7528568 None:intergenic
AGAATGTTGCATAAAGAAAG+AGG 0.493377 1:-7528841 None:intergenic
TCTCCCCGGTGTTGCACCAC+AGG 0.496049 1:+7524754 MsG0180000535.01.T01:CDS
CCACCATGCCCGAGAGAAAG+AGG 0.498120 1:-7527968 None:intergenic
CTTTCTCCTTCAAACAGAGG+TGG 0.502130 1:+7528206 MsG0180000535.01.T01:CDS
GATCTGTTGTGTGTTTATGT+TGG 0.504784 1:+7528122 MsG0180000535.01.T01:CDS
AAATCCTGTGGTGCAACACC+GGG 0.504830 1:-7524758 None:intergenic
CACCTCTGTTTGAAGGAGAA+AGG 0.505594 1:-7528205 None:intergenic
GACAACTGTATGTTTAGCAT+GGG 0.507896 1:-7527510 None:intergenic
GGACTCAAAGGACAATATAG+TGG 0.508903 1:+7527126 MsG0180000535.01.T01:CDS
GAAATCCTGTGGTGCAACAC+CGG 0.509595 1:-7524759 None:intergenic
CAATGAAAACAGCTCCAAAT+GGG 0.511643 1:-7528625 None:intergenic
AGTGTTAAACATGAATATGA+AGG 0.511795 1:+7527449 MsG0180000535.01.T01:intron
AGAAGATTGATGATGAGTAT+CGG 0.514607 1:+7526915 MsG0180000535.01.T01:CDS
CGCTTTATGGGAACAACCAA+AGG 0.515207 1:-7527060 None:intergenic
CTATCTCAAACGCTACGCTA+TGG 0.519907 1:+7524661 MsG0180000535.01.T01:exon
TTTCATAATGGTGAGGCTGT+TGG 0.520407 1:+7529450 MsG0180000535.01.T01:three_prime_UTR
AGAGCAAACATTGTTCCAAA+TGG 0.527819 1:-7528431 None:intergenic
ATGATACTTCCTAAAGAATG+AGG 0.528724 1:+7529063 MsG0180000535.01.T01:three_prime_UTR
CCTATCAGAACTGAGAAGGC+CGG 0.533053 1:-7528593 None:intergenic
TTTCTCCTTCAAACAGAGGT+GGG 0.533866 1:+7528207 MsG0180000535.01.T01:CDS
CTATCAGAACTGAGAAGGCC+GGG 0.534233 1:-7528592 None:intergenic
TGCACCACAGGATTTCCAAA+AGG 0.534989 1:+7524766 MsG0180000535.01.T01:CDS
GACTCAAAGGACAATATAGT+GGG 0.535283 1:+7527127 MsG0180000535.01.T01:CDS
AAGCACAAGAAGAGACTGGT+TGG 0.539709 1:+7528057 MsG0180000535.01.T01:CDS
TGCGTAAAATCCAATGGTGC+CGG 0.543229 1:-7528957 None:intergenic
TCAAGAAGTTGAAGAGGGAA+AGG 0.543806 1:+7527547 MsG0180000535.01.T01:CDS
GTATCTGCAATATTATACTT+CGG 0.545739 1:+7528896 MsG0180000535.01.T01:CDS
TGACAACTGTATGTTTAGCA+TGG 0.550993 1:-7527511 None:intergenic
ACTGAATCTGCCAGAATAGT+GGG 0.555697 1:+7527307 MsG0180000535.01.T01:CDS
ATTTGACAGTAAATGCCAAA+TGG 0.557238 1:-7527267 None:intergenic
GGTTGTTCCCATAAAGCGTG+TGG 0.557317 1:+7527065 MsG0180000535.01.T01:CDS
CATTGTACTTTGAAATATCA+CGG 0.557682 1:-7528016 None:intergenic
AACAGATCTGAGTTGTTTGG+TGG 0.557705 1:-7528107 None:intergenic
GGATGACGAAGACCAGAAAG+AGG 0.558905 1:-7528706 None:intergenic
CGCTTATACAAAATGTTCAA+AGG 0.560242 1:+7528293 MsG0180000535.01.T01:CDS
ATGTGAAGTGGGCTTCAAGA+TGG 0.563049 1:+7527877 MsG0180000535.01.T01:CDS
AGATAAGGTACTCTGCGCTC+TGG 0.564240 1:+7529227 MsG0180000535.01.T01:three_prime_UTR
GAAGAAGCACAAGAAGAGAC+TGG 0.567424 1:+7528053 MsG0180000535.01.T01:CDS
AAACTGATTCAACCAGATTG+AGG 0.568595 1:-7528666 None:intergenic
TTCCTTTCTCCTTCAAACAG+AGG 0.571385 1:+7528203 MsG0180000535.01.T01:CDS
TACTCCTCAAGAAGTTGAAG+AGG 0.574236 1:+7527541 MsG0180000535.01.T01:CDS
ATTAAAATTTCATAATGGTG+AGG 0.578726 1:+7529443 MsG0180000535.01.T01:three_prime_UTR
CAAGCTTGAAATCACGAAGT+TGG 0.580482 1:+7528874 MsG0180000535.01.T01:CDS
GAATGAGGAAAATCCGTGAA+AGG 0.581689 1:+7529078 MsG0180000535.01.T01:three_prime_UTR
GTGAGGATTACTTGTGGTGG+TGG 0.581791 1:+7528783 MsG0180000535.01.T01:CDS
ATGTTGAAACAAAAGAATAA+CGG 0.589051 1:-7529175 None:intergenic
AAGAATTGAAGAGAACGCGA+TGG 0.589318 1:-7524696 None:intergenic
AGTGGAAGAAAATTTCCCTC+AGG 0.592786 1:+7528321 MsG0180000535.01.T01:CDS
CACAGACATACAGACCTGAA+TGG 0.593857 1:-7527343 None:intergenic
GAACAAGACTGCAGTCCTGA+GGG 0.595951 1:-7528336 None:intergenic
ATAATATGTGTATGGAAGCT+GGG 0.597147 1:-7526616 None:intergenic
GTGAGGCTGTTGGCTCCACT+AGG 0.604637 1:+7529460 MsG0180000535.01.T01:three_prime_UTR
AAAGAAAATGGCAGAGACAG+AGG 0.604759 1:-7528363 None:intergenic
ACAACTGTATGTTTAGCATG+GGG 0.606268 1:-7527509 None:intergenic
TGTGAAGTGGGCTTCAAGAT+GGG 0.611136 1:+7527878 MsG0180000535.01.T01:CDS
GCCTTCTCAGTTCTGATAGG+GGG 0.611204 1:+7528596 MsG0180000535.01.T01:CDS
GTGTTAAACATGAATATGAA+GGG 0.614070 1:+7527450 MsG0180000535.01.T01:intron
GTCTAAATATTGATACCTAG+TGG 0.614679 1:-7529475 None:intergenic
GGCCTTCTCAGTTCTGATAG+GGG 0.615040 1:+7528595 MsG0180000535.01.T01:CDS
TTATCTGAACTTGATAACTC+GGG 0.616627 1:-7529210 None:intergenic
CTACTTCCAGTTGTGCAGTG+AGG 0.617050 1:+7528766 MsG0180000535.01.T01:CDS
TTGAAGGAGAAAGGAATCCA+AGG 0.617531 1:-7528196 None:intergenic
GGTGCCGGTTACAACAAAGA+AGG 0.620039 1:-7528942 None:intergenic
TTATGGGAACAACCAAAGGA+AGG 0.622552 1:-7527056 None:intergenic
ATTGTCCTTTGAGTCCAACA+TGG 0.625666 1:-7527119 None:intergenic
ACTCCTCAAGAAGTTGAAGA+GGG 0.626156 1:+7527542 MsG0180000535.01.T01:CDS
GATAGATAGATCTGTGTGTG+TGG 0.627285 1:-7524639 None:intergenic
TGCAGGAGAGTGATGTGAAG+TGG 0.630793 1:+7527865 MsG0180000535.01.T01:intron
TGAATGATGACCAAATTCAC+TGG 0.630891 1:+7527916 MsG0180000535.01.T01:CDS
AAAGCATGCGTAAAATCCAA+TGG 0.631715 1:-7528963 None:intergenic
GGAACAAGACTGCAGTCCTG+AGG 0.632360 1:-7528337 None:intergenic
CCTCTTTCTCTCGGGCATGG+TGG 0.636806 1:+7527968 MsG0180000535.01.T01:CDS
TGAAAACAAACAAAATCCCA+AGG 0.637171 1:+7528540 MsG0180000535.01.T01:CDS
GTATTGAATGGTCTGATATG+GGG 0.638197 1:+7528386 MsG0180000535.01.T01:CDS
GGCAGATCCCTGAACAAGCG+TGG 0.641948 1:+7528561 MsG0180000535.01.T01:CDS
ATTAGCAATGTAATAAAACA+TGG 0.642497 1:+7529411 MsG0180000535.01.T01:three_prime_UTR
GCAGGAGAGTGATGTGAAGT+GGG 0.642804 1:+7527866 MsG0180000535.01.T01:intron
ACTGGTTGGAAGCTTGTCCA+TGG 0.644200 1:+7528071 MsG0180000535.01.T01:CDS
ACAAGCGTGGTACATGAACC+CGG 0.649898 1:+7528574 MsG0180000535.01.T01:CDS
GCAGTGAGGATTACTTGTGG+TGG 0.656188 1:+7528780 MsG0180000535.01.T01:CDS
AAATGGCAGAGACAGAGGCA+GGG 0.659868 1:-7528358 None:intergenic
ATAGATAGATCTGTGTGTGT+GGG 0.660975 1:-7524638 None:intergenic
GTCACACTCATGACAGCTAG+TGG 0.665652 1:+7529027 MsG0180000535.01.T01:exon
TCATGACAGCTAGTGGTCTG+GGG 0.670437 1:+7529034 MsG0180000535.01.T01:three_prime_UTR
GTGCAGAAGAGCCAGATGTG+AGG 0.677656 1:-7528814 None:intergenic
AAATGTTCAAAGGATCAGAG+TGG 0.690463 1:+7528303 MsG0180000535.01.T01:CDS
TGTGCAGTGAGGATTACTTG+TGG 0.692738 1:+7528777 MsG0180000535.01.T01:CDS
CAACTGTATGTTTAGCATGG+GGG 0.696889 1:-7527508 None:intergenic
TTTCTGCACAAGTGATAACG+AGG 0.700675 1:-7528727 None:intergenic
TTGAAATACACAGAGCAAGG+AGG 0.723557 1:+7527225 MsG0180000535.01.T01:intron
AATCCTGTGGTGCAACACCG+GGG 0.726841 1:-7524757 None:intergenic
TGTGTGTAAGCTTAAAGTTG+AGG 0.748545 1:+7526868 MsG0180000535.01.T01:CDS
ACTCAAAGGACAATATAGTG+GGG 0.752368 1:+7527128 MsG0180000535.01.T01:CDS
AATTCTGTGAGAAATAACAC+AGG 0.757297 1:-7529252 None:intergenic
CTGGAAGTAGCAAAGCACGA+CGG 0.762251 1:-7528753 None:intergenic
AATCTTGGAGAAGTGCTCCG+TGG 0.794103 1:+7526684 MsG0180000535.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAACAATAACAAT+TGG - Chr1:7527793-7527812 None:intergenic 10.0%
!! AATTCAAAATTGTATAGAAT+AGG - Chr1:7529146-7529165 None:intergenic 15.0%
!! ATCTTATTAGAATTATTAGA+AGG - Chr1:7525543-7525562 None:intergenic 15.0%
!! GTATGATTAAAATTTCATAA+TGG + Chr1:7529438-7529457 MsG0180000535.01.T01:three_prime_UTR 15.0%
!!! TAATTAGAATGTTTAGTTTT+CGG + Chr1:7525103-7525122 MsG0180000535.01.T01:intron 15.0%
!!! TATTCTTCTCTAATTATTTT+TGG + Chr1:7527731-7527750 MsG0180000535.01.T01:intron 15.0%
!!! TGTAATTGTTTGAATTTTAT+TGG + Chr1:7524923-7524942 MsG0180000535.01.T01:intron 15.0%
!! AAAACTAAAGAGATAAATGA+AGG - Chr1:7526442-7526461 None:intergenic 20.0%
!! AAATTTGAATACAAGAAAGT+TGG - Chr1:7526483-7526502 None:intergenic 20.0%
!! AACTAAAAAAAACTCACTAA+CGG - Chr1:7525066-7525085 None:intergenic 20.0%
!! AATGATCTAAGAGTTATAAT+TGG + Chr1:7525375-7525394 MsG0180000535.01.T01:intron 20.0%
!! AATTTGAATACAAGAAAGTT+GGG - Chr1:7526482-7526501 None:intergenic 20.0%
!! ATGTTGAAACAAAAGAATAA+CGG - Chr1:7529178-7529197 None:intergenic 20.0%
!! ATTAAAATTTCATAATGGTG+AGG + Chr1:7529443-7529462 MsG0180000535.01.T01:three_prime_UTR 20.0%
!! ATTAGCAATGTAATAAAACA+TGG + Chr1:7529411-7529430 MsG0180000535.01.T01:three_prime_UTR 20.0%
!!! AACCTTATTTTTACTAGAAA+TGG - Chr1:7526162-7526181 None:intergenic 20.0%
!!! TAATTTATTTTATGATGCAG+AGG + Chr1:7525209-7525228 MsG0180000535.01.T01:intron 20.0%
!!! TACCATTTCTAGTAAAAATA+AGG + Chr1:7526157-7526176 MsG0180000535.01.T01:intron 20.0%
!!! TTTGTTGTTCAAAAAACAAA+AGG - Chr1:7525440-7525459 None:intergenic 20.0%
! AAACCATATATTTAACCACT+TGG - Chr1:7527673-7527692 None:intergenic 25.0%
! AAGTGGTTAAATATATGGTT+TGG + Chr1:7527672-7527691 MsG0180000535.01.T01:intron 25.0%
! ACCATTCAATACAAAGAAAA+TGG - Chr1:7528378-7528397 None:intergenic 25.0%
! AGATTTGTAGATTAGGATTT+AGG + Chr1:7525170-7525189 MsG0180000535.01.T01:intron 25.0%
! AGTGGTTAAATATATGGTTT+GGG + Chr1:7527673-7527692 MsG0180000535.01.T01:intron 25.0%
! AGTGTTAAACATGAATATGA+AGG + Chr1:7527449-7527468 MsG0180000535.01.T01:intron 25.0%
! CAATGTAATAAAACATGGAT+TGG + Chr1:7529416-7529435 MsG0180000535.01.T01:three_prime_UTR 25.0%
! CACAAGAAGAAGAAAAAAAT+TGG - Chr1:7527196-7527215 None:intergenic 25.0%
! GGAAATATAAGACAATTTAC+TGG - Chr1:7526959-7526978 None:intergenic 25.0%
! GTATCTGCAATATTATACTT+CGG + Chr1:7528896-7528915 MsG0180000535.01.T01:CDS 25.0%
! GTGTTAAACATGAATATGAA+GGG + Chr1:7527450-7527469 MsG0180000535.01.T01:intron 25.0%
! TAAATTGTCTTATATTTCCG+TGG + Chr1:7526960-7526979 MsG0180000535.01.T01:intron 25.0%
! TATTGAAAATTCACGTTATG+TGG + Chr1:7526713-7526732 MsG0180000535.01.T01:CDS 25.0%
! TGAATTTCAAAATCCTTTCA+CGG - Chr1:7529094-7529113 None:intergenic 25.0%
! TGCTAATGCTAATAAACAAA+AGG - Chr1:7529398-7529417 None:intergenic 25.0%
! TTAGTGAAAATACAAGTCAT+CGG - Chr1:7526216-7526235 None:intergenic 25.0%
! TTCAAATGTTGTTGTCATTA+TGG + Chr1:7525003-7525022 MsG0180000535.01.T01:intron 25.0%
! TTGACATTGCAAAATTGATT+TGG + Chr1:7526025-7526044 MsG0180000535.01.T01:intron 25.0%
! TTTCTCACAGAATTACAAAT+TGG + Chr1:7529261-7529280 MsG0180000535.01.T01:three_prime_UTR 25.0%
!! AATCAGTTTTACTACATCTT+TGG + Chr1:7528680-7528699 MsG0180000535.01.T01:CDS 25.0%
!! CTTTGAACATTTTGTATAAG+CGG - Chr1:7528295-7528314 None:intergenic 25.0%
!! TTGGTAAACATGGATTTTAA+TGG + Chr1:7526000-7526019 MsG0180000535.01.T01:intron 25.0%
!! TTTGAACATTTTGTATAAGC+GGG - Chr1:7528294-7528313 None:intergenic 25.0%
!! TTTTAATCAATGTTGTCAAG+TGG + Chr1:7525642-7525661 MsG0180000535.01.T01:intron 25.0%
!! TTTTAGACTGCAATATTACA+TGG + Chr1:7526542-7526561 MsG0180000535.01.T01:intron 25.0%
!!! ATTTTAGTGAAAGATGATGA+TGG + Chr1:7527808-7527827 MsG0180000535.01.T01:intron 25.0%
!!! CATTGTACTTTGAAATATCA+CGG - Chr1:7528019-7528038 None:intergenic 25.0%
!!! GAATTTTATTGGTGATGAAT+TGG + Chr1:7524934-7524953 MsG0180000535.01.T01:intron 25.0%
!!! GTTTAATTTTCATGCAATGT+CGG + Chr1:7525263-7525282 MsG0180000535.01.T01:intron 25.0%
!!! GTTTTTTATACACAACCATT+TGG + Chr1:7527252-7527271 MsG0180000535.01.T01:CDS 25.0%
!!! TATGCATTCTTACTGATTTT+CGG + Chr1:7527408-7527427 MsG0180000535.01.T01:intron 25.0%
!!! TTGAGAACTTTTTTGTAAGA+TGG + Chr1:7529339-7529358 MsG0180000535.01.T01:three_prime_UTR 25.0%
AACATGAATATGAAGGGAAA+TGG + Chr1:7527456-7527475 MsG0180000535.01.T01:CDS 30.0%
AACTTCTCATAGTCTTCATT+GGG + Chr1:7526261-7526280 MsG0180000535.01.T01:intron 30.0%
AATAATATGTGTATGGAAGC+TGG - Chr1:7526620-7526639 None:intergenic 30.0%
AATTCTGTGAGAAATAACAC+AGG - Chr1:7529255-7529274 None:intergenic 30.0%
ACATGAATATGAAGGGAAAT+GGG + Chr1:7527457-7527476 MsG0180000535.01.T01:CDS 30.0%
AGAATGTTGCATAAAGAAAG+AGG - Chr1:7528844-7528863 None:intergenic 30.0%
ATAATATGTGTATGGAAGCT+GGG - Chr1:7526619-7526638 None:intergenic 30.0%
ATGATACTTCCTAAAGAATG+AGG + Chr1:7529063-7529082 MsG0180000535.01.T01:three_prime_UTR 30.0%
ATGCCAAGTGGTTAAATATA+TGG + Chr1:7527667-7527686 MsG0180000535.01.T01:intron 30.0%
ATTTGACAGTAAATGCCAAA+TGG - Chr1:7527270-7527289 None:intergenic 30.0%
CAAATTATGCTTGTTTGGTT+TGG + Chr1:7525837-7525856 MsG0180000535.01.T01:intron 30.0%
CGCTTATACAAAATGTTCAA+AGG + Chr1:7528293-7528312 MsG0180000535.01.T01:CDS 30.0%
CTAAAATCACATTTGACACA+AGG + Chr1:7526232-7526251 MsG0180000535.01.T01:intron 30.0%
CTAAAATGTGCGAATGAAAT+CGG - Chr1:7524827-7524846 None:intergenic 30.0%
GACATGTTATTGTTAACACT+TGG + Chr1:7526748-7526767 MsG0180000535.01.T01:intron 30.0%
GATCTTCAATATCAAGATAG+TGG - Chr1:7526996-7527015 None:intergenic 30.0%
GGAAGTGAATAATATGTGTA+TGG - Chr1:7526627-7526646 None:intergenic 30.0%
GTCTAAATATTGATACCTAG+TGG - Chr1:7529478-7529497 None:intergenic 30.0%
TAACTTCTCATAGTCTTCAT+TGG + Chr1:7526260-7526279 MsG0180000535.01.T01:intron 30.0%
TACTACGTTTGAATACCTAT+TGG + Chr1:7527637-7527656 MsG0180000535.01.T01:intron 30.0%
TGAAAACAAACAAAATCCCA+AGG + Chr1:7528540-7528559 MsG0180000535.01.T01:CDS 30.0%
TGCATCAAATTATGCTTGTT+TGG + Chr1:7525832-7525851 MsG0180000535.01.T01:intron 30.0%
TGTATTGAATGGTCTGATAT+GGG + Chr1:7528385-7528404 MsG0180000535.01.T01:CDS 30.0%
TTGTATTGAATGGTCTGATA+TGG + Chr1:7528384-7528403 MsG0180000535.01.T01:CDS 30.0%
TTTATTAAGATGATCTCACC+AGG - Chr1:7527601-7527620 None:intergenic 30.0%
! AATTTTCAATACGATCACCA+CGG - Chr1:7526704-7526723 None:intergenic 30.0%
! CTTATCTGAACTTGATAACT+CGG - Chr1:7529214-7529233 None:intergenic 30.0%
! GGTAAAAAGTTTTACACTCT+CGG + Chr1:7525290-7525309 MsG0180000535.01.T01:intron 30.0%
! TAGGATTTAGGAGTATGAAT+CGG + Chr1:7525182-7525201 MsG0180000535.01.T01:intron 30.0%
! TCTTTTGCCTACATGTATTT+GGG + Chr1:7525969-7525988 MsG0180000535.01.T01:intron 30.0%
! TGTTTGCTCTGATCTTTTTA+TGG + Chr1:7528444-7528463 MsG0180000535.01.T01:CDS 30.0%
! TTATCTGAACTTGATAACTC+GGG - Chr1:7529213-7529232 None:intergenic 30.0%
! TTCTTTTGCCTACATGTATT+TGG + Chr1:7525968-7525987 MsG0180000535.01.T01:intron 30.0%
! TTGAAATGAAACGAACCTTT+TGG - Chr1:7524784-7524803 None:intergenic 30.0%
! TTTGAATGCTTTTGCAGTTT+TGG - Chr1:7526894-7526913 None:intergenic 30.0%
!! AGAAGATTGATGATGAGTAT+CGG + Chr1:7526915-7526934 MsG0180000535.01.T01:CDS 30.0%
!! CATTCTTTAGGAAGTATCAT+AGG - Chr1:7529063-7529082 None:intergenic 30.0%
!! GCCATTTTCTTTGTATTGAA+TGG + Chr1:7528374-7528393 MsG0180000535.01.T01:CDS 30.0%
!! TAGAAAGTGTTGTCAATTAG+AGG + Chr1:7525721-7525740 MsG0180000535.01.T01:intron 30.0%
!!! ACTATCCAAGATTTTTTCTG+GGG - Chr1:7526658-7526677 None:intergenic 30.0%
!!! CACTATCCAAGATTTTTTCT+GGG - Chr1:7526659-7526678 None:intergenic 30.0%
!!! GTGAAAGGATTTTGAAATTC+AGG + Chr1:7529093-7529112 MsG0180000535.01.T01:three_prime_UTR 30.0%
AAAGCATGCGTAAAATCCAA+TGG - Chr1:7528966-7528985 None:intergenic 35.0%
AAATGTTCAAAGGATCAGAG+TGG + Chr1:7528303-7528322 MsG0180000535.01.T01:CDS 35.0%
AACGAGTAAACTGTAGTGTT+CGG - Chr1:7526290-7526309 None:intergenic 35.0%
ACAAACCATGGCTAAAATAG+TGG - Chr1:7525890-7525909 None:intergenic 35.0%
ACAACTGTATGTTTAGCATG+GGG - Chr1:7527512-7527531 None:intergenic 35.0%
ACTCAAAGGACAATATAGTG+GGG + Chr1:7527128-7527147 MsG0180000535.01.T01:CDS 35.0%
AGAGCAAACATTGTTCCAAA+TGG - Chr1:7528434-7528453 None:intergenic 35.0%
AGGCCAGAAAACTTTATTGT+AGG - Chr1:7526422-7526441 None:intergenic 35.0%
ATAGATAGATCTGTGTGTGT+GGG - Chr1:7524641-7524660 None:intergenic 35.0%
ATGTCAAACTAGCATTCTTC+AGG - Chr1:7526097-7526116 None:intergenic 35.0%
ATGTTGAAATACACAGAGCA+AGG + Chr1:7527222-7527241 MsG0180000535.01.T01:intron 35.0%
CAATTGAGAACCAGTGAATT+TGG - Chr1:7527929-7527948 None:intergenic 35.0%
CACATATGATGTTGAATTCC+TGG + Chr1:7527580-7527599 MsG0180000535.01.T01:CDS 35.0%
CAGTAGGAGATTTGTAGATT+AGG + Chr1:7525163-7525182 MsG0180000535.01.T01:intron 35.0%
CAGTTTACTCGTTCAATTTG+AGG + Chr1:7526297-7526316 MsG0180000535.01.T01:intron 35.0%
CCAGAAAACTTTATTGTAGG+TGG - Chr1:7526419-7526438 None:intergenic 35.0%
CGAGTTATCAAGTTCAGATA+AGG + Chr1:7529212-7529231 MsG0180000535.01.T01:three_prime_UTR 35.0%
CTTCTTCTTCTCTTCATCAA+TGG + Chr1:7524716-7524735 MsG0180000535.01.T01:CDS 35.0%
GACAACTGTATGTTTAGCAT+GGG - Chr1:7527513-7527532 None:intergenic 35.0%
GACTCAAAGGACAATATAGT+GGG + Chr1:7527127-7527146 MsG0180000535.01.T01:CDS 35.0%
GATCTGTTGTGTGTTTATGT+TGG + Chr1:7528122-7528141 MsG0180000535.01.T01:CDS 35.0%
GATTCTACTGTTTATCAGCT+TGG + Chr1:7527093-7527112 MsG0180000535.01.T01:CDS 35.0%
GATTCTAGATAACCTTCCTT+TGG + Chr1:7527044-7527063 MsG0180000535.01.T01:CDS 35.0%
GTATTGAATGGTCTGATATG+GGG + Chr1:7528386-7528405 MsG0180000535.01.T01:CDS 35.0%
TAGAGGATATAGCTACTGTA+GGG + Chr1:7525738-7525757 MsG0180000535.01.T01:intron 35.0%
TCAATGAAAACAGCTCCAAA+TGG - Chr1:7528629-7528648 None:intergenic 35.0%
TGAATGATGACCAAATTCAC+TGG + Chr1:7527916-7527935 MsG0180000535.01.T01:CDS 35.0%
TGACAACTGTATGTTTAGCA+TGG - Chr1:7527514-7527533 None:intergenic 35.0%
TGTCAAACTAGCATTCTTCA+GGG - Chr1:7526096-7526115 None:intergenic 35.0%
TGTGTGTAAGCTTAAAGTTG+AGG + Chr1:7526868-7526887 MsG0180000535.01.T01:CDS 35.0%
TGTTATTGTTAACACTTGGC+TGG + Chr1:7526752-7526771 MsG0180000535.01.T01:intron 35.0%
TTAGAGGATATAGCTACTGT+AGG + Chr1:7525737-7525756 MsG0180000535.01.T01:intron 35.0%
TTGTGTGTTTATGTTGGTAC+TGG + Chr1:7528128-7528147 MsG0180000535.01.T01:CDS 35.0%
! AAACTGATTCAACCAGATTG+AGG - Chr1:7528669-7528688 None:intergenic 35.0%
! ACGGATTTTCCTCATTCTTT+AGG - Chr1:7529075-7529094 None:intergenic 35.0%
! CCACCTACAATAAAGTTTTC+TGG + Chr1:7526416-7526435 MsG0180000535.01.T01:intron 35.0%
! CGATTTCATTCGCACATTTT+AGG + Chr1:7524825-7524844 MsG0180000535.01.T01:intron 35.0%
! GCTCTGATCTTTTTATGGTT+TGG + Chr1:7528449-7528468 MsG0180000535.01.T01:CDS 35.0%
! GGTGTTTGAAATGTAACAGT+AGG + Chr1:7525147-7525166 MsG0180000535.01.T01:intron 35.0%
! GGTTAAATATATGGTTTGGG+CGG + Chr1:7527676-7527695 MsG0180000535.01.T01:intron 35.0%
! TATGCCTTCTTTGTTGTAAC+CGG + Chr1:7528938-7528957 MsG0180000535.01.T01:CDS 35.0%
! TTCAACTTCTTGAGGAGTAT+TGG - Chr1:7527540-7527559 None:intergenic 35.0%
! TTCACAGGATTTTCAATTGC+AGG - Chr1:7528524-7528543 None:intergenic 35.0%
! TTGGATAGTGCTGAAAATCT+TGG + Chr1:7526669-7526688 MsG0180000535.01.T01:CDS 35.0%
! TTGGATTTTACGCATGCTTT+TGG + Chr1:7528966-7528985 MsG0180000535.01.T01:CDS 35.0%
!! GAAGATTGATGATGAGTATC+GGG + Chr1:7526916-7526935 MsG0180000535.01.T01:CDS 35.0%
!! GGGATTTTGTTTGTTTTCAC+AGG - Chr1:7528539-7528558 None:intergenic 35.0%
!! TTGTCCATGGTGATGTTTTT+AGG + Chr1:7528084-7528103 MsG0180000535.01.T01:CDS 35.0%
!!! ACTATTTTAGCCATGGTTTG+TGG + Chr1:7525889-7525908 MsG0180000535.01.T01:intron 35.0%
!!! ATTTTTTCTGGGGGACAATA+AGG - Chr1:7526648-7526667 None:intergenic 35.0%
!!! CTATCCAAGATTTTTTCTGG+GGG - Chr1:7526657-7526676 None:intergenic 35.0%
!!! GCACTATCCAAGATTTTTTC+TGG - Chr1:7526660-7526679 None:intergenic 35.0%
!!! GTACTGGTGTTCAGTTTTTT+GGG + Chr1:7528144-7528163 MsG0180000535.01.T01:CDS 35.0%
!!! TCAGTTCCACTTGTTTTTGT+TGG + Chr1:7528476-7528495 MsG0180000535.01.T01:CDS 35.0%
AAAGAAAATGGCAGAGACAG+AGG - Chr1:7528366-7528385 None:intergenic 40.0%
AACAGATCTGAGTTGTTTGG+TGG - Chr1:7528110-7528129 None:intergenic 40.0%
AACATCACCTCGGAAAATAC+AGG - Chr1:7526394-7526413 None:intergenic 40.0%
AAGAATTGAAGAGAACGCGA+TGG - Chr1:7524699-7524718 None:intergenic 40.0%
ACAAGAAAGTTGGGACTCAA+GGG - Chr1:7526473-7526492 None:intergenic 40.0%
ACATCACCTCGGAAAATACA+GGG - Chr1:7526393-7526412 None:intergenic 40.0%
ACTCCTCAAGAAGTTGAAGA+GGG + Chr1:7527542-7527561 MsG0180000535.01.T01:CDS 40.0%
ACTGAATCTGCCAGAATAGT+GGG + Chr1:7527307-7527326 MsG0180000535.01.T01:CDS 40.0%
ACTGCAATATTACATGGTGC+AGG + Chr1:7526548-7526567 MsG0180000535.01.T01:intron 40.0%
AGTGGAAGAAAATTTCCCTC+AGG + Chr1:7528321-7528340 MsG0180000535.01.T01:CDS 40.0%
ATAGTACTTAGCCCACAAGA+CGG + Chr1:7525488-7525507 MsG0180000535.01.T01:intron 40.0%
ATAGTGGCAGAAAATAGCCA+CGG - Chr1:7526980-7526999 None:intergenic 40.0%
ATATGGGGACAAAAGTCATC+TGG + Chr1:7528401-7528420 MsG0180000535.01.T01:CDS 40.0%
ATGATTGTCCTCTTTCTCTC+GGG + Chr1:7527960-7527979 MsG0180000535.01.T01:CDS 40.0%
ATTGTCCTTTGAGTCCAACA+TGG - Chr1:7527122-7527141 None:intergenic 40.0%
CAACTGTATGTTTAGCATGG+GGG - Chr1:7527511-7527530 None:intergenic 40.0%
CAACTTCGTGATTTCAAGCT+TGG - Chr1:7528876-7528895 None:intergenic 40.0%
CAAGCTTGAAATCACGAAGT+TGG + Chr1:7528874-7528893 MsG0180000535.01.T01:CDS 40.0%
CACAACAGATCTGAGTTGTT+TGG - Chr1:7528113-7528132 None:intergenic 40.0%
CACACAACATTGCACATTTG+TGG - Chr1:7526854-7526873 None:intergenic 40.0%
CTCTTCTTGTGCTTCTTCTT+GGG - Chr1:7528051-7528070 None:intergenic 40.0%
CTGCAATATTACATGGTGCA+GGG + Chr1:7526549-7526568 MsG0180000535.01.T01:intron 40.0%
GAATGAGGAAAATCCGTGAA+AGG + Chr1:7529078-7529097 MsG0180000535.01.T01:three_prime_UTR 40.0%
GATAATTGTGTTGTGGTCAG+TGG + Chr1:7526774-7526793 MsG0180000535.01.T01:intron 40.0%
GATAGATAGATCTGTGTGTG+TGG - Chr1:7524642-7524661 None:intergenic 40.0%
GATGATTGTCCTCTTTCTCT+CGG + Chr1:7527959-7527978 MsG0180000535.01.T01:CDS 40.0%
GGACTCAAAGGACAATATAG+TGG + Chr1:7527126-7527145 MsG0180000535.01.T01:CDS 40.0%
GTAAGAATGCATACCACAAC+TGG - Chr1:7527401-7527420 None:intergenic 40.0%
GTCATCATTCATCAGCAGAT+AGG - Chr1:7527907-7527926 None:intergenic 40.0%
TACAAGAAAGTTGGGACTCA+AGG - Chr1:7526474-7526493 None:intergenic 40.0%
TACTCCTCAAGAAGTTGAAG+AGG + Chr1:7527541-7527560 MsG0180000535.01.T01:CDS 40.0%
TAGCCACCAACAAAAACAAG+TGG - Chr1:7528485-7528504 None:intergenic 40.0%
TATCAGCTTGGTTTCCATGT+TGG + Chr1:7527105-7527124 MsG0180000535.01.T01:CDS 40.0%
TCAAGAAGTTGAAGAGGGAA+AGG + Chr1:7527547-7527566 MsG0180000535.01.T01:CDS 40.0%
TCTCTTCTTGTGCTTCTTCT+TGG - Chr1:7528052-7528071 None:intergenic 40.0%
TCTTCATTCTCACCTCAATC+TGG + Chr1:7528654-7528673 MsG0180000535.01.T01:CDS 40.0%
TTATGGGAACAACCAAAGGA+AGG - Chr1:7527059-7527078 None:intergenic 40.0%
TTCCTTTCTCCTTCAAACAG+AGG + Chr1:7528203-7528222 MsG0180000535.01.T01:CDS 40.0%
TTGAAATACACAGAGCAAGG+AGG + Chr1:7527225-7527244 MsG0180000535.01.T01:intron 40.0%
TTGAAGGAGAAAGGAATCCA+AGG - Chr1:7528199-7528218 None:intergenic 40.0%
TTGGCTGGATAATTGTGTTG+TGG + Chr1:7526767-7526786 MsG0180000535.01.T01:intron 40.0%
TTGTCCCCCAGAAAAAATCT+TGG + Chr1:7526650-7526669 MsG0180000535.01.T01:CDS 40.0%
TTTCATAATGGTGAGGCTGT+TGG + Chr1:7529450-7529469 MsG0180000535.01.T01:three_prime_UTR 40.0%
TTTCCCTCTTCAACTTCTTG+AGG - Chr1:7527548-7527567 None:intergenic 40.0%
TTTCTCCTTCAAACAGAGGT+GGG + Chr1:7528207-7528226 MsG0180000535.01.T01:CDS 40.0%
! ATGTATTTGGGCGAGCATTT+TGG + Chr1:7525981-7526000 MsG0180000535.01.T01:intron 40.0%
! ATTTTCATGCAATGTCGGTG+TGG + Chr1:7525268-7525287 MsG0180000535.01.T01:intron 40.0%
! CATGTGTGTGACTTTGAAAG+TGG + Chr1:7525328-7525347 MsG0180000535.01.T01:intron 40.0%
! CGTTCAATTTGAGGTTTCTG+TGG + Chr1:7526306-7526325 MsG0180000535.01.T01:intron 40.0%
! GTTTTCATGGGGATTTTTGC+TGG + Chr1:7528257-7528276 MsG0180000535.01.T01:CDS 40.0%
! TCTAGAATCCTGCACATAGA+AGG - Chr1:7527033-7527052 None:intergenic 40.0%
! TTTCTGCACAAGTGATAACG+AGG - Chr1:7528730-7528749 None:intergenic 40.0%
! TTTTCATGCAATGTCGGTGT+GGG + Chr1:7525269-7525288 MsG0180000535.01.T01:intron 40.0%
!! CTCTTGCTATGGGTTTTCAT+GGG + Chr1:7528245-7528264 MsG0180000535.01.T01:CDS 40.0%
!! TCTTGCTATGGGTTTTCATG+GGG + Chr1:7528246-7528265 MsG0180000535.01.T01:CDS 40.0%
!!! GAATGTTTAGTTTTCGGCTG+TGG + Chr1:7525109-7525128 MsG0180000535.01.T01:intron 40.0%
!!! GGTACTGGTGTTCAGTTTTT+TGG + Chr1:7528143-7528162 MsG0180000535.01.T01:CDS 40.0%
!!! GTTCCACTTGTTTTTGTTGG+TGG + Chr1:7528479-7528498 MsG0180000535.01.T01:CDS 40.0%
!!! GTTTTTGTTGGTGGCTATGT+TGG + Chr1:7528488-7528507 MsG0180000535.01.T01:CDS 40.0%
!!! TTCTGCCACTATTTTAGCCA+TGG + Chr1:7525882-7525901 MsG0180000535.01.T01:intron 40.0%
AACCTCAAAGCCCACTATTC+TGG - Chr1:7527320-7527339 None:intergenic 45.0%
AAGCACAAGAAGAGACTGGT+TGG + Chr1:7528057-7528076 MsG0180000535.01.T01:CDS 45.0%
AGTAATCCTCACTGCACAAC+TGG - Chr1:7528775-7528794 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG - Chr1:7527076-7527095 None:intergenic 45.0%
ATCCTGCACATAGAAGGTAG+AGG - Chr1:7527027-7527046 None:intergenic 45.0%
ATGCTCGCCCAAATACATGT+AGG - Chr1:7525979-7525998 None:intergenic 45.0%
ATTAGCCCACCTCTGTTTGA+AGG - Chr1:7528215-7528234 None:intergenic 45.0%
ATTTACCTCTGCCTACTTGC+AGG + Chr1:7527848-7527867 MsG0180000535.01.T01:intron 45.0%
CACAGACATACAGACCTGAA+TGG - Chr1:7527346-7527365 None:intergenic 45.0%
CACCTCTGTTTGAAGGAGAA+AGG - Chr1:7528208-7528227 None:intergenic 45.0%
CACTGAATCTGCCAGAATAG+TGG + Chr1:7527306-7527325 MsG0180000535.01.T01:CDS 45.0%
CGCTTTATGGGAACAACCAA+AGG - Chr1:7527063-7527082 None:intergenic 45.0%
CTATCTCAAACGCTACGCTA+TGG + Chr1:7524661-7524680 MsG0180000535.01.T01:exon 45.0%
CTGTCAATCACAGAACAACG+AGG - Chr1:7525933-7525952 None:intergenic 45.0%
CTTGGCATATGCAAGCCAAT+AGG - Chr1:7527655-7527674 None:intergenic 45.0%
CTTTCTCCTTCAAACAGAGG+TGG + Chr1:7528206-7528225 MsG0180000535.01.T01:CDS 45.0%
GACGTAAAAGCCACAAACCA+TGG - Chr1:7525902-7525921 None:intergenic 45.0%
GGTTTCCATGTTGGACTCAA+AGG + Chr1:7527114-7527133 MsG0180000535.01.T01:CDS 45.0%
GTAGGTGGTTAACATCACCT+CGG - Chr1:7526404-7526423 None:intergenic 45.0%
GTGGCCTAAAAACATCACCA+TGG - Chr1:7528091-7528110 None:intergenic 45.0%
TAGTACTTAGCCCACAAGAC+GGG + Chr1:7525489-7525508 MsG0180000535.01.T01:intron 45.0%
TCAGTCTGTCAAACCAGTTG+TGG + Chr1:7527385-7527404 MsG0180000535.01.T01:intron 45.0%
TCATGTACCACGCTTGTTCA+GGG - Chr1:7528571-7528590 None:intergenic 45.0%
TCCTGATCCACACGCTTTAT+GGG - Chr1:7527075-7527094 None:intergenic 45.0%
TGACAGCTATGCTCTTGCTA+TGG + Chr1:7528234-7528253 MsG0180000535.01.T01:CDS 45.0%
TGCAAGTAGGCAGAGGTAAA+TGG - Chr1:7527849-7527868 None:intergenic 45.0%
TGCACCACAGGATTTCCAAA+AGG + Chr1:7524766-7524785 MsG0180000535.01.T01:CDS 45.0%
TGCGTAAAATCCAATGGTGC+CGG - Chr1:7528960-7528979 None:intergenic 45.0%
TGTGCAGTGAGGATTACTTG+TGG + Chr1:7528777-7528796 MsG0180000535.01.T01:CDS 45.0%
TTCATGTACCACGCTTGTTC+AGG - Chr1:7528572-7528591 None:intergenic 45.0%
! ACAAGACGGGAAAAGTACAC+GGG + Chr1:7525502-7525521 MsG0180000535.01.T01:intron 45.0%
! ACAATGCTCTTTGCTGTCCT+TGG + Chr1:7528179-7528198 MsG0180000535.01.T01:CDS 45.0%
! ATGTGAAGTGGGCTTCAAGA+TGG + Chr1:7527877-7527896 MsG0180000535.01.T01:CDS 45.0%
! CACAAGACGGGAAAAGTACA+CGG + Chr1:7525501-7525520 MsG0180000535.01.T01:intron 45.0%
! CATCTTTGGCTTCCTCTTTC+TGG + Chr1:7528694-7528713 MsG0180000535.01.T01:CDS 45.0%
! GAAGAAGCACAAGAAGAGAC+TGG + Chr1:7528053-7528072 MsG0180000535.01.T01:CDS 45.0%
! GACAGCTATGCTCTTGCTAT+GGG + Chr1:7528235-7528254 MsG0180000535.01.T01:CDS 45.0%
! GTGTACTTTTCCCGTCTTGT+GGG - Chr1:7525502-7525521 None:intergenic 45.0%
! TGTGAAGTGGGCTTCAAGAT+GGG + Chr1:7527878-7527897 MsG0180000535.01.T01:CDS 45.0%
! TTGGTGGCTATGTTGGATTC+AGG + Chr1:7528495-7528514 MsG0180000535.01.T01:CDS 45.0%
! TTTGTTGTAACCGGCACCAT+TGG + Chr1:7528947-7528966 MsG0180000535.01.T01:CDS 45.0%
!! AGCTTCTGTTTCTATCTCCC+CGG + Chr1:7524740-7524759 MsG0180000535.01.T01:CDS 45.0%
!! ATTGGCTTGCATATGCCAAG+TGG + Chr1:7527655-7527674 MsG0180000535.01.T01:intron 45.0%
!! CGAACCTTTTGGAAATCCTG+TGG - Chr1:7524773-7524792 None:intergenic 45.0%
!! GAGTATCGGGTGAACATGTA+CGG + Chr1:7526929-7526948 MsG0180000535.01.T01:intron 45.0%
!! GCTCTTGCTATGGGTTTTCA+TGG + Chr1:7528244-7528263 MsG0180000535.01.T01:CDS 45.0%
!! GCTTTGAGGTTAAGCCATTC+AGG + Chr1:7527329-7527348 MsG0180000535.01.T01:CDS 45.0%
!! GGCGAGCATTTTGGTAAACA+TGG + Chr1:7525990-7526009 MsG0180000535.01.T01:intron 45.0%
!!! ACGCATGCTTTTGGTTCACA+AGG + Chr1:7528975-7528994 MsG0180000535.01.T01:CDS 45.0%
AAAATGGCAGAGACAGAGGC+AGG - Chr1:7528362-7528381 None:intergenic 50.0%
AAATCCTGTGGTGCAACACC+GGG - Chr1:7524761-7524780 None:intergenic 50.0%
AAATGGCAGAGACAGAGGCA+GGG - Chr1:7528361-7528380 None:intergenic 50.0%
ACAAGCGTGGTACATGAACC+CGG + Chr1:7528574-7528593 MsG0180000535.01.T01:CDS 50.0%
ACTCATGACAGCTAGTGGTC+TGG + Chr1:7529032-7529051 MsG0180000535.01.T01:three_prime_UTR 50.0%
ACTGGTTGGAAGCTTGTCCA+TGG + Chr1:7528071-7528090 MsG0180000535.01.T01:CDS 50.0%
ATGTTTAGCATGGGGGTCAC+AGG - Chr1:7527504-7527523 None:intergenic 50.0%
CACATCACTCTCCTGCAAGT+AGG - Chr1:7527862-7527881 None:intergenic 50.0%
CCTATCAGAACTGAGAAGGC+CGG - Chr1:7528596-7528615 None:intergenic 50.0%
CTACTTCCAGTTGTGCAGTG+AGG + Chr1:7528766-7528785 MsG0180000535.01.T01:CDS 50.0%
CTATCAGAACTGAGAAGGCC+GGG - Chr1:7528595-7528614 None:intergenic 50.0%
CTCATGACAGCTAGTGGTCT+GGG + Chr1:7529033-7529052 MsG0180000535.01.T01:three_prime_UTR 50.0%
CTGGAAGTAGCAAAGCACGA+CGG - Chr1:7528756-7528775 None:intergenic 50.0%
CTGTGGATGCATGTGATGTG+AGG + Chr1:7525126-7525145 MsG0180000535.01.T01:intron 50.0%
CTTGTTCAGGGATCTGCCTT+GGG - Chr1:7528559-7528578 None:intergenic 50.0%
GAAAGTTGGGACTCAAGGGT+AGG - Chr1:7526469-7526488 None:intergenic 50.0%
GAAATCCTGTGGTGCAACAC+CGG - Chr1:7524762-7524781 None:intergenic 50.0%
GAACAAGACTGCAGTCCTGA+GGG - Chr1:7528339-7528358 None:intergenic 50.0%
GCAGGAGAGTGATGTGAAGT+GGG + Chr1:7527866-7527885 MsG0180000535.01.T01:intron 50.0%
GCAGTGAGGATTACTTGTGG+TGG + Chr1:7528780-7528799 MsG0180000535.01.T01:CDS 50.0%
GGATGACGAAGACCAGAAAG+AGG - Chr1:7528709-7528728 None:intergenic 50.0%
GGGTAGTCGAGTGAATGTGA+CGG - Chr1:7526373-7526392 None:intergenic 50.0%
GGTTGTTCCCATAAAGCGTG+TGG + Chr1:7527065-7527084 MsG0180000535.01.T01:CDS 50.0%
GTCACACTCATGACAGCTAG+TGG + Chr1:7529027-7529046 MsG0180000535.01.T01:exon 50.0%
GTGAGGATTACTTGTGGTGG+TGG + Chr1:7528783-7528802 MsG0180000535.01.T01:CDS 50.0%
TCATGACAGCTAGTGGTCTG+GGG + Chr1:7529034-7529053 MsG0180000535.01.T01:three_prime_UTR 50.0%
TCCCATAAAGCGTGTGGATC+AGG + Chr1:7527071-7527090 MsG0180000535.01.T01:CDS 50.0%
TCCCCCTATCAGAACTGAGA+AGG - Chr1:7528600-7528619 None:intergenic 50.0%
TGCAGGAGAGTGATGTGAAG+TGG + Chr1:7527865-7527884 MsG0180000535.01.T01:intron 50.0%
TGCCTCTACCTTCTATGTGC+AGG + Chr1:7527022-7527041 MsG0180000535.01.T01:intron 50.0%
! AGATAAGGTACTCTGCGCTC+TGG + Chr1:7529227-7529246 MsG0180000535.01.T01:three_prime_UTR 50.0%
! CAAGACGGGAAAAGTACACG+GGG + Chr1:7525503-7525522 MsG0180000535.01.T01:intron 50.0%
! CGACTACCCTGTATTTTCCG+AGG + Chr1:7526384-7526403 MsG0180000535.01.T01:intron 50.0%
! CGGCCTTCTCAGTTCTGATA+GGG + Chr1:7528594-7528613 MsG0180000535.01.T01:CDS 50.0%
! CGTGTACTTTTCCCGTCTTG+TGG - Chr1:7525503-7525522 None:intergenic 50.0%
! GCCTTCTCAGTTCTGATAGG+GGG + Chr1:7528596-7528615 MsG0180000535.01.T01:CDS 50.0%
! GGCCTTCTCAGTTCTGATAG+GGG + Chr1:7528595-7528614 MsG0180000535.01.T01:CDS 50.0%
! TCATCTGGAGCTGTGCCATT+TGG + Chr1:7528416-7528435 MsG0180000535.01.T01:CDS 50.0%
!! AATCTTGGAGAAGTGCTCCG+TGG + Chr1:7526684-7526703 MsG0180000535.01.T01:CDS 50.0%
!! GGTGCCGGTTACAACAAAGA+AGG - Chr1:7528945-7528964 None:intergenic 50.0%
!! TGCCAGAATAGTGGGCTTTG+AGG + Chr1:7527315-7527334 MsG0180000535.01.T01:CDS 50.0%
AATCCTGTGGTGCAACACCG+GGG - Chr1:7524760-7524779 None:intergenic 55.0%
ACTCTCCTGCAAGTAGGCAG+AGG - Chr1:7527856-7527875 None:intergenic 55.0%
GCTTGTTCAGGGATCTGCCT+TGG - Chr1:7528560-7528579 None:intergenic 55.0%
GGAACAAGACTGCAGTCCTG+AGG - Chr1:7528340-7528359 None:intergenic 55.0%
GTGCAGAAGAGCCAGATGTG+AGG - Chr1:7528817-7528836 None:intergenic 55.0%
TGGCGCTCTTACCTCACATC+TGG + Chr1:7528803-7528822 MsG0180000535.01.T01:CDS 55.0%
TGTCCTCTTTCTCTCGGGCA+TGG + Chr1:7527965-7527984 MsG0180000535.01.T01:CDS 55.0%
! CCGGCCTTCTCAGTTCTGAT+AGG + Chr1:7528593-7528612 MsG0180000535.01.T01:CDS 55.0%
CCACCATGCCCGAGAGAAAG+AGG - Chr1:7527971-7527990 None:intergenic 60.0%
CCTCTTTCTCTCGGGCATGG+TGG + Chr1:7527968-7527987 MsG0180000535.01.T01:CDS 60.0%
GGCAGATCCCTGAACAAGCG+TGG + Chr1:7528561-7528580 MsG0180000535.01.T01:CDS 60.0%
!! GTGAGGCTGTTGGCTCCACT+AGG + Chr1:7529460-7529479 MsG0180000535.01.T01:three_prime_UTR 60.0%
!! TCTCCCCGGTGTTGCACCAC+AGG + Chr1:7524754-7524773 MsG0180000535.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 7524626 7529521 7524626 ID=MsG0180000535.01;Name=MsG0180000535.01
Chr1 mRNA 7524626 7529521 7524626 ID=MsG0180000535.01.T01;Parent=MsG0180000535.01;Name=MsG0180000535.01.T01;_AED=0.35;_eAED=0.35;_QI=54|0.83|0.85|1|1|1|7|494|650
Chr1 exon 7527870 7529521 7527870 ID=MsG0180000535.01.T01:exon:2283;Parent=MsG0180000535.01.T01
Chr1 exon 7527451 7527601 7527451 ID=MsG0180000535.01.T01:exon:2282;Parent=MsG0180000535.01.T01
Chr1 exon 7527238 7527350 7527238 ID=MsG0180000535.01.T01:exon:2281;Parent=MsG0180000535.01.T01
Chr1 exon 7527044 7527149 7527044 ID=MsG0180000535.01.T01:exon:2280;Parent=MsG0180000535.01.T01
Chr1 exon 7526794 7526945 7526794 ID=MsG0180000535.01.T01:exon:2279;Parent=MsG0180000535.01.T01
Chr1 exon 7526570 7526734 7526570 ID=MsG0180000535.01.T01:exon:2278;Parent=MsG0180000535.01.T01
Chr1 exon 7524626 7524787 7524626 ID=MsG0180000535.01.T01:exon:2277;Parent=MsG0180000535.01.T01
Chr1 five_prime_UTR 7524626 7524679 7524626 ID=MsG0180000535.01.T01:five_prime_utr;Parent=MsG0180000535.01.T01
Chr1 CDS 7524680 7524787 7524680 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7526570 7526734 7526570 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7526794 7526945 7526794 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7527044 7527149 7527044 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7527238 7527350 7527238 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7527451 7527601 7527451 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 CDS 7527870 7529027 7527870 ID=MsG0180000535.01.T01:cds;Parent=MsG0180000535.01.T01
Chr1 three_prime_UTR 7529028 7529521 7529028 ID=MsG0180000535.01.T01:three_prime_utr;Parent=MsG0180000535.01.T01
Gene Sequence

>MsG0180000535.01.T01

ATGGCGTTTTCGAGATCCATCGCGTTCTCTTCAATTCTTCTTCTTCTCTTCATCAATGGTAGCTTCTGTTTCTATCTCCCCGGTGTTGCACCACAGGATTTCCAAAAGGGAGATACATTGCAAGTGAAAGTAAACAAATTATCTTCAACAAAGACCCAGCTTCCATACACATATTATTCACTTCCTTATTGTCCCCCAGAAAAAATCTTGGATAGTGCTGAAAATCTTGGAGAAGTGCTCCGTGGTGATCGTATTGAAAATTCACGTTATGTGTGGTTATCAACTGATTTGCTCTACTCTCTGACATATTTGCAGTTCAAAATGCGCGAACCACAAATGTGCAATGTTGTGTGTAAGCTTAAAGTTGAGGCCAAAACTGCAAAAGCATTCAAAGAGAAGATTGATGATGAGTATCGGGTGAACATGATTCTAGATAACCTTCCTTTGGTTGTTCCCATAAAGCGTGTGGATCAGGATTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGACAATATAGTGGGAGCAAGGAGGAGAAGTTTTTTATACACAACCATTTGGCATTTACTGTCAAATATCATAGAGATTCACTCACTGAATCTGCCAGAATAGTGGGCTTTGAGGTTAAGCCATTCAGTGTTAAACATGAATATGAAGGGAAATGGGATGAAAAGACTCGCTTATCAACCTGTGACCCCCATGCTAAACATACAGTTGTCAACTCCAATACTCCTCAAGAAGTTGAAGAGGGAAAGGAAATCATCTTCACATATGATGTTGAATTCCTGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATCTGCTGATGAATGATGACCAAATTCACTGGTTCTCAATTGTGAACTCATTGATGATTGTCCTCTTTCTCTCGGGCATGGTGGCAATGATTATGCTGCGTACACTTTACCGTGATATTTCAAAGTACAATGAGCTTGAGACCCAAGAAGAAGCACAAGAAGAGACTGGTTGGAAGCTTGTCCATGGTGATGTTTTTAGGCCACCAAACAACTCAGATCTGTTGTGTGTTTATGTTGGTACTGGTGTTCAGTTTTTTGGGATGATACTAGTAACAATGCTCTTTGCTGTCCTTGGATTCCTTTCTCCTTCAAACAGAGGTGGGCTAATGACAGCTATGCTCTTGCTATGGGTTTTCATGGGGATTTTTGCTGGTTATGCATCAGCCCGCTTATACAAAATGTTCAAAGGATCAGAGTGGAAGAAAATTTCCCTCAGGACTGCAGTCTTGTTCCCTGCCTCTGTCTCTGCCATTTTCTTTGTATTGAATGGTCTGATATGGGGACAAAAGTCATCTGGAGCTGTGCCATTTGGAACAATGTTTGCTCTGATCTTTTTATGGTTTGGAATCTCAGTTCCACTTGTTTTTGTTGGTGGCTATGTTGGATTCAGGAAACCTGCAATTGAAAATCCTGTGAAAACAAACAAAATCCCAAGGCAGATCCCTGAACAAGCGTGGTACATGAACCCGGCCTTCTCAGTTCTGATAGGGGGAATACTCCCATTTGGAGCTGTTTTCATTGAGCTGTTCTTCATTCTCACCTCAATCTGGTTGAATCAGTTTTACTACATCTTTGGCTTCCTCTTTCTGGTCTTCGTCATCCTCGTTATCACTTGTGCAGAAATAACCGTCGTGCTTTGCTACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGCTCTTACCTCACATCTGGCTCTTCTGCACTATACCTCTTTCTTTATGCAACATTCTACTTCTTCACCAAGCTTGAAATCACGAAGTTGGTATCTGCAATATTATACTTCGGTTACATGTTTATAGCTTCATATGCCTTCTTTGTTGTAACCGGCACCATTGGATTTTACGCATGCTTTTGGTTCACAAGGCTCATTTACTCATCAGTCAAAATTGATTAG
Protein sequence

>MsG0180000535.01.T01

MAFSRSIAFSSILLLLFINGSFCFYLPGVAPQDFQKGDTLQVKVNKLSSTKTQLPYTYYSLPYCPPEKILDSAENLGEVLRGDRIENSRYVWLSTDLLYSLTYLQFKMREPQMCNVVCKLKVEAKTAKAFKEKIDDEYRVNMILDNLPLVVPIKRVDQDSTVYQLGFHVGLKGQYSGSKEEKFFIHNHLAFTVKYHRDSLTESARIVGFEVKPFSVKHEYEGKWDEKTRLSTCDPHAKHTVVNSNTPQEVEEGKEIIFTYDVEFLESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMLFAVLGFLSPSNRGGLMTAMLLLWVFMGIFAGYASARLYKMFKGSEWKKISLRTAVLFPASVSAIFFVLNGLIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGGYVGFRKPAIENPVKTNKIPRQIPEQAWYMNPAFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILVITCAEITVVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAILYFGYMFIASYAFFVVTGTIGFYACFWFTRLIYSSVKID*