Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018845.01.T01 | XP_003604816.1 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0 | 945 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018845.01.T01 | P29501 | 97.763 | 447 | 10 | 0 | 3 | 449 | 1 | 447 | 0 | 928 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018845.01.T01 | G7JRA0 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000360.01 | MsG0480018845.01 | 0.827226 | 1.758180e-54 | 1.686906e-51 |
| MsG0180003820.01 | MsG0480018845.01 | 0.817280 | 3.578501e-52 | 2.594679e-49 |
| MsG0180005024.01 | MsG0480018845.01 | 0.800696 | 1.276970e-48 | 5.984761e-46 |
| MsG0180005188.01 | MsG0480018845.01 | 0.809409 | 1.919544e-50 | 1.126203e-47 |
| MsG0180006260.01 | MsG0480018845.01 | 0.856868 | 2.404471e-62 | 5.820528e-59 |
| MsG0280010632.01 | MsG0480018845.01 | 0.813319 | 2.718219e-51 | 1.769371e-48 |
| MsG0280010977.01 | MsG0480018845.01 | 0.802571 | 5.266124e-49 | 2.588287e-46 |
| MsG0480018845.01 | MsG0480018846.01 | 0.888315 | 6.582999e-73 | 5.075364e-69 |
| MsG0480018845.01 | MsG0480020965.01 | 0.808414 | 3.133912e-50 | 1.790778e-47 |
| MsG0480018845.01 | MsG0480021013.01 | 0.831832 | 1.334753e-55 | 1.465629e-52 |
| MsG0480018845.01 | MsG0480021156.01 | 0.814643 | 1.387679e-51 | 9.363132e-49 |
| MsG0480018845.01 | MsG0480021225.01 | 0.815561 | 8.679925e-52 | 6.004642e-49 |
| MsG0480018845.01 | MsG0480022228.01 | 0.815852 | 7.474790e-52 | 5.212009e-49 |
| MsG0480018845.01 | MsG0480023053.01 | 0.809974 | 1.450951e-50 | 8.640619e-48 |
| MsG0480018845.01 | MsG0480023296.01 | 0.804086 | 2.557009e-49 | 1.306545e-46 |
| MsG0480018845.01 | MsG0480023500.01 | 0.807188 | 5.709201e-50 | 3.159356e-47 |
| MsG0480018845.01 | MsG0480023620.01 | 0.882850 | 7.367352e-71 | 4.560461e-67 |
| MsG0480018845.01 | MsG0480023671.01 | 0.806706 | 7.222345e-50 | 3.946958e-47 |
| MsG0480018845.01 | MsG0480023808.01 | 0.808230 | 3.429992e-50 | 1.950527e-47 |
| MsG0480018845.01 | MsG0580024489.01 | 0.802048 | 6.750069e-49 | 3.273805e-46 |
| MsG0480018845.01 | MsG0780039654.01 | 0.813148 | 2.963685e-51 | 1.920077e-48 |
| MsG0480018845.01 | MsG0780039655.01 | 0.806858 | 6.704987e-50 | 3.678856e-47 |
| MsG0480018845.01 | MsG0780039817.01 | 0.826073 | 3.313906e-54 | 3.075573e-51 |
| MsG0480018845.01 | MsG0780040079.01 | 0.805823 | 1.108125e-49 | 5.920991e-47 |
| MsG0480018845.01 | MsG0780040586.01 | 0.831521 | 1.592361e-55 | 1.732304e-52 |
| MsG0480018845.01 | MsG0880042836.01 | 0.826069 | 3.320767e-54 | 3.081625e-51 |
| MsG0480018845.01 | MsG0880042845.01 | 0.835933 | 1.257316e-56 | 1.560483e-53 |
| MsG0480018845.01 | MsG0880043516.01 | 0.807525 | 4.845434e-50 | 2.704935e-47 |
| MsG0480018845.01 | MsG0880045838.01 | 0.809112 | 2.222955e-50 | 1.293865e-47 |
| MsG0480018845.01 | MsG0880047226.01 | 0.822079 | 2.870171e-53 | 2.377682e-50 |
| MsG0380015548.01 | MsG0480018845.01 | 0.806840 | 6.766925e-50 | 3.711018e-47 |
| MsG0380016140.01 | MsG0480018845.01 | 0.816010 | 6.893945e-52 | 4.828128e-49 |
| MsG0380016994.01 | MsG0480018845.01 | 0.816946 | 4.253580e-52 | 3.056482e-49 |
| MsG0380017240.01 | MsG0480018845.01 | 0.812325 | 4.488457e-51 | 2.845186e-48 |
| MsG0380017836.01 | MsG0480018845.01 | 0.838223 | 3.267580e-57 | 4.347519e-54 |
| MsG0480018230.01 | MsG0480018845.01 | 0.819310 | 1.241995e-52 | 9.522748e-50 |
| MsG0280007761.01 | MsG0480018845.01 | 0.835210 | 1.916209e-56 | 2.327407e-53 |
| MsG0280009509.01 | MsG0480018845.01 | 0.823621 | 1.254872e-53 | 1.086137e-50 |
| MsG0280010001.01 | MsG0480018845.01 | 0.849953 | 2.322630e-60 | 4.478039e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041735.01 | MsG0480018845.01 | PPI |
| MsG0480022744.01 | MsG0480018845.01 | PPI |
| MsG0480018845.01 | MsG0380017708.01 | PPI |
| MsG0480018845.01 | MsG0280007740.01 | PPI |
| MsG0480018845.01 | MsG0180003802.01 | PPI |
| MsG0780040365.01 | MsG0480018845.01 | PPI |
| MsG0280007740.01 | MsG0480018845.01 | PPI |
| MsG0480018845.01 | MsG0480018846.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018845.01.T01 | MTR_4g019090 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
| MsG0480018845.01.T01 | MTR_4g019110 | 98.214 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
| MsG0480018845.01.T01 | MTR_1g101130 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 862 |
| MsG0480018845.01.T01 | MTR_7g089120 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| MsG0480018845.01.T01 | MTR_4g017630 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 846 |
| MsG0480018845.01.T01 | MTR_2g031310 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 846 |
| MsG0480018845.01.T01 | MTR_4g094535 | 94.651 | 430 | 23 | 0 | 1 | 430 | 1 | 430 | 0.0 | 838 |
| MsG0480018845.01.T01 | MTR_3g113970 | 92.361 | 432 | 31 | 1 | 1 | 430 | 1 | 432 | 0.0 | 823 |
| MsG0480018845.01.T01 | MTR_8g107250 | 89.955 | 448 | 39 | 2 | 1 | 447 | 1 | 443 | 0.0 | 823 |
| MsG0480018845.01.T01 | MTR_8g098360 | 90.930 | 430 | 39 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
| MsG0480018845.01.T01 | MTR_8g085980 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.01e-124 | 370 |
| MsG0480018845.01.T01 | MTR_3g110720 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 9.96e-124 | 367 |
| MsG0480018845.01.T01 | MTR_1g106005 | 41.242 | 451 | 252 | 3 | 1 | 441 | 1 | 448 | 2.25e-123 | 366 |
| MsG0480018845.01.T01 | MTR_7g085800 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 1.05e-122 | 365 |
| MsG0480018845.01.T01 | MTR_4g097830 | 41.324 | 438 | 239 | 3 | 1 | 424 | 1 | 434 | 1.33e-121 | 362 |
| MsG0480018845.01.T01 | MTR_6g029190 | 40.177 | 453 | 255 | 3 | 1 | 442 | 1 | 448 | 1.20e-120 | 359 |
| MsG0480018845.01.T01 | MTR_2g041670 | 37.199 | 457 | 273 | 5 | 1 | 449 | 1 | 451 | 5.63e-99 | 305 |
| MsG0480018845.01.T01 | MTR_7g117050 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 2.15e-96 | 298 |
| MsG0480018845.01.T01 | MTR_2g041400 | 37.089 | 426 | 257 | 3 | 1 | 418 | 1 | 423 | 5.34e-95 | 293 |
| MsG0480018845.01.T01 | MTR_3g063410 | 33.784 | 148 | 90 | 1 | 256 | 395 | 30 | 177 | 6.95e-28 | 110 |
| MsG0480018845.01.T01 | MTR_3g063410 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 7.39e-21 | 89.4 |
| MsG0480018845.01.T01 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 377 | 405 | 1 | 29 | 8.72e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018845.01.T01 | AT5G62700 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| MsG0480018845.01.T01 | AT5G62690 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| MsG0480018845.01.T01 | AT5G23860 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| MsG0480018845.01.T01 | AT5G23860 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| MsG0480018845.01.T01 | AT5G12250 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| MsG0480018845.01.T01 | AT2G29550 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 848 |
| MsG0480018845.01.T01 | AT1G75780 | 93.735 | 431 | 26 | 1 | 1 | 430 | 1 | 431 | 0.0 | 835 |
| MsG0480018845.01.T01 | AT1G20010 | 93.271 | 431 | 28 | 1 | 1 | 430 | 1 | 431 | 0.0 | 830 |
| MsG0480018845.01.T01 | AT4G20890 | 93.256 | 430 | 29 | 0 | 1 | 430 | 1 | 430 | 0.0 | 827 |
| MsG0480018845.01.T01 | AT5G44340 | 92.791 | 430 | 31 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| MsG0480018845.01.T01 | AT5G19780 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
| MsG0480018845.01.T01 | AT5G19770 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
| MsG0480018845.01.T01 | AT1G64740 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 3.30e-124 | 369 |
| MsG0480018845.01.T01 | AT4G14960 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.54e-122 | 364 |
| MsG0480018845.01.T01 | AT1G04820 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.93e-122 | 362 |
| MsG0480018845.01.T01 | AT1G50010 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.93e-122 | 362 |
| MsG0480018845.01.T01 | AT4G14960 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 5.67e-103 | 313 |
| MsG0480018845.01.T01 | AT5G05620 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 7.86e-97 | 299 |
| MsG0480018845.01.T01 | AT3G61650 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 1.10e-96 | 299 |
Find 141 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGAGGGTTTGAAAATT+AGG | 0.099538 | 4:+10547701 | None:intergenic |
| ACCAAATCGGAGCAAAATTC+TGG | 0.222809 | 4:-10547591 | MsG0480018845.01.T01:CDS |
| ACAGTTGATTTGACATTGTT+TGG | 0.282851 | 4:+10545615 | None:intergenic |
| TTGAAATTAGGGTTTGAAAA+TGG | 0.296491 | 4:+10547671 | None:intergenic |
| CGGAAACTCGACTTCAATTC+AGG | 0.306021 | 4:-10545547 | MsG0480018845.01.T01:CDS |
| AAGAGAGGGTTTGAAAATTA+GGG | 0.307640 | 4:+10547702 | None:intergenic |
| AGAGTGGTGCTGGGAATAAC+TGG | 0.308905 | 4:-10547351 | MsG0480018845.01.T01:CDS |
| GGATCTTGAACCGGGGACTA+TGG | 0.319517 | 4:-10547434 | MsG0480018845.01.T01:CDS |
| GCAGCTTAATTAAGCAACTT+TGG | 0.320395 | 4:+10545093 | None:intergenic |
| GTTTGGTTGAAATAGAATAA+AGG | 0.323957 | 4:+10545023 | None:intergenic |
| TTTGGTTGAAATAGAATAAA+GGG | 0.330470 | 4:+10545024 | None:intergenic |
| TGTGTGAAGAAATTGAAATT+AGG | 0.339422 | 4:+10547659 | None:intergenic |
| CAGCTTAATTAAGCAACTTT+GGG | 0.345575 | 4:+10545094 | None:intergenic |
| GTGTTTGGTCAGAGTGGTGC+TGG | 0.360890 | 4:-10547361 | MsG0480018845.01.T01:CDS |
| CACTTCTCATTTCAAAGATC+AGG | 0.366656 | 4:-10546321 | MsG0480018845.01.T01:CDS |
| TGAGAATTGTGATTGCTTGC+AGG | 0.369709 | 4:-10547260 | MsG0480018845.01.T01:CDS |
| GTGTGAAGAAATTGAAATTA+GGG | 0.375736 | 4:+10547660 | None:intergenic |
| AGCAGCACACATCATGTTCT+TGG | 0.381073 | 4:+10545764 | None:intergenic |
| GTGAGGTATCGTCCGTGTCT+AGG | 0.392730 | 4:+10545738 | None:intergenic |
| CTCCGATTTGGTTACCGCAT+TGG | 0.398686 | 4:+10547602 | None:intergenic |
| CTAGGTGGAGGAACTGGATC+TGG | 0.402050 | 4:-10546352 | MsG0480018845.01.T01:CDS |
| CACTGCTATGTTCAGGAGAA+AGG | 0.402943 | 4:-10545496 | MsG0480018845.01.T01:CDS |
| CGTTCCTCGTGCGATTCTGA+TGG | 0.410171 | 4:-10547455 | MsG0480018845.01.T01:CDS |
| GTTTGTGATATTCCACCAAC+AGG | 0.410840 | 4:-10545594 | MsG0480018845.01.T01:CDS |
| ATTCTGTTCTTGATGTTGTT+AGG | 0.411260 | 4:-10547291 | MsG0480018845.01.T01:CDS |
| TATCTGCAACTTCCTGTTGC+CGG | 0.413564 | 4:-10545268 | MsG0480018845.01.T01:three_prime_UTR |
| ACCACAGTGTCGGAAACCTT+TGG | 0.416018 | 4:+10546250 | None:intergenic |
| AAAGTAAGCATCATCCTGTC+TGG | 0.418443 | 4:+10546289 | None:intergenic |
| TATAAACTAGCTTACAGCTT+GGG | 0.426537 | 4:+10546110 | None:intergenic |
| CATTCACTAGGTGGAGGAAC+TGG | 0.427410 | 4:-10546358 | MsG0480018845.01.T01:CDS |
| AACAGATAAAGTAGCATTGT+AGG | 0.434815 | 4:+10546222 | None:intergenic |
| GGTTCGTAATCTCTGTTGTA+AGG | 0.435528 | 4:-10545247 | MsG0480018845.01.T01:three_prime_UTR |
| CACATTTGCTGTGTGAGCTC+TGG | 0.437594 | 4:+10545792 | None:intergenic |
| TTGATATCAGCTACCATGTC+TGG | 0.442320 | 4:-10545969 | MsG0480018845.01.T01:CDS |
| CGTGAGATTCTTCACATTCA+AGG | 0.442432 | 4:-10547628 | MsG0480018845.01.T01:CDS |
| AACAGTTCACTGCTATGTTC+AGG | 0.442593 | 4:-10545503 | MsG0480018845.01.T01:CDS |
| CAAGAGGTTCTCAGCAGTAC+CGG | 0.448911 | 4:-10545827 | MsG0480018845.01.T01:CDS |
| AGAGATTACGAACCGGCAAC+AGG | 0.449290 | 4:+10545256 | None:intergenic |
| GATTCTGATGGATCTTGAAC+CGG | 0.450792 | 4:-10547443 | MsG0480018845.01.T01:CDS |
| CACCTAGTGAATGACATACT+TGG | 0.458399 | 4:+10546368 | None:intergenic |
| GGTAGGGTCGATTCCATGTT+CGG | 0.466690 | 4:+10547555 | None:intergenic |
| CTGGGAATAACTGGGCTAAA+GGG | 0.468422 | 4:-10547342 | MsG0480018845.01.T01:CDS |
| ACATGTTGTTTGAGGTTCCC+TGG | 0.471364 | 4:-10545942 | MsG0480018845.01.T01:CDS |
| GGCCAATGCGGTAACCAAAT+CGG | 0.477508 | 4:-10547604 | MsG0480018845.01.T01:CDS |
| GGAGAAAGGCTTTCTTGCAT+TGG | 0.478824 | 4:-10545482 | MsG0480018845.01.T01:CDS |
| GGAGGAACTGGATCTGGAAT+GGG | 0.479696 | 4:-10546346 | MsG0480018845.01.T01:CDS |
| CTGTTTCTGTGTAACAATGT+TGG | 0.480892 | 4:-10545177 | MsG0480018845.01.T01:three_prime_UTR |
| TGGAGGAACTGGATCTGGAA+TGG | 0.483395 | 4:-10546347 | MsG0480018845.01.T01:CDS |
| CTGGTGTCACATGTTGTTTG+AGG | 0.483612 | 4:-10545950 | MsG0480018845.01.T01:CDS |
| GCTGGGAATAACTGGGCTAA+AGG | 0.483743 | 4:-10547343 | MsG0480018845.01.T01:CDS |
| GTCAAATACTAATGCAGAAG+TGG | 0.487070 | 4:-10545060 | MsG0480018845.01.T01:three_prime_UTR |
| GGATGAGTATGAAGATGAAG+AGG | 0.487277 | 4:-10545355 | MsG0480018845.01.T01:CDS |
| AGATCAGAGTTTAGCTGACC+AGG | 0.488565 | 4:+10545924 | None:intergenic |
| TGAGGTATCGTCCGTGTCTA+GGG | 0.489268 | 4:+10545739 | None:intergenic |
| CGGAGCAAAATTCTGGGAAG+TGG | 0.489877 | 4:-10547584 | MsG0480018845.01.T01:CDS |
| GGGTGGTAAGCTTGAGAGTA+CGG | 0.497426 | 4:+10546131 | None:intergenic |
| TGAGTATGAAGATGAAGAGG+AGG | 0.497865 | 4:-10545352 | MsG0480018845.01.T01:CDS |
| AAAATGGAAGAGAGAAAGAG+AGG | 0.499500 | 4:+10547687 | None:intergenic |
| TCCACCAACAGGGTTGAAGA+TGG | 0.506013 | 4:-10545583 | MsG0480018845.01.T01:CDS |
| CCAAATCGGAGCAAAATTCT+GGG | 0.506377 | 4:-10547590 | MsG0480018845.01.T01:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.506815 | 4:-10545474 | MsG0480018845.01.T01:CDS |
| TGAAAATGCAGATGAATGTA+TGG | 0.507784 | 4:-10546188 | MsG0480018845.01.T01:CDS |
| TTGCATTGGTACACTGGTGA+AGG | 0.510492 | 4:-10545468 | MsG0480018845.01.T01:CDS |
| TGACCAAACACAAAATTATC+CGG | 0.511815 | 4:+10547373 | None:intergenic |
| TGAACTGTTCACTCACCCTT+CGG | 0.513958 | 4:+10545517 | None:intergenic |
| ATTCTGATGGATCTTGAACC+GGG | 0.518607 | 4:-10547442 | MsG0480018845.01.T01:CDS |
| AAGATGGCTTCTACATTCAT+CGG | 0.521508 | 4:-10545567 | MsG0480018845.01.T01:CDS |
| GAATCGCACGAGGAACGAAC+CGG | 0.524358 | 4:+10547461 | None:intergenic |
| CAGAGCTCACACAGCAAATG+TGG | 0.526687 | 4:-10545791 | MsG0480018845.01.T01:CDS |
| GTTCGTAATCTCTGTTGTAA+GGG | 0.531633 | 4:-10545246 | MsG0480018845.01.T01:three_prime_UTR |
| GCCATCTTCAACCCTGTTGG+TGG | 0.532132 | 4:+10545582 | None:intergenic |
| AAGAGGTTCTCAGCAGTACC+GGG | 0.534007 | 4:-10545826 | MsG0480018845.01.T01:CDS |
| ACTATGGATAGTGTCCGGTC+TGG | 0.534394 | 4:-10547418 | MsG0480018845.01.T01:CDS |
| ACTCGTCCTACTTTGTCGAA+TGG | 0.535185 | 4:-10545641 | MsG0480018845.01.T01:CDS |
| GAAGTGGTTTGCGCCGAACA+TGG | 0.540201 | 4:-10547568 | MsG0480018845.01.T01:CDS |
| TTTGCACCTTTGACTTCAAG+AGG | 0.541243 | 4:-10545843 | MsG0480018845.01.T01:CDS |
| TGAAGAGGAGGATTATCAGC+AGG | 0.542245 | 4:-10545340 | MsG0480018845.01.T01:CDS |
| ACTTCTCATTTCAAAGATCA+GGG | 0.548263 | 4:-10546320 | MsG0480018845.01.T01:CDS |
| GTGTCGGAAACCTTTGGAGA+AGG | 0.548396 | 4:+10546256 | None:intergenic |
| ATCGACCCTACCGGACGCTA+CGG | 0.553152 | 4:-10547544 | MsG0480018845.01.T01:CDS |
| AAATGGAAGAGAGAAAGAGA+GGG | 0.554509 | 4:+10547688 | None:intergenic |
| GAGAATTGTGATTGCTTGCA+GGG | 0.561746 | 4:-10547259 | MsG0480018845.01.T01:intron |
| TTGGTACACTGGTGAAGGAA+TGG | 0.562019 | 4:-10545463 | MsG0480018845.01.T01:CDS |
| TGGAATCCATTCGACAAAGT+AGG | 0.564196 | 4:+10545635 | None:intergenic |
| TGTTTGGTCAGAGTGGTGCT+GGG | 0.566395 | 4:-10547360 | MsG0480018845.01.T01:CDS |
| TCAGGGAAGAATACCCAGAC+AGG | 0.570015 | 4:-10546303 | MsG0480018845.01.T01:CDS |
| CGGGGACTATGGATAGTGTC+CGG | 0.570224 | 4:-10547423 | MsG0480018845.01.T01:CDS |
| TGTCGGAAACCTTTGGAGAA+GGG | 0.570735 | 4:+10546257 | None:intergenic |
| AGAGGTACCACCGTAGCGTC+CGG | 0.571500 | 4:+10547534 | None:intergenic |
| AGTGTCCGGTCTGGACCGTA+CGG | 0.574566 | 4:-10547409 | MsG0480018845.01.T01:CDS |
| TTGGTTGAAATAGAATAAAG+GGG | 0.576122 | 4:+10545025 | None:intergenic |
| GAACATGGAATCGACCCTAC+CGG | 0.577600 | 4:-10547553 | MsG0480018845.01.T01:CDS |
| TACTACAACGAAGCTAGTTG+TGG | 0.580397 | 4:-10547484 | MsG0480018845.01.T01:CDS |
| TGAGAACCTCTTGAAGTCAA+AGG | 0.582877 | 4:+10545837 | None:intergenic |
| AAGTAAGCATCATCCTGTCT+GGG | 0.586190 | 4:+10546290 | None:intergenic |
| CAATTCAGGAAATGTTCCGA+AGG | 0.586545 | 4:-10545533 | MsG0480018845.01.T01:CDS |
| TCAAGATGCTACTGCAGAGG+AGG | 0.589411 | 4:-10545376 | MsG0480018845.01.T01:CDS |
| TTACAACAGAGATTACGAAC+CGG | 0.590375 | 4:+10545249 | None:intergenic |
| GAAGCCATCTTCAACCCTGT+TGG | 0.595148 | 4:+10545579 | None:intergenic |
| TCGCTCAAGTTGAAGTTCAG+AGG | 0.597388 | 4:+10547516 | None:intergenic |
| ACGGAAGCAAATATCATACA+AGG | 0.601543 | 4:+10546150 | None:intergenic |
| ACAGATAAAGTAGCATTGTA+GGG | 0.601899 | 4:+10546223 | None:intergenic |
| TGGTGAAGGAATGGATGAGA+TGG | 0.601920 | 4:-10545454 | MsG0480018845.01.T01:CDS |
| GCTAAAGGGCATTACACTGA+AGG | 0.603983 | 4:-10547328 | MsG0480018845.01.T01:CDS |
| ATAAACTAGCTTACAGCTTG+GGG | 0.606377 | 4:+10546111 | None:intergenic |
| TCTGACCGTACGGTCCAGAC+CGG | 0.610666 | 4:+10547404 | None:intergenic |
| ACTGCATCAGCCATCTTCAG+AGG | 0.610984 | 4:-10545717 | MsG0480018845.01.T01:CDS |
| CAAGTATGTCATTCACTAGG+TGG | 0.612941 | 4:-10546367 | MsG0480018845.01.T01:CDS |
| TTCTGATGGATCTTGAACCG+GGG | 0.614023 | 4:-10547441 | MsG0480018845.01.T01:CDS |
| TTCGTAATCTCTGTTGTAAG+GGG | 0.614198 | 4:-10545245 | MsG0480018845.01.T01:three_prime_UTR |
| CACATTCAAGGTGGCCAATG+CGG | 0.615773 | 4:-10547616 | MsG0480018845.01.T01:CDS |
| AACTAGCTTACAGCTTGGGG+TGG | 0.617330 | 4:+10546114 | None:intergenic |
| CAACATGAATGATCTTGTGT+CGG | 0.617924 | 4:-10545412 | MsG0480018845.01.T01:CDS |
| GTATGTCATTCACTAGGTGG+AGG | 0.621491 | 4:-10546364 | MsG0480018845.01.T01:CDS |
| GAGTGGTGCTGGGAATAACT+GGG | 0.622575 | 4:-10547350 | MsG0480018845.01.T01:CDS |
| TTCCAAGTATGTCATTCACT+AGG | 0.630377 | 4:-10546370 | MsG0480018845.01.T01:CDS |
| GTCAGCTAAACTCTGATCTG+AGG | 0.631991 | 4:-10545920 | MsG0480018845.01.T01:CDS |
| GTACCACCGTAGCGTCCGGT+AGG | 0.632327 | 4:+10547538 | None:intergenic |
| ACAACGAAGCTAGTTGTGGC+CGG | 0.636769 | 4:-10547480 | MsG0480018845.01.T01:CDS |
| GTACGGTCAGATCTTTAGAC+CGG | 0.637619 | 4:-10547392 | MsG0480018845.01.T01:CDS |
| ACATGGTAGCTGATATCAAG+TGG | 0.640117 | 4:+10545973 | None:intergenic |
| AATTCAGGAAATGTTCCGAA+GGG | 0.640149 | 4:-10545532 | MsG0480018845.01.T01:CDS |
| ATATCAAGATGCTACTGCAG+AGG | 0.642344 | 4:-10545379 | MsG0480018845.01.T01:CDS |
| TACCACCGTAGCGTCCGGTA+GGG | 0.643273 | 4:+10547539 | None:intergenic |
| TCCAAAGGTTTCCGACACTG+TGG | 0.648616 | 4:-10546251 | MsG0480018845.01.T01:CDS |
| TGGTTGAAATAGAATAAAGG+GGG | 0.650222 | 4:+10545026 | None:intergenic |
| TGAGATGGAGTTCACTGAGG+CGG | 0.651559 | 4:-10545439 | MsG0480018845.01.T01:CDS |
| GGTCTAAAGATCTGACCGTA+CGG | 0.651719 | 4:+10547394 | None:intergenic |
| GATCAGAGTTTAGCTGACCA+GGG | 0.652134 | 4:+10545925 | None:intergenic |
| GACCCTACCGGACGCTACGG+TGG | 0.654052 | 4:-10547541 | MsG0480018845.01.T01:CDS |
| GCTCTGGTACACTCAAAGCC+CGG | 0.656554 | 4:+10545808 | None:intergenic |
| GTAGGGTTCAACCACAGTGT+CGG | 0.658333 | 4:+10546240 | None:intergenic |
| CGGACACTATCCATAGTCCC+CGG | 0.661730 | 4:+10547424 | None:intergenic |
| TTTGTGATATTCCACCAACA+GGG | 0.665479 | 4:-10545593 | MsG0480018845.01.T01:CDS |
| AGAGCTCACACAGCAAATGT+GGG | 0.671631 | 4:-10545790 | MsG0480018845.01.T01:CDS |
| ACAACATGTGACACCAGACA+TGG | 0.683355 | 4:+10545956 | None:intergenic |
| AGATCCATCAGAATCGCACG+AGG | 0.702678 | 4:+10547451 | None:intergenic |
| GAGATTCTTCACATTCAAGG+TGG | 0.707839 | 4:-10547625 | MsG0480018845.01.T01:CDS |
| TGTGCTGCTGACCCTAGACA+CGG | 0.727199 | 4:-10545750 | MsG0480018845.01.T01:CDS |
| TGAAGATGGCTGATGCAGTG+AGG | 0.739156 | 4:+10545721 | None:intergenic |
| GGATGAGATGGAGTTCACTG+AGG | 0.753115 | 4:-10545442 | MsG0480018845.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTACTTGTTTT+TGG | - | Chr4:10545494-10545513 | MsG0480018845.01.T01:CDS | 10.0% |
| !! | AACAAACTTGAAAACATATA+TGG | + | Chr4:10546658-10546677 | None:intergenic | 20.0% |
| !! | TTGAGTTTACTATATGATAT+GGG | - | Chr4:10546232-10546251 | MsG0480018845.01.T01:CDS | 20.0% |
| !! | TTTGGTTGAAATAGAATAAA+GGG | + | Chr4:10547695-10547714 | None:intergenic | 20.0% |
| !! | TTTGTTACATTTGTTCAAAA+AGG | - | Chr4:10546672-10546691 | MsG0480018845.01.T01:intron | 20.0% |
| !!! | AAATTATTGAAGTGTTTGAT+TGG | - | Chr4:10545587-10545606 | MsG0480018845.01.T01:CDS | 20.0% |
| !!! | CAATAGATTTTAGTTTTGTT+TGG | + | Chr4:10547713-10547732 | None:intergenic | 20.0% |
| !!! | GGTATTTTTTTTATGTAAGA+GGG | - | Chr4:10546253-10546272 | MsG0480018845.01.T01:CDS | 20.0% |
| !!! | TCATTTTCTGAAATTATCAT+CGG | + | Chr4:10545809-10545828 | None:intergenic | 20.0% |
| !!! | TCTTTGTGTTAATTTTGATA+TGG | - | Chr4:10545938-10545957 | MsG0480018845.01.T01:CDS | 20.0% |
| !!! | TTACTTGTTTTTGGAATTTA+GGG | - | Chr4:10545503-10545522 | MsG0480018845.01.T01:CDS | 20.0% |
| !!! | TTCAAAAAGGTTTCTAATTT+TGG | - | Chr4:10546685-10546704 | MsG0480018845.01.T01:intron | 20.0% |
| !!! | TTTACTTGTTTTTGGAATTT+AGG | - | Chr4:10545502-10545521 | MsG0480018845.01.T01:CDS | 20.0% |
| !!! | TTTGAGTTTACTATATGATA+TGG | - | Chr4:10546231-10546250 | MsG0480018845.01.T01:CDS | 20.0% |
| ! | AAAGAAAGTGATTAGAAATG+AGG | + | Chr4:10546632-10546651 | None:intergenic | 25.0% |
| ! | AGAAAAAATTTCATAACAGC+CGG | + | Chr4:10547508-10547527 | None:intergenic | 25.0% |
| ! | ATTCAATGTATCATATGTGT+TGG | - | Chr4:10545833-10545852 | MsG0480018845.01.T01:CDS | 25.0% |
| ! | GTGTGAAGAAATTGAAATTA+GGG | + | Chr4:10545059-10545078 | None:intergenic | 25.0% |
| ! | GTTTGGTTGAAATAGAATAA+AGG | + | Chr4:10547696-10547715 | None:intergenic | 25.0% |
| ! | TGTGTGAAGAAATTGAAATT+AGG | + | Chr4:10545060-10545079 | None:intergenic | 25.0% |
| ! | TTAATGAAATGAAGTCTACA+TGG | - | Chr4:10545732-10545751 | MsG0480018845.01.T01:CDS | 25.0% |
| ! | TTGAAATTAGGGTTTGAAAA+TGG | + | Chr4:10545048-10545067 | None:intergenic | 25.0% |
| ! | TTGGTTGAAATAGAATAAAG+GGG | + | Chr4:10547694-10547713 | None:intergenic | 25.0% |
| !! | TGGTTTTTACAGAATTTTGT+GGG | - | Chr4:10545607-10545626 | MsG0480018845.01.T01:CDS | 25.0% |
| !! | TTTGCATCTGATTTTGAATT+GGG | - | Chr4:10546084-10546103 | MsG0480018845.01.T01:intron | 25.0% |
| !! | TTTTGCATCTGATTTTGAAT+TGG | - | Chr4:10546083-10546102 | MsG0480018845.01.T01:intron | 25.0% |
| !!! | GGGTATTTTTTTTATGTAAG+AGG | - | Chr4:10546252-10546271 | MsG0480018845.01.T01:CDS | 25.0% |
| !!! | GTATGTGTTAATTTTGCTAT+AGG | - | Chr4:10545644-10545663 | MsG0480018845.01.T01:CDS | 25.0% |
| !!! | TAGTTTATAGAGTGTTTTGT+GGG | - | Chr4:10545902-10545921 | MsG0480018845.01.T01:CDS | 25.0% |
| !!! | TTGGTTTTTACAGAATTTTG+TGG | - | Chr4:10545606-10545625 | MsG0480018845.01.T01:CDS | 25.0% |
| !!! | TTTTATTCTTTTGTTTGTGC+AGG | - | Chr4:10546322-10546341 | MsG0480018845.01.T01:CDS | 25.0% |
| AAAGAGAGGGTTTGAAAATT+AGG | + | Chr4:10545018-10545037 | None:intergenic | 30.0% | |
| AACAGATAAAGTAGCATTGT+AGG | + | Chr4:10546497-10546516 | None:intergenic | 30.0% | |
| AAGAGAGGGTTTGAAAATTA+GGG | + | Chr4:10545017-10545036 | None:intergenic | 30.0% | |
| ACAGATAAAGTAGCATTGTA+GGG | + | Chr4:10546496-10546515 | None:intergenic | 30.0% | |
| ACTTCTCATTTCAAAGATCA+GGG | - | Chr4:10546396-10546415 | MsG0480018845.01.T01:intron | 30.0% | |
| ATTCTGTTCTTGATGTTGTT+AGG | - | Chr4:10545425-10545444 | MsG0480018845.01.T01:CDS | 30.0% | |
| CAGCTTAATTAAGCAACTTT+GGG | + | Chr4:10547625-10547644 | None:intergenic | 30.0% | |
| TGAAAATGCAGATGAATGTA+TGG | - | Chr4:10546528-10546547 | MsG0480018845.01.T01:intron | 30.0% | |
| TGACCAAACACAAAATTATC+CGG | + | Chr4:10545346-10545365 | None:intergenic | 30.0% | |
| TGGTTGAAATAGAATAAAGG+GGG | + | Chr4:10547693-10547712 | None:intergenic | 30.0% | |
| ! | CATGTTGCTGTTAAGTTAAT+TGG | - | Chr4:10546153-10546172 | MsG0480018845.01.T01:CDS | 30.0% |
| ! | TATAAACTAGCTTACAGCTT+GGG | + | Chr4:10546609-10546628 | None:intergenic | 30.0% |
| !! | ACAGTTGATTTGACATTGTT+TGG | + | Chr4:10547104-10547123 | None:intergenic | 30.0% |
| !! | GTAGTTTATAGAGTGTTTTG+TGG | - | Chr4:10545901-10545920 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | GTGTTAATTTTGATATGGAG+TGG | - | Chr4:10545943-10545962 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | GTGTTAATTTTGCTATAGGT+GGG | - | Chr4:10545648-10545667 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | TATGTTGATGCTTTTTGCAA+TGG | - | Chr4:10547417-10547436 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | TGTGTTAATTTTGCTATAGG+TGG | - | Chr4:10545647-10545666 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | TTATGAGGCTGATTTTGAAA+TGG | - | Chr4:10546289-10546308 | MsG0480018845.01.T01:CDS | 30.0% |
| !! | TTTGTGGGTTAATTTGTGAT+GGG | - | Chr4:10545622-10545641 | MsG0480018845.01.T01:CDS | 30.0% |
| !!! | GGCTGTTATGAAATTTTTTC+TGG | - | Chr4:10547507-10547526 | MsG0480018845.01.T01:CDS | 30.0% |
| !!! | TATGAGGCTGATTTTGAAAT+GGG | - | Chr4:10546290-10546309 | MsG0480018845.01.T01:CDS | 30.0% |
| !!! | TGTTGATTTTGAAGTGTTTG+TGG | - | Chr4:10545529-10545548 | MsG0480018845.01.T01:CDS | 30.0% |
| !!! | TTTTGTGGGTTAATTTGTGA+TGG | - | Chr4:10545621-10545640 | MsG0480018845.01.T01:CDS | 30.0% |
| AAAATGGAAGAGAGAAAGAG+AGG | + | Chr4:10545032-10545051 | None:intergenic | 35.0% | |
| AAATGGAAGAGAGAAAGAGA+GGG | + | Chr4:10545031-10545050 | None:intergenic | 35.0% | |
| AACCCAACATGAAAAAGTGA+AGG | + | Chr4:10546854-10546873 | None:intergenic | 35.0% | |
| AACTTAACAGCAACATGACA+TGG | + | Chr4:10546150-10546169 | None:intergenic | 35.0% | |
| AAGATGGCTTCTACATTCAT+CGG | - | Chr4:10547149-10547168 | MsG0480018845.01.T01:intron | 35.0% | |
| AATTCAGGAAATGTTCCGAA+GGG | - | Chr4:10547184-10547203 | MsG0480018845.01.T01:intron | 35.0% | |
| ACGGAAGCAAATATCATACA+AGG | + | Chr4:10546569-10546588 | None:intergenic | 35.0% | |
| CAACATGAATGATCTTGTGT+CGG | - | Chr4:10547304-10547323 | MsG0480018845.01.T01:CDS | 35.0% | |
| CACTTCTCATTTCAAAGATC+AGG | - | Chr4:10546395-10546414 | MsG0480018845.01.T01:intron | 35.0% | |
| GCAGCTTAATTAAGCAACTT+TGG | + | Chr4:10547626-10547645 | None:intergenic | 35.0% | |
| GGTGTACTTTGATTGTTATG+AGG | - | Chr4:10546274-10546293 | MsG0480018845.01.T01:CDS | 35.0% | |
| GTCAAATACTAATGCAGAAG+TGG | - | Chr4:10547656-10547675 | MsG0480018845.01.T01:five_prime_UTR | 35.0% | |
| GTTCGTAATCTCTGTTGTAA+GGG | - | Chr4:10547470-10547489 | MsG0480018845.01.T01:CDS | 35.0% | |
| TTACAACAGAGATTACGAAC+CGG | + | Chr4:10547470-10547489 | None:intergenic | 35.0% | |
| TTCCAAGTATGTCATTCACT+AGG | - | Chr4:10546346-10546365 | MsG0480018845.01.T01:CDS | 35.0% | |
| TTCGTAATCTCTGTTGTAAG+GGG | - | Chr4:10547471-10547490 | MsG0480018845.01.T01:CDS | 35.0% | |
| TTTGTGATATTCCACCAACA+GGG | - | Chr4:10547123-10547142 | MsG0480018845.01.T01:intron | 35.0% | |
| ! | AATTTTGTGTTTGGTCAGAG+TGG | - | Chr4:10545349-10545368 | MsG0480018845.01.T01:CDS | 35.0% |
| ! | AGACCGGATAATTTTGTGTT+TGG | - | Chr4:10545340-10545359 | MsG0480018845.01.T01:CDS | 35.0% |
| ! | ATAAACTAGCTTACAGCTTG+GGG | + | Chr4:10546608-10546627 | None:intergenic | 35.0% |
| ! | GTATAAACTAGCTTACAGCT+TGG | + | Chr4:10546610-10546629 | None:intergenic | 35.0% |
| !! | CTGTTTCTGTGTAACAATGT+TGG | - | Chr4:10547539-10547558 | MsG0480018845.01.T01:CDS | 35.0% |
| !! | GGGTTATTTTGCATGATTTG+TGG | - | Chr4:10545668-10545687 | MsG0480018845.01.T01:CDS | 35.0% |
| !! | TTCTGAAATTATCATCGGTG+TGG | + | Chr4:10545804-10545823 | None:intergenic | 35.0% |
| !! | TTTATAGAGTGTTTTGTGGG+TGG | - | Chr4:10545905-10545924 | MsG0480018845.01.T01:CDS | 35.0% |
| !!! | TTGCTTTTTTGTGATGCAGT+TGG | - | Chr4:10546711-10546730 | MsG0480018845.01.T01:intron | 35.0% |
| AAAGTAAGCATCATCCTGTC+TGG | + | Chr4:10546430-10546449 | None:intergenic | 40.0% | |
| AACAGTTCACTGCTATGTTC+AGG | - | Chr4:10547213-10547232 | MsG0480018845.01.T01:intron | 40.0% | |
| AACATGAAAAAGTGAAGGCG+AGG | + | Chr4:10546849-10546868 | None:intergenic | 40.0% | |
| AAGTAAGCATCATCCTGTCT+GGG | + | Chr4:10546429-10546448 | None:intergenic | 40.0% | |
| ACATGAAAAAGTGAAGGCGA+GGG | + | Chr4:10546848-10546867 | None:intergenic | 40.0% | |
| ACATGGTAGCTGATATCAAG+TGG | + | Chr4:10546746-10546765 | None:intergenic | 40.0% | |
| ACCAAATCGGAGCAAAATTC+TGG | - | Chr4:10545125-10545144 | MsG0480018845.01.T01:three_prime_UTR | 40.0% | |
| ATATCAAGATGCTACTGCAG+AGG | - | Chr4:10547337-10547356 | MsG0480018845.01.T01:CDS | 40.0% | |
| CAAGTATGTCATTCACTAGG+TGG | - | Chr4:10546349-10546368 | MsG0480018845.01.T01:CDS | 40.0% | |
| CAATTCAGGAAATGTTCCGA+AGG | - | Chr4:10547183-10547202 | MsG0480018845.01.T01:intron | 40.0% | |
| CACCTAGTGAATGACATACT+TGG | + | Chr4:10546351-10546370 | None:intergenic | 40.0% | |
| CCAAATCGGAGCAAAATTCT+GGG | - | Chr4:10545126-10545145 | MsG0480018845.01.T01:three_prime_UTR | 40.0% | |
| CGTGAGATTCTTCACATTCA+AGG | - | Chr4:10545088-10545107 | MsG0480018845.01.T01:three_prime_UTR | 40.0% | |
| GAGAATTGTGATTGCTTGCA+GGG | - | Chr4:10545457-10545476 | MsG0480018845.01.T01:CDS | 40.0% | |
| GAGATTCTTCACATTCAAGG+TGG | - | Chr4:10545091-10545110 | MsG0480018845.01.T01:three_prime_UTR | 40.0% | |
| GGATGAGTATGAAGATGAAG+AGG | - | Chr4:10547361-10547380 | MsG0480018845.01.T01:CDS | 40.0% | |
| GGTTCGTAATCTCTGTTGTA+AGG | - | Chr4:10547469-10547488 | MsG0480018845.01.T01:CDS | 40.0% | |
| GTTTGTGATATTCCACCAAC+AGG | - | Chr4:10547122-10547141 | MsG0480018845.01.T01:intron | 40.0% | |
| TACTACAACGAAGCTAGTTG+TGG | - | Chr4:10545232-10545251 | MsG0480018845.01.T01:three_prime_UTR | 40.0% | |
| TGAAATAGAATAAAGGGGGC+AGG | + | Chr4:10547689-10547708 | None:intergenic | 40.0% | |
| TGACTATGAAGCACGAACAT+TGG | - | Chr4:10545761-10545780 | MsG0480018845.01.T01:CDS | 40.0% | |
| TGAGAACCTCTTGAAGTCAA+AGG | + | Chr4:10546882-10546901 | None:intergenic | 40.0% | |
| TGAGAATTGTGATTGCTTGC+AGG | - | Chr4:10545456-10545475 | MsG0480018845.01.T01:CDS | 40.0% | |
| TGAGTATGAAGATGAAGAGG+AGG | - | Chr4:10547364-10547383 | MsG0480018845.01.T01:CDS | 40.0% | |
| TGGAATCCATTCGACAAAGT+AGG | + | Chr4:10547084-10547103 | None:intergenic | 40.0% | |
| TTGATATCAGCTACCATGTC+TGG | - | Chr4:10546747-10546766 | MsG0480018845.01.T01:intron | 40.0% | |
| ! | ATTCTGATGGATCTTGAACC+GGG | - | Chr4:10545274-10545293 | MsG0480018845.01.T01:three_prime_UTR | 40.0% |
| ! | CATCTGCATTTTCAACAAGC+TGG | + | Chr4:10546522-10546541 | None:intergenic | 40.0% |
| ! | GATTCTGATGGATCTTGAAC+CGG | - | Chr4:10545273-10545292 | MsG0480018845.01.T01:three_prime_UTR | 40.0% |
| ! | GTAAGGGGATACTTTTGTTC+CGG | - | Chr4:10547486-10547505 | MsG0480018845.01.T01:CDS | 40.0% |
| ! | TGGATCTTTTGCCTGTTTTG+TGG | - | Chr4:10545963-10545982 | MsG0480018845.01.T01:CDS | 40.0% |
| ! | TTTGCACCTTTGACTTCAAG+AGG | - | Chr4:10546873-10546892 | MsG0480018845.01.T01:intron | 40.0% |
| !! | TTGCATGTGAGCTTTTTCTC+AGG | - | Chr4:10546110-10546129 | MsG0480018845.01.T01:intron | 40.0% |
| !!! | CGCCTTCACTTTTTCATGTT+GGG | - | Chr4:10546849-10546868 | MsG0480018845.01.T01:intron | 40.0% |
| !!! | TCGCCTTCACTTTTTCATGT+TGG | - | Chr4:10546848-10546867 | MsG0480018845.01.T01:intron | 40.0% |
| AAAAAGTGAAGGCGAGGGAA+TGG | + | Chr4:10546843-10546862 | None:intergenic | 45.0% | |
| ACAACATGTGACACCAGACA+TGG | + | Chr4:10546763-10546782 | None:intergenic | 45.0% | |
| ACTCGTCCTACTTTGTCGAA+TGG | - | Chr4:10547075-10547094 | MsG0480018845.01.T01:intron | 45.0% | |
| AGAGCTCACACAGCAAATGT+GGG | - | Chr4:10546926-10546945 | MsG0480018845.01.T01:intron | 45.0% | |
| AGATCAGAGTTTAGCTGACC+AGG | + | Chr4:10546795-10546814 | None:intergenic | 45.0% | |
| AGCAGCACACATCATGTTCT+TGG | + | Chr4:10546955-10546974 | None:intergenic | 45.0% | |
| CACTGCTATGTTCAGGAGAA+AGG | - | Chr4:10547220-10547239 | MsG0480018845.01.T01:intron | 45.0% | |
| CGGAAACTCGACTTCAATTC+AGG | - | Chr4:10547169-10547188 | MsG0480018845.01.T01:intron | 45.0% | |
| CTGGGAATAACTGGGCTAAA+GGG | - | Chr4:10545374-10545393 | MsG0480018845.01.T01:CDS | 45.0% | |
| GATCAGAGTTTAGCTGACCA+GGG | + | Chr4:10546794-10546813 | None:intergenic | 45.0% | |
| GGAGAAAGGCTTTCTTGCAT+TGG | - | Chr4:10547234-10547253 | MsG0480018845.01.T01:intron | 45.0% | |
| GGTCTAAAGATCTGACCGTA+CGG | + | Chr4:10545325-10545344 | None:intergenic | 45.0% | |
| GTACGGTCAGATCTTTAGAC+CGG | - | Chr4:10545324-10545343 | MsG0480018845.01.T01:CDS | 45.0% | |
| GTATGTCATTCACTAGGTGG+AGG | - | Chr4:10546352-10546371 | MsG0480018845.01.T01:CDS | 45.0% | |
| GTCAGCTAAACTCTGATCTG+AGG | - | Chr4:10546796-10546815 | MsG0480018845.01.T01:intron | 45.0% | |
| TACGAAGCGCAAACATTCCT+CGG | + | Chr4:10545884-10545903 | None:intergenic | 45.0% | |
| TATCTGCAACTTCCTGTTGC+CGG | - | Chr4:10547448-10547467 | MsG0480018845.01.T01:CDS | 45.0% | |
| TGAACTGTTCACTCACCCTT+CGG | + | Chr4:10547202-10547221 | None:intergenic | 45.0% | |
| TGAAGAGGAGGATTATCAGC+AGG | - | Chr4:10547376-10547395 | MsG0480018845.01.T01:CDS | 45.0% | |
| TGCACAATCAGCCACAAAAC+AGG | + | Chr4:10545977-10545996 | None:intergenic | 45.0% | |
| TGGTGAAGGAATGGATGAGA+TGG | - | Chr4:10547262-10547281 | MsG0480018845.01.T01:CDS | 45.0% | |
| TTGGTACACTGGTGAAGGAA+TGG | - | Chr4:10547253-10547272 | MsG0480018845.01.T01:intron | 45.0% | |
| ! | ACATGTTGTTTGAGGTTCCC+TGG | - | Chr4:10546774-10546793 | MsG0480018845.01.T01:intron | 45.0% |
| ! | CCCAGAATTTTGCTCCGATT+TGG | + | Chr4:10545129-10545148 | None:intergenic | 45.0% |
| ! | CTCTGTTTTCCCTTCTCCAA+AGG | - | Chr4:10546450-10546469 | MsG0480018845.01.T01:intron | 45.0% |
| ! | GCTTTCTTGCATTGGTACAC+TGG | - | Chr4:10547242-10547261 | MsG0480018845.01.T01:intron | 45.0% |
| ! | TGTCGGAAACCTTTGGAGAA+GGG | + | Chr4:10546462-10546481 | None:intergenic | 45.0% |
| ! | TTCCTCGGATTAGGCATGTA+CGG | + | Chr4:10545869-10545888 | None:intergenic | 45.0% |
| ! | TTCTGATGGATCTTGAACCG+GGG | - | Chr4:10545275-10545294 | MsG0480018845.01.T01:three_prime_UTR | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | - | Chr4:10547248-10547267 | MsG0480018845.01.T01:intron | 45.0% |
| !! | CTGGTGTCACATGTTGTTTG+AGG | - | Chr4:10546766-10546785 | MsG0480018845.01.T01:intron | 45.0% |
| !! | GCTAAAGGGCATTACACTGA+AGG | - | Chr4:10545388-10545407 | MsG0480018845.01.T01:CDS | 45.0% |
| !! | GCTCATTTTGCCTCTGAAGA+TGG | + | Chr4:10547012-10547031 | None:intergenic | 45.0% |
| !! | TCGCTCAAGTTGAAGTTCAG+AGG | + | Chr4:10545203-10545222 | None:intergenic | 45.0% |
| AAGAGGTTCTCAGCAGTACC+GGG | - | Chr4:10546890-10546909 | MsG0480018845.01.T01:intron | 50.0% | |
| ACAACGAAGCTAGTTGTGGC+CGG | - | Chr4:10545236-10545255 | MsG0480018845.01.T01:three_prime_UTR | 50.0% | |
| ACTATGGATAGTGTCCGGTC+TGG | - | Chr4:10545298-10545317 | MsG0480018845.01.T01:three_prime_UTR | 50.0% | |
| ACTGCATCAGCCATCTTCAG+AGG | - | Chr4:10546999-10547018 | MsG0480018845.01.T01:intron | 50.0% | |
| AGAGATTACGAACCGGCAAC+AGG | + | Chr4:10547463-10547482 | None:intergenic | 50.0% | |
| AGATCCATCAGAATCGCACG+AGG | + | Chr4:10545268-10545287 | None:intergenic | 50.0% | |
| CAAGAGGTTCTCAGCAGTAC+CGG | - | Chr4:10546889-10546908 | MsG0480018845.01.T01:intron | 50.0% | |
| CACATTCAAGGTGGCCAATG+CGG | - | Chr4:10545100-10545119 | MsG0480018845.01.T01:three_prime_UTR | 50.0% | |
| CAGAGCTCACACAGCAAATG+TGG | - | Chr4:10546925-10546944 | MsG0480018845.01.T01:intron | 50.0% | |
| CATTCACTAGGTGGAGGAAC+TGG | - | Chr4:10546358-10546377 | MsG0480018845.01.T01:CDS | 50.0% | |
| CATTGGACACTGACACGACA+CGG | - | Chr4:10545778-10545797 | MsG0480018845.01.T01:CDS | 50.0% | |
| GAACATGGAATCGACCCTAC+CGG | - | Chr4:10545163-10545182 | MsG0480018845.01.T01:three_prime_UTR | 50.0% | |
| GAAGCCATCTTCAACCCTGT+TGG | + | Chr4:10547140-10547159 | None:intergenic | 50.0% | |
| GCGCAAACATTCCTCGGATT+AGG | + | Chr4:10545878-10545897 | None:intergenic | 50.0% | |
| GCTGGGAATAACTGGGCTAA+AGG | - | Chr4:10545373-10545392 | MsG0480018845.01.T01:CDS | 50.0% | |
| GGATGAGATGGAGTTCACTG+AGG | - | Chr4:10547274-10547293 | MsG0480018845.01.T01:CDS | 50.0% | |
| GGCCAATGCGGTAACCAAAT+CGG | - | Chr4:10545112-10545131 | MsG0480018845.01.T01:three_prime_UTR | 50.0% | |
| GGGTGGTAAGCTTGAGAGTA+CGG | + | Chr4:10546588-10546607 | None:intergenic | 50.0% | |
| GTAGGGTTCAACCACAGTGT+CGG | + | Chr4:10546479-10546498 | None:intergenic | 50.0% | |
| TCAAGATGCTACTGCAGAGG+AGG | - | Chr4:10547340-10547359 | MsG0480018845.01.T01:CDS | 50.0% | |
| TCAGGGAAGAATACCCAGAC+AGG | - | Chr4:10546413-10546432 | MsG0480018845.01.T01:intron | 50.0% | |
| TCCAAAGGTTTCCGACACTG+TGG | - | Chr4:10546465-10546484 | MsG0480018845.01.T01:intron | 50.0% | |
| TCCACCAACAGGGTTGAAGA+TGG | - | Chr4:10547133-10547152 | MsG0480018845.01.T01:intron | 50.0% | |
| TGAAGATGGCTGATGCAGTG+AGG | + | Chr4:10546998-10547017 | None:intergenic | 50.0% | |
| TGAGATGGAGTTCACTGAGG+CGG | - | Chr4:10547277-10547296 | MsG0480018845.01.T01:CDS | 50.0% | |
| TGGAGGAACTGGATCTGGAA+TGG | - | Chr4:10546369-10546388 | MsG0480018845.01.T01:CDS | 50.0% | |
| TGTTTGGTCAGAGTGGTGCT+GGG | - | Chr4:10545356-10545375 | MsG0480018845.01.T01:CDS | 50.0% | |
| ! | AACTAGCTTACAGCTTGGGG+TGG | + | Chr4:10546605-10546624 | None:intergenic | 50.0% |
| ! | ACCACAGTGTCGGAAACCTT+TGG | + | Chr4:10546469-10546488 | None:intergenic | 50.0% |
| ! | AGAGTGGTGCTGGGAATAAC+TGG | - | Chr4:10545365-10545384 | MsG0480018845.01.T01:CDS | 50.0% |
| ! | CGGAGCAAAATTCTGGGAAG+TGG | - | Chr4:10545132-10545151 | MsG0480018845.01.T01:three_prime_UTR | 50.0% |
| ! | GAGTGGTGCTGGGAATAACT+GGG | - | Chr4:10545366-10545385 | MsG0480018845.01.T01:CDS | 50.0% |
| ! | GGAGGAACTGGATCTGGAAT+GGG | - | Chr4:10546370-10546389 | MsG0480018845.01.T01:CDS | 50.0% |
| ! | GGTAGGGTCGATTCCATGTT+CGG | + | Chr4:10545164-10545183 | None:intergenic | 50.0% |
| ! | GTGTCGGAAACCTTTGGAGA+AGG | + | Chr4:10546463-10546482 | None:intergenic | 50.0% |
| ! | TCCTCGGATTAGGCATGTAC+GGG | + | Chr4:10545868-10545887 | None:intergenic | 50.0% |
| !! | CACATTTGCTGTGTGAGCTC+TGG | + | Chr4:10546927-10546946 | None:intergenic | 50.0% |
| !! | CTCCGATTTGGTTACCGCAT+TGG | + | Chr4:10545117-10545136 | None:intergenic | 50.0% |
| !! | TGAGGTATCGTCCGTGTCTA+GGG | + | Chr4:10546980-10546999 | None:intergenic | 50.0% |
| CGGACACTATCCATAGTCCC+CGG | + | Chr4:10545295-10545314 | None:intergenic | 55.0% | |
| CGGGGACTATGGATAGTGTC+CGG | - | Chr4:10545293-10545312 | MsG0480018845.01.T01:three_prime_UTR | 55.0% | |
| CGTTCCTCGTGCGATTCTGA+TGG | - | Chr4:10545261-10545280 | MsG0480018845.01.T01:three_prime_UTR | 55.0% | |
| CTAGGTGGAGGAACTGGATC+TGG | - | Chr4:10546364-10546383 | MsG0480018845.01.T01:CDS | 55.0% | |
| GAATCGCACGAGGAACGAAC+CGG | + | Chr4:10545258-10545277 | None:intergenic | 55.0% | |
| GCCATCTTCAACCCTGTTGG+TGG | + | Chr4:10547137-10547156 | None:intergenic | 55.0% | |
| GCTCTGGTACACTCAAAGCC+CGG | + | Chr4:10546911-10546930 | None:intergenic | 55.0% | |
| GGATCTTGAACCGGGGACTA+TGG | - | Chr4:10545282-10545301 | MsG0480018845.01.T01:three_prime_UTR | 55.0% | |
| GTGTTTGGTCAGAGTGGTGC+TGG | - | Chr4:10545355-10545374 | MsG0480018845.01.T01:CDS | 55.0% | |
| TCCCGTACATGCCTAATCCG+AGG | - | Chr4:10545864-10545883 | MsG0480018845.01.T01:CDS | 55.0% | |
| ! | GAAGTGGTTTGCGCCGAACA+TGG | - | Chr4:10545148-10545167 | MsG0480018845.01.T01:three_prime_UTR | 55.0% |
| ! | TGTGCTGCTGACCCTAGACA+CGG | - | Chr4:10546966-10546985 | MsG0480018845.01.T01:intron | 55.0% |
| !! | GTGAGGTATCGTCCGTGTCT+AGG | + | Chr4:10546981-10547000 | None:intergenic | 55.0% |
| AGTGTCCGGTCTGGACCGTA+CGG | - | Chr4:10545307-10545326 | MsG0480018845.01.T01:exon | 60.0% | |
| ATCGACCCTACCGGACGCTA+CGG | - | Chr4:10545172-10545191 | MsG0480018845.01.T01:three_prime_UTR | 60.0% | |
| TACCACCGTAGCGTCCGGTA+GGG | + | Chr4:10545180-10545199 | None:intergenic | 60.0% | |
| TCTGACCGTACGGTCCAGAC+CGG | + | Chr4:10545315-10545334 | None:intergenic | 60.0% | |
| !! | AGAGGTACCACCGTAGCGTC+CGG | + | Chr4:10545185-10545204 | None:intergenic | 60.0% |
| GTACCACCGTAGCGTCCGGT+AGG | + | Chr4:10545181-10545200 | None:intergenic | 65.0% | |
| GACCCTACCGGACGCTACGG+TGG | - | Chr4:10545175-10545194 | MsG0480018845.01.T01:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 10545002 | 10547736 | 10545002 | ID=MsG0480018845.01;Name=MsG0480018845.01 |
| Chr4 | mRNA | 10545002 | 10547736 | 10545002 | ID=MsG0480018845.01.T01;Parent=MsG0480018845.01;Name=MsG0480018845.01.T01;_AED=0.48;_eAED=0.48;_QI=83|1|1|1|1|1|3|321|449 |
| Chr4 | exon | 10545002 | 10546008 | 10545002 | ID=MsG0480018845.01.T01:exon:3060;Parent=MsG0480018845.01.T01 |
| Chr4 | exon | 10546125 | 10546394 | 10546125 | ID=MsG0480018845.01.T01:exon:3059;Parent=MsG0480018845.01.T01 |
| Chr4 | exon | 10547260 | 10547736 | 10547260 | ID=MsG0480018845.01.T01:exon:3058;Parent=MsG0480018845.01.T01 |
| Chr4 | five_prime_UTR | 10547654 | 10547736 | 10547654 | ID=MsG0480018845.01.T01:five_prime_utr;Parent=MsG0480018845.01.T01 |
| Chr4 | CDS | 10547260 | 10547653 | 10547260 | ID=MsG0480018845.01.T01:cds;Parent=MsG0480018845.01.T01 |
| Chr4 | CDS | 10546125 | 10546394 | 10546125 | ID=MsG0480018845.01.T01:cds;Parent=MsG0480018845.01.T01 |
| Chr4 | CDS | 10545323 | 10546008 | 10545323 | ID=MsG0480018845.01.T01:cds;Parent=MsG0480018845.01.T01 |
| Chr4 | three_prime_UTR | 10545002 | 10545322 | 10545002 | ID=MsG0480018845.01.T01:three_prime_utr;Parent=MsG0480018845.01.T01 |
| Gene Sequence |
| Protein sequence |
