AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019532.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019532.01.T01 MTR_4g033170 91.667 312 11 2 1 303 52 357 0.0 527
MsG0480019532.01.T01 MTR_4g033085 92.308 312 9 2 1 303 52 357 0.0 514
MsG0480019532.01.T01 MTR_4g088200 74.679 312 68 2 1 303 52 361 5.18e-168 471
MsG0480019532.01.T01 MTR_4g033200 75.399 313 66 3 1 303 52 363 4.78e-161 453
MsG0480019532.01.T01 MTR_4g033015 74.760 313 68 3 1 303 52 363 1.75e-159 449
MsG0480019532.01.T01 MTR_4g033150 73.482 313 72 3 1 303 52 363 1.51e-156 441
MsG0480019532.01.T01 MTR_4g088190 74.441 313 70 2 1 303 52 364 5.40e-154 435
MsG0480019532.01.T01 MTR_0794s0020 71.859 199 54 2 1 198 52 249 1.24e-102 300
MsG0480019532.01.T01 MTR_7g014570 48.718 312 140 5 1 303 52 352 9.89e-97 289
MsG0480019532.01.T01 MTR_7g014510 48.077 312 147 5 1 303 52 357 1.54e-95 286
MsG0480019532.01.T01 MTR_4g088345 49.840 313 139 5 1 303 52 356 1.47e-92 279
MsG0480019532.01.T01 MTR_1g076940 47.937 315 147 7 1 303 52 361 3.51e-92 278
MsG0480019532.01.T01 MTR_7g024500 45.484 310 148 5 1 301 51 348 1.58e-89 271
MsG0480019532.01.T01 MTR_5g074600 45.806 310 151 6 5 303 56 359 6.57e-88 267
MsG0480019532.01.T01 MTR_4g088340 47.923 313 145 5 1 303 29 333 2.97e-87 265
MsG0480019532.01.T01 MTR_5g074680 44.089 313 158 6 1 302 53 359 2.13e-84 258
MsG0480019532.01.T01 MTR_7g024520 45.161 310 149 5 1 301 51 348 2.51e-83 255
MsG0480019532.01.T01 MTR_5g074580 44.268 314 158 6 1 303 53 360 5.74e-82 252
MsG0480019532.01.T01 MTR_5g074610 41.987 312 139 4 1 303 48 326 4.21e-78 241
MsG0480019532.01.T01 MTR_4g079160 41.748 309 162 4 5 303 55 355 2.14e-75 235
MsG0480019532.01.T01 MTR_5g074540 40.127 314 153 6 1 303 52 341 8.38e-74 230
MsG0480019532.01.T01 MTR_1g076930 44.700 217 111 5 1 214 29 239 5.09e-51 169
MsG0480019532.01.T01 MTR_3g083620 33.333 312 182 11 1 299 59 357 9.03e-36 132
MsG0480019532.01.T01 MTR_0017s0100 30.380 316 197 9 1 303 63 368 3.21e-34 128
MsG0480019532.01.T01 MTR_0079s0070 29.747 316 199 9 1 303 29 334 5.63e-32 121
MsG0480019532.01.T01 MTR_4g038440 29.747 316 199 9 1 303 63 368 1.07e-31 121
MsG0480019532.01.T01 MTR_1g096310 30.314 287 183 6 13 289 78 357 2.77e-31 120
MsG0480019532.01.T01 MTR_1g036460 29.630 297 191 7 5 290 66 355 4.87e-31 119
MsG0480019532.01.T01 MTR_1g036490 28.814 295 190 7 22 302 81 369 2.00e-30 118
MsG0480019532.01.T01 MTR_7g012090 28.814 295 190 7 18 301 85 370 1.25e-29 116
MsG0480019532.01.T01 MTR_7g012070 28.475 295 191 7 18 301 85 370 3.11e-29 115
MsG0480019532.01.T01 MTR_7g011900 27.848 316 206 9 1 302 62 369 6.58e-29 114
MsG0480019532.01.T01 MTR_5g098170 29.667 300 187 11 13 299 70 358 2.25e-28 112
MsG0480019532.01.T01 MTR_1g036510 29.000 300 189 9 5 290 80 369 3.33e-28 112
MsG0480019532.01.T01 MTR_7g012040 27.244 312 207 8 1 301 61 363 4.60e-28 111
MsG0480019532.01.T01 MTR_7g011990 25.879 313 209 9 5 302 62 366 6.21e-28 111
MsG0480019532.01.T01 MTR_3g092900 30.719 306 174 11 5 289 61 349 4.23e-27 108
MsG0480019532.01.T01 MTR_2g072790 31.650 297 172 9 20 300 70 351 1.22e-26 107
MsG0480019532.01.T01 MTR_2g055940 27.358 318 200 10 1 301 55 358 1.06e-25 105
MsG0480019532.01.T01 MTR_7g012020 27.707 314 204 9 1 301 61 364 2.31e-24 101
MsG0480019532.01.T01 MTR_7g118300 28.283 297 191 9 13 298 83 368 1.29e-23 99.8
MsG0480019532.01.T01 MTR_8g068690 27.273 297 196 8 1 284 68 357 8.09e-23 97.4
MsG0480019532.01.T01 MTR_0591s0010 26.936 297 197 8 1 284 69 358 1.47e-22 96.7
MsG0480019532.01.T01 MTR_8g024160 29.600 250 158 6 50 288 71 313 1.72e-22 95.9
MsG0480019532.01.T01 MTR_3g021430 29.000 300 186 11 13 298 64 350 3.08e-22 95.5
MsG0480019532.01.T01 MTR_3g021440 28.472 288 188 7 13 290 77 356 4.88e-22 95.1
MsG0480019532.01.T01 MTR_8g068750 27.519 258 168 7 50 295 120 370 5.09e-22 95.1
MsG0480019532.01.T01 MTR_8g068870 25.890 309 208 9 1 295 55 356 2.82e-21 92.8
MsG0480019532.01.T01 MTR_3g096050 26.936 297 191 9 20 302 73 357 1.54e-20 90.9
MsG0480019532.01.T01 MTR_7g118320 28.000 250 162 6 50 288 105 347 5.64e-20 89.4
MsG0480019532.01.T01 MTR_7g012020 28.507 221 149 6 1 217 61 276 1.17e-19 87.4
MsG0480019532.01.T01 MTR_3g096070 27.751 209 134 5 92 288 117 320 1.73e-18 84.7
MsG0480019532.01.T01 MTR_6g078850 24.800 250 170 6 50 288 126 368 3.25e-17 82.0
MsG0480019532.01.T01 MTR_1g036510 29.302 215 140 7 5 214 80 287 3.23e-16 77.8
MsG0480019532.01.T01 MTR_8g068730 32.738 168 96 6 142 295 174 338 9.05e-16 77.0
MsG0480019532.01.T01 MTR_1g050220 31.724 145 95 2 143 287 147 287 1.28e-15 76.3
MsG0480019532.01.T01 MTR_8g068570 30.409 171 106 3 110 270 150 317 6.12e-15 74.3
MsG0480019532.01.T01 MTR_4g038440 26.512 215 150 4 1 213 63 271 6.57e-15 73.6
MsG0480019532.01.T01 MTR_8g068600 28.049 164 113 3 50 212 94 253 2.76e-14 72.0
MsG0480019532.01.T01 MTR_8g068620 33.945 109 70 1 104 212 4 110 5.44e-14 67.8
MsG0480019532.01.T01 MTR_3g096050 28.856 201 131 6 20 217 73 264 1.09e-13 70.1
MsG0480019532.01.T01 MTR_8g068690 25.116 215 154 5 1 212 68 278 4.52e-13 68.6
MsG0480019532.01.T01 MTR_7g012020 28.042 189 127 6 1 185 61 244 1.94e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019532.01.T01 AT4G35150 30.312 320 156 10 1 302 53 323 1.91e-29 114
MsG0480019532.01.T01 AT4G35160 31.595 326 187 11 1 302 67 380 1.03e-27 111
MsG0480019532.01.T01 AT5G54160 29.703 303 191 9 1 290 55 348 3.50e-26 106
MsG0480019532.01.T01 AT1G51990 29.703 303 194 8 13 303 67 362 3.92e-25 103
MsG0480019532.01.T01 AT1G51990 29.703 303 194 8 13 303 67 362 5.49e-24 100
MsG0480019532.01.T01 AT1G77520 29.022 317 199 10 5 302 71 380 1.90e-23 99.4
MsG0480019532.01.T01 AT3G53140 28.956 297 181 9 20 300 74 356 3.56e-23 98.2
MsG0480019532.01.T01 AT1G33030 28.525 305 189 10 6 293 50 342 2.62e-22 95.9
MsG0480019532.01.T01 AT5G53810 29.180 305 190 10 14 302 83 377 2.08e-19 87.8
MsG0480019532.01.T01 AT1G63140 27.124 306 200 9 13 302 82 380 4.59e-17 81.3
MsG0480019532.01.T01 AT1G63140 27.124 306 200 9 13 302 102 400 4.95e-17 81.3
MsG0480019532.01.T01 AT1G77530 28.431 306 196 8 13 302 82 380 1.36e-15 77.0
MsG0480019532.01.T01 AT1G62900 29.688 192 121 4 122 302 16 204 1.69e-14 71.2
MsG0480019532.01.T01 AT1G76790 24.917 301 185 10 13 295 74 351 6.01e-13 68.9

Find 72 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATACATGTTTGTATAAA+TGG 0.173388 4:+21742001 None:intergenic
ACTGTTCTTCAATATCTTTA+AGG 0.222796 4:+21740383 None:intergenic
TTCAAAGATGAGGATAATTC+AGG 0.281306 4:+21741891 None:intergenic
CAGCCATGTGTTTGAGGGTT+TGG 0.297695 4:-21741478 MsG0480019532.01.T01:CDS
GTTTGAGGGTTTGGAATCTT+TGG 0.299287 4:-21741469 MsG0480019532.01.T01:CDS
TAGAGGACATTAACTTTAGA+AGG 0.302430 4:+21741861 None:intergenic
CTCAGAGAACCATTTCTTAG+AGG 0.305502 4:+21741647 None:intergenic
CTAAAGTTAATGTCCTCTAT+AGG 0.392708 4:-21741857 MsG0480019532.01.T01:CDS
ACTAACAAGTGGTGCAAAAC+AGG 0.393012 4:+21741707 None:intergenic
AAAGAAGCAATTTCAAGAAA+AGG 0.393418 4:-21740360 MsG0480019532.01.T01:CDS
CCACTGATGAGAAGCTTTGA+AGG 0.393766 4:+21741738 None:intergenic
AAAATAAAGCAATTTCTTCT+CGG 0.394106 4:-21742171 MsG0480019532.01.T01:five_prime_UTR
AAGAAAGAGAAAAGAAAGAA+TGG 0.396191 4:-21740221 MsG0480019532.01.T01:CDS
CAGGTTGTGGCTAACTTATC+TGG 0.396383 4:-21741360 MsG0480019532.01.T01:CDS
GAGAGACTTGAAGCCGCATA+TGG 0.397843 4:+21740152 None:intergenic
TCATAGGCTTTCCATGTTTG+TGG 0.399025 4:+21741919 None:intergenic
GATAAACTTAGTTTGTTTCA+AGG 0.401061 4:-21741549 MsG0480019532.01.T01:CDS
GCAATTTCTTCTCGGTGTCC+TGG 0.408733 4:-21742163 MsG0480019532.01.T01:five_prime_UTR
GATAATTCAGGAACAGTCAT+AGG 0.424086 4:+21741903 None:intergenic
CAAAATTTGAACTTTGTTGG+TGG 0.427047 4:-21741333 MsG0480019532.01.T01:CDS
ACTCAAAATTTGAACTTTGT+TGG 0.429435 4:-21741336 MsG0480019532.01.T01:CDS
GTAATGATGACTCTGCATAA+TGG 0.436305 4:-21740246 MsG0480019532.01.T01:CDS
AAGAAGCAATTTCAAGAAAA+GGG 0.443928 4:-21740359 MsG0480019532.01.T01:CDS
TGTGGCACTCCTCTAAGAAA+TGG 0.452397 4:-21741656 MsG0480019532.01.T01:CDS
ATAAACTTAGTTTGTTTCAA+GGG 0.456335 4:-21741548 MsG0480019532.01.T01:CDS
ACAACGGTGAAAGGCAAAGA+AGG 0.456389 4:-21741795 MsG0480019532.01.T01:CDS
AGTGCTTCATCCATGTTCTC+TGG 0.459421 4:-21741682 MsG0480019532.01.T01:CDS
GACTGCAGCCATGTGTTTGA+GGG 0.460568 4:-21741483 MsG0480019532.01.T01:CDS
GTTGATGTAGCAGGTGGGAC+TGG 0.460670 4:-21741447 MsG0480019532.01.T01:CDS
AATGTTTAAGCTTGCTCTCA+AGG 0.478021 4:-21741505 MsG0480019532.01.T01:CDS
GGACTGCAGCCATGTGTTTG+AGG 0.478258 4:-21741484 MsG0480019532.01.T01:CDS
GCACTCTATGAAAGTGCAAT+GGG 0.484567 4:-21741612 MsG0480019532.01.T01:CDS
TCAAAATCAGCTGTGGAACT+AGG 0.489529 4:-21741957 MsG0480019532.01.T01:five_prime_UTR
ATCCATGTTCTCTGGATATG+TGG 0.500274 4:-21741674 MsG0480019532.01.T01:CDS
ATATATACATTTCAAAATCC+AGG 0.502207 4:+21742145 None:intergenic
GAATCTTTGGTTGATGTAGC+AGG 0.509095 4:-21741456 MsG0480019532.01.T01:CDS
TTTAGATCAACCACAGGTTG+TGG 0.518679 4:-21741373 MsG0480019532.01.T01:CDS
TTGCGCTTGCTAACACATGA+TGG 0.524871 4:-21741831 MsG0480019532.01.T01:CDS
TGCACTCTATGAAAGTGCAA+TGG 0.543647 4:-21741613 MsG0480019532.01.T01:CDS
AAGAAACTCATATATGATGC+AGG 0.545378 4:-21740198 MsG0480019532.01.T01:CDS
CAACGGTGAAAGGCAAAGAA+GGG 0.548081 4:-21741794 MsG0480019532.01.T01:CDS
GAAATGGTTCTCTGAGGAGA+AGG 0.549990 4:-21741640 MsG0480019532.01.T01:CDS
TTGAGTAAAACAGCATCTGC+AGG 0.557051 4:+21741288 None:intergenic
CATTTGTGAATCAGCTGCCA+TGG 0.558343 4:+21741524 None:intergenic
TAAACTTAGTTTGTTTCAAG+GGG 0.566712 4:-21741547 MsG0480019532.01.T01:CDS
AGGGTGAAGTTTCAAAGATG+AGG 0.567354 4:+21741881 None:intergenic
AGAGACTTGAAGCCGCATAT+GGG 0.571433 4:+21740153 None:intergenic
ATACAGCTTTATAAGTTCCA+TGG 0.573273 4:-21741983 MsG0480019532.01.T01:five_prime_UTR
ACAATGGATTTCAAGAGCAA+TGG 0.576228 4:-21742057 MsG0480019532.01.T01:five_prime_UTR
GCAAGCGCAAGAACCTATAG+AGG 0.576698 4:+21741844 None:intergenic
GTTGCAATTGCACTTTGACA+TGG 0.578956 4:-21740268 MsG0480019532.01.T01:CDS
CCTTCAAAGCTTCTCATCAG+TGG 0.586184 4:-21741738 MsG0480019532.01.T01:CDS
TGCCACATATCCAGAGAACA+TGG 0.593078 4:+21741672 None:intergenic
GTCAAAGTGCAATTGCAACT+CGG 0.597693 4:+21740272 None:intergenic
TAGTTTGTTTCAAGGGGCCA+TGG 0.599443 4:-21741541 MsG0480019532.01.T01:CDS
AGAGGACATTAACTTTAGAA+GGG 0.601048 4:+21741862 None:intergenic
AAGTTTAATCTATAAAACAA+TGG 0.603893 4:-21742073 MsG0480019532.01.T01:five_prime_UTR
TCTTTGGTTGATGTAGCAGG+TGG 0.609398 4:-21741453 MsG0480019532.01.T01:CDS
GATAAGTTAGCCACAACCTG+TGG 0.609880 4:+21741363 None:intergenic
AGTAAAACAGCATCTGCAGG+AGG 0.624714 4:+21741291 None:intergenic
TATAAGATTACTCCCATATG+CGG 0.627092 4:-21740165 MsG0480019532.01.T01:CDS
GTAGATGCAATCCACAAACA+TGG 0.627357 4:-21741930 MsG0480019532.01.T01:five_prime_UTR
AACGGTGAAAGGCAAAGAAG+GGG 0.637209 4:-21741793 MsG0480019532.01.T01:CDS
GTATATGAAGTATATAAACA+AGG 0.639784 4:+21742113 None:intergenic
ATGGCACTCAAAATCAGCTG+TGG 0.642926 4:-21741964 MsG0480019532.01.T01:five_prime_UTR
ATTCCAAACCCTCAAACACA+TGG 0.643702 4:+21741475 None:intergenic
CTTTGGTTGATGTAGCAGGT+GGG 0.651080 4:-21741452 MsG0480019532.01.T01:CDS
AAAACTGTGCATTTGATGTG+AGG 0.654544 4:+21741393 None:intergenic
TGAAGCACTCCACTAACAAG+TGG 0.666600 4:+21741696 None:intergenic
CTCTAAGAAATGGTTCTCTG+AGG 0.677453 4:-21741646 MsG0480019532.01.T01:CDS
GTAAAACAGCATCTGCAGGA+GGG 0.681270 4:+21741292 None:intergenic
CTGATGAGAAGCTTTGAAGG+AGG 0.702373 4:+21741741 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATTATTTTAATTTAT+TGG - Chr4:21741848-21741867 MsG0480019532.01.T01:CDS 0.0%
!! AAAATTCATATTTAATTCAT+TGG + Chr4:21741541-21741560 None:intergenic 10.0%
!! ATTTCATTAAAAAAATATGA+AGG - Chr4:21741666-21741685 MsG0480019532.01.T01:CDS 10.0%
!!! AATATGAATTTTTATGTTTT+TGG - Chr4:21741549-21741568 MsG0480019532.01.T01:CDS 10.0%
!!! ATTTTACAATTTTATTTCTT+TGG + Chr4:21741830-21741849 None:intergenic 10.0%
!!! TTATTTTATGTCTTATTTTT+AGG + Chr4:21740150-21740169 None:intergenic 10.0%
!!! TTTTACAATTTTATTTCTTT+GGG + Chr4:21741829-21741848 None:intergenic 10.0%
!! AAGTTTAATCTATAAAACAA+TGG - Chr4:21740261-21740280 MsG0480019532.01.T01:CDS 15.0%
!! TTTGTTAAGAAAGTTAAAAA+AGG + Chr4:21740753-21740772 None:intergenic 15.0%
!! AAAATAAAGCAATTTCTTCT+CGG - Chr4:21740163-21740182 MsG0480019532.01.T01:CDS 20.0%
!! ACAAATTTATATCTTTGATC+AGG + Chr4:21741494-21741513 None:intergenic 20.0%
!! AGGTGATAAAATAATAACAT+CGG - Chr4:21741231-21741250 MsG0480019532.01.T01:intron 20.0%
!! ATATATACATTTCAAAATCC+AGG + Chr4:21740192-21740211 None:intergenic 20.0%
!! ATCCAAAAAAAAATTACTTG+TGG - Chr4:21741158-21741177 MsG0480019532.01.T01:intron 20.0%
!! CAAAATAAAATGGAATCAAA+TGG + Chr4:21741098-21741117 None:intergenic 20.0%
!! GTATATGAAGTATATAAACA+AGG + Chr4:21740224-21740243 None:intergenic 20.0%
!! TATGTTCTGATTTCATAATT+AGG - Chr4:21741124-21741143 MsG0480019532.01.T01:intron 20.0%
!! TCCAAAAAAAAATTACTTGT+GGG - Chr4:21741159-21741178 MsG0480019532.01.T01:intron 20.0%
!! TGATCAAAGATATAAATTTG+TGG - Chr4:21741493-21741512 MsG0480019532.01.T01:CDS 20.0%
!! TGTATACATGTTTGTATAAA+TGG + Chr4:21740336-21740355 None:intergenic 20.0%
!!! ACGTAAGAACAATTTTTATT+TGG + Chr4:21741366-21741385 None:intergenic 20.0%
!!! ATAAACTTAGTTTGTTTCAA+GGG - Chr4:21740786-21740805 MsG0480019532.01.T01:intron 20.0%
!!! TCATAGATGAAAAATTTTGA+GGG - Chr4:21741726-21741745 MsG0480019532.01.T01:CDS 20.0%
!!! TTCATAGATGAAAAATTTTG+AGG - Chr4:21741725-21741744 MsG0480019532.01.T01:CDS 20.0%
! AAAGAAGCAATTTCAAGAAA+AGG - Chr4:21741974-21741993 MsG0480019532.01.T01:five_prime_UTR 25.0%
! AAGAAAGAGAAAAGAAAGAA+TGG - Chr4:21742113-21742132 MsG0480019532.01.T01:five_prime_UTR 25.0%
! AAGAAGCAATTTCAAGAAAA+GGG - Chr4:21741975-21741994 MsG0480019532.01.T01:five_prime_UTR 25.0%
! AATCAAATGTTGGTACATTT+AGG - Chr4:21741783-21741802 MsG0480019532.01.T01:CDS 25.0%
! ACTCAAAATTTGAACTTTGT+TGG - Chr4:21740998-21741017 MsG0480019532.01.T01:intron 25.0%
! ACTGTTCTTCAATATCTTTA+AGG + Chr4:21741954-21741973 None:intergenic 25.0%
! ATCAAATGTTGGTACATTTA+GGG - Chr4:21741784-21741803 MsG0480019532.01.T01:CDS 25.0%
! ATTATGAAATCAGAACATAC+AGG + Chr4:21741123-21741142 None:intergenic 25.0%
! ATTTCAAGAAAAGGGAAAAA+AGG - Chr4:21741983-21742002 MsG0480019532.01.T01:five_prime_UTR 25.0%
! CAAAAAAAAATTACTTGTGG+GGG - Chr4:21741161-21741180 MsG0480019532.01.T01:intron 25.0%
! CCAAAAAAAAATTACTTGTG+GGG - Chr4:21741160-21741179 MsG0480019532.01.T01:intron 25.0%
! TTATGAAATCAGAACATACA+GGG + Chr4:21741122-21741141 None:intergenic 25.0%
!!! AAGCCTAAGAAATATTTTAG+AGG - Chr4:21741754-21741773 MsG0480019532.01.T01:CDS 25.0%
!!! AGCCTAAGAAATATTTTAGA+GGG - Chr4:21741755-21741774 MsG0480019532.01.T01:CDS 25.0%
!!! ATAAGTTTTGACTAAAACGT+AGG - Chr4:21741695-21741714 MsG0480019532.01.T01:CDS 25.0%
!!! CATAATTTTTAGCAATGTGT+AGG - Chr4:21741211-21741230 MsG0480019532.01.T01:intron 25.0%
!!! GATAAACTTAGTTTGTTTCA+AGG - Chr4:21740785-21740804 MsG0480019532.01.T01:intron 25.0%
!!! TAAACTTAGTTTGTTTCAAG+GGG - Chr4:21740787-21740806 MsG0480019532.01.T01:intron 25.0%
!!! TAAGTTTTGACTAAAACGTA+GGG - Chr4:21741696-21741715 MsG0480019532.01.T01:CDS 25.0%
AAGAAACTCATATATGATGC+AGG - Chr4:21742136-21742155 MsG0480019532.01.T01:five_prime_UTR 30.0%
ATCTCAAATGTCTTTCAAAG+TGG - Chr4:21741900-21741919 MsG0480019532.01.T01:CDS 30.0%
CAAAATTTGAACTTTGTTGG+TGG - Chr4:21741001-21741020 MsG0480019532.01.T01:intron 30.0%
CATACAGGGACAAAATAAAA+TGG + Chr4:21741108-21741127 None:intergenic 30.0%
CATACATAGAGAGATATTTC+CGG + Chr4:21741441-21741460 None:intergenic 30.0%
CTAAAGTTAATGTCCTCTAT+AGG - Chr4:21740477-21740496 MsG0480019532.01.T01:intron 30.0%
TAGAGGACATTAACTTTAGA+AGG + Chr4:21740476-21740495 None:intergenic 30.0%
TATAAGATTACTCCCATATG+CGG - Chr4:21742169-21742188 MsG0480019532.01.T01:five_prime_UTR 30.0%
TCAAATGTTGGTACATTTAG+GGG - Chr4:21741785-21741804 MsG0480019532.01.T01:CDS 30.0%
TCTCAAATGTCTTTCAAAGT+GGG - Chr4:21741901-21741920 MsG0480019532.01.T01:CDS 30.0%
TTCAAAGATGAGGATAATTC+AGG + Chr4:21740446-21740465 None:intergenic 30.0%
TTTATATCTTTGATCAGGCA+CGG + Chr4:21741489-21741508 None:intergenic 30.0%
! AGAGGACATTAACTTTAGAA+GGG + Chr4:21740475-21740494 None:intergenic 30.0%
! ATACAGCTTTATAAGTTCCA+TGG - Chr4:21740351-21740370 MsG0480019532.01.T01:CDS 30.0%
! CTTTGGGTTAAATACGTAAA+TGG + Chr4:21741813-21741832 None:intergenic 30.0%
!! GTCCCTCTAAAATATTTCTT+AGG + Chr4:21741760-21741779 None:intergenic 30.0%
!!! CCCCACAAGTAATTTTTTTT+TGG + Chr4:21741163-21741182 None:intergenic 30.0%
!!! TTGCTGATTTTTAACACTAC+CGG - Chr4:21741419-21741438 MsG0480019532.01.T01:CDS 30.0%
AAAACTGTGCATTTGATGTG+AGG + Chr4:21740944-21740963 None:intergenic 35.0%
CAAATGTTGGTACATTTAGG+GGG - Chr4:21741786-21741805 MsG0480019532.01.T01:CDS 35.0%
GAGGGACTAAAATCAAATGT+TGG - Chr4:21741773-21741792 MsG0480019532.01.T01:CDS 35.0%
GATAATTCAGGAACAGTCAT+AGG + Chr4:21740434-21740453 None:intergenic 35.0%
GTAATGATGACTCTGCATAA+TGG - Chr4:21742088-21742107 MsG0480019532.01.T01:five_prime_UTR 35.0%
TGGTTTCTTCGCAAAAACAA+CGG - Chr4:21740523-21740542 MsG0480019532.01.T01:intron 35.0%
! AATGTTTAAGCTTGCTCTCA+AGG - Chr4:21740829-21740848 MsG0480019532.01.T01:intron 35.0%
! ACAATGGATTTCAAGAGCAA+TGG - Chr4:21740277-21740296 MsG0480019532.01.T01:CDS 35.0%
!! AAAGTGGGTTTTGCATGATT+GGG - Chr4:21741916-21741935 MsG0480019532.01.T01:exon 35.0%
ACTAACAAGTGGTGCAAAAC+AGG + Chr4:21740630-21740649 None:intergenic 40.0%
AGGGTGAAGTTTCAAAGATG+AGG + Chr4:21740456-21740475 None:intergenic 40.0%
ATCCACTCAGATGAGATTTG+GGG + Chr4:21741466-21741485 None:intergenic 40.0%
ATCCATGTTCTCTGGATATG+TGG - Chr4:21740660-21740679 MsG0480019532.01.T01:intron 40.0%
ATTCCAAACCCTCAAACACA+TGG + Chr4:21740862-21740881 None:intergenic 40.0%
CTCAGAGAACCATTTCTTAG+AGG + Chr4:21740690-21740709 None:intergenic 40.0%
GATCCACTCAGATGAGATTT+GGG + Chr4:21741467-21741486 None:intergenic 40.0%
GTAGATGCAATCCACAAACA+TGG - Chr4:21740404-21740423 MsG0480019532.01.T01:intron 40.0%
GTCAAAGTGCAATTGCAACT+CGG + Chr4:21742065-21742084 None:intergenic 40.0%
GTTGCAATTGCACTTTGACA+TGG - Chr4:21742066-21742085 MsG0480019532.01.T01:five_prime_UTR 40.0%
TCAAAATCAGCTGTGGAACT+AGG - Chr4:21740377-21740396 MsG0480019532.01.T01:CDS 40.0%
TCATAGGCTTTCCATGTTTG+TGG + Chr4:21740418-21740437 None:intergenic 40.0%
TTCGCAAAAACAACGGTGAA+AGG - Chr4:21740530-21740549 MsG0480019532.01.T01:intron 40.0%
TTGAGTAAAACAGCATCTGC+AGG + Chr4:21741049-21741068 None:intergenic 40.0%
TTTAGATCAACCACAGGTTG+TGG - Chr4:21740961-21740980 MsG0480019532.01.T01:intron 40.0%
! CTCTAAGAAATGGTTCTCTG+AGG - Chr4:21740688-21740707 MsG0480019532.01.T01:intron 40.0%
! GAATCTTTGGTTGATGTAGC+AGG - Chr4:21740878-21740897 MsG0480019532.01.T01:intron 40.0%
! GCACTCTATGAAAGTGCAAT+GGG - Chr4:21740722-21740741 MsG0480019532.01.T01:intron 40.0%
! GTTTGAGGGTTTGGAATCTT+TGG - Chr4:21740865-21740884 MsG0480019532.01.T01:intron 40.0%
! TGCACTCTATGAAAGTGCAA+TGG - Chr4:21740721-21740740 MsG0480019532.01.T01:intron 40.0%
!! CAAAGTGGGTTTTGCATGAT+TGG - Chr4:21741915-21741934 MsG0480019532.01.T01:exon 40.0%
!! TGTTTTGCACCACTTGTTAG+TGG - Chr4:21740629-21740648 MsG0480019532.01.T01:intron 40.0%
!!! CACAGTTTTAGATCAACCAC+AGG - Chr4:21740955-21740974 MsG0480019532.01.T01:intron 40.0%
!!! TGCAGATGCTGTTTTACTCA+AGG - Chr4:21741048-21741067 MsG0480019532.01.T01:intron 40.0%
AACGGTGAAAGGCAAAGAAG+GGG - Chr4:21740541-21740560 MsG0480019532.01.T01:intron 45.0%
ACAACGGTGAAAGGCAAAGA+AGG - Chr4:21740539-21740558 MsG0480019532.01.T01:intron 45.0%
AGAGACTTGAAGCCGCATAT+GGG + Chr4:21742184-21742203 None:intergenic 45.0%
AGTAAAACAGCATCTGCAGG+AGG + Chr4:21741046-21741065 None:intergenic 45.0%
AGTGCTTCATCCATGTTCTC+TGG - Chr4:21740652-21740671 MsG0480019532.01.T01:intron 45.0%
ATGGCACTCAAAATCAGCTG+TGG - Chr4:21740370-21740389 MsG0480019532.01.T01:CDS 45.0%
CAACGGTGAAAGGCAAAGAA+GGG - Chr4:21740540-21740559 MsG0480019532.01.T01:intron 45.0%
CAGGTTGTGGCTAACTTATC+TGG - Chr4:21740974-21740993 MsG0480019532.01.T01:intron 45.0%
CATTTGTGAATCAGCTGCCA+TGG + Chr4:21740813-21740832 None:intergenic 45.0%
CCTTCAAAGCTTCTCATCAG+TGG - Chr4:21740596-21740615 MsG0480019532.01.T01:intron 45.0%
GATAAGTTAGCCACAACCTG+TGG + Chr4:21740974-21740993 None:intergenic 45.0%
GGATCCACTCAGATGAGATT+TGG + Chr4:21741468-21741487 None:intergenic 45.0%
GTAAAACAGCATCTGCAGGA+GGG + Chr4:21741045-21741064 None:intergenic 45.0%
TGCCACATATCCAGAGAACA+TGG + Chr4:21740665-21740684 None:intergenic 45.0%
! CCACTGATGAGAAGCTTTGA+AGG + Chr4:21740599-21740618 None:intergenic 45.0%
! CTTTGGTTGATGTAGCAGGT+GGG - Chr4:21740882-21740901 MsG0480019532.01.T01:intron 45.0%
! GAAATGGTTCTCTGAGGAGA+AGG - Chr4:21740694-21740713 MsG0480019532.01.T01:intron 45.0%
! TCTTTGGTTGATGTAGCAGG+TGG - Chr4:21740881-21740900 MsG0480019532.01.T01:intron 45.0%
! TGAAGCACTCCACTAACAAG+TGG + Chr4:21740641-21740660 None:intergenic 45.0%
! TGTGGCACTCCTCTAAGAAA+TGG - Chr4:21740678-21740697 MsG0480019532.01.T01:intron 45.0%
! TTGCGCTTGCTAACACATGA+TGG - Chr4:21740503-21740522 MsG0480019532.01.T01:intron 45.0%
!! ACAGCTGATTTTGAGTGCCA+TGG + Chr4:21740371-21740390 None:intergenic 45.0%
!! CTGATGAGAAGCTTTGAAGG+AGG + Chr4:21740596-21740615 None:intergenic 45.0%
!! TAGTTTGTTTCAAGGGGCCA+TGG - Chr4:21740793-21740812 MsG0480019532.01.T01:intron 45.0%
!!! ATTAATTTTTCTAAATATAA+TGG + Chr4:21741328-21741347 None:intergenic 5.0%
CAGCCATGTGTTTGAGGGTT+TGG - Chr4:21740856-21740875 MsG0480019532.01.T01:intron 50.0%
GACTGCAGCCATGTGTTTGA+GGG - Chr4:21740851-21740870 MsG0480019532.01.T01:intron 50.0%
GAGAGACTTGAAGCCGCATA+TGG + Chr4:21742185-21742204 None:intergenic 50.0%
GCAAGCGCAAGAACCTATAG+AGG + Chr4:21740493-21740512 None:intergenic 50.0%
TGCCCCAAATCTCATCTGAG+TGG - Chr4:21741461-21741480 MsG0480019532.01.T01:CDS 50.0%
!! GCAATTTCTTCTCGGTGTCC+TGG - Chr4:21740171-21740190 MsG0480019532.01.T01:CDS 50.0%
GGACTGCAGCCATGTGTTTG+AGG - Chr4:21740850-21740869 MsG0480019532.01.T01:intron 55.0%
GTTGATGTAGCAGGTGGGAC+TGG - Chr4:21740887-21740906 MsG0480019532.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 21740134 21742222 21740134 ID=MsG0480019532.01;Name=MsG0480019532.01
Chr4 mRNA 21740134 21742222 21740134 ID=MsG0480019532.01.T01;Parent=MsG0480019532.01;Name=MsG0480019532.01.T01;_AED=0.36;_eAED=0.36;_QI=300|0|0.5|1|1|1|2|0|303
Chr4 exon 21740134 21740409 21740134 ID=MsG0480019532.01.T01:exon:8292;Parent=MsG0480019532.01.T01
Chr4 exon 21741287 21742222 21741287 ID=MsG0480019532.01.T01:exon:8291;Parent=MsG0480019532.01.T01
Chr4 five_prime_UTR 21741923 21742222 21741923 ID=MsG0480019532.01.T01:five_prime_utr;Parent=MsG0480019532.01.T01
Chr4 CDS 21741287 21741922 21741287 ID=MsG0480019532.01.T01:cds;Parent=MsG0480019532.01.T01
Chr4 CDS 21740134 21740409 21740134 ID=MsG0480019532.01.T01:cds;Parent=MsG0480019532.01.T01
Gene Sequence

>MsG0480019532.01.T01

ATGACTGTTCCTGAATTATCCTCATCTTTGAAACTTCACCCTTCTAAAGTTAATGTCCTCTATAGGTTCTTGCGCTTGCTAACACATGATGGTTTCTTCGCAAAAACAACGGTGAAAGGCAAAGAAGGGGAAGAAGAAGAAACAGCTTATGCTCTCACACCTCCTTCAAAGCTTCTCATCAGTGGTGAATCAACCTGTTTTGCACCACTTGTTAGTGGAGTGCTTCATCCATGTTCTCTGGATATGTGGCACTCCTCTAAGAAATGGTTCTCTGAGGAGAAGGATCTTGCACTCTATGAAAGTGCAATGGGAGAGACCTTTTTTAACTTTCTTAACAAAGATTCTGAATCTGATAAACTTAGTTTGTTTCAAGGGGCCATGGCAGCTGATTCACAAATGTTTAAGCTTGCTCTCAAGGACTGCAGCCATGTGTTTGAGGGTTTGGAATCTTTGGTTGATGTAGCAGGTGGGACTGGAGTTGTGTCAAAACTCATTCATGAAGAATTTCCTCACATCAAATGCACAGTTTTAGATCAACCACAGGTTGTGGCTAACTTATCTGGAACTCAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAATCTATCCCTCCTGCAGATGCTGTTTTACTCAAGCTCTCCTTAAAGATATTGAAGAACAGTAAAGAAGCAATTTCAAGAAAAGGGAAAAAAGGAAAGATAATAATCATAGACATATCAATTGATGAAACAAGTGATGATCGTGAGTTAACCGAGTTGCAATTGCACTTTGACATGGTAATGATGACTCTGCATAATGGAAAAGAAAGAGAAAAGAAAGAATGGAAGAAACTCATATATGATGCAGGCTTCAGCAGCTATAAGATTACTCCCATATGCGGCTTCAAGTCTCTCATAGAAGTTTATCCTTGA

Protein sequence

>MsG0480019532.01.T01

MTVPELSSSLKLHPSKVNVLYRFLRLLTHDGFFAKTTVKGKEGEEEETAYALTPPSKLLISGESTCFAPLVSGVLHPCSLDMWHSSKKWFSEEKDLALYESAMGETFFNFLNKDSESDKLSLFQGAMAADSQMFKLALKDCSHVFEGLESLVDVAGGTGVVSKLIHEEFPHIKCTVLDQPQVVANLSGTQNLNFVGGDMFKSIPPADAVLLKLSLKILKNSKEAISRKGKKGKIIIIDISIDETSDDRELTELQLHFDMVMMTLHNGKEREKKEWKKLIYDAGFSSYKITPICGFKSLIEVYP*