Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019532.01.T01 | XP_013455257.1 | 91.667 | 312 | 11 | 2 | 1 | 303 | 52 | 357 | 0 | 527 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019532.01.T01 | O24305 | 75.641 | 312 | 64 | 3 | 1 | 303 | 52 | 360 | 2.03E-168 | 474 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019532.01.T01 | Q06YR1 | 91.667 | 312 | 11 | 2 | 1 | 303 | 52 | 357 | 0.0 | 527 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049023.01 | MsG0480019532.01 | -0.801508 | 8.712118e-49 | 4.167962e-46 |
MsG0180001691.01 | MsG0480019532.01 | 0.804358 | 2.245228e-49 | 1.155271e-46 |
MsG0180003830.01 | MsG0480019532.01 | 0.816839 | 4.497381e-52 | 3.221960e-49 |
MsG0180003849.01 | MsG0480019532.01 | 0.818141 | 2.288091e-52 | 1.698743e-49 |
MsG0180005272.01 | MsG0480019532.01 | 0.829729 | 4.372510e-55 | 4.513907e-52 |
MsG0180005356.01 | MsG0480019532.01 | 0.814637 | 1.392397e-51 | 9.393267e-49 |
MsG0180005369.01 | MsG0480019532.01 | -0.802596 | 5.205139e-49 | 2.560039e-46 |
MsG0180006191.01 | MsG0480019532.01 | 0.804975 | 1.668342e-49 | 8.722374e-47 |
MsG0380014639.01 | MsG0480019532.01 | -0.837432 | 5.215080e-57 | 6.772988e-54 |
MsG0380014642.01 | MsG0480019532.01 | -0.805698 | 1.177291e-49 | 6.270644e-47 |
MsG0380014735.01 | MsG0480019532.01 | -0.805669 | 1.193771e-49 | 6.353416e-47 |
MsG0480019532.01 | MsG0480023244.01 | -0.820354 | 7.169204e-53 | 5.659496e-50 |
MsG0480019532.01 | MsG0580024719.01 | 0.832596 | 8.639336e-56 | 9.701755e-53 |
MsG0480019532.01 | MsG0580025682.01 | 0.804992 | 1.655304e-49 | 8.657617e-47 |
MsG0480019532.01 | MsG0680034301.01 | 0.805506 | 1.291803e-49 | 6.846053e-47 |
MsG0480019532.01 | MsG0680034333.01 | 0.811785 | 5.885686e-51 | 3.676766e-48 |
MsG0480019532.01 | MsG0680035584.01 | -0.821246 | 4.471914e-53 | 3.618669e-50 |
MsG0480019532.01 | MsG0780039287.01 | -0.800550 | 1.367444e-48 | 6.385235e-46 |
MsG0480019532.01 | MsG0780039947.01 | 0.819081 | 1.400722e-52 | 1.067251e-49 |
MsG0480019532.01 | MsG0780041180.01 | 0.832343 | 9.976491e-56 | 1.111870e-52 |
MsG0480019532.01 | MsG0780041316.01 | 0.826580 | 2.509190e-54 | 2.362555e-51 |
MsG0480019532.01 | MsG0780041691.01 | -0.807149 | 5.820310e-50 | 3.217479e-47 |
MsG0480019532.01 | MsG0880042122.01 | 0.803411 | 3.531657e-49 | 1.773477e-46 |
MsG0480019532.01 | MsG0880043212.01 | 0.813017 | 3.167304e-51 | 2.044832e-48 |
MsG0480019532.01 | MsG0880045852.01 | 0.814400 | 1.570496e-51 | 1.052757e-48 |
MsG0480019532.01 | MsG0880046010.01 | -0.801925 | 7.152300e-49 | 3.458085e-46 |
MsG0480019532.01 | MsG0880046137.01 | 0.810248 | 1.266820e-50 | 7.598151e-48 |
MsG0380016718.01 | MsG0480019532.01 | -0.814720 | 1.334262e-51 | 9.021396e-49 |
MsG0380017812.01 | MsG0480019532.01 | -0.814173 | 1.762727e-51 | 1.174286e-48 |
MsG0280006883.01 | MsG0480019532.01 | 0.801742 | 7.799754e-49 | 3.753469e-46 |
MsG0280010240.01 | MsG0480019532.01 | 0.837281 | 5.702358e-57 | 7.371092e-54 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019532.01.T01 | MTR_4g033170 | 91.667 | 312 | 11 | 2 | 1 | 303 | 52 | 357 | 0.0 | 527 |
MsG0480019532.01.T01 | MTR_4g033085 | 92.308 | 312 | 9 | 2 | 1 | 303 | 52 | 357 | 0.0 | 514 |
MsG0480019532.01.T01 | MTR_4g088200 | 74.679 | 312 | 68 | 2 | 1 | 303 | 52 | 361 | 5.18e-168 | 471 |
MsG0480019532.01.T01 | MTR_4g033200 | 75.399 | 313 | 66 | 3 | 1 | 303 | 52 | 363 | 4.78e-161 | 453 |
MsG0480019532.01.T01 | MTR_4g033015 | 74.760 | 313 | 68 | 3 | 1 | 303 | 52 | 363 | 1.75e-159 | 449 |
MsG0480019532.01.T01 | MTR_4g033150 | 73.482 | 313 | 72 | 3 | 1 | 303 | 52 | 363 | 1.51e-156 | 441 |
MsG0480019532.01.T01 | MTR_4g088190 | 74.441 | 313 | 70 | 2 | 1 | 303 | 52 | 364 | 5.40e-154 | 435 |
MsG0480019532.01.T01 | MTR_0794s0020 | 71.859 | 199 | 54 | 2 | 1 | 198 | 52 | 249 | 1.24e-102 | 300 |
MsG0480019532.01.T01 | MTR_7g014570 | 48.718 | 312 | 140 | 5 | 1 | 303 | 52 | 352 | 9.89e-97 | 289 |
MsG0480019532.01.T01 | MTR_7g014510 | 48.077 | 312 | 147 | 5 | 1 | 303 | 52 | 357 | 1.54e-95 | 286 |
MsG0480019532.01.T01 | MTR_4g088345 | 49.840 | 313 | 139 | 5 | 1 | 303 | 52 | 356 | 1.47e-92 | 279 |
MsG0480019532.01.T01 | MTR_1g076940 | 47.937 | 315 | 147 | 7 | 1 | 303 | 52 | 361 | 3.51e-92 | 278 |
MsG0480019532.01.T01 | MTR_7g024500 | 45.484 | 310 | 148 | 5 | 1 | 301 | 51 | 348 | 1.58e-89 | 271 |
MsG0480019532.01.T01 | MTR_5g074600 | 45.806 | 310 | 151 | 6 | 5 | 303 | 56 | 359 | 6.57e-88 | 267 |
MsG0480019532.01.T01 | MTR_4g088340 | 47.923 | 313 | 145 | 5 | 1 | 303 | 29 | 333 | 2.97e-87 | 265 |
MsG0480019532.01.T01 | MTR_5g074680 | 44.089 | 313 | 158 | 6 | 1 | 302 | 53 | 359 | 2.13e-84 | 258 |
MsG0480019532.01.T01 | MTR_7g024520 | 45.161 | 310 | 149 | 5 | 1 | 301 | 51 | 348 | 2.51e-83 | 255 |
MsG0480019532.01.T01 | MTR_5g074580 | 44.268 | 314 | 158 | 6 | 1 | 303 | 53 | 360 | 5.74e-82 | 252 |
MsG0480019532.01.T01 | MTR_5g074610 | 41.987 | 312 | 139 | 4 | 1 | 303 | 48 | 326 | 4.21e-78 | 241 |
MsG0480019532.01.T01 | MTR_4g079160 | 41.748 | 309 | 162 | 4 | 5 | 303 | 55 | 355 | 2.14e-75 | 235 |
MsG0480019532.01.T01 | MTR_5g074540 | 40.127 | 314 | 153 | 6 | 1 | 303 | 52 | 341 | 8.38e-74 | 230 |
MsG0480019532.01.T01 | MTR_1g076930 | 44.700 | 217 | 111 | 5 | 1 | 214 | 29 | 239 | 5.09e-51 | 169 |
MsG0480019532.01.T01 | MTR_3g083620 | 33.333 | 312 | 182 | 11 | 1 | 299 | 59 | 357 | 9.03e-36 | 132 |
MsG0480019532.01.T01 | MTR_0017s0100 | 30.380 | 316 | 197 | 9 | 1 | 303 | 63 | 368 | 3.21e-34 | 128 |
MsG0480019532.01.T01 | MTR_0079s0070 | 29.747 | 316 | 199 | 9 | 1 | 303 | 29 | 334 | 5.63e-32 | 121 |
MsG0480019532.01.T01 | MTR_4g038440 | 29.747 | 316 | 199 | 9 | 1 | 303 | 63 | 368 | 1.07e-31 | 121 |
MsG0480019532.01.T01 | MTR_1g096310 | 30.314 | 287 | 183 | 6 | 13 | 289 | 78 | 357 | 2.77e-31 | 120 |
MsG0480019532.01.T01 | MTR_1g036460 | 29.630 | 297 | 191 | 7 | 5 | 290 | 66 | 355 | 4.87e-31 | 119 |
MsG0480019532.01.T01 | MTR_1g036490 | 28.814 | 295 | 190 | 7 | 22 | 302 | 81 | 369 | 2.00e-30 | 118 |
MsG0480019532.01.T01 | MTR_7g012090 | 28.814 | 295 | 190 | 7 | 18 | 301 | 85 | 370 | 1.25e-29 | 116 |
MsG0480019532.01.T01 | MTR_7g012070 | 28.475 | 295 | 191 | 7 | 18 | 301 | 85 | 370 | 3.11e-29 | 115 |
MsG0480019532.01.T01 | MTR_7g011900 | 27.848 | 316 | 206 | 9 | 1 | 302 | 62 | 369 | 6.58e-29 | 114 |
MsG0480019532.01.T01 | MTR_5g098170 | 29.667 | 300 | 187 | 11 | 13 | 299 | 70 | 358 | 2.25e-28 | 112 |
MsG0480019532.01.T01 | MTR_1g036510 | 29.000 | 300 | 189 | 9 | 5 | 290 | 80 | 369 | 3.33e-28 | 112 |
MsG0480019532.01.T01 | MTR_7g012040 | 27.244 | 312 | 207 | 8 | 1 | 301 | 61 | 363 | 4.60e-28 | 111 |
MsG0480019532.01.T01 | MTR_7g011990 | 25.879 | 313 | 209 | 9 | 5 | 302 | 62 | 366 | 6.21e-28 | 111 |
MsG0480019532.01.T01 | MTR_3g092900 | 30.719 | 306 | 174 | 11 | 5 | 289 | 61 | 349 | 4.23e-27 | 108 |
MsG0480019532.01.T01 | MTR_2g072790 | 31.650 | 297 | 172 | 9 | 20 | 300 | 70 | 351 | 1.22e-26 | 107 |
MsG0480019532.01.T01 | MTR_2g055940 | 27.358 | 318 | 200 | 10 | 1 | 301 | 55 | 358 | 1.06e-25 | 105 |
MsG0480019532.01.T01 | MTR_7g012020 | 27.707 | 314 | 204 | 9 | 1 | 301 | 61 | 364 | 2.31e-24 | 101 |
MsG0480019532.01.T01 | MTR_7g118300 | 28.283 | 297 | 191 | 9 | 13 | 298 | 83 | 368 | 1.29e-23 | 99.8 |
MsG0480019532.01.T01 | MTR_8g068690 | 27.273 | 297 | 196 | 8 | 1 | 284 | 68 | 357 | 8.09e-23 | 97.4 |
MsG0480019532.01.T01 | MTR_0591s0010 | 26.936 | 297 | 197 | 8 | 1 | 284 | 69 | 358 | 1.47e-22 | 96.7 |
MsG0480019532.01.T01 | MTR_8g024160 | 29.600 | 250 | 158 | 6 | 50 | 288 | 71 | 313 | 1.72e-22 | 95.9 |
MsG0480019532.01.T01 | MTR_3g021430 | 29.000 | 300 | 186 | 11 | 13 | 298 | 64 | 350 | 3.08e-22 | 95.5 |
MsG0480019532.01.T01 | MTR_3g021440 | 28.472 | 288 | 188 | 7 | 13 | 290 | 77 | 356 | 4.88e-22 | 95.1 |
MsG0480019532.01.T01 | MTR_8g068750 | 27.519 | 258 | 168 | 7 | 50 | 295 | 120 | 370 | 5.09e-22 | 95.1 |
MsG0480019532.01.T01 | MTR_8g068870 | 25.890 | 309 | 208 | 9 | 1 | 295 | 55 | 356 | 2.82e-21 | 92.8 |
MsG0480019532.01.T01 | MTR_3g096050 | 26.936 | 297 | 191 | 9 | 20 | 302 | 73 | 357 | 1.54e-20 | 90.9 |
MsG0480019532.01.T01 | MTR_7g118320 | 28.000 | 250 | 162 | 6 | 50 | 288 | 105 | 347 | 5.64e-20 | 89.4 |
MsG0480019532.01.T01 | MTR_7g012020 | 28.507 | 221 | 149 | 6 | 1 | 217 | 61 | 276 | 1.17e-19 | 87.4 |
MsG0480019532.01.T01 | MTR_3g096070 | 27.751 | 209 | 134 | 5 | 92 | 288 | 117 | 320 | 1.73e-18 | 84.7 |
MsG0480019532.01.T01 | MTR_6g078850 | 24.800 | 250 | 170 | 6 | 50 | 288 | 126 | 368 | 3.25e-17 | 82.0 |
MsG0480019532.01.T01 | MTR_1g036510 | 29.302 | 215 | 140 | 7 | 5 | 214 | 80 | 287 | 3.23e-16 | 77.8 |
MsG0480019532.01.T01 | MTR_8g068730 | 32.738 | 168 | 96 | 6 | 142 | 295 | 174 | 338 | 9.05e-16 | 77.0 |
MsG0480019532.01.T01 | MTR_1g050220 | 31.724 | 145 | 95 | 2 | 143 | 287 | 147 | 287 | 1.28e-15 | 76.3 |
MsG0480019532.01.T01 | MTR_8g068570 | 30.409 | 171 | 106 | 3 | 110 | 270 | 150 | 317 | 6.12e-15 | 74.3 |
MsG0480019532.01.T01 | MTR_4g038440 | 26.512 | 215 | 150 | 4 | 1 | 213 | 63 | 271 | 6.57e-15 | 73.6 |
MsG0480019532.01.T01 | MTR_8g068600 | 28.049 | 164 | 113 | 3 | 50 | 212 | 94 | 253 | 2.76e-14 | 72.0 |
MsG0480019532.01.T01 | MTR_8g068620 | 33.945 | 109 | 70 | 1 | 104 | 212 | 4 | 110 | 5.44e-14 | 67.8 |
MsG0480019532.01.T01 | MTR_3g096050 | 28.856 | 201 | 131 | 6 | 20 | 217 | 73 | 264 | 1.09e-13 | 70.1 |
MsG0480019532.01.T01 | MTR_8g068690 | 25.116 | 215 | 154 | 5 | 1 | 212 | 68 | 278 | 4.52e-13 | 68.6 |
MsG0480019532.01.T01 | MTR_7g012020 | 28.042 | 189 | 127 | 6 | 1 | 185 | 61 | 244 | 1.94e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019532.01.T01 | AT4G35150 | 30.312 | 320 | 156 | 10 | 1 | 302 | 53 | 323 | 1.91e-29 | 114 |
MsG0480019532.01.T01 | AT4G35160 | 31.595 | 326 | 187 | 11 | 1 | 302 | 67 | 380 | 1.03e-27 | 111 |
MsG0480019532.01.T01 | AT5G54160 | 29.703 | 303 | 191 | 9 | 1 | 290 | 55 | 348 | 3.50e-26 | 106 |
MsG0480019532.01.T01 | AT1G51990 | 29.703 | 303 | 194 | 8 | 13 | 303 | 67 | 362 | 3.92e-25 | 103 |
MsG0480019532.01.T01 | AT1G51990 | 29.703 | 303 | 194 | 8 | 13 | 303 | 67 | 362 | 5.49e-24 | 100 |
MsG0480019532.01.T01 | AT1G77520 | 29.022 | 317 | 199 | 10 | 5 | 302 | 71 | 380 | 1.90e-23 | 99.4 |
MsG0480019532.01.T01 | AT3G53140 | 28.956 | 297 | 181 | 9 | 20 | 300 | 74 | 356 | 3.56e-23 | 98.2 |
MsG0480019532.01.T01 | AT1G33030 | 28.525 | 305 | 189 | 10 | 6 | 293 | 50 | 342 | 2.62e-22 | 95.9 |
MsG0480019532.01.T01 | AT5G53810 | 29.180 | 305 | 190 | 10 | 14 | 302 | 83 | 377 | 2.08e-19 | 87.8 |
MsG0480019532.01.T01 | AT1G63140 | 27.124 | 306 | 200 | 9 | 13 | 302 | 82 | 380 | 4.59e-17 | 81.3 |
MsG0480019532.01.T01 | AT1G63140 | 27.124 | 306 | 200 | 9 | 13 | 302 | 102 | 400 | 4.95e-17 | 81.3 |
MsG0480019532.01.T01 | AT1G77530 | 28.431 | 306 | 196 | 8 | 13 | 302 | 82 | 380 | 1.36e-15 | 77.0 |
MsG0480019532.01.T01 | AT1G62900 | 29.688 | 192 | 121 | 4 | 122 | 302 | 16 | 204 | 1.69e-14 | 71.2 |
MsG0480019532.01.T01 | AT1G76790 | 24.917 | 301 | 185 | 10 | 13 | 295 | 74 | 351 | 6.01e-13 | 68.9 |
Find 72 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATACATGTTTGTATAAA+TGG | 0.173388 | 4:+21742001 | None:intergenic |
ACTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4:+21740383 | None:intergenic |
TTCAAAGATGAGGATAATTC+AGG | 0.281306 | 4:+21741891 | None:intergenic |
CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4:-21741478 | MsG0480019532.01.T01:CDS |
GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4:-21741469 | MsG0480019532.01.T01:CDS |
TAGAGGACATTAACTTTAGA+AGG | 0.302430 | 4:+21741861 | None:intergenic |
CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4:+21741647 | None:intergenic |
CTAAAGTTAATGTCCTCTAT+AGG | 0.392708 | 4:-21741857 | MsG0480019532.01.T01:CDS |
ACTAACAAGTGGTGCAAAAC+AGG | 0.393012 | 4:+21741707 | None:intergenic |
AAAGAAGCAATTTCAAGAAA+AGG | 0.393418 | 4:-21740360 | MsG0480019532.01.T01:CDS |
CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4:+21741738 | None:intergenic |
AAAATAAAGCAATTTCTTCT+CGG | 0.394106 | 4:-21742171 | MsG0480019532.01.T01:five_prime_UTR |
AAGAAAGAGAAAAGAAAGAA+TGG | 0.396191 | 4:-21740221 | MsG0480019532.01.T01:CDS |
CAGGTTGTGGCTAACTTATC+TGG | 0.396383 | 4:-21741360 | MsG0480019532.01.T01:CDS |
GAGAGACTTGAAGCCGCATA+TGG | 0.397843 | 4:+21740152 | None:intergenic |
TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4:+21741919 | None:intergenic |
GATAAACTTAGTTTGTTTCA+AGG | 0.401061 | 4:-21741549 | MsG0480019532.01.T01:CDS |
GCAATTTCTTCTCGGTGTCC+TGG | 0.408733 | 4:-21742163 | MsG0480019532.01.T01:five_prime_UTR |
GATAATTCAGGAACAGTCAT+AGG | 0.424086 | 4:+21741903 | None:intergenic |
CAAAATTTGAACTTTGTTGG+TGG | 0.427047 | 4:-21741333 | MsG0480019532.01.T01:CDS |
ACTCAAAATTTGAACTTTGT+TGG | 0.429435 | 4:-21741336 | MsG0480019532.01.T01:CDS |
GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4:-21740246 | MsG0480019532.01.T01:CDS |
AAGAAGCAATTTCAAGAAAA+GGG | 0.443928 | 4:-21740359 | MsG0480019532.01.T01:CDS |
TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4:-21741656 | MsG0480019532.01.T01:CDS |
ATAAACTTAGTTTGTTTCAA+GGG | 0.456335 | 4:-21741548 | MsG0480019532.01.T01:CDS |
ACAACGGTGAAAGGCAAAGA+AGG | 0.456389 | 4:-21741795 | MsG0480019532.01.T01:CDS |
AGTGCTTCATCCATGTTCTC+TGG | 0.459421 | 4:-21741682 | MsG0480019532.01.T01:CDS |
GACTGCAGCCATGTGTTTGA+GGG | 0.460568 | 4:-21741483 | MsG0480019532.01.T01:CDS |
GTTGATGTAGCAGGTGGGAC+TGG | 0.460670 | 4:-21741447 | MsG0480019532.01.T01:CDS |
AATGTTTAAGCTTGCTCTCA+AGG | 0.478021 | 4:-21741505 | MsG0480019532.01.T01:CDS |
GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 4:-21741484 | MsG0480019532.01.T01:CDS |
GCACTCTATGAAAGTGCAAT+GGG | 0.484567 | 4:-21741612 | MsG0480019532.01.T01:CDS |
TCAAAATCAGCTGTGGAACT+AGG | 0.489529 | 4:-21741957 | MsG0480019532.01.T01:five_prime_UTR |
ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4:-21741674 | MsG0480019532.01.T01:CDS |
ATATATACATTTCAAAATCC+AGG | 0.502207 | 4:+21742145 | None:intergenic |
GAATCTTTGGTTGATGTAGC+AGG | 0.509095 | 4:-21741456 | MsG0480019532.01.T01:CDS |
TTTAGATCAACCACAGGTTG+TGG | 0.518679 | 4:-21741373 | MsG0480019532.01.T01:CDS |
TTGCGCTTGCTAACACATGA+TGG | 0.524871 | 4:-21741831 | MsG0480019532.01.T01:CDS |
TGCACTCTATGAAAGTGCAA+TGG | 0.543647 | 4:-21741613 | MsG0480019532.01.T01:CDS |
AAGAAACTCATATATGATGC+AGG | 0.545378 | 4:-21740198 | MsG0480019532.01.T01:CDS |
CAACGGTGAAAGGCAAAGAA+GGG | 0.548081 | 4:-21741794 | MsG0480019532.01.T01:CDS |
GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4:-21741640 | MsG0480019532.01.T01:CDS |
TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4:+21741288 | None:intergenic |
CATTTGTGAATCAGCTGCCA+TGG | 0.558343 | 4:+21741524 | None:intergenic |
TAAACTTAGTTTGTTTCAAG+GGG | 0.566712 | 4:-21741547 | MsG0480019532.01.T01:CDS |
AGGGTGAAGTTTCAAAGATG+AGG | 0.567354 | 4:+21741881 | None:intergenic |
AGAGACTTGAAGCCGCATAT+GGG | 0.571433 | 4:+21740153 | None:intergenic |
ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4:-21741983 | MsG0480019532.01.T01:five_prime_UTR |
ACAATGGATTTCAAGAGCAA+TGG | 0.576228 | 4:-21742057 | MsG0480019532.01.T01:five_prime_UTR |
GCAAGCGCAAGAACCTATAG+AGG | 0.576698 | 4:+21741844 | None:intergenic |
GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4:-21740268 | MsG0480019532.01.T01:CDS |
CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4:-21741738 | MsG0480019532.01.T01:CDS |
TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4:+21741672 | None:intergenic |
GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4:+21740272 | None:intergenic |
TAGTTTGTTTCAAGGGGCCA+TGG | 0.599443 | 4:-21741541 | MsG0480019532.01.T01:CDS |
AGAGGACATTAACTTTAGAA+GGG | 0.601048 | 4:+21741862 | None:intergenic |
AAGTTTAATCTATAAAACAA+TGG | 0.603893 | 4:-21742073 | MsG0480019532.01.T01:five_prime_UTR |
TCTTTGGTTGATGTAGCAGG+TGG | 0.609398 | 4:-21741453 | MsG0480019532.01.T01:CDS |
GATAAGTTAGCCACAACCTG+TGG | 0.609880 | 4:+21741363 | None:intergenic |
AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4:+21741291 | None:intergenic |
TATAAGATTACTCCCATATG+CGG | 0.627092 | 4:-21740165 | MsG0480019532.01.T01:CDS |
GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4:-21741930 | MsG0480019532.01.T01:five_prime_UTR |
AACGGTGAAAGGCAAAGAAG+GGG | 0.637209 | 4:-21741793 | MsG0480019532.01.T01:CDS |
GTATATGAAGTATATAAACA+AGG | 0.639784 | 4:+21742113 | None:intergenic |
ATGGCACTCAAAATCAGCTG+TGG | 0.642926 | 4:-21741964 | MsG0480019532.01.T01:five_prime_UTR |
ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4:+21741475 | None:intergenic |
CTTTGGTTGATGTAGCAGGT+GGG | 0.651080 | 4:-21741452 | MsG0480019532.01.T01:CDS |
AAAACTGTGCATTTGATGTG+AGG | 0.654544 | 4:+21741393 | None:intergenic |
TGAAGCACTCCACTAACAAG+TGG | 0.666600 | 4:+21741696 | None:intergenic |
CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4:-21741646 | MsG0480019532.01.T01:CDS |
GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4:+21741292 | None:intergenic |
CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4:+21741741 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATATTATTTTAATTTAT+TGG | - | Chr4:21741848-21741867 | MsG0480019532.01.T01:CDS | 0.0% |
!! | AAAATTCATATTTAATTCAT+TGG | + | Chr4:21741541-21741560 | None:intergenic | 10.0% |
!! | ATTTCATTAAAAAAATATGA+AGG | - | Chr4:21741666-21741685 | MsG0480019532.01.T01:CDS | 10.0% |
!!! | AATATGAATTTTTATGTTTT+TGG | - | Chr4:21741549-21741568 | MsG0480019532.01.T01:CDS | 10.0% |
!!! | ATTTTACAATTTTATTTCTT+TGG | + | Chr4:21741830-21741849 | None:intergenic | 10.0% |
!!! | TTATTTTATGTCTTATTTTT+AGG | + | Chr4:21740150-21740169 | None:intergenic | 10.0% |
!!! | TTTTACAATTTTATTTCTTT+GGG | + | Chr4:21741829-21741848 | None:intergenic | 10.0% |
!! | AAGTTTAATCTATAAAACAA+TGG | - | Chr4:21740261-21740280 | MsG0480019532.01.T01:CDS | 15.0% |
!! | TTTGTTAAGAAAGTTAAAAA+AGG | + | Chr4:21740753-21740772 | None:intergenic | 15.0% |
!! | AAAATAAAGCAATTTCTTCT+CGG | - | Chr4:21740163-21740182 | MsG0480019532.01.T01:CDS | 20.0% |
!! | ACAAATTTATATCTTTGATC+AGG | + | Chr4:21741494-21741513 | None:intergenic | 20.0% |
!! | AGGTGATAAAATAATAACAT+CGG | - | Chr4:21741231-21741250 | MsG0480019532.01.T01:intron | 20.0% |
!! | ATATATACATTTCAAAATCC+AGG | + | Chr4:21740192-21740211 | None:intergenic | 20.0% |
!! | ATCCAAAAAAAAATTACTTG+TGG | - | Chr4:21741158-21741177 | MsG0480019532.01.T01:intron | 20.0% |
!! | CAAAATAAAATGGAATCAAA+TGG | + | Chr4:21741098-21741117 | None:intergenic | 20.0% |
!! | GTATATGAAGTATATAAACA+AGG | + | Chr4:21740224-21740243 | None:intergenic | 20.0% |
!! | TATGTTCTGATTTCATAATT+AGG | - | Chr4:21741124-21741143 | MsG0480019532.01.T01:intron | 20.0% |
!! | TCCAAAAAAAAATTACTTGT+GGG | - | Chr4:21741159-21741178 | MsG0480019532.01.T01:intron | 20.0% |
!! | TGATCAAAGATATAAATTTG+TGG | - | Chr4:21741493-21741512 | MsG0480019532.01.T01:CDS | 20.0% |
!! | TGTATACATGTTTGTATAAA+TGG | + | Chr4:21740336-21740355 | None:intergenic | 20.0% |
!!! | ACGTAAGAACAATTTTTATT+TGG | + | Chr4:21741366-21741385 | None:intergenic | 20.0% |
!!! | ATAAACTTAGTTTGTTTCAA+GGG | - | Chr4:21740786-21740805 | MsG0480019532.01.T01:intron | 20.0% |
!!! | TCATAGATGAAAAATTTTGA+GGG | - | Chr4:21741726-21741745 | MsG0480019532.01.T01:CDS | 20.0% |
!!! | TTCATAGATGAAAAATTTTG+AGG | - | Chr4:21741725-21741744 | MsG0480019532.01.T01:CDS | 20.0% |
! | AAAGAAGCAATTTCAAGAAA+AGG | - | Chr4:21741974-21741993 | MsG0480019532.01.T01:five_prime_UTR | 25.0% |
! | AAGAAAGAGAAAAGAAAGAA+TGG | - | Chr4:21742113-21742132 | MsG0480019532.01.T01:five_prime_UTR | 25.0% |
! | AAGAAGCAATTTCAAGAAAA+GGG | - | Chr4:21741975-21741994 | MsG0480019532.01.T01:five_prime_UTR | 25.0% |
! | AATCAAATGTTGGTACATTT+AGG | - | Chr4:21741783-21741802 | MsG0480019532.01.T01:CDS | 25.0% |
! | ACTCAAAATTTGAACTTTGT+TGG | - | Chr4:21740998-21741017 | MsG0480019532.01.T01:intron | 25.0% |
! | ACTGTTCTTCAATATCTTTA+AGG | + | Chr4:21741954-21741973 | None:intergenic | 25.0% |
! | ATCAAATGTTGGTACATTTA+GGG | - | Chr4:21741784-21741803 | MsG0480019532.01.T01:CDS | 25.0% |
! | ATTATGAAATCAGAACATAC+AGG | + | Chr4:21741123-21741142 | None:intergenic | 25.0% |
! | ATTTCAAGAAAAGGGAAAAA+AGG | - | Chr4:21741983-21742002 | MsG0480019532.01.T01:five_prime_UTR | 25.0% |
! | CAAAAAAAAATTACTTGTGG+GGG | - | Chr4:21741161-21741180 | MsG0480019532.01.T01:intron | 25.0% |
! | CCAAAAAAAAATTACTTGTG+GGG | - | Chr4:21741160-21741179 | MsG0480019532.01.T01:intron | 25.0% |
! | TTATGAAATCAGAACATACA+GGG | + | Chr4:21741122-21741141 | None:intergenic | 25.0% |
!!! | AAGCCTAAGAAATATTTTAG+AGG | - | Chr4:21741754-21741773 | MsG0480019532.01.T01:CDS | 25.0% |
!!! | AGCCTAAGAAATATTTTAGA+GGG | - | Chr4:21741755-21741774 | MsG0480019532.01.T01:CDS | 25.0% |
!!! | ATAAGTTTTGACTAAAACGT+AGG | - | Chr4:21741695-21741714 | MsG0480019532.01.T01:CDS | 25.0% |
!!! | CATAATTTTTAGCAATGTGT+AGG | - | Chr4:21741211-21741230 | MsG0480019532.01.T01:intron | 25.0% |
!!! | GATAAACTTAGTTTGTTTCA+AGG | - | Chr4:21740785-21740804 | MsG0480019532.01.T01:intron | 25.0% |
!!! | TAAACTTAGTTTGTTTCAAG+GGG | - | Chr4:21740787-21740806 | MsG0480019532.01.T01:intron | 25.0% |
!!! | TAAGTTTTGACTAAAACGTA+GGG | - | Chr4:21741696-21741715 | MsG0480019532.01.T01:CDS | 25.0% |
AAGAAACTCATATATGATGC+AGG | - | Chr4:21742136-21742155 | MsG0480019532.01.T01:five_prime_UTR | 30.0% | |
ATCTCAAATGTCTTTCAAAG+TGG | - | Chr4:21741900-21741919 | MsG0480019532.01.T01:CDS | 30.0% | |
CAAAATTTGAACTTTGTTGG+TGG | - | Chr4:21741001-21741020 | MsG0480019532.01.T01:intron | 30.0% | |
CATACAGGGACAAAATAAAA+TGG | + | Chr4:21741108-21741127 | None:intergenic | 30.0% | |
CATACATAGAGAGATATTTC+CGG | + | Chr4:21741441-21741460 | None:intergenic | 30.0% | |
CTAAAGTTAATGTCCTCTAT+AGG | - | Chr4:21740477-21740496 | MsG0480019532.01.T01:intron | 30.0% | |
TAGAGGACATTAACTTTAGA+AGG | + | Chr4:21740476-21740495 | None:intergenic | 30.0% | |
TATAAGATTACTCCCATATG+CGG | - | Chr4:21742169-21742188 | MsG0480019532.01.T01:five_prime_UTR | 30.0% | |
TCAAATGTTGGTACATTTAG+GGG | - | Chr4:21741785-21741804 | MsG0480019532.01.T01:CDS | 30.0% | |
TCTCAAATGTCTTTCAAAGT+GGG | - | Chr4:21741901-21741920 | MsG0480019532.01.T01:CDS | 30.0% | |
TTCAAAGATGAGGATAATTC+AGG | + | Chr4:21740446-21740465 | None:intergenic | 30.0% | |
TTTATATCTTTGATCAGGCA+CGG | + | Chr4:21741489-21741508 | None:intergenic | 30.0% | |
! | AGAGGACATTAACTTTAGAA+GGG | + | Chr4:21740475-21740494 | None:intergenic | 30.0% |
! | ATACAGCTTTATAAGTTCCA+TGG | - | Chr4:21740351-21740370 | MsG0480019532.01.T01:CDS | 30.0% |
! | CTTTGGGTTAAATACGTAAA+TGG | + | Chr4:21741813-21741832 | None:intergenic | 30.0% |
!! | GTCCCTCTAAAATATTTCTT+AGG | + | Chr4:21741760-21741779 | None:intergenic | 30.0% |
!!! | CCCCACAAGTAATTTTTTTT+TGG | + | Chr4:21741163-21741182 | None:intergenic | 30.0% |
!!! | TTGCTGATTTTTAACACTAC+CGG | - | Chr4:21741419-21741438 | MsG0480019532.01.T01:CDS | 30.0% |
AAAACTGTGCATTTGATGTG+AGG | + | Chr4:21740944-21740963 | None:intergenic | 35.0% | |
CAAATGTTGGTACATTTAGG+GGG | - | Chr4:21741786-21741805 | MsG0480019532.01.T01:CDS | 35.0% | |
GAGGGACTAAAATCAAATGT+TGG | - | Chr4:21741773-21741792 | MsG0480019532.01.T01:CDS | 35.0% | |
GATAATTCAGGAACAGTCAT+AGG | + | Chr4:21740434-21740453 | None:intergenic | 35.0% | |
GTAATGATGACTCTGCATAA+TGG | - | Chr4:21742088-21742107 | MsG0480019532.01.T01:five_prime_UTR | 35.0% | |
TGGTTTCTTCGCAAAAACAA+CGG | - | Chr4:21740523-21740542 | MsG0480019532.01.T01:intron | 35.0% | |
! | AATGTTTAAGCTTGCTCTCA+AGG | - | Chr4:21740829-21740848 | MsG0480019532.01.T01:intron | 35.0% |
! | ACAATGGATTTCAAGAGCAA+TGG | - | Chr4:21740277-21740296 | MsG0480019532.01.T01:CDS | 35.0% |
!! | AAAGTGGGTTTTGCATGATT+GGG | - | Chr4:21741916-21741935 | MsG0480019532.01.T01:exon | 35.0% |
ACTAACAAGTGGTGCAAAAC+AGG | + | Chr4:21740630-21740649 | None:intergenic | 40.0% | |
AGGGTGAAGTTTCAAAGATG+AGG | + | Chr4:21740456-21740475 | None:intergenic | 40.0% | |
ATCCACTCAGATGAGATTTG+GGG | + | Chr4:21741466-21741485 | None:intergenic | 40.0% | |
ATCCATGTTCTCTGGATATG+TGG | - | Chr4:21740660-21740679 | MsG0480019532.01.T01:intron | 40.0% | |
ATTCCAAACCCTCAAACACA+TGG | + | Chr4:21740862-21740881 | None:intergenic | 40.0% | |
CTCAGAGAACCATTTCTTAG+AGG | + | Chr4:21740690-21740709 | None:intergenic | 40.0% | |
GATCCACTCAGATGAGATTT+GGG | + | Chr4:21741467-21741486 | None:intergenic | 40.0% | |
GTAGATGCAATCCACAAACA+TGG | - | Chr4:21740404-21740423 | MsG0480019532.01.T01:intron | 40.0% | |
GTCAAAGTGCAATTGCAACT+CGG | + | Chr4:21742065-21742084 | None:intergenic | 40.0% | |
GTTGCAATTGCACTTTGACA+TGG | - | Chr4:21742066-21742085 | MsG0480019532.01.T01:five_prime_UTR | 40.0% | |
TCAAAATCAGCTGTGGAACT+AGG | - | Chr4:21740377-21740396 | MsG0480019532.01.T01:CDS | 40.0% | |
TCATAGGCTTTCCATGTTTG+TGG | + | Chr4:21740418-21740437 | None:intergenic | 40.0% | |
TTCGCAAAAACAACGGTGAA+AGG | - | Chr4:21740530-21740549 | MsG0480019532.01.T01:intron | 40.0% | |
TTGAGTAAAACAGCATCTGC+AGG | + | Chr4:21741049-21741068 | None:intergenic | 40.0% | |
TTTAGATCAACCACAGGTTG+TGG | - | Chr4:21740961-21740980 | MsG0480019532.01.T01:intron | 40.0% | |
! | CTCTAAGAAATGGTTCTCTG+AGG | - | Chr4:21740688-21740707 | MsG0480019532.01.T01:intron | 40.0% |
! | GAATCTTTGGTTGATGTAGC+AGG | - | Chr4:21740878-21740897 | MsG0480019532.01.T01:intron | 40.0% |
! | GCACTCTATGAAAGTGCAAT+GGG | - | Chr4:21740722-21740741 | MsG0480019532.01.T01:intron | 40.0% |
! | GTTTGAGGGTTTGGAATCTT+TGG | - | Chr4:21740865-21740884 | MsG0480019532.01.T01:intron | 40.0% |
! | TGCACTCTATGAAAGTGCAA+TGG | - | Chr4:21740721-21740740 | MsG0480019532.01.T01:intron | 40.0% |
!! | CAAAGTGGGTTTTGCATGAT+TGG | - | Chr4:21741915-21741934 | MsG0480019532.01.T01:exon | 40.0% |
!! | TGTTTTGCACCACTTGTTAG+TGG | - | Chr4:21740629-21740648 | MsG0480019532.01.T01:intron | 40.0% |
!!! | CACAGTTTTAGATCAACCAC+AGG | - | Chr4:21740955-21740974 | MsG0480019532.01.T01:intron | 40.0% |
!!! | TGCAGATGCTGTTTTACTCA+AGG | - | Chr4:21741048-21741067 | MsG0480019532.01.T01:intron | 40.0% |
AACGGTGAAAGGCAAAGAAG+GGG | - | Chr4:21740541-21740560 | MsG0480019532.01.T01:intron | 45.0% | |
ACAACGGTGAAAGGCAAAGA+AGG | - | Chr4:21740539-21740558 | MsG0480019532.01.T01:intron | 45.0% | |
AGAGACTTGAAGCCGCATAT+GGG | + | Chr4:21742184-21742203 | None:intergenic | 45.0% | |
AGTAAAACAGCATCTGCAGG+AGG | + | Chr4:21741046-21741065 | None:intergenic | 45.0% | |
AGTGCTTCATCCATGTTCTC+TGG | - | Chr4:21740652-21740671 | MsG0480019532.01.T01:intron | 45.0% | |
ATGGCACTCAAAATCAGCTG+TGG | - | Chr4:21740370-21740389 | MsG0480019532.01.T01:CDS | 45.0% | |
CAACGGTGAAAGGCAAAGAA+GGG | - | Chr4:21740540-21740559 | MsG0480019532.01.T01:intron | 45.0% | |
CAGGTTGTGGCTAACTTATC+TGG | - | Chr4:21740974-21740993 | MsG0480019532.01.T01:intron | 45.0% | |
CATTTGTGAATCAGCTGCCA+TGG | + | Chr4:21740813-21740832 | None:intergenic | 45.0% | |
CCTTCAAAGCTTCTCATCAG+TGG | - | Chr4:21740596-21740615 | MsG0480019532.01.T01:intron | 45.0% | |
GATAAGTTAGCCACAACCTG+TGG | + | Chr4:21740974-21740993 | None:intergenic | 45.0% | |
GGATCCACTCAGATGAGATT+TGG | + | Chr4:21741468-21741487 | None:intergenic | 45.0% | |
GTAAAACAGCATCTGCAGGA+GGG | + | Chr4:21741045-21741064 | None:intergenic | 45.0% | |
TGCCACATATCCAGAGAACA+TGG | + | Chr4:21740665-21740684 | None:intergenic | 45.0% | |
! | CCACTGATGAGAAGCTTTGA+AGG | + | Chr4:21740599-21740618 | None:intergenic | 45.0% |
! | CTTTGGTTGATGTAGCAGGT+GGG | - | Chr4:21740882-21740901 | MsG0480019532.01.T01:intron | 45.0% |
! | GAAATGGTTCTCTGAGGAGA+AGG | - | Chr4:21740694-21740713 | MsG0480019532.01.T01:intron | 45.0% |
! | TCTTTGGTTGATGTAGCAGG+TGG | - | Chr4:21740881-21740900 | MsG0480019532.01.T01:intron | 45.0% |
! | TGAAGCACTCCACTAACAAG+TGG | + | Chr4:21740641-21740660 | None:intergenic | 45.0% |
! | TGTGGCACTCCTCTAAGAAA+TGG | - | Chr4:21740678-21740697 | MsG0480019532.01.T01:intron | 45.0% |
! | TTGCGCTTGCTAACACATGA+TGG | - | Chr4:21740503-21740522 | MsG0480019532.01.T01:intron | 45.0% |
!! | ACAGCTGATTTTGAGTGCCA+TGG | + | Chr4:21740371-21740390 | None:intergenic | 45.0% |
!! | CTGATGAGAAGCTTTGAAGG+AGG | + | Chr4:21740596-21740615 | None:intergenic | 45.0% |
!! | TAGTTTGTTTCAAGGGGCCA+TGG | - | Chr4:21740793-21740812 | MsG0480019532.01.T01:intron | 45.0% |
!!! | ATTAATTTTTCTAAATATAA+TGG | + | Chr4:21741328-21741347 | None:intergenic | 5.0% |
CAGCCATGTGTTTGAGGGTT+TGG | - | Chr4:21740856-21740875 | MsG0480019532.01.T01:intron | 50.0% | |
GACTGCAGCCATGTGTTTGA+GGG | - | Chr4:21740851-21740870 | MsG0480019532.01.T01:intron | 50.0% | |
GAGAGACTTGAAGCCGCATA+TGG | + | Chr4:21742185-21742204 | None:intergenic | 50.0% | |
GCAAGCGCAAGAACCTATAG+AGG | + | Chr4:21740493-21740512 | None:intergenic | 50.0% | |
TGCCCCAAATCTCATCTGAG+TGG | - | Chr4:21741461-21741480 | MsG0480019532.01.T01:CDS | 50.0% | |
!! | GCAATTTCTTCTCGGTGTCC+TGG | - | Chr4:21740171-21740190 | MsG0480019532.01.T01:CDS | 50.0% |
GGACTGCAGCCATGTGTTTG+AGG | - | Chr4:21740850-21740869 | MsG0480019532.01.T01:intron | 55.0% | |
GTTGATGTAGCAGGTGGGAC+TGG | - | Chr4:21740887-21740906 | MsG0480019532.01.T01:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 21740134 | 21742222 | 21740134 | ID=MsG0480019532.01;Name=MsG0480019532.01 |
Chr4 | mRNA | 21740134 | 21742222 | 21740134 | ID=MsG0480019532.01.T01;Parent=MsG0480019532.01;Name=MsG0480019532.01.T01;_AED=0.36;_eAED=0.36;_QI=300|0|0.5|1|1|1|2|0|303 |
Chr4 | exon | 21740134 | 21740409 | 21740134 | ID=MsG0480019532.01.T01:exon:8292;Parent=MsG0480019532.01.T01 |
Chr4 | exon | 21741287 | 21742222 | 21741287 | ID=MsG0480019532.01.T01:exon:8291;Parent=MsG0480019532.01.T01 |
Chr4 | five_prime_UTR | 21741923 | 21742222 | 21741923 | ID=MsG0480019532.01.T01:five_prime_utr;Parent=MsG0480019532.01.T01 |
Chr4 | CDS | 21741287 | 21741922 | 21741287 | ID=MsG0480019532.01.T01:cds;Parent=MsG0480019532.01.T01 |
Chr4 | CDS | 21740134 | 21740409 | 21740134 | ID=MsG0480019532.01.T01:cds;Parent=MsG0480019532.01.T01 |
Gene Sequence |
Protein sequence |