AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014735.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014735.01.T01 MTR_3g463080 93.148 540 11 2 1 538 1 516 0.0 966
MsG0380014735.01.T01 MTR_8g030600 65.586 555 138 6 13 538 58 588 0.0 719
MsG0380014735.01.T01 MTR_7g077830 75.055 457 88 2 84 538 102 534 0.0 717
MsG0380014735.01.T01 MTR_8g030600 68.537 410 97 4 55 456 121 506 0.0 575
MsG0380014735.01.T01 MTR_7g066780 36.047 516 301 5 25 537 17 506 2.22e-106 328
MsG0380014735.01.T01 MTR_4g116030 36.648 543 293 13 14 534 11 524 2.54e-104 323
MsG0380014735.01.T01 MTR_2g027710 82.759 174 30 0 328 501 61 234 1.22e-103 312
MsG0380014735.01.T01 MTR_5g069630 38.732 426 230 3 118 536 111 512 2.36e-90 287
MsG0380014735.01.T01 MTR_4g030900 35.914 465 246 8 101 538 4 443 7.36e-78 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014735.01.T01 AT2G29650 73.752 541 110 5 1 538 1 512 0.0 764
MsG0380014735.01.T01 AT4G00370 72.860 479 102 3 64 538 87 541 0.0 716
MsG0380014735.01.T01 AT2G29650 82.297 418 50 1 121 538 7 400 0.0 695
MsG0380014735.01.T01 AT2G29650 82.609 414 48 1 125 538 1 390 0.0 689
MsG0380014735.01.T01 AT2G29650 68.056 432 96 6 1 424 1 398 0.0 546
MsG0380014735.01.T01 AT2G38060 37.571 527 283 9 31 536 10 511 1.59e-106 328
MsG0380014735.01.T01 AT5G20380 40.135 446 233 8 96 534 90 508 4.20e-100 312
MsG0380014735.01.T01 AT3G46980 37.652 494 271 6 56 536 58 527 4.54e-100 312
MsG0380014735.01.T01 AT3G46980 37.652 494 271 6 56 536 58 527 5.84e-100 312
MsG0380014735.01.T01 AT3G46980 37.652 494 271 6 56 536 106 575 1.22e-99 313
MsG0380014735.01.T01 AT5G20380 40.135 446 233 8 96 534 142 560 1.31e-99 312
MsG0380014735.01.T01 AT2G38060 38.249 434 233 5 60 483 49 457 1.90e-89 286
MsG0380014735.01.T01 AT3G46980 37.736 371 199 4 174 536 1 347 2.78e-77 248
MsG0380014735.01.T01 AT3G46980 37.736 371 199 4 174 536 1 347 2.78e-77 248
MsG0380014735.01.T01 AT3G46980 37.736 371 199 4 174 536 1 347 2.90e-77 248
MsG0380014735.01.T01 AT3G46980 37.736 371 199 4 174 536 1 347 2.90e-77 248
MsG0380014735.01.T01 AT5G44370 34.437 453 254 8 102 538 7 432 9.69e-75 243
MsG0380014735.01.T01 AT3G46980 37.943 282 167 3 263 536 2 283 1.41e-59 199

Find 153 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATTTCCCACCAAATA+TGG 0.180418 3:+58985280 None:intergenic
TAGTACAGTCTTCTTTCTTT+TGG 0.193133 3:-58988613 MsG0380014735.01.T01:CDS
ATGGCAATTTCTGCAAATTT+TGG 0.205166 3:-58986976 MsG0380014735.01.T01:CDS
TGAATAATATTCTGTCAAAA+TGG 0.210887 3:-58988159 MsG0380014735.01.T01:CDS
GGCAAAAGTGGGACACTATC+AGG 0.253332 3:+58987705 None:intergenic
GGTTTCAGTTGGGTTGTATT+TGG 0.264456 3:-58985622 MsG0380014735.01.T01:CDS
CCTTTCCTAATTCATCAGTA+TGG 0.283806 3:-58988052 MsG0380014735.01.T01:CDS
GGAGTACTGGCTGGTGTTCT+TGG 0.289102 3:-58985915 MsG0380014735.01.T01:CDS
GCGTGACAAAGTATCAATTA+TGG 0.289541 3:+58985535 None:intergenic
AAGTTCAATCTTACAGAATC+TGG 0.297006 3:-58987027 MsG0380014735.01.T01:CDS
ACAGATATCACTGGCAATAT+CGG 0.305990 3:+58988289 None:intergenic
TGCAGATTGCTGGTGGAATA+TGG 0.310507 3:-58988481 MsG0380014735.01.T01:intron
GCCATCCATACTGATGAATT+AGG 0.315173 3:+58988047 None:intergenic
GTTTGGCAGCTACGGGAGTT+AGG 0.354746 3:+58988393 None:intergenic
ATAACAATAACCCATCTCTT+AGG 0.357009 3:+58989914 None:intergenic
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3:-58988354 MsG0380014735.01.T01:CDS
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3:+58988376 None:intergenic
ATCAAATACTGCTGGAGTAC+TGG 0.389793 3:-58985928 MsG0380014735.01.T01:CDS
GAACAAGAAGATATACAATA+AGG 0.394097 3:+58985309 None:intergenic
TATTTCCTTCACGGGTTCCT+TGG 0.398704 3:+58987766 None:intergenic
ATCGAGGAGCTATATCTTGA+TGG 0.399456 3:+58986136 None:intergenic
CCAACAACGACTCGTGTAAT+CGG 0.400415 3:+58985366 None:intergenic
ACAAAATTTACCAATTTGTC+CGG 0.400952 3:+58985413 None:intergenic
AGATACTTGTTGCAGATTGC+TGG 0.402333 3:-58988491 MsG0380014735.01.T01:intron
TCAGTTGGGTTGTATTTGGT+TGG 0.409031 3:-58985618 MsG0380014735.01.T01:CDS
TTGGTTCTCTAGGAACAGTT+TGG 0.409152 3:-58988006 MsG0380014735.01.T01:CDS
CAATGTCAGCAGAGTACAAC+TGG 0.414950 3:-58988655 MsG0380014735.01.T01:CDS
ACACGAGTCGTTGTTGGCCT+TGG 0.418669 3:-58985360 MsG0380014735.01.T01:three_prime_UTR
TGTCACAAAATTGATGTGTT+TGG 0.419451 3:+58985210 None:intergenic
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3:-58988347 MsG0380014735.01.T01:CDS
TAAGAAAGTAGTAAGTGGTT+TGG 0.423850 3:-58989993 MsG0380014735.01.T01:CDS
CCGATTACACGAGTCGTTGT+TGG 0.436540 3:-58985366 MsG0380014735.01.T01:three_prime_UTR
AAGAAGTTGATTGCTACAAA+TGG 0.439320 3:-58987794 MsG0380014735.01.T01:CDS
GAACTTTCATTCTTCTTACA+TGG 0.440920 3:-58987673 MsG0380014735.01.T01:CDS
GGTGATGATGTTGAGGTAGA+AGG 0.444357 3:-58989968 MsG0380014735.01.T01:CDS
ACCCGTGAAGGAAATACCTT+GGG 0.444558 3:-58987759 MsG0380014735.01.T01:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3:-58988158 MsG0380014735.01.T01:CDS
CCCCAAGGTATTTCCTTCAC+GGG 0.446389 3:+58987758 None:intergenic
TCCCCAAGGTATTTCCTTCA+CGG 0.451370 3:+58987757 None:intergenic
CAATCCAAGTTTGGCAGCTA+CGG 0.451750 3:+58988385 None:intergenic
ACTCCCGTAGCTGCCAAACT+TGG 0.453418 3:-58988389 MsG0380014735.01.T01:CDS
ATGAATTTCCCACCAAATAT+GGG 0.454669 3:+58985281 None:intergenic
CTTACTTGATTATAGTATGT+TGG 0.458288 3:+58987647 None:intergenic
TGGAATATGGGCGGACACAG+TGG 0.462133 3:-58988468 MsG0380014735.01.T01:CDS
ATGAATTAGGAAAGGTGAAA+AGG 0.468146 3:+58988060 None:intergenic
ACACCTTCCCTCTTCCTCTC+CGG 0.472346 3:+58990083 None:intergenic
GTTCTTGGAACAGCAGCTAC+AGG 0.479933 3:-58985900 MsG0380014735.01.T01:CDS
CTGTGTCACCGGAGAGGAAG+AGG 0.479989 3:-58990091 MsG0380014735.01.T01:CDS
TTCCCCAGTTGTGGCAAAAG+TGG 0.480489 3:+58987693 None:intergenic
TAGCATTTGGCGTCATTTGG+TGG 0.480914 3:-58988430 MsG0380014735.01.T01:CDS
TCGTTGTTGGCCTTGGAAGA+AGG 0.483485 3:-58985353 MsG0380014735.01.T01:three_prime_UTR
GTTGGCCTTGGAAGAAGGAT+TGG 0.485773 3:-58985348 MsG0380014735.01.T01:three_prime_UTR
CTCGGTCTATCAAATACTGC+TGG 0.486023 3:-58985936 MsG0380014735.01.T01:CDS
CAGATATCACTGGCAATATC+GGG 0.486619 3:+58988290 None:intergenic
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3:-58988185 MsG0380014735.01.T01:intron
CCTTGGATCGGTCACTGGAT+TGG 0.489429 3:-58988083 MsG0380014735.01.T01:CDS
TCATACTTACTTGATGCCTC+TGG 0.490752 3:+58990031 None:intergenic
CCCGAGGTGTATCTGTTACA+AGG 0.491771 3:-58986927 MsG0380014735.01.T01:CDS
CATTGCACCTGCTGTGTCAC+CGG 0.492613 3:-58990102 MsG0380014735.01.T01:CDS
TTCCTCTCCGGTGACACAGC+AGG 0.496137 3:+58990095 None:intergenic
AGTTGAGTTAAGAAGAAAGC+AGG 0.501347 3:+58986776 None:intergenic
GTTGTGTATGACTTGCAGTC+AGG 0.504023 3:-58986723 MsG0380014735.01.T01:intron
GAGAAGTAGATCATTAGCTC+TGG 0.509100 3:-58988122 MsG0380014735.01.T01:CDS
AATCCAAGTTTGGCAGCTAC+GGG 0.510619 3:+58988386 None:intergenic
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3:+58990184 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3:+58990109 None:intergenic
GGAATATGGGCGGACACAGT+GGG 0.515501 3:-58988467 MsG0380014735.01.T01:CDS
ATGTACCTTGGATCGGTCAC+TGG 0.517053 3:-58988088 MsG0380014735.01.T01:CDS
TTTGTCGAAACCACCAGTCT+GGG 0.517272 3:-58987729 MsG0380014735.01.T01:CDS
TCCTAATTCATCAGTATGGA+TGG 0.517871 3:-58988048 MsG0380014735.01.T01:CDS
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3:-58988353 MsG0380014735.01.T01:CDS
GTTCATAAGAAAGTAGTAAG+TGG 0.520316 3:-58989998 MsG0380014735.01.T01:CDS
AAGGAACAAGCTCTTCTCCT+TGG 0.521751 3:-58989949 MsG0380014735.01.T01:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3:+58988166 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3:+58988362 None:intergenic
GCAGATTGCTGGTGGAATAT+GGG 0.526541 3:-58988480 MsG0380014735.01.T01:intron
CACCAATTCCCATGAATGCA+CGG 0.527914 3:+58988345 None:intergenic
GGAGAGGAAGAGGGAAGGTG+TGG 0.529959 3:-58990081 MsG0380014735.01.T01:CDS
TTGATGGTTTGAATATAGTC+CGG 0.531124 3:+58986152 None:intergenic
TTGCAGATAATGCAAACAGT+TGG 0.531384 3:-58986809 MsG0380014735.01.T01:intron
TGAATGGTTGATGAGAGTTC+TGG 0.533134 3:+58990138 None:intergenic
GTATACAGTGGCATGTACCT+TGG 0.538242 3:-58988100 MsG0380014735.01.T01:CDS
GAGAGGAAGAGGGAAGGTGT+GGG 0.541836 3:-58990080 MsG0380014735.01.T01:CDS
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3:-58990029 MsG0380014735.01.T01:CDS
CAAATCATTACAGATATCAC+TGG 0.551711 3:+58988280 None:intergenic
GAACAAGCTCTTCTCCTTGG+TGG 0.552276 3:-58989946 MsG0380014735.01.T01:CDS
AACAAGCTCTTCTCCTTGGT+GGG 0.552346 3:-58989945 MsG0380014735.01.T01:CDS
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3:+58987684 None:intergenic
AACCCGTGAAGGAAATACCT+TGG 0.554814 3:-58987760 MsG0380014735.01.T01:CDS
CAGTTGTACTCTGCTGACAT+TGG 0.556876 3:+58988656 None:intergenic
CCACATTGATTCTCCTGTGG+TGG 0.558004 3:-58986750 MsG0380014735.01.T01:CDS
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3:+58990103 None:intergenic
GGGAGTTAGGATTGTGGCAA+CGG 0.560055 3:+58988406 None:intergenic
ATCTGTTACAAGGGTTCGCA+AGG 0.562047 3:-58986917 MsG0380014735.01.T01:intron
AAAGTAGTAAGTGGTTTGGA+TGG 0.562988 3:-58989989 MsG0380014735.01.T01:CDS
TTGGGGATACCTCCTCACTC+AGG 0.564095 3:-58988594 MsG0380014735.01.T01:intron
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3:-58990054 MsG0380014735.01.T01:CDS
GACACTATCAGGGCCCAGAC+TGG 0.567663 3:+58987716 None:intergenic
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3:+58990115 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.569335 3:-58986926 MsG0380014735.01.T01:CDS
GATCTACTTCTCTCTGCCAC+AGG 0.573723 3:+58988133 None:intergenic
TGTACTAAACCTACAGTGGT+GGG 0.573906 3:+58988629 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3:+58988346 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3:-58990047 MsG0380014735.01.T01:CDS
CTAATCCAATCCTTCTTCCA+AGG 0.576037 3:+58985343 None:intergenic
TTCGACAAAATTAATCCCCA+AGG 0.576040 3:+58987743 None:intergenic
TCCCCAGTTGTGGCAAAAGT+GGG 0.577515 3:+58987694 None:intergenic
AACTGTTCCTAGAGAACCAA+AGG 0.579562 3:+58988009 None:intergenic
TTTGGATGGTGATGATGTTG+AGG 0.582526 3:-58989975 MsG0380014735.01.T01:CDS
AGAACTACAAGAGAAGAAAA+CGG 0.585903 3:-58985472 MsG0380014735.01.T01:three_prime_UTR
CTGTACTAAACCTACAGTGG+TGG 0.586896 3:+58988628 None:intergenic
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3:-58990055 MsG0380014735.01.T01:CDS
GCAAAAGTGGGACACTATCA+GGG 0.591083 3:+58987706 None:intergenic
ACTGACGCATTCTCTCAGTC+CGG 0.593701 3:-58986171 MsG0380014735.01.T01:CDS
TGTGTCACCGGAGAGGAAGA+GGG 0.604856 3:-58990090 MsG0380014735.01.T01:CDS
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3:-58988488 MsG0380014735.01.T01:intron
CACATTTCAGGATCATCAAG+TGG 0.607840 3:+58987827 None:intergenic
CCAATCCAGTGACCGATCCA+AGG 0.609770 3:+58988083 None:intergenic
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3:+58990122 None:intergenic
CAGTGGCATGTACCTTGGAT+CGG 0.616265 3:-58988095 MsG0380014735.01.T01:CDS
CCCTTGTAACAGATACACCT+CGG 0.616464 3:+58986926 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3:-58988638 MsG0380014735.01.T01:CDS
GTTGAGTTAAGAAGAAAGCA+GGG 0.621263 3:+58986777 None:intergenic
CCTTGTAACAGATACACCTC+GGG 0.624936 3:+58986927 None:intergenic
ACTATCAGGGCCCAGACTGG+TGG 0.627006 3:+58987719 None:intergenic
TCTGTCAAAATGGGTTCCTG+TGG 0.627501 3:-58988149 MsG0380014735.01.T01:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3:+58988025 None:intergenic
ATTTGGTTGGAACCGTGGTG+TGG 0.629179 3:-58985605 MsG0380014735.01.T01:CDS
CCATACTGATGAATTAGGAA+AGG 0.632657 3:+58988052 None:intergenic
AATACTGCTGGAGTACTGGC+TGG 0.633799 3:-58985924 MsG0380014735.01.T01:CDS
GTTGTATTTGGTTGGAACCG+TGG 0.635723 3:-58985610 MsG0380014735.01.T01:CDS
GAAATTGCCATCGTAAGCCA+CGG 0.647992 3:+58986988 None:intergenic
TGCATTCATGGGAATTGGTG+AGG 0.647999 3:-58988342 MsG0380014735.01.T01:CDS
ACAGGTTACATTCTACAGCA+TGG 0.648904 3:-58985882 MsG0380014735.01.T01:intron
ATACACAACACAGCCACCAC+AGG 0.650207 3:+58986737 None:intergenic
GTACTAAACCTACAGTGGTG+GGG 0.651673 3:+58988630 None:intergenic
ATATGGGCGGACACAGTGGG+AGG 0.653614 3:-58988464 MsG0380014735.01.T01:CDS
CACCTGCTGTGTCACCGGAG+AGG 0.665468 3:-58990097 MsG0380014735.01.T01:CDS
GAGCCACATTGATTCTCCTG+TGG 0.666663 3:-58986753 MsG0380014735.01.T01:CDS
AGACTGTACTAAACCTACAG+TGG 0.666932 3:+58988625 None:intergenic
AGCTACGGGAGTTAGGATTG+TGG 0.669995 3:+58988400 None:intergenic
CACTTGATGATCCTGAAATG+TGG 0.670661 3:-58987826 MsG0380014735.01.T01:CDS
TCACCGGAGAGGAAGAGGGA+AGG 0.672873 3:-58990086 MsG0380014735.01.T01:CDS
TGAGAAAAGGTTCCACACCA+CGG 0.680673 3:+58985593 None:intergenic
TGAAACCACATACCTGAGTG+AGG 0.683840 3:+58988582 None:intergenic
AGAGTTCTGGTACGTGACAG+TGG 0.687788 3:+58990151 None:intergenic
GCAGACACTCTTGTAACCCG+AGG 0.688978 3:-58986943 MsG0380014735.01.T01:CDS
TCATTAGCTCTGGTATACAG+TGG 0.696345 3:-58988112 MsG0380014735.01.T01:CDS
AACCACATACCTGAGTGAGG+AGG 0.707329 3:+58988585 None:intergenic
AATCCGCTTACAGAGTATCG+AGG 0.712023 3:+58986120 None:intergenic
GATTGCTGGTGGAATATGGG+CGG 0.729689 3:-58988477 MsG0380014735.01.T01:CDS
CCACCACAGGAGAATCAATG+TGG 0.729771 3:+58986750 None:intergenic
CCCGTGAAGGAAATACCTTG+GGG 0.755241 3:-58987758 MsG0380014735.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACAAAAAAGT+TGG - Chr3:58985632-58985651 MsG0380014735.01.T01:CDS 10.0%
!!! ATTTTCTTTTTATTTTTCTT+AGG - Chr3:58989447-58989466 MsG0380014735.01.T01:intron 10.0%
!!! GAATCTATTTTTTTTTTTTT+TGG - Chr3:58985594-58985613 MsG0380014735.01.T01:CDS 10.0%
!!! TTTTCTTTTTATTTTTCTTA+GGG - Chr3:58989448-58989467 MsG0380014735.01.T01:intron 10.0%
!!! TATTTTCAAATATATATCAC+AGG - Chr3:58988359-58988378 MsG0380014735.01.T01:CDS 15.0%
!!! TTTCTTTTTATTTTTCTTAG+GGG - Chr3:58989449-58989468 MsG0380014735.01.T01:intron 15.0%
!! AAAACAGTTTATAGCTTATA+CGG - Chr3:58986155-58986174 MsG0380014735.01.T01:CDS 20.0%
!! AAGTGAAATGTAATTGATTA+AGG - Chr3:58986030-58986049 MsG0380014735.01.T01:intron 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG - Chr3:58986236-58986255 MsG0380014735.01.T01:intron 20.0%
!! AATGATTTGATTCATATAGT+TGG - Chr3:58987148-58987167 MsG0380014735.01.T01:intron 20.0%
!! AGTGAAATGTAATTGATTAA+GGG - Chr3:58986031-58986050 MsG0380014735.01.T01:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG - Chr3:58986237-58986256 MsG0380014735.01.T01:intron 20.0%
!! ATTACAAAAAAGTTGGATAT+TGG - Chr3:58985639-58985658 MsG0380014735.01.T01:CDS 20.0%
!! CAATAGATTATGTTATTATC+AGG + Chr3:58988174-58988193 None:intergenic 20.0%
!! GAATAATATTCTGTCAAAAT+GGG - Chr3:58987256-58987275 MsG0380014735.01.T01:intron 20.0%
!! GTTAAAAACTAATCTAAACT+AGG + Chr3:58986270-58986289 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG - Chr3:58987255-58987274 MsG0380014735.01.T01:intron 20.0%
!! TTTCAAATTCTTACTGTATA+GGG - Chr3:58989219-58989238 MsG0380014735.01.T01:intron 20.0%
!! TTTCATTCTTATTAACTAAG+AGG - Chr3:58986319-58986338 MsG0380014735.01.T01:intron 20.0%
!!! AAAGAAATAGTTTTAAGTTG+TGG + Chr3:58987959-58987978 None:intergenic 20.0%
!!! AAGAAAAAAGTACTTTTTGT+TGG - Chr3:58987931-58987950 MsG0380014735.01.T01:intron 20.0%
!!! ATCATAATTTTAGTTCATAC+CGG - Chr3:58989022-58989041 MsG0380014735.01.T01:intron 20.0%
!!! TAAACTGTTATTTTCTACTA+AGG + Chr3:58988814-58988833 None:intergenic 20.0%
!!! TTAGATTAGTTTTTAACCTA+TGG - Chr3:58986273-58986292 MsG0380014735.01.T01:intron 20.0%
!!! TTTCTATGAAATCTTTTCAT+TGG - Chr3:58989705-58989724 MsG0380014735.01.T01:intron 20.0%
!!! TTTTGACAGAATATTATTCA+TGG + Chr3:58987255-58987274 None:intergenic 20.0%
! AAACAAGAAACAAAAGTTGA+AGG + Chr3:58988529-58988548 None:intergenic 25.0%
! AACAAGAAACAAAAGTTGAA+GGG + Chr3:58988528-58988547 None:intergenic 25.0%
! AACTTAATGAGTTAGTTAGT+TGG + Chr3:58985908-58985927 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG + Chr3:58988115-58988134 None:intergenic 25.0%
! ACAAAATTTACCAATTTGTC+CGG + Chr3:58990004-58990023 None:intergenic 25.0%
! AGAAGATAATCAACCTAAAA+GGG + Chr3:58988114-58988133 None:intergenic 25.0%
! AGGTAAAAATTAAATGTGCA+TGG + Chr3:58985960-58985979 None:intergenic 25.0%
! ATTCACAATCCTTCATATTA+CGG - Chr3:58986434-58986453 MsG0380014735.01.T01:intron 25.0%
! ATTTATGGCTATGTAATCAT+AGG - Chr3:58986581-58986600 MsG0380014735.01.T01:intron 25.0%
! CACTTAAAATTAAGTAGTGT+TGG - Chr3:58989155-58989174 MsG0380014735.01.T01:intron 25.0%
! CATATAAGATGTTGAAAAAG+TGG + Chr3:58985575-58985594 None:intergenic 25.0%
! CATGCTAAATTGTTATCTTA+GGG - Chr3:58989401-58989420 MsG0380014735.01.T01:intron 25.0%
! CTTACTTGATTATAGTATGT+TGG + Chr3:58987770-58987789 None:intergenic 25.0%
! GAACAAGAAGATATACAATA+AGG + Chr3:58990108-58990127 None:intergenic 25.0%
! GAATGAATCAAGTAGAAATA+TGG + Chr3:58988292-58988311 None:intergenic 25.0%
! GTAGATACACTTACTAATTT+AGG - Chr3:58985723-58985742 MsG0380014735.01.T01:intron 25.0%
! GTTATTACTCGTATTGTAAT+TGG - Chr3:58986001-58986020 MsG0380014735.01.T01:intron 25.0%
! GTTTCAAATTCTTACTGTAT+AGG - Chr3:58989218-58989237 MsG0380014735.01.T01:intron 25.0%
! TGTGTACATATATTTCGTAA+AGG + Chr3:58987484-58987503 None:intergenic 25.0%
! TGTTTATGAGTTTCATTCTA+TGG - Chr3:58987885-58987904 MsG0380014735.01.T01:intron 25.0%
! TTATATGAAGAACTCCTTAT+CGG + Chr3:58988753-58988772 None:intergenic 25.0%
! TTTATGGCTATGTAATCATA+GGG - Chr3:58986582-58986601 MsG0380014735.01.T01:intron 25.0%
! TTTATTCTTACTGATGTCAA+TGG - Chr3:58989575-58989594 MsG0380014735.01.T01:intron 25.0%
!! AATAACGATTTGTTCAAGTT+CGG - Chr3:58988920-58988939 MsG0380014735.01.T01:intron 25.0%
!! ATACAGTAAGAATTTGAAAC+TGG + Chr3:58989218-58989237 None:intergenic 25.0%
!! CATAAAAAACCTTGATGTTT+TGG - Chr3:58986476-58986495 MsG0380014735.01.T01:intron 25.0%
!! CTTGTTACTTAGAAGATTTA+TGG - Chr3:58986566-58986585 MsG0380014735.01.T01:intron 25.0%
!! TGCTTTTCTTCTATGTAATA+TGG - Chr3:58985535-58985554 MsG0380014735.01.T01:three_prime_UTR 25.0%
!!! AGAAACTGTTTTTGAAATAC+TGG - Chr3:58986514-58986533 MsG0380014735.01.T01:intron 25.0%
!!! AGTACTTTTTTCTTATGCAT+AGG + Chr3:58987925-58987944 None:intergenic 25.0%
!!! ATGCACATTTAATTTTTACC+TGG - Chr3:58985959-58985978 MsG0380014735.01.T01:intron 25.0%
AAGTTCAATCTTACAGAATC+TGG - Chr3:58988387-58988406 MsG0380014735.01.T01:CDS 30.0%
ACTAATCTAAACTAGGCTTA+AGG + Chr3:58986263-58986282 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+CGG - Chr3:58986067-58986086 MsG0380014735.01.T01:intron 30.0%
AGAACTACAAGAGAAGAAAA+CGG - Chr3:58989942-58989961 MsG0380014735.01.T01:CDS 30.0%
AGCAAATACTTTAAGCTTCA+AGG + Chr3:58989609-58989628 None:intergenic 30.0%
ATAACAATAACCCATCTCTT+AGG + Chr3:58985503-58985522 None:intergenic 30.0%
ATGAATTAGGAAAGGTGAAA+AGG + Chr3:58987357-58987376 None:intergenic 30.0%
ATGAATTTCCCACCAAATAT+GGG + Chr3:58990136-58990155 None:intergenic 30.0%
ATTATACAAGTGACAGACTT+TGG + Chr3:58988998-58989017 None:intergenic 30.0%
CAAATCATTACAGATATCAC+TGG + Chr3:58987137-58987156 None:intergenic 30.0%
CAACAATAGAATCAGAAGAA+TGG + Chr3:58988140-58988159 None:intergenic 30.0%
CCATGCTAAATTGTTATCTT+AGG - Chr3:58989400-58989419 MsG0380014735.01.T01:intron 30.0%
CCTAAGATAACAATTTAGCA+TGG + Chr3:58989403-58989422 None:intergenic 30.0%
CTCTAATTAGAAACTTCCAT+AGG + Chr3:58986292-58986311 None:intergenic 30.0%
CTGAAAATAAGCATAGAGAA+CGG + Chr3:58989750-58989769 None:intergenic 30.0%
GAACTTTCATTCTTCTTACA+TGG - Chr3:58987741-58987760 MsG0380014735.01.T01:CDS 30.0%
GAGATAATGTTGTCAAATAG+TGG + Chr3:58988976-58988995 None:intergenic 30.0%
GCAAATACTTTAAGCTTCAA+GGG + Chr3:58989608-58989627 None:intergenic 30.0%
GGCTTGAAGTTCAAAATTAA+GGG + Chr3:58986884-58986903 None:intergenic 30.0%
GTTCATAAGAAAGTAGTAAG+TGG - Chr3:58985416-58985435 MsG0380014735.01.T01:three_prime_UTR 30.0%
TAAGAAAGTAGTAAGTGGTT+TGG - Chr3:58985421-58985440 MsG0380014735.01.T01:three_prime_UTR 30.0%
TATGAATTTCCCACCAAATA+TGG + Chr3:58990137-58990156 None:intergenic 30.0%
TGGCTTGAAGTTCAAAATTA+AGG + Chr3:58986885-58986904 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + Chr3:58990207-58990226 None:intergenic 30.0%
! AACTGACTTTATGTTAGGAA+AGG + Chr3:58988777-58988796 None:intergenic 30.0%
! AACTTCTTTTGGATCTTACT+AGG - Chr3:58987214-58987233 MsG0380014735.01.T01:intron 30.0%
! AAGAAGTTGATTGCTACAAA+TGG - Chr3:58987620-58987639 MsG0380014735.01.T01:intron 30.0%
! ACAAGAACTGACTTTATGTT+AGG + Chr3:58988782-58988801 None:intergenic 30.0%
! ACTTCTTTTGGATCTTACTA+GGG - Chr3:58987215-58987234 MsG0380014735.01.T01:intron 30.0%
! AGTACAGTCTTCTTTCTTTT+GGG - Chr3:58986802-58986821 MsG0380014735.01.T01:CDS 30.0%
! ATGGCAATTTCTGCAAATTT+TGG - Chr3:58988438-58988457 MsG0380014735.01.T01:CDS 30.0%
! ATTGCAGAATATGAAGTATC+CGG + Chr3:58989044-58989063 None:intergenic 30.0%
! ATTGCTCTTTTCACATTTAC+AGG - Chr3:58986712-58986731 MsG0380014735.01.T01:intron 30.0%
! CAGTTATTTCCAAAACATCA+AGG + Chr3:58986488-58986507 None:intergenic 30.0%
! CTTGTTCATTTTCCCATATT+TGG - Chr3:58990121-58990140 MsG0380014735.01.T01:CDS 30.0%
! GGACAAATTGGTAAATTTTG+TGG - Chr3:58990003-58990022 MsG0380014735.01.T01:CDS 30.0%
! GTTTTCAGCTTATAGGATAA+CGG - Chr3:58986129-58986148 MsG0380014735.01.T01:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG - Chr3:58987430-58987449 MsG0380014735.01.T01:intron 30.0%
! TAAGAATTTGAAACTGGTGA+GGG + Chr3:58989212-58989231 None:intergenic 30.0%
! TAATTTTGAACTTCAAGCCA+TGG - Chr3:58986885-58986904 MsG0380014735.01.T01:intron 30.0%
! TAGTACAGTCTTCTTTCTTT+TGG - Chr3:58986801-58986820 MsG0380014735.01.T01:CDS 30.0%
! TCTTCATCAGAATTTTATGC+CGG - Chr3:58989982-58990001 MsG0380014735.01.T01:CDS 30.0%
! TGTTTGCTAAGTATGTTGTT+TGG - Chr3:58987806-58987825 MsG0380014735.01.T01:CDS 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + Chr3:58989848-58989867 None:intergenic 30.0%
! TTCATTTTCCCATATTTGGT+GGG - Chr3:58990125-58990144 MsG0380014735.01.T01:CDS 30.0%
! TTGATGGTTTGAATATAGTC+CGG + Chr3:58989265-58989284 None:intergenic 30.0%
!! ATAAGCTGTTTTCAGCTTAT+AGG - Chr3:58986122-58986141 MsG0380014735.01.T01:intron 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - Chr3:58989782-58989801 MsG0380014735.01.T01:intron 30.0%
!! ATTTAATTTTTACCTGGTCC+AGG - Chr3:58985965-58985984 MsG0380014735.01.T01:intron 30.0%
!!! CCAGTTTTCTGTGTTTTTTT+GGG - Chr3:58987544-58987563 MsG0380014735.01.T01:intron 30.0%
!!! GAACAGTTTGGTTTTGTATA+TGG - Chr3:58987420-58987439 MsG0380014735.01.T01:intron 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - Chr3:58988713-58988732 MsG0380014735.01.T01:intron 30.0%
!!! TCAAGTAAGTCTTTTTTCCT+TGG - Chr3:58987781-58987800 MsG0380014735.01.T01:CDS 30.0%
!!! TGATGTTTTGGAAATAACTG+TGG - Chr3:58986488-58986507 MsG0380014735.01.T01:intron 30.0%
AAAAGTTCAGCTAGTGAACA+AGG - Chr3:58986393-58986412 MsG0380014735.01.T01:intron 35.0%
AAATAAGCATAGAGAACGGA+TGG + Chr3:58989746-58989765 None:intergenic 35.0%
AAGTTAGTTGCTAATGTACC+AGG + Chr3:58985854-58985873 None:intergenic 35.0%
ACAGATATCACTGGCAATAT+CGG + Chr3:58987128-58987147 None:intergenic 35.0%
ACCACTGCAATACTAATCTA+AGG + Chr3:58986663-58986682 None:intergenic 35.0%
ACCTTAGATTAGTATTGCAG+TGG - Chr3:58986659-58986678 MsG0380014735.01.T01:intron 35.0%
ACGTATTTCTCATTCCGATA+AGG - Chr3:58988736-58988755 MsG0380014735.01.T01:intron 35.0%
AGTACCATGACTGTTTATTC+CGG + Chr3:58986089-58986108 None:intergenic 35.0%
AGTTGAGTTAAGAAGAAAGC+AGG + Chr3:58988641-58988660 None:intergenic 35.0%
ATAACATAAACAGCTTCTCC+TGG + Chr3:58985986-58986005 None:intergenic 35.0%
CAATCTGCAACAAGTATCTA+CGG + Chr3:58986922-58986941 None:intergenic 35.0%
CATACTTAGCAAACAATCCA+AGG + Chr3:58987801-58987820 None:intergenic 35.0%
CCATACTGATGAATTAGGAA+AGG + Chr3:58987365-58987384 None:intergenic 35.0%
CCCAAAAAAACACAGAAAAC+TGG + Chr3:58987547-58987566 None:intergenic 35.0%
CCTTTCCTAATTCATCAGTA+TGG - Chr3:58987362-58987381 MsG0380014735.01.T01:intron 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + Chr3:58985242-58985261 None:intergenic 35.0%
GACAGAATATTATTCATGGC+CGG + Chr3:58987251-58987270 None:intergenic 35.0%
GCAACTTTACCGTAATATGA+AGG + Chr3:58986446-58986465 None:intergenic 35.0%
GTTGAGTTAAGAAGAAAGCA+GGG + Chr3:58988640-58988659 None:intergenic 35.0%
TAGAAAAGGCAATCCAAGTT+TGG + Chr3:58987041-58987060 None:intergenic 35.0%
TCCAATACTCCAATGAATTG+CGG - Chr3:58986605-58986624 MsG0380014735.01.T01:intron 35.0%
TCCTAATTCATCAGTATGGA+TGG - Chr3:58987366-58987385 MsG0380014735.01.T01:intron 35.0%
TTCGACAAAATTAATCCCCA+AGG + Chr3:58987674-58987693 None:intergenic 35.0%
TTGCAGATAATGCAAACAGT+TGG - Chr3:58988605-58988624 MsG0380014735.01.T01:CDS 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG - Chr3:58988098-58988117 MsG0380014735.01.T01:CDS 35.0%
! AAAAGGGAGACTAAGGTTTT+AGG + Chr3:58988098-58988117 None:intergenic 35.0%
! AAAGTAGTAAGTGGTTTGGA+TGG - Chr3:58985425-58985444 MsG0380014735.01.T01:three_prime_UTR 35.0%
! ATGTTAAGTCTGAGAAGCAT+GGG - Chr3:58985360-58985379 MsG0380014735.01.T01:three_prime_UTR 35.0%
! CAAAAGAAGTTAGCTTCACA+TGG + Chr3:58987205-58987224 None:intergenic 35.0%
! CATGTGAAGCTAACTTCTTT+TGG - Chr3:58987203-58987222 MsG0380014735.01.T01:intron 35.0%
! GAATTTTATGCCGGACAAAT+TGG - Chr3:58989991-58990010 MsG0380014735.01.T01:CDS 35.0%
! GCAATCAACTTCTTTTCTTC+TGG + Chr3:58987614-58987633 None:intergenic 35.0%
! GCAATTTCTGCAAATTTTGG+TGG - Chr3:58988441-58988460 MsG0380014735.01.T01:CDS 35.0%
! GCGTGACAAAGTATCAATTA+TGG + Chr3:58989882-58989901 None:intergenic 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG - Chr3:58985490-58985509 MsG0380014735.01.T01:three_prime_UTR 35.0%
! GTAAGAATTTGAAACTGGTG+AGG + Chr3:58989213-58989232 None:intergenic 35.0%
! GTACAGTCTTCTTTCTTTTG+GGG - Chr3:58986803-58986822 MsG0380014735.01.T01:CDS 35.0%
! GTTCATTTTCCCATATTTGG+TGG - Chr3:58990124-58990143 MsG0380014735.01.T01:CDS 35.0%
! TGCTACAAATGGTTTTTCCA+AGG - Chr3:58987631-58987650 MsG0380014735.01.T01:intron 35.0%
! TTTTAGCATTTGGCGTCATT+TGG - Chr3:58986981-58987000 MsG0380014735.01.T01:CDS 35.0%
! TTTTAGGCGAAAGAACAAAG+AGG + Chr3:58988082-58988101 None:intergenic 35.0%
! TTTTCTTGACAACAGTGTCT+TGG - Chr3:58989083-58989102 MsG0380014735.01.T01:intron 35.0%
!! ATGCTTATTTTCAGGCTCAT+GGG - Chr3:58989756-58989775 MsG0380014735.01.T01:intron 35.0%
!! CGTTCTCTATGCTTATTTTC+AGG - Chr3:58989748-58989767 MsG0380014735.01.T01:intron 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - Chr3:58989781-58989800 MsG0380014735.01.T01:intron 35.0%
!! GCCAGTTTTCTGTGTTTTTT+TGG - Chr3:58987543-58987562 MsG0380014735.01.T01:intron 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG - Chr3:58986971-58986990 MsG0380014735.01.T01:CDS 35.0%
!! TATGCTTATTTTCAGGCTCA+TGG - Chr3:58989755-58989774 MsG0380014735.01.T01:intron 35.0%
!! TTGGTGATGATACGATATGA+TGG - Chr3:58987167-58987186 MsG0380014735.01.T01:intron 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG - Chr3:58988445-58988464 MsG0380014735.01.T01:CDS 35.0%
!!! ATGCAAACAGTTGGTTTTCT+TGG - Chr3:58988614-58988633 MsG0380014735.01.T01:CDS 35.0%
!!! CACATATCAGTTTTAGAGTC+CGG + Chr3:58985792-58985811 None:intergenic 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG - Chr3:58987398-58987417 MsG0380014735.01.T01:intron 35.0%
AACTGTTCCTAGAGAACCAA+AGG + Chr3:58987408-58987427 None:intergenic 40.0%
ACAGGTTACATTCTACAGCA+TGG - Chr3:58989532-58989551 MsG0380014735.01.T01:intron 40.0%
ACCGCAATTCATTGGAGTAT+TGG + Chr3:58986609-58986628 None:intergenic 40.0%
AGACTGTACTAAACCTACAG+TGG + Chr3:58986792-58986811 None:intergenic 40.0%
ATCAAATACTGCTGGAGTAC+TGG - Chr3:58989486-58989505 MsG0380014735.01.T01:intron 40.0%
ATCGAGGAGCTATATCTTGA+TGG + Chr3:58989281-58989300 None:intergenic 40.0%
CACATTTCAGGATCATCAAG+TGG + Chr3:58987590-58987609 None:intergenic 40.0%
CAGATATCACTGGCAATATC+GGG + Chr3:58987127-58987146 None:intergenic 40.0%
CCAAAGGAGTAAAACACTGA+TGG + Chr3:58987392-58987411 None:intergenic 40.0%
CTAATCCAATCCTTCTTCCA+AGG + Chr3:58990074-58990093 None:intergenic 40.0%
GAAGAAGAAGAAGAAGGTGA+TGG + Chr3:58985236-58985255 None:intergenic 40.0%
GAGAAGTAGATCATTAGCTC+TGG - Chr3:58987292-58987311 MsG0380014735.01.T01:intron 40.0%
GATGTTAAGTCTGAGAAGCA+TGG - Chr3:58985359-58985378 MsG0380014735.01.T01:three_prime_UTR 40.0%
GCCATCCATACTGATGAATT+AGG + Chr3:58987370-58987389 None:intergenic 40.0%
TAGCTAACACTTCTGATGGA+AGG + Chr3:58985831-58985850 None:intergenic 40.0%
TCAACCTAAAAGGGAGACTA+AGG + Chr3:58988105-58988124 None:intergenic 40.0%
TCATACTTACTTGATGCCTC+TGG + Chr3:58985386-58985405 None:intergenic 40.0%
TCCATGCTACTGAAAATTCC+AGG + Chr3:58989327-58989346 None:intergenic 40.0%
TCTACCGGAATAAACAGTCA+TGG - Chr3:58986082-58986101 MsG0380014735.01.T01:intron 40.0%
TCTTTCTCACCGCAATTCAT+TGG + Chr3:58986617-58986636 None:intergenic 40.0%
TGTACTAAACCTACAGTGGT+GGG + Chr3:58986788-58986807 None:intergenic 40.0%
TTAGGAAAAACTTCCCACCA+AGG + Chr3:58985485-58985504 None:intergenic 40.0%
! ACCTGGAATTTTCAGTAGCA+TGG - Chr3:58989323-58989342 MsG0380014735.01.T01:intron 40.0%
! AGATACTTGTTGCAGATTGC+TGG - Chr3:58986923-58986942 MsG0380014735.01.T01:CDS 40.0%
! CACTTGATGATCCTGAAATG+TGG - Chr3:58987588-58987607 MsG0380014735.01.T01:intron 40.0%
! CCATCAGTGTTTTACTCCTT+TGG - Chr3:58987389-58987408 MsG0380014735.01.T01:intron 40.0%
! CTCATGGGATGATGTTTTCA+AGG - Chr3:58989771-58989790 MsG0380014735.01.T01:intron 40.0%
! GACTATTTTGCGTTTTACCG+TGG - Chr3:58988409-58988428 MsG0380014735.01.T01:CDS 40.0%
! GCTAAGTATGTTGTTTGGTG+TGG - Chr3:58987811-58987830 MsG0380014735.01.T01:CDS 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG - Chr3:58985489-58985508 MsG0380014735.01.T01:three_prime_UTR 40.0%
! GGTTTCAGTTGGGTTGTATT+TGG - Chr3:58989792-58989811 MsG0380014735.01.T01:intron 40.0%
! TCAGTTGGGTTGTATTTGGT+TGG - Chr3:58989796-58989815 MsG0380014735.01.T01:intron 40.0%
! TTGGTTCTCTAGGAACAGTT+TGG - Chr3:58987408-58987427 MsG0380014735.01.T01:intron 40.0%
! TTTGGATGGTGATGATGTTG+AGG - Chr3:58985439-58985458 MsG0380014735.01.T01:three_prime_UTR 40.0%
! TTTTCTTAGGGGATACTGCT+CGG - Chr3:58989460-58989479 MsG0380014735.01.T01:intron 40.0%
! TTTTCTTCTGGCCACATTTC+AGG + Chr3:58987602-58987621 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG - Chr3:58985385-58985404 MsG0380014735.01.T01:three_prime_UTR 40.0%
!! GTAAGCGGATTCATTTTACC+TGG - Chr3:58989306-58989325 MsG0380014735.01.T01:intron 40.0%
!! TCATTAGCTCTGGTATACAG+TGG - Chr3:58987302-58987321 MsG0380014735.01.T01:intron 40.0%
!! TCTTTTCACCGGTTGAGAAA+AGG + Chr3:58989837-58989856 None:intergenic 40.0%
!! TGAATGGTTGATGAGAGTTC+TGG + Chr3:58985279-58985298 None:intergenic 40.0%
!!! TGTGTTTTTTTGGGACCTGT+AGG - Chr3:58987553-58987572 MsG0380014735.01.T01:intron 40.0%
AACAAGCTCTTCTCCTTGGT+GGG - Chr3:58985469-58985488 MsG0380014735.01.T01:three_prime_UTR 45.0%
AACCCGTGAAGGAAATACCT+TGG - Chr3:58987654-58987673 MsG0380014735.01.T01:CDS 45.0%
AAGGAACAAGCTCTTCTCCT+TGG - Chr3:58985465-58985484 MsG0380014735.01.T01:three_prime_UTR 45.0%
AATCCAAGTTTGGCAGCTAC+GGG + Chr3:58987031-58987050 None:intergenic 45.0%
ACCAATTCCCATGAATGCAC+GGG + Chr3:58987071-58987090 None:intergenic 45.0%
ACCCGTGAAGGAAATACCTT+GGG - Chr3:58987655-58987674 MsG0380014735.01.T01:CDS 45.0%
ACTAGGCTTAAGGCCCTATT+TGG + Chr3:58986253-58986272 None:intergenic 45.0%
ATCTGTTACAAGGGTTCGCA+AGG - Chr3:58988497-58988516 MsG0380014735.01.T01:intron 45.0%
ATGGAAACGGAGAAGGTGAA+TGG + Chr3:58985295-58985314 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG - Chr3:58987060-58987079 MsG0380014735.01.T01:intron 45.0%
CAATCCAAGTTTGGCAGCTA+CGG + Chr3:58987032-58987051 None:intergenic 45.0%
CAATGTCAGCAGAGTACAAC+TGG - Chr3:58986759-58986778 MsG0380014735.01.T01:CDS 45.0%
CACCAATTCCCATGAATGCA+CGG + Chr3:58987072-58987091 None:intergenic 45.0%
CAGGTAGCTAACACTTCTGA+TGG + Chr3:58985835-58985854 None:intergenic 45.0%
CAGTTGTACTCTGCTGACAT+TGG + Chr3:58986761-58986780 None:intergenic 45.0%
CCAACAACGACTCGTGTAAT+CGG + Chr3:58990051-58990070 None:intergenic 45.0%
CCCTTGTAACAGATACACCT+CGG + Chr3:58988491-58988510 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG - Chr3:58988488-58988507 MsG0380014735.01.T01:intron 45.0%
CCTTGTAACAGATACACCTC+GGG + Chr3:58988490-58988509 None:intergenic 45.0%
CTCGGTCTATCAAATACTGC+TGG - Chr3:58989478-58989497 MsG0380014735.01.T01:intron 45.0%
CTGTACTAAACCTACAGTGG+TGG + Chr3:58986789-58986808 None:intergenic 45.0%
GAAATTGCCATCGTAAGCCA+CGG + Chr3:58988429-58988448 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG + Chr3:58987733-58987752 None:intergenic 45.0%
GCAAAAGTGGGACACTATCA+GGG + Chr3:58987711-58987730 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG + Chr3:58987055-58987074 None:intergenic 45.0%
GCAGATTGCTGGTGGAATAT+GGG - Chr3:58986934-58986953 MsG0380014735.01.T01:CDS 45.0%
GTACTAAACCTACAGTGGTG+GGG + Chr3:58986787-58986806 None:intergenic 45.0%
GTATACAGTGGCATGTACCT+TGG - Chr3:58987314-58987333 MsG0380014735.01.T01:intron 45.0%
GTTGTATTTGGTTGGAACCG+TGG - Chr3:58989804-58989823 MsG0380014735.01.T01:intron 45.0%
TAGCATTTGGCGTCATTTGG+TGG - Chr3:58986984-58987003 MsG0380014735.01.T01:CDS 45.0%
TATTTCCTTCACGGGTTCCT+TGG + Chr3:58987651-58987670 None:intergenic 45.0%
TGAAACCACATACCTGAGTG+AGG + Chr3:58986835-58986854 None:intergenic 45.0%
TGAGAAAAGGTTCCACACCA+CGG + Chr3:58989824-58989843 None:intergenic 45.0%
TGCAGATTGCTGGTGGAATA+TGG - Chr3:58986933-58986952 MsG0380014735.01.T01:CDS 45.0%
TGCATTCATGGGAATTGGTG+AGG - Chr3:58987072-58987091 MsG0380014735.01.T01:intron 45.0%
TTAGTTGCCCGTGCATTCAT+GGG - Chr3:58987061-58987080 MsG0380014735.01.T01:intron 45.0%
TTTGTCGAAACCACCAGTCT+GGG - Chr3:58987685-58987704 MsG0380014735.01.T01:CDS 45.0%
! GAAGAAGAAGAAGGTGATGG+TGG + Chr3:58985233-58985252 None:intergenic 45.0%
! GGTGATGATGTTGAGGTAGA+AGG - Chr3:58985446-58985465 MsG0380014735.01.T01:three_prime_UTR 45.0%
! GTGTGGAACCTTTTCTCAAC+CGG - Chr3:58989826-58989845 MsG0380014735.01.T01:intron 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - Chr3:58988691-58988710 MsG0380014735.01.T01:intron 45.0%
! TACTTGTTGCAGATTGCTGG+TGG - Chr3:58986926-58986945 MsG0380014735.01.T01:CDS 45.0%
! TCCCCAAGGTATTTCCTTCA+CGG + Chr3:58987660-58987679 None:intergenic 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG - Chr3:58987265-58987284 MsG0380014735.01.T01:intron 45.0%
! TTTTGTCGAAACCACCAGTC+TGG - Chr3:58987684-58987703 MsG0380014735.01.T01:CDS 45.0%
! TTTTTCCAAGGAACCCGTGA+AGG - Chr3:58987643-58987662 MsG0380014735.01.T01:intron 45.0%
!! AATCCGCTTACAGAGTATCG+AGG + Chr3:58989297-58989316 None:intergenic 45.0%
!! CATCAGAAGTGTTAGCTACC+TGG - Chr3:58985833-58985852 MsG0380014735.01.T01:intron 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG - Chr3:58987229-58987248 MsG0380014735.01.T01:intron 45.0%
AACCACATACCTGAGTGAGG+AGG + Chr3:58986832-58986851 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+CGG - Chr3:58989243-58989262 MsG0380014735.01.T01:intron 50.0%
AGCTACGGGAGTTAGGATTG+TGG + Chr3:58987017-58987036 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG + Chr3:58985302-58985321 None:intergenic 50.0%
ATACACAACACAGCCACCAC+AGG + Chr3:58988680-58988699 None:intergenic 50.0%
ATGTACCTTGGATCGGTCAC+TGG - Chr3:58987326-58987345 MsG0380014735.01.T01:intron 50.0%
ATTTGGTTGGAACCGTGGTG+TGG - Chr3:58989809-58989828 MsG0380014735.01.T01:intron 50.0%
CACAGCAGGTGCAATGGAAA+CGG + Chr3:58985308-58985327 None:intergenic 50.0%
CAGTGGCATGTACCTTGGAT+CGG - Chr3:58987319-58987338 MsG0380014735.01.T01:intron 50.0%
CCACCACAGGAGAATCAATG+TGG + Chr3:58988667-58988686 None:intergenic 50.0%
CCCGAGGTGTATCTGTTACA+AGG - Chr3:58988487-58988506 MsG0380014735.01.T01:intron 50.0%
CCCGTGAAGGAAATACCTTG+GGG - Chr3:58987656-58987675 MsG0380014735.01.T01:CDS 50.0%
CCGATTACACGAGTCGTTGT+TGG - Chr3:58990048-58990067 MsG0380014735.01.T01:CDS 50.0%
GAACAAGCTCTTCTCCTTGG+TGG - Chr3:58985468-58985487 MsG0380014735.01.T01:three_prime_UTR 50.0%
GATCTACTTCTCTCTGCCAC+AGG + Chr3:58987284-58987303 None:intergenic 50.0%
GATTGCTGGTGGAATATGGG+CGG - Chr3:58986937-58986956 MsG0380014735.01.T01:CDS 50.0%
GCGGTGAGAAAGAGAACAGA+TGG - Chr3:58986624-58986643 MsG0380014735.01.T01:intron 50.0%
GCTCCTCGATACTCTGTAAG+CGG - Chr3:58989291-58989310 MsG0380014735.01.T01:intron 50.0%
GGCAAAAGTGGGACACTATC+AGG + Chr3:58987712-58987731 None:intergenic 50.0%
GGGAGTTAGGATTGTGGCAA+CGG + Chr3:58987011-58987030 None:intergenic 50.0%
GTTCTTGGAACAGCAGCTAC+AGG - Chr3:58989514-58989533 MsG0380014735.01.T01:intron 50.0%
TAAACAGCTTCTCCTGGACC+AGG + Chr3:58985980-58985999 None:intergenic 50.0%
TACATGTCTCAGCGTCATGC+CGG - Chr3:58985770-58985789 MsG0380014735.01.T01:intron 50.0%
TACCTCCTCACTCAGGTATG+TGG - Chr3:58986827-58986846 MsG0380014735.01.T01:intron 50.0%
TCCCCAGTTGTGGCAAAAGT+GGG + Chr3:58987723-58987742 None:intergenic 50.0%
TTCCCCAGTTGTGGCAAAAG+TGG + Chr3:58987724-58987743 None:intergenic 50.0%
! AGAGTTCTGGTACGTGACAG+TGG + Chr3:58985266-58985285 None:intergenic 50.0%
! CCCCAAGGTATTTCCTTCAC+GGG + Chr3:58987659-58987678 None:intergenic 50.0%
! CGTTTTACCGTGGCTTACGA+TGG - Chr3:58988419-58988438 MsG0380014735.01.T01:CDS 50.0%
! CTTCTGATGGAAGGTGTGTC+TGG + Chr3:58985822-58985841 None:intergenic 50.0%
!! AATACTGCTGGAGTACTGGC+TGG - Chr3:58989490-58989509 MsG0380014735.01.T01:intron 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - Chr3:58988664-58988683 MsG0380014735.01.T01:CDS 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - Chr3:58988661-58988680 MsG0380014735.01.T01:CDS 50.0%
!! GTCCCACTTTTGCCACAACT+GGG - Chr3:58987718-58987737 MsG0380014735.01.T01:CDS 50.0%
!! GTTGGCCTTGGAAGAAGGAT+TGG - Chr3:58990066-58990085 MsG0380014735.01.T01:CDS 50.0%
!! TCCCACTTTTGCCACAACTG+GGG - Chr3:58987719-58987738 MsG0380014735.01.T01:CDS 50.0%
!! TCGTTGTTGGCCTTGGAAGA+AGG - Chr3:58990061-58990080 MsG0380014735.01.T01:CDS 50.0%
!! TGTCCCACTTTTGCCACAAC+TGG - Chr3:58987717-58987736 MsG0380014735.01.T01:CDS 50.0%
AACTGGAACCCCACCACTGT+AGG - Chr3:58986776-58986795 MsG0380014735.01.T01:CDS 55.0%
ACACCTTCCCTCTTCCTCTC+CGG + Chr3:58985334-58985353 None:intergenic 55.0%
ACTCCCGTAGCTGCCAAACT+TGG - Chr3:58987025-58987044 MsG0380014735.01.T01:CDS 55.0%
CATTGCACCTGCTGTGTCAC+CGG - Chr3:58985312-58985331 MsG0380014735.01.T01:three_prime_UTR 55.0%
CCAATCCAGTGACCGATCCA+AGG + Chr3:58987334-58987353 None:intergenic 55.0%
CCTTGGATCGGTCACTGGAT+TGG - Chr3:58987331-58987350 MsG0380014735.01.T01:intron 55.0%
CTACGGATGCATCAGAGCCA+TGG + Chr3:58986905-58986924 None:intergenic 55.0%
GCAGACACTCTTGTAACCCG+AGG - Chr3:58988471-58988490 MsG0380014735.01.T01:CDS 55.0%
GCCCGTGCATTCATGGGAAT+TGG - Chr3:58987067-58987086 MsG0380014735.01.T01:intron 55.0%
GGAATATGGGCGGACACAGT+GGG - Chr3:58986947-58986966 MsG0380014735.01.T01:CDS 55.0%
GTGGCGAACTATGTGCCTAC+AGG + Chr3:58987571-58987590 None:intergenic 55.0%
GTTTGGCAGCTACGGGAGTT+AGG + Chr3:58987024-58987043 None:intergenic 55.0%
TGGAATATGGGCGGACACAG+TGG - Chr3:58986946-58986965 MsG0380014735.01.T01:CDS 55.0%
TGTGTCACCGGAGAGGAAGA+GGG - Chr3:58985324-58985343 MsG0380014735.01.T01:three_prime_UTR 55.0%
TTGGGGATACCTCCTCACTC+AGG - Chr3:58986820-58986839 MsG0380014735.01.T01:intron 55.0%
! ACACGAGTCGTTGTTGGCCT+TGG - Chr3:58990054-58990073 MsG0380014735.01.T01:CDS 55.0%
! GAGAGGAAGAGGGAAGGTGT+GGG - Chr3:58985334-58985353 MsG0380014735.01.T01:three_prime_UTR 55.0%
!! GGAGTACTGGCTGGTGTTCT+TGG - Chr3:58989499-58989518 MsG0380014735.01.T01:intron 55.0%
ACTATCAGGGCCCAGACTGG+TGG + Chr3:58987698-58987717 None:intergenic 60.0%
ATATGGGCGGACACAGTGGG+AGG - Chr3:58986950-58986969 MsG0380014735.01.T01:CDS 60.0%
CGGTGACACAGCAGGTGCAA+TGG + Chr3:58985314-58985333 None:intergenic 60.0%
CTGTGTCACCGGAGAGGAAG+AGG - Chr3:58985323-58985342 MsG0380014735.01.T01:three_prime_UTR 60.0%
GACACTATCAGGGCCCAGAC+TGG + Chr3:58987701-58987720 None:intergenic 60.0%
GGAGAGGAAGAGGGAAGGTG+TGG - Chr3:58985333-58985352 MsG0380014735.01.T01:three_prime_UTR 60.0%
TCACCGGAGAGGAAGAGGGA+AGG - Chr3:58985328-58985347 MsG0380014735.01.T01:three_prime_UTR 60.0%
TTCCTCTCCGGTGACACAGC+AGG + Chr3:58985322-58985341 None:intergenic 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG - Chr3:58985367-58985386 MsG0380014735.01.T01:three_prime_UTR 60.0%
CACCTGCTGTGTCACCGGAG+AGG - Chr3:58985317-58985336 MsG0380014735.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 58985155 58990281 58985155 ID=MsG0380014735.01;Name=MsG0380014735.01
Chr3 mRNA 58985155 58990281 58985155 ID=MsG0380014735.01.T01;Parent=MsG0380014735.01;Name=MsG0380014735.01.T01;_AED=0.39;_eAED=0.42;_QI=42|0.88|0.9|1|1|1|10|414|538
Chr3 exon 58985155 58985666 58985155 ID=MsG0380014735.01.T01:exon:11460;Parent=MsG0380014735.01.T01
Chr3 exon 58985883 58985967 58985883 ID=MsG0380014735.01.T01:exon:11459;Parent=MsG0380014735.01.T01
Chr3 exon 58986131 58986196 58986131 ID=MsG0380014735.01.T01:exon:11458;Parent=MsG0380014735.01.T01
Chr3 exon 58986724 58986825 58986724 ID=MsG0380014735.01.T01:exon:11457;Parent=MsG0380014735.01.T01
Chr3 exon 58986918 58987055 58986918 ID=MsG0380014735.01.T01:exon:11456;Parent=MsG0380014735.01.T01
Chr3 exon 58987652 58987861 58987652 ID=MsG0380014735.01.T01:exon:11455;Parent=MsG0380014735.01.T01
Chr3 exon 58987985 58988200 58987985 ID=MsG0380014735.01.T01:exon:11454;Parent=MsG0380014735.01.T01
Chr3 exon 58988271 58988498 58988271 ID=MsG0380014735.01.T01:exon:11453;Parent=MsG0380014735.01.T01
Chr3 exon 58988595 58988702 58988595 ID=MsG0380014735.01.T01:exon:11452;Parent=MsG0380014735.01.T01
Chr3 exon 58989874 58990281 58989874 ID=MsG0380014735.01.T01:exon:11451;Parent=MsG0380014735.01.T01
Chr3 five_prime_UTR 58990240 58990281 58990240 ID=MsG0380014735.01.T01:five_prime_utr;Parent=MsG0380014735.01.T01
Chr3 CDS 58989874 58990239 58989874 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58988595 58988702 58988595 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58988271 58988498 58988271 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58987985 58988200 58987985 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58987652 58987861 58987652 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58986918 58987055 58986918 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58986724 58986825 58986724 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58986131 58986196 58986131 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58985883 58985967 58985883 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 CDS 58985569 58985666 58985569 ID=MsG0380014735.01.T01:cds;Parent=MsG0380014735.01.T01
Chr3 three_prime_UTR 58985155 58985568 58985155 ID=MsG0380014735.01.T01:three_prime_utr;Parent=MsG0380014735.01.T01
Gene Sequence

>MsG0380014735.01.T01

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACTCTCATCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGATGATGTTGAGGTAGAAGGAACAAGCTCTTCTCCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTATGTTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCGGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCCGTTGCCACAATCCTAACTCCCGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGTGCGTTCTGTTAAACTGTTCTTTGTTGCACCCGATATTGCCAGTGATATCTGTAATGATTTGATTCATATAGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCAGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGCATGTACCTTGGATCGGTCACTGGATTGGCCTTTTCACCTTTCCTAATTCATCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCTGAAATGTGGCCAGAAGAAAAGAAGTTGATTGCTACAAATGGTTTTTCCAAGGAACCCGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCAGTCTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCGTGGCTTACGATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGATAATGCAAACAGTTGGTTTTCTTGGCCCTGCTTTCTTCTTAACTCAACTGAGCCACATTGATTCTCCTGTGGTGGCTGTGTTGTGTATGACTTGCAGTCAGGGAACTGACGCATTCTCTCAGTCCGGACTATATTCAAACCATCAAGATATAGCTCCTCGATACTCTGGGATACTGCTCGGTCTATCAAATACTGCTGGAGTACTGGCTGGTGTTCTTGGAACAGCAGCTACAGGTTACATTCTACAGCATGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGTTGTATTTGGTTGGAACCGTGGTGTGGAACCTTTTCTCAACCGGTGAAAAGATCATAGACTAA

Protein sequence

>MsG0380014735.01.T01

MSSRALLFSFSPPSPSSSSSSSPLSRTRTLINHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGDDVEVEGTSSSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEVRSVKLFFVAPDIASDICNDLIHIGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMWPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*