AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008907.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008907.01.T01 MTR_2g460810 98.160 489 9 0 1 489 1 489 0.0 952
MsG0280008907.01.T01 MTR_0004s0650 54.886 481 187 4 24 487 31 498 0.0 524
MsG0280008907.01.T01 MTR_4g099450 55.031 487 208 4 3 489 2 477 1.74e-173 498
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008907.01.T01 AT2G13100 72.541 488 129 2 4 489 2 486 0.0 712
MsG0280008907.01.T01 AT2G13100 72.541 488 129 2 4 489 2 486 0.0 712
MsG0280008907.01.T01 AT3G47420 53.937 508 202 5 1 487 5 501 0.0 519
MsG0280008907.01.T01 AT3G47420 53.937 508 202 5 1 487 5 501 0.0 519
MsG0280008907.01.T01 AT3G47420 53.937 508 202 5 1 487 5 501 0.0 519
MsG0280008907.01.T01 AT1G30560 51.324 491 211 4 16 489 10 489 7.53e-177 506
MsG0280008907.01.T01 AT4G17550 50.854 527 217 3 1 486 1 526 2.14e-174 501
MsG0280008907.01.T01 AT4G25220 53.132 463 198 4 30 489 36 482 8.16e-171 491
MsG0280008907.01.T01 AT2G13100 73.092 249 64 1 241 489 89 334 1.73e-124 367
MsG0280008907.01.T01 AT2G13100 70.732 82 24 0 4 85 2 83 1.16e-31 125
MsG0280008907.01.T01 AT2G13100 77.982 218 48 0 272 489 83 300 3.81e-117 347
MsG0280008907.01.T01 AT2G13100 67.045 88 29 0 4 91 2 89 2.84e-32 125

Find 132 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAGAGAGAAGCTTTC+AGG 0.190851 2:+41406473 MsG0280008907.01.T01:CDS
TTACTCCATTGGCATGTATT+TGG 0.217319 2:+41405178 MsG0280008907.01.T01:CDS
ATCACCTTGATGTTTCTTTC+TGG 0.224719 2:+41406194 MsG0280008907.01.T01:CDS
TTGAGGTTGTTTCTTGTGTT+TGG 0.258719 2:+41405227 MsG0280008907.01.T01:CDS
CCTTGTGTTGTTGCAGTTGT+TGG 0.271567 2:+41405371 MsG0280008907.01.T01:CDS
CAGTTGTTGGGAATTGGCTT+GGG 0.271735 2:+41405384 MsG0280008907.01.T01:CDS
TAGTATTGTTAAAAGTGTTC+TGG 0.280648 2:+41405049 MsG0280008907.01.T01:CDS
TGATAATAAGAACACATATT+TGG 0.281967 2:-41404983 None:intergenic
TTTGATATTGGAGGAGTTCT+AGG 0.290006 2:+41406041 MsG0280008907.01.T01:CDS
GGTTATTGCTTCGGGTGTTT+TGG 0.290922 2:+41405475 MsG0280008907.01.T01:CDS
CTCATTTCAATTTCCATTCC+AGG 0.291532 2:-41405608 None:intergenic
ATCAAAGAGGGGATTGATAA+TGG 0.292694 2:+41405409 MsG0280008907.01.T01:CDS
CTATTGGTTGCAGCGGTTGC+TGG 0.298086 2:+41405975 MsG0280008907.01.T01:intron
TCAAATTCTTCGTCTGCTAT+TGG 0.299829 2:+41405710 MsG0280008907.01.T01:CDS
TTGCTTACACTTTCTTGTAT+TGG 0.304564 2:+41405801 MsG0280008907.01.T01:CDS
CATTGGTTCGGTTATTGCTT+CGG 0.314100 2:+41405466 MsG0280008907.01.T01:CDS
CTTTCAACAATATTTGATAT+TGG 0.314253 2:+41406029 MsG0280008907.01.T01:CDS
TGTGGAGTGTTTCAGTCAAT+TGG 0.315612 2:+41405344 MsG0280008907.01.T01:CDS
ACCTGTGTGCCTTATGTAGA+AGG 0.333717 2:-41405828 None:intergenic
TGAGGTTGTTTCTTGTGTTT+GGG 0.335721 2:+41405228 MsG0280008907.01.T01:CDS
TGGTTTGATGTTCATGTGTT+GGG 0.336491 2:+41405296 MsG0280008907.01.T01:CDS
GCTTTAGTGGTGGGAATTCT+CGG 0.342732 2:+41406282 MsG0280008907.01.T01:CDS
AACCAATTCAACCCTTGATT+CGG 0.343395 2:+41405085 MsG0280008907.01.T01:CDS
GGTTCTGTTGGAGCTGCTCT+TGG 0.349690 2:+41406341 MsG0280008907.01.T01:CDS
CACATATTTGGTGGAATAGT+AGG 0.350389 2:-41404971 None:intergenic
GTTCCCCGAGTTCCATTAAA+AGG 0.352130 2:-41405116 None:intergenic
GGGGATTGATAATGGGGATA+TGG 0.364452 2:+41405417 MsG0280008907.01.T01:CDS
ACCAATTCAACCCTTGATTC+GGG 0.365317 2:+41405086 MsG0280008907.01.T01:CDS
TCAAAGAGGGGATTGATAAT+GGG 0.369497 2:+41405410 MsG0280008907.01.T01:CDS
ACCCGAATCAAGGGTTGAAT+TGG 0.376330 2:-41405087 None:intergenic
GGTTGGTCGTTTGTGGTGCC+TGG 0.377762 2:+41405509 MsG0280008907.01.T01:CDS
TTGTGAATCCGGTGGATATA+GGG 0.382740 2:+41405576 MsG0280008907.01.T01:CDS
CTCGGTACGCAGGGCTTTAG+TGG 0.382958 2:+41406269 MsG0280008907.01.T01:CDS
GCAGTTGTTGGGAATTGGCT+TGG 0.384000 2:+41405383 MsG0280008907.01.T01:CDS
GTTTCTTGTGTTTGGGATGG+TGG 0.396297 2:+41405235 MsG0280008907.01.T01:CDS
TTGTTGCAGTTGTTGGGAAT+TGG 0.403901 2:+41405378 MsG0280008907.01.T01:CDS
GTTGTGAATCCGGTGGATAT+AGG 0.410528 2:+41405575 MsG0280008907.01.T01:CDS
TCCATTGGCATGTATTTGGC+TGG 0.414022 2:+41405182 MsG0280008907.01.T01:CDS
TGGCTGGTCATGTTGGTGAT+AGG 0.414837 2:+41405198 MsG0280008907.01.T01:CDS
ATTGGTTCGGTTATTGCTTC+GGG 0.416295 2:+41405467 MsG0280008907.01.T01:CDS
AGTATTGTTAAAAGTGTTCT+GGG 0.416808 2:+41405050 MsG0280008907.01.T01:CDS
CTTGTGTTGTTGCAGTTGTT+GGG 0.419466 2:+41405372 MsG0280008907.01.T01:CDS
GAATTTGAAATCGAACTATC+AGG 0.420709 2:-41405695 None:intergenic
ACCTCGGTTGGGAATATCAT+TGG 0.423859 2:+41405449 MsG0280008907.01.T01:CDS
TCTGTTTCTTGTTGTGAATC+CGG 0.429267 2:+41405565 MsG0280008907.01.T01:CDS
ATTGGTTACCCTTCTACATA+AGG 0.433887 2:+41405819 MsG0280008907.01.T01:CDS
CTGGTTTGATGTTCATGTGT+TGG 0.438300 2:+41405295 MsG0280008907.01.T01:CDS
TGGATGGGGTTGGTCGTTTG+TGG 0.439831 2:+41405502 MsG0280008907.01.T01:CDS
TTTCTTACTTCTTACTCCAT+TGG 0.444854 2:+41405167 MsG0280008907.01.T01:CDS
ACTGTTACTGCAATCATTGA+TGG 0.445070 2:+41406314 MsG0280008907.01.T01:CDS
AATCTATCTCACAAAACTGC+TGG 0.446010 2:+41406002 MsG0280008907.01.T01:CDS
GTGGAGTGTTTCAGTCAATT+GGG 0.451035 2:+41405345 MsG0280008907.01.T01:CDS
AGATAAGAGAGAAGCTTTCA+GGG 0.451142 2:+41406474 MsG0280008907.01.T01:CDS
GGTTGGGAATATCATTGGTT+CGG 0.456341 2:+41405454 MsG0280008907.01.T01:CDS
GTCGGTGTTCAGATTGTTTG+TGG 0.462172 2:+41405326 MsG0280008907.01.T01:CDS
GATATAGGGTTTGCGAGTCC+TGG 0.467048 2:+41405590 MsG0280008907.01.T01:CDS
TGGAATTCGCATACCTCGGT+TGG 0.474948 2:+41405437 MsG0280008907.01.T01:CDS
ATGCTTCCTTTCATGCATCT+AGG 0.475318 2:+41405018 MsG0280008907.01.T01:CDS
GGCTGCCGATCTCGGTACGC+AGG 0.479417 2:+41406259 MsG0280008907.01.T01:CDS
TGGAGCTAGGCTCAAACTCT+TGG 0.480620 2:-41404907 None:intergenic
AGCAGGTTACGTTTCAACTA+GGG 0.483135 2:+41406373 MsG0280008907.01.T01:CDS
CTTTAGTGGTGGGAATTCTC+GGG 0.483451 2:+41406283 MsG0280008907.01.T01:CDS
ATTGGCTTGGGGAATCAAAG+AGG 0.486300 2:+41405396 MsG0280008907.01.T01:CDS
TAGCAGGTTACGTTTCAACT+AGG 0.486302 2:+41406372 MsG0280008907.01.T01:CDS
ACTGCTGTGGCTGCCGATCT+CGG 0.489455 2:+41406251 MsG0280008907.01.T01:CDS
AAGGTGGCCAACCCGAATCA+AGG 0.495026 2:-41405097 None:intergenic
TGGTGGGAATTCTCGGGCAC+TGG 0.495438 2:+41406289 MsG0280008907.01.T01:CDS
TTTCTTGTGTTTGGGATGGT+GGG 0.499647 2:+41405236 MsG0280008907.01.T01:CDS
AATCATATCAGAAATGAAAC+CGG 0.508019 2:-41406075 None:intergenic
TCAACAATATTTGATATTGG+AGG 0.508821 2:+41406032 MsG0280008907.01.T01:CDS
GGTACGCAGGGCTTTAGTGG+TGG 0.512487 2:+41406272 MsG0280008907.01.T01:CDS
ACTGCAATCATTGATGGTAC+TGG 0.512877 2:+41406320 MsG0280008907.01.T01:CDS
TATTCTTGATTCAAGTTGCA+AGG 0.512896 2:+41406447 MsG0280008907.01.T01:CDS
AAAGCCCTGCGTACCGAGAT+CGG 0.516139 2:-41406264 None:intergenic
GTTGTTTCTTGTGTTTGGGA+TGG 0.516674 2:+41405232 MsG0280008907.01.T01:CDS
GCACGATACAAAAGCAGAGC+TGG 0.518122 2:-41406143 None:intergenic
GAATCAAGGGTTGAATTGGT+TGG 0.521050 2:-41405083 None:intergenic
GTGTTTGGGATGGTGGGCAG+CGG 0.524244 2:+41405242 MsG0280008907.01.T01:CDS
ACATATTTGGTGGAATAGTA+GGG 0.524391 2:-41404970 None:intergenic
GTTGAATTGGTTGGAACTGT+GGG 0.528850 2:-41405074 None:intergenic
GGAATTCGCATACCTCGGTT+GGG 0.531280 2:+41405438 MsG0280008907.01.T01:CDS
GAATCGATAGAAACAAGAAC+AGG 0.531762 2:-41406121 None:intergenic
CAAAGAGGGGATTGATAATG+GGG 0.532878 2:+41405411 MsG0280008907.01.T01:CDS
ATTCAACCCTTGATTCGGGT+TGG 0.534837 2:+41405090 MsG0280008907.01.T01:CDS
GTACGCAGGGCTTTAGTGGT+GGG 0.535609 2:+41406273 MsG0280008907.01.T01:CDS
ACTCGGGGAACTCACCGGCT+TGG 0.537297 2:+41405128 MsG0280008907.01.T01:CDS
TTAGAGGCGTGGAAAATACC+TGG 0.539044 2:+41405737 MsG0280008907.01.T01:CDS
ATCTATCTCACAAAACTGCT+GGG 0.540237 2:+41406003 MsG0280008907.01.T01:CDS
AGTTGTTGGGAATTGGCTTG+GGG 0.544754 2:+41405385 MsG0280008907.01.T01:CDS
GAAACGTAACCTGCTAAAAG+TGG 0.547953 2:-41406365 None:intergenic
AGAGATTCAGAGCTGGAGCT+AGG 0.548429 2:-41404920 None:intergenic
TAATAAGAACACATATTTGG+TGG 0.548927 2:-41404980 None:intergenic
GCTGCCGATCTCGGTACGCA+GGG 0.553404 2:+41406260 MsG0280008907.01.T01:CDS
CGAGATCAACCTCGCCAAGC+CGG 0.554092 2:-41405142 None:intergenic
AAAGCAAACGGAGCGACTCC+AGG 0.556148 2:-41405755 None:intergenic
GGTTGAATTGGTTGGAACTG+TGG 0.556170 2:-41405075 None:intergenic
AGGGTTTGCGAGTCCTGGAA+TGG 0.556603 2:+41405595 MsG0280008907.01.T01:CDS
GGGAACTCACCGGCTTGGCG+AGG 0.557718 2:+41405133 MsG0280008907.01.T01:CDS
ATGGAACTCGGGGAACTCAC+CGG 0.562728 2:+41405123 MsG0280008907.01.T01:CDS
GCAGTTGTAATTAGCGAGTA+CGG 0.564151 2:-41406233 None:intergenic
ATTGATGGTACTGGTTCTGT+TGG 0.568619 2:+41406329 MsG0280008907.01.T01:CDS
AGGCTTCCTAGATGCATGAA+AGG 0.573970 2:-41405024 None:intergenic
GGTTTGATGTTCATGTGTTG+GGG 0.575219 2:+41405297 MsG0280008907.01.T01:CDS
TTGGCTTGGGGAATCAAAGA+GGG 0.575740 2:+41405397 MsG0280008907.01.T01:CDS
ATGTATTTGGCTGGTCATGT+TGG 0.577593 2:+41405191 MsG0280008907.01.T01:CDS
TTTGGAAAGAGATTCAGAGC+TGG 0.577955 2:-41404927 None:intergenic
CCAACAACTGCAACAACACA+AGG 0.578535 2:-41405371 None:intergenic
AAATCCAGAAAGAAACATCA+AGG 0.579928 2:-41406198 None:intergenic
GCAGGTTACGTTTCAACTAG+GGG 0.580321 2:+41406374 MsG0280008907.01.T01:CDS
GTTCTAGGCGGAATCACCGC+CGG 0.584479 2:+41406056 MsG0280008907.01.T01:CDS
GTTACGTTTCAACTAGGGGA+TGG 0.588834 2:+41406378 MsG0280008907.01.T01:CDS
TGTTGAAAGGGACGGTGCAG+AGG 0.590416 2:+41405631 MsG0280008907.01.T01:CDS
ACGAAAATGATCGAAACTCC+AGG 0.597653 2:-41405527 None:intergenic
AATTGAAATGAGTGTTGAAA+GGG 0.597953 2:+41405619 MsG0280008907.01.T01:CDS
CTCGCAAACCCTATATCCAC+CGG 0.599278 2:-41405584 None:intergenic
TCTGCAGAAAGTCGAATCAG+AGG 0.600067 2:+41405655 MsG0280008907.01.T01:CDS
AGGTGGCCAACCCGAATCAA+GGG 0.601656 2:-41405096 None:intergenic
ACCAGCCAAATACATGCCAA+TGG 0.609265 2:-41405183 None:intergenic
CTCGCTAATTACAACTGCTG+TGG 0.611850 2:+41406238 MsG0280008907.01.T01:CDS
TTGGTGATAGGATTGATTTG+AGG 0.616292 2:+41405210 MsG0280008907.01.T01:CDS
CCTGTGTGCCTTATGTAGAA+GGG 0.616762 2:-41405827 None:intergenic
CCCCGAGTTCCATTAAAAGG+TGG 0.619590 2:-41405113 None:intergenic
CCCTTCTACATAAGGCACAC+AGG 0.627165 2:+41405827 MsG0280008907.01.T01:CDS
AAATTGAAATGAGTGTTGAA+AGG 0.632392 2:+41405618 MsG0280008907.01.T01:CDS
GATATGGAATTCGCATACCT+CGG 0.635544 2:+41405433 MsG0280008907.01.T01:CDS
GAGTGTTTCAGTCAATTGGG+TGG 0.653771 2:+41405348 MsG0280008907.01.T01:CDS
GTTTCTTGTTGTGAATCCGG+TGG 0.666770 2:+41405568 MsG0280008907.01.T01:CDS
ACCAATGATATTCCCAACCG+AGG 0.672100 2:-41405450 None:intergenic
TGGCTTGGGGAATCAAAGAG+GGG 0.677167 2:+41405398 MsG0280008907.01.T01:CDS
CATATCAGAAATGAAACCGG+CGG 0.690344 2:-41406072 None:intergenic
GATATTGGAGGAGTTCTAGG+CGG 0.700532 2:+41406044 MsG0280008907.01.T01:CDS
GAAATGAGTGTTGAAAGGGA+CGG 0.799585 2:+41405623 MsG0280008907.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATCATAATTCA+TGG - Chr2:41405938-41405957 None:intergenic 10.0%
!! CTTTCAACAATATTTGATAT+TGG + Chr2:41406029-41406048 MsG0280008907.01.T01:CDS 20.0%
!! TATGTAAACTGAATAAGATA+TGG - Chr2:41405911-41405930 None:intergenic 20.0%
!! TGATAATAAGAACACATATT+TGG - Chr2:41404986-41405005 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG + Chr2:41405264-41405283 MsG0280008907.01.T01:CDS 20.0%
!!! TTGAATTCGTTATTTTCTAT+TGG + Chr2:41405959-41405978 MsG0280008907.01.T01:intron 20.0%
! AAAAAGAGACAAAAAGCAAA+CGG - Chr2:41405770-41405789 None:intergenic 25.0%
! AATCATATCAGAAATGAAAC+CGG - Chr2:41406078-41406097 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG - Chr2:41404983-41405002 None:intergenic 25.0%
! TCAACAATATTTGATATTGG+AGG + Chr2:41406032-41406051 MsG0280008907.01.T01:CDS 25.0%
!! AGAACACTTTTAACAATACT+AGG - Chr2:41405050-41405069 None:intergenic 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG + Chr2:41405618-41405637 MsG0280008907.01.T01:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG + Chr2:41405619-41405638 MsG0280008907.01.T01:CDS 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG + Chr2:41405050-41405069 MsG0280008907.01.T01:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG + Chr2:41405263-41405282 MsG0280008907.01.T01:CDS 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG + Chr2:41405049-41405068 MsG0280008907.01.T01:CDS 25.0%
AAATCCAGAAAGAAACATCA+AGG - Chr2:41406201-41406220 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG + Chr2:41405801-41405820 MsG0280008907.01.T01:CDS 30.0%
TTTCTTACTTCTTACTCCAT+TGG + Chr2:41405167-41405186 MsG0280008907.01.T01:CDS 30.0%
! ACACTTTTAACAATACTAGG+AGG - Chr2:41405047-41405066 None:intergenic 30.0%
! ACATATTTGGTGGAATAGTA+GGG - Chr2:41404973-41404992 None:intergenic 30.0%
! GAATTTGAAATCGAACTATC+AGG - Chr2:41405698-41405717 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG + Chr2:41406202-41406221 MsG0280008907.01.T01:CDS 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG + Chr2:41406447-41406466 MsG0280008907.01.T01:CDS 30.0%
!! TTATTTTCTATTGGTTGCAG+CGG + Chr2:41405968-41405987 MsG0280008907.01.T01:intron 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG + Chr2:41405269-41405288 MsG0280008907.01.T01:CDS 30.0%
AACCAATTCAACCCTTGATT+CGG + Chr2:41405085-41405104 MsG0280008907.01.T01:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG + Chr2:41406002-41406021 MsG0280008907.01.T01:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG + Chr2:41406314-41406333 MsG0280008907.01.T01:CDS 35.0%
AGATAAGAGAGAAGCTTTCA+GGG + Chr2:41406474-41406493 MsG0280008907.01.T01:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG + Chr2:41405409-41405428 MsG0280008907.01.T01:CDS 35.0%
ATCACCTTGATGTTTCTTTC+TGG + Chr2:41406194-41406213 MsG0280008907.01.T01:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG + Chr2:41406003-41406022 MsG0280008907.01.T01:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG + Chr2:41405819-41405838 MsG0280008907.01.T01:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG - Chr2:41405611-41405630 None:intergenic 35.0%
GAATCGATAGAAACAAGAAC+AGG - Chr2:41406124-41406143 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG + Chr2:41405710-41405729 MsG0280008907.01.T01:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG + Chr2:41405296-41405315 MsG0280008907.01.T01:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG + Chr2:41405178-41405197 MsG0280008907.01.T01:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG + Chr2:41406041-41406060 MsG0280008907.01.T01:CDS 35.0%
! AGTTTCGATCATTTTCGTTG+GGG + Chr2:41405532-41405551 MsG0280008907.01.T01:CDS 35.0%
! CACATATTTGGTGGAATAGT+AGG - Chr2:41404974-41404993 None:intergenic 35.0%
! GAGTTTCGATCATTTTCGTT+GGG + Chr2:41405531-41405550 MsG0280008907.01.T01:CDS 35.0%
! GTTTCGTCTATTTTCTTTGC+TGG + Chr2:41406422-41406441 MsG0280008907.01.T01:CDS 35.0%
! TCAAAGAGGGGATTGATAAT+GGG + Chr2:41405410-41405429 MsG0280008907.01.T01:CDS 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG + Chr2:41405565-41405584 MsG0280008907.01.T01:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG + Chr2:41405721-41405740 MsG0280008907.01.T01:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG + Chr2:41405228-41405247 MsG0280008907.01.T01:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG + Chr2:41405227-41405246 MsG0280008907.01.T01:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG + Chr2:41405210-41405229 MsG0280008907.01.T01:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG + Chr2:41406209-41406228 MsG0280008907.01.T01:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG + Chr2:41405276-41405295 MsG0280008907.01.T01:CDS 35.0%
ACCAATTCAACCCTTGATTC+GGG + Chr2:41405086-41405105 MsG0280008907.01.T01:CDS 40.0%
ACGAAAATGATCGAAACTCC+AGG - Chr2:41405530-41405549 None:intergenic 40.0%
AGCAGGTTACGTTTCAACTA+GGG + Chr2:41406373-41406392 MsG0280008907.01.T01:CDS 40.0%
ATGCTTCCTTTCATGCATCT+AGG + Chr2:41405018-41405037 MsG0280008907.01.T01:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG - Chr2:41406075-41406094 None:intergenic 40.0%
GAAACGTAACCTGCTAAAAG+TGG - Chr2:41406368-41406387 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG - Chr2:41405086-41405105 None:intergenic 40.0%
GAGATAAGAGAGAAGCTTTC+AGG + Chr2:41406473-41406492 MsG0280008907.01.T01:CDS 40.0%
GATATGGAATTCGCATACCT+CGG + Chr2:41405433-41405452 MsG0280008907.01.T01:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG - Chr2:41406236-41406255 None:intergenic 40.0%
GGTTTGATGTTCATGTGTTG+GGG + Chr2:41405297-41405316 MsG0280008907.01.T01:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG - Chr2:41405077-41405096 None:intergenic 40.0%
TAGCAGGTTACGTTTCAACT+AGG + Chr2:41406372-41406391 MsG0280008907.01.T01:CDS 40.0%
TTGTGAATCCGGTGGATATA+GGG + Chr2:41405576-41405595 MsG0280008907.01.T01:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG + Chr2:41405378-41405397 MsG0280008907.01.T01:CDS 40.0%
TTTGGAAAGAGATTCAGAGC+TGG - Chr2:41404930-41404949 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG + Chr2:41406320-41406339 MsG0280008907.01.T01:CDS 40.0%
! ATGTATTTGGCTGGTCATGT+TGG + Chr2:41405191-41405210 MsG0280008907.01.T01:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG + Chr2:41405295-41405314 MsG0280008907.01.T01:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG + Chr2:41405372-41405391 MsG0280008907.01.T01:CDS 40.0%
! GATCATTTTCGTTGGGGTTT+TGG + Chr2:41405538-41405557 MsG0280008907.01.T01:CDS 40.0%
! GGAGTTTCGATCATTTTCGT+TGG + Chr2:41405530-41405549 MsG0280008907.01.T01:CDS 40.0%
! GGTTGGGAATATCATTGGTT+CGG + Chr2:41405454-41405473 MsG0280008907.01.T01:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG + Chr2:41405345-41405364 MsG0280008907.01.T01:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG + Chr2:41406150-41406169 MsG0280008907.01.T01:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG + Chr2:41405344-41405363 MsG0280008907.01.T01:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+GGG + Chr2:41405236-41405255 MsG0280008907.01.T01:CDS 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG - Chr2:41404960-41404979 None:intergenic 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG + Chr2:41406329-41406348 MsG0280008907.01.T01:CDS 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG + Chr2:41405467-41405486 MsG0280008907.01.T01:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG + Chr2:41405411-41405430 MsG0280008907.01.T01:CDS 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG + Chr2:41405466-41405485 MsG0280008907.01.T01:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG + Chr2:41405726-41405745 MsG0280008907.01.T01:CDS 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG + Chr2:41406149-41406168 MsG0280008907.01.T01:CDS 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG + Chr2:41405623-41405642 MsG0280008907.01.T01:CDS 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG - Chr2:41404961-41404980 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG - Chr2:41404962-41404981 None:intergenic 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG + Chr2:41405232-41405251 MsG0280008907.01.T01:CDS 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG - Chr2:41404963-41404982 None:intergenic 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG + Chr2:41405308-41405327 MsG0280008907.01.T01:CDS 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG + Chr2:41405487-41405506 MsG0280008907.01.T01:CDS 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG + Chr2:41405488-41405507 MsG0280008907.01.T01:CDS 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG + Chr2:41405492-41405511 MsG0280008907.01.T01:CDS 40.0%
ACCAATGATATTCCCAACCG+AGG - Chr2:41405453-41405472 None:intergenic 45.0%
ACCAGCCAAATACATGCCAA+TGG - Chr2:41405186-41405205 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG - Chr2:41405090-41405109 None:intergenic 45.0%
ACCTCGGTTGGGAATATCAT+TGG + Chr2:41405449-41405468 MsG0280008907.01.T01:CDS 45.0%
ACCTGTGTGCCTTATGTAGA+AGG - Chr2:41405831-41405850 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG - Chr2:41405027-41405046 None:intergenic 45.0%
CCAACAACTGCAACAACACA+AGG - Chr2:41405374-41405393 None:intergenic 45.0%
CCTGTGTGCCTTATGTAGAA+GGG - Chr2:41405830-41405849 None:intergenic 45.0%
CTCGCTAATTACAACTGCTG+TGG + Chr2:41406238-41406257 MsG0280008907.01.T01:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG + Chr2:41405348-41405367 MsG0280008907.01.T01:CDS 45.0%
GCAGGTTACGTTTCAACTAG+GGG + Chr2:41406374-41406393 MsG0280008907.01.T01:CDS 45.0%
GGTTGAATTGGTTGGAACTG+TGG - Chr2:41405078-41405097 None:intergenic 45.0%
GTTACGTTTCAACTAGGGGA+TGG + Chr2:41406378-41406397 MsG0280008907.01.T01:CDS 45.0%
GTTCCCCGAGTTCCATTAAA+AGG - Chr2:41405119-41405138 None:intergenic 45.0%
GTTGTGAATCCGGTGGATAT+AGG + Chr2:41405575-41405594 MsG0280008907.01.T01:CDS 45.0%
TCCATTGGCATGTATTTGGC+TGG + Chr2:41405182-41405201 MsG0280008907.01.T01:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG + Chr2:41405655-41405674 MsG0280008907.01.T01:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG + Chr2:41405384-41405403 MsG0280008907.01.T01:CDS 45.0%
! CCACCTTTTAATGGAACTCG+GGG + Chr2:41405113-41405132 MsG0280008907.01.T01:CDS 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG + Chr2:41405371-41405390 MsG0280008907.01.T01:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG + Chr2:41406283-41406302 MsG0280008907.01.T01:CDS 45.0%
! GCCACCTTTTAATGGAACTC+GGG + Chr2:41405112-41405131 MsG0280008907.01.T01:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG + Chr2:41406282-41406301 MsG0280008907.01.T01:CDS 45.0%
! GGCCACCTTTTAATGGAACT+CGG + Chr2:41405111-41405130 MsG0280008907.01.T01:CDS 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG + Chr2:41405475-41405494 MsG0280008907.01.T01:CDS 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG + Chr2:41405326-41405345 MsG0280008907.01.T01:CDS 45.0%
! GTTTCTTGTGTTTGGGATGG+TGG + Chr2:41405235-41405254 MsG0280008907.01.T01:CDS 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG + Chr2:41405568-41405587 MsG0280008907.01.T01:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG + Chr2:41405737-41405756 MsG0280008907.01.T01:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG + Chr2:41405385-41405404 MsG0280008907.01.T01:CDS 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG + Chr2:41405090-41405109 MsG0280008907.01.T01:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG + Chr2:41405396-41405415 MsG0280008907.01.T01:CDS 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG + Chr2:41406044-41406063 MsG0280008907.01.T01:CDS 45.0%
!! GGGGATTGATAATGGGGATA+TGG + Chr2:41405417-41405436 MsG0280008907.01.T01:CDS 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG + Chr2:41405397-41405416 MsG0280008907.01.T01:CDS 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG + Chr2:41405486-41405505 MsG0280008907.01.T01:CDS 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG + Chr2:41405482-41405501 MsG0280008907.01.T01:CDS 45.0%
AGAGATTCAGAGCTGGAGCT+AGG - Chr2:41404923-41404942 None:intergenic 50.0%
CCCCGAGTTCCATTAAAAGG+TGG - Chr2:41405116-41405135 None:intergenic 50.0%
CCCTTCTACATAAGGCACAC+AGG + Chr2:41405827-41405846 MsG0280008907.01.T01:CDS 50.0%
CTCGCAAACCCTATATCCAC+CGG - Chr2:41405587-41405606 None:intergenic 50.0%
GATATAGGGTTTGCGAGTCC+TGG + Chr2:41405590-41405609 MsG0280008907.01.T01:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG - Chr2:41406146-41406165 None:intergenic 50.0%
GCAGTTGTTGGGAATTGGCT+TGG + Chr2:41405383-41405402 MsG0280008907.01.T01:CDS 50.0%
GGAATTCGCATACCTCGGTT+GGG + Chr2:41405438-41405457 MsG0280008907.01.T01:CDS 50.0%
TGGAATTCGCATACCTCGGT+TGG + Chr2:41405437-41405456 MsG0280008907.01.T01:CDS 50.0%
TGGAGCTAGGCTCAAACTCT+TGG - Chr2:41404910-41404929 None:intergenic 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG + Chr2:41405398-41405417 MsG0280008907.01.T01:CDS 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG + Chr2:41406356-41406375 MsG0280008907.01.T01:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG + Chr2:41405198-41405217 MsG0280008907.01.T01:CDS 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG - Chr2:41404948-41404967 None:intergenic 50.0%
!!! TCGGGTTGGCCACCTTTTAA+TGG + Chr2:41405104-41405123 MsG0280008907.01.T01:CDS 50.0%
AAAGCAAACGGAGCGACTCC+AGG - Chr2:41405758-41405777 None:intergenic 55.0%
AAAGCCCTGCGTACCGAGAT+CGG - Chr2:41406267-41406286 None:intergenic 55.0%
AAGGTGGCCAACCCGAATCA+AGG - Chr2:41405100-41405119 None:intergenic 55.0%
AGGGTTTGCGAGTCCTGGAA+TGG + Chr2:41405595-41405614 MsG0280008907.01.T01:CDS 55.0%
AGGTGGCCAACCCGAATCAA+GGG - Chr2:41405099-41405118 None:intergenic 55.0%
ATGGAACTCGGGGAACTCAC+CGG + Chr2:41405123-41405142 MsG0280008907.01.T01:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG + Chr2:41406341-41406360 MsG0280008907.01.T01:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG + Chr2:41405631-41405650 MsG0280008907.01.T01:CDS 55.0%
! CTATTGGTTGCAGCGGTTGC+TGG + Chr2:41405975-41405994 MsG0280008907.01.T01:intron 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG + Chr2:41406273-41406292 MsG0280008907.01.T01:CDS 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG - Chr2:41404953-41404972 None:intergenic 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG + Chr2:41405502-41405521 MsG0280008907.01.T01:CDS 55.0%
ACTGCTGTGGCTGCCGATCT+CGG + Chr2:41406251-41406270 MsG0280008907.01.T01:CDS 60.0%
CGAGATCAACCTCGCCAAGC+CGG - Chr2:41405145-41405164 None:intergenic 60.0%
TGGTGGGAATTCTCGGGCAC+TGG + Chr2:41406289-41406308 MsG0280008907.01.T01:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG + Chr2:41406269-41406288 MsG0280008907.01.T01:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG + Chr2:41406272-41406291 MsG0280008907.01.T01:CDS 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG + Chr2:41405509-41405528 MsG0280008907.01.T01:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG + Chr2:41406056-41406075 MsG0280008907.01.T01:CDS 60.0%
!! GTGTTTGGGATGGTGGGCAG+CGG + Chr2:41405242-41405261 MsG0280008907.01.T01:CDS 60.0%
GCTGCCGATCTCGGTACGCA+GGG + Chr2:41406260-41406279 MsG0280008907.01.T01:CDS 65.0%
! ACTCGGGGAACTCACCGGCT+TGG + Chr2:41405128-41405147 MsG0280008907.01.T01:CDS 65.0%
GGCTGCCGATCTCGGTACGC+AGG + Chr2:41406259-41406278 MsG0280008907.01.T01:CDS 70.0%
!! GGGAACTCACCGGCTTGGCG+AGG + Chr2:41405133-41405152 MsG0280008907.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 41404894 41406502 41404894 ID=MsG0280008907.01;Name=MsG0280008907.01
Chr2 mRNA 41404894 41406502 41404894 ID=MsG0280008907.01.T01;Parent=MsG0280008907.01;Name=MsG0280008907.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|489
Chr2 exon 41404894 41405848 41404894 ID=MsG0280008907.01.T01:exon:29890;Parent=MsG0280008907.01.T01
Chr2 exon 41405988 41406502 41405988 ID=MsG0280008907.01.T01:exon:29889;Parent=MsG0280008907.01.T01
Chr2 CDS 41404894 41405848 41404894 ID=MsG0280008907.01.T01:cds;Parent=MsG0280008907.01.T01
Chr2 CDS 41405988 41406502 41405988 ID=MsG0280008907.01.T01:cds;Parent=MsG0280008907.01.T01
Gene Sequence

>MsG0280008907.01.T01

ATGGAATCAAATTCCAAGAGTTTGAGCCTAGCTCCAGCTCTGAATCTCTTTCCAAACCTGAAACCCCCTCACAAAACCCTACTATTCCACCAAATATGTGTTCTTATTATCACATTTCTTGCATATGCTTCCTTTCATGCATCTAGGAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCACCTTTTAATGGAACTCGGGGAACTCACCGGCTTGGCGAGGTTGATCTCGCATTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCGGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAGTTTCGATCATTTTCGTTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCGGTGGATATAGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAAGGGACGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATCTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTACGTTTCAACTAGGGGATGGAACAGTGTATTTTTTATGCTCGTTTCGTCTATTTTCTTTGCTGGTTTATTCTTGATTCAAGTTGCAAGGACTGAGATAAGAGAGAAGCTTTCAGGGAAGTGA

Protein sequence

>MsG0280008907.01.T01

MESNSKSLSLAPALNLFPNLKPPHKTLLFHQICVLIITFLAYASFHASRKPPSIVKSVLGPTVPTNSTLDSGWPPFNGTRGTHRLGEVDLAFLTSYSIGMYLAGHVGDRIDLRLFLVFGMVGSGFFTILFGLGYWFDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKRGLIMGIWNSHTSVGNIIGSVIASGVLEFGWGWSFVVPGVSIIFVGVLVFLFLVVNPVDIGFASPGMEIEMSVERDGAEDLQKVESEEAKLIDPDSSISNSSSAIGFLEAWKIPGVAPFAFCLFFSKFVAYTFLYWLPFYIRHTAVAGVNLSHKTAGLLSTIFDIGGVLGGITAGFISDMIEARAVTSILFLFLSIPALLLYRAFGSISMFTNITLMFLSGFLVNGPYSLITTAVAADLGTQGFSGGNSRALATVTAIIDGTGSVGAALGPLLAGYVSTRGWNSVFFMLVSSIFFAGLFLIQVARTEIREKLSGK*