Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045582.01.T01 | XP_003629203.1 | 75 | 216 | 3 | 2 | 1 | 170 | 95 | 305 | 6.35E-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045582.01.T01 | G7LA88 | 75.000 | 216 | 3 | 2 | 1 | 170 | 95 | 305 | 3.03e-102 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047912.01 | MsG0880045582.01 | 0.805856 | 1.090923e-49 | 5.834115e-47 |
| MsG0080048765.01 | MsG0880045582.01 | 0.802129 | 6.494641e-49 | 3.156439e-46 |
| MsG0180000797.01 | MsG0880045582.01 | 0.802418 | 5.662857e-49 | 2.772680e-46 |
| MsG0180000822.01 | MsG0880045582.01 | 0.808482 | 3.031255e-50 | 1.735237e-47 |
| MsG0180001178.01 | MsG0880045582.01 | 0.800925 | 1.146606e-48 | 5.405430e-46 |
| MsG0180001294.01 | MsG0880045582.01 | 0.816806 | 4.572863e-52 | 3.273000e-49 |
| MsG0180001565.01 | MsG0880045582.01 | 0.810285 | 1.243443e-50 | 7.464856e-48 |
| MsG0180001566.01 | MsG0880045582.01 | 0.811682 | 6.196114e-51 | 3.859945e-48 |
| MsG0180001911.01 | MsG0880045582.01 | 0.824356 | 8.438379e-54 | 7.456372e-51 |
| MsG0180002273.01 | MsG0880045582.01 | 0.803904 | 2.790210e-49 | 1.419128e-46 |
| MsG0880044546.01 | MsG0880045582.01 | 0.814479 | 1.508751e-51 | 1.013528e-48 |
| MsG0880044917.01 | MsG0880045582.01 | 0.806516 | 7.918457e-50 | 4.306541e-47 |
| MsG0880045582.01 | MsG0880045583.01 | 0.908533 | 1.541661e-81 | 2.872116e-77 |
| MsG0880045582.01 | MsG0880045687.01 | 0.819958 | 8.833819e-53 | 6.897665e-50 |
| MsG0880045582.01 | MsG0880046113.01 | 0.801519 | 8.667901e-49 | 4.147950e-46 |
| MsG0880045582.01 | MsG0880046762.01 | 0.841717 | 4.012558e-58 | 5.946612e-55 |
| MsG0880045582.01 | MsG0880046933.01 | 0.816161 | 6.378100e-52 | 4.485334e-49 |
| MsG0880045582.01 | MsG0880047016.01 | 0.802497 | 5.454538e-49 | 2.675876e-46 |
| MsG0880045582.01 | MsG0880047590.01 | 0.811234 | 7.751901e-51 | 4.772724e-48 |
| MsG0880045582.01 | MsG0880047607.01 | 0.807550 | 4.784729e-50 | 2.672746e-47 |
| MsG0180003303.01 | MsG0880045582.01 | 0.800631 | 1.316666e-48 | 6.160883e-46 |
| MsG0180003444.01 | MsG0880045582.01 | 0.814775 | 1.297689e-51 | 8.786540e-49 |
| MsG0180004320.01 | MsG0880045582.01 | 0.802387 | 5.746685e-49 | 2.811527e-46 |
| MsG0180004388.01 | MsG0880045582.01 | 0.804460 | 2.137509e-49 | 1.102716e-46 |
| MsG0180004730.01 | MsG0880045582.01 | 0.829289 | 5.594179e-55 | 5.701722e-52 |
| MsG0180004767.01 | MsG0880045582.01 | 0.801229 | 9.934087e-49 | 4.719274e-46 |
| MsG0180005125.01 | MsG0880045582.01 | 0.828626 | 8.098730e-55 | 8.094057e-52 |
| MsG0180006016.01 | MsG0880045582.01 | 0.806081 | 9.778984e-50 | 5.259757e-47 |
| MsG0180006023.01 | MsG0880045582.01 | 0.847801 | 9.187580e-60 | 1.651949e-56 |
| MsG0180006226.01 | MsG0880045582.01 | -0.810430 | 1.157256e-50 | 6.974089e-48 |
| MsG0180006235.01 | MsG0880045582.01 | 0.816724 | 4.772175e-52 | 3.407982e-49 |
| MsG0780040488.01 | MsG0880045582.01 | 0.846912 | 1.612051e-59 | 2.817267e-56 |
| MsG0780040861.01 | MsG0880045582.01 | 0.855019 | 8.352198e-62 | 1.901539e-58 |
| MsG0780040929.01 | MsG0880045582.01 | 0.815273 | 1.005757e-51 | 6.902911e-49 |
| MsG0780041399.01 | MsG0880045582.01 | 0.807368 | 5.229568e-50 | 2.907448e-47 |
| MsG0780041423.01 | MsG0880045582.01 | 0.800238 | 1.582735e-48 | 7.332279e-46 |
| MsG0780041469.01 | MsG0880045582.01 | 0.814864 | 1.240024e-51 | 8.416262e-49 |
| MsG0880042811.01 | MsG0880045582.01 | 0.827449 | 1.555330e-54 | 1.502067e-51 |
| MsG0880042829.01 | MsG0880045582.01 | 0.801103 | 1.054395e-48 | 4.993346e-46 |
| MsG0280010614.01 | MsG0880045582.01 | 0.810688 | 1.017782e-50 | 6.176249e-48 |
| MsG0280011070.01 | MsG0880045582.01 | 0.804722 | 1.884606e-49 | 9.789286e-47 |
| MsG0280011105.01 | MsG0880045582.01 | 0.804107 | 2.532226e-49 | 1.294557e-46 |
| MsG0280011235.01 | MsG0880045582.01 | 0.804196 | 2.426438e-49 | 1.243276e-46 |
| MsG0280011293.01 | MsG0880045582.01 | 0.810079 | 1.377673e-50 | 8.226402e-48 |
| MsG0380012124.01 | MsG0880045582.01 | 0.805707 | 1.172138e-49 | 6.244727e-47 |
| MsG0380014118.01 | MsG0880045582.01 | 0.835763 | 1.388619e-56 | 1.714684e-53 |
| MsG0380014576.01 | MsG0880045582.01 | 0.803870 | 2.835370e-49 | 1.440826e-46 |
| MsG0680031114.01 | MsG0880045582.01 | 0.802340 | 5.878328e-49 | 2.872359e-46 |
| MsG0680031133.01 | MsG0880045582.01 | 0.831889 | 1.292385e-55 | 1.421541e-52 |
| MsG0680031651.01 | MsG0880045582.01 | 0.813896 | 2.029699e-51 | 1.342057e-48 |
| MsG0680031694.01 | MsG0880045582.01 | 0.810806 | 9.598246e-51 | 5.842821e-48 |
| MsG0680033391.01 | MsG0880045582.01 | 0.811421 | 7.059436e-51 | 4.367971e-48 |
| MsG0680034061.01 | MsG0880045582.01 | 0.841229 | 5.394303e-58 | 7.873844e-55 |
| MsG0480018462.01 | MsG0880045582.01 | 0.823971 | 1.038954e-53 | 9.081643e-51 |
| MsG0480018846.01 | MsG0880045582.01 | 0.800849 | 1.188398e-48 | 5.591623e-46 |
| MsG0480020372.01 | MsG0880045582.01 | 0.809030 | 2.314860e-50 | 1.344343e-47 |
| MsG0480020445.01 | MsG0880045582.01 | 0.804997 | 1.651071e-49 | 8.636656e-47 |
| MsG0480020591.01 | MsG0880045582.01 | 0.827657 | 1.386441e-54 | 1.346931e-51 |
| MsG0480021034.01 | MsG0880045582.01 | 0.803141 | 4.016095e-49 | 2.002820e-46 |
| MsG0480022094.01 | MsG0880045582.01 | 0.815418 | 9.339824e-52 | 6.435767e-49 |
| MsG0480022597.01 | MsG0880045582.01 | 0.802516 | 5.405291e-49 | 2.652979e-46 |
| MsG0480023500.01 | MsG0880045582.01 | 0.806507 | 7.953288e-50 | 4.324502e-47 |
| MsG0480023707.01 | MsG0880045582.01 | 0.805387 | 1.368145e-49 | 7.228583e-47 |
| MsG0580024035.01 | MsG0880045582.01 | 0.804736 | 1.871635e-49 | 9.725687e-47 |
| MsG0580024157.01 | MsG0880045582.01 | 0.804940 | 1.696733e-49 | 8.863199e-47 |
| MsG0580024241.01 | MsG0880045582.01 | 0.810932 | 9.015120e-51 | 5.506819e-48 |
| MsG0580024374.01 | MsG0880045582.01 | 0.803593 | 3.237567e-49 | 1.633508e-46 |
| MsG0580024458.01 | MsG0880045582.01 | -0.802013 | 6.861855e-49 | 3.325030e-46 |
| MsG0580024960.01 | MsG0880045582.01 | 0.802390 | 5.739653e-49 | 2.808265e-46 |
| MsG0580025352.01 | MsG0880045582.01 | 0.802093 | 6.606755e-49 | 3.208021e-46 |
| MsG0380015779.01 | MsG0880045582.01 | 0.813989 | 1.936163e-51 | 1.283374e-48 |
| MsG0380015793.01 | MsG0880045582.01 | -0.814234 | 1.709291e-51 | 1.140594e-48 |
| MsG0380016102.01 | MsG0880045582.01 | 0.832675 | 8.256781e-56 | 9.294248e-53 |
| MsG0380016227.01 | MsG0880045582.01 | 0.825987 | 3.472318e-54 | 3.215060e-51 |
| MsG0380016483.01 | MsG0880045582.01 | 0.824394 | 8.267896e-54 | 7.313543e-51 |
| MsG0380016752.01 | MsG0880045582.01 | 0.801936 | 7.117983e-49 | 3.442320e-46 |
| MsG0380016765.01 | MsG0880045582.01 | 0.802641 | 5.094535e-49 | 2.508449e-46 |
| MsG0380017226.01 | MsG0880045582.01 | 0.821065 | 4.921677e-53 | 3.963157e-50 |
| MsG0380017403.01 | MsG0880045582.01 | 0.804391 | 2.209925e-49 | 1.138039e-46 |
| MsG0380017604.01 | MsG0880045582.01 | 0.818004 | 2.457382e-52 | 1.817598e-49 |
| MsG0380017631.01 | MsG0880045582.01 | 0.828715 | 7.707031e-55 | 7.721905e-52 |
| MsG0380018009.01 | MsG0880045582.01 | 0.808147 | 3.573252e-50 | 2.027546e-47 |
| MsG0580026595.01 | MsG0880045582.01 | 0.803147 | 4.004920e-49 | 1.997537e-46 |
| MsG0580027628.01 | MsG0880045582.01 | 0.803912 | 2.778877e-49 | 1.413679e-46 |
| MsG0580028605.01 | MsG0880045582.01 | 0.831900 | 1.283906e-55 | 1.412669e-52 |
| MsG0580029258.01 | MsG0880045582.01 | 0.800619 | 1.323867e-48 | 6.192642e-46 |
| MsG0580030235.01 | MsG0880045582.01 | 0.813711 | 2.228912e-51 | 1.466458e-48 |
| MsG0680030436.01 | MsG0880045582.01 | 0.832202 | 1.081154e-55 | 1.199975e-52 |
| MsG0680030684.01 | MsG0880045582.01 | 0.807199 | 5.679358e-50 | 3.143742e-47 |
| MsG0680030685.01 | MsG0880045582.01 | 0.808669 | 2.764059e-50 | 1.589946e-47 |
| MsG0280007609.01 | MsG0880045582.01 | 0.850711 | 1.423475e-60 | 2.813255e-57 |
| MsG0280007764.01 | MsG0880045582.01 | 0.805044 | 1.613923e-49 | 8.452568e-47 |
| MsG0280007790.01 | MsG0880045582.01 | 0.823029 | 1.725702e-53 | 1.468919e-50 |
| MsG0280008286.01 | MsG0880045582.01 | 0.820129 | 8.075217e-53 | 6.335675e-50 |
| MsG0280008885.01 | MsG0880045582.01 | 0.824365 | 8.397197e-54 | 7.422221e-51 |
| MsG0280008907.01 | MsG0880045582.01 | 0.802336 | 5.889132e-49 | 2.877354e-46 |
| MsG0280010389.01 | MsG0880045582.01 | 0.836329 | 9.974732e-57 | 1.253097e-53 |
| MsG0780036235.01 | MsG0880045582.01 | 0.805136 | 1.543884e-49 | 8.105045e-47 |
| MsG0780037975.01 | MsG0880045582.01 | 0.817652 | 2.951370e-52 | 2.161921e-49 |
| MsG0780038495.01 | MsG0880045582.01 | 0.802622 | 5.140362e-49 | 2.529851e-46 |
| MsG0780038837.01 | MsG0880045582.01 | 0.807318 | 5.359870e-50 | 2.976148e-47 |
| MsG0780038937.01 | MsG0880045582.01 | 0.814850 | 1.249044e-51 | 8.474389e-49 |
| MsG0780039570.01 | MsG0880045582.01 | 0.841296 | 5.179430e-58 | 7.575997e-55 |
| MsG0780039950.01 | MsG0880045582.01 | 0.804041 | 2.613458e-49 | 1.333855e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045582.01.T01 | MTR_8g074530 | 75.000 | 216 | 3 | 2 | 1 | 170 | 95 | 305 | 7.69e-106 | 305 |
| MsG0880045582.01.T01 | MTR_5g023290 | 49.315 | 219 | 62 | 4 | 1 | 170 | 91 | 309 | 3.72e-61 | 192 |
| MsG0880045582.01.T01 | MTR_8g074510 | 36.574 | 216 | 84 | 4 | 1 | 169 | 78 | 287 | 2.13e-32 | 117 |
| MsG0880045582.01.T01 | MTR_8g074450 | 37.037 | 216 | 83 | 4 | 1 | 169 | 80 | 289 | 4.04e-31 | 114 |
| MsG0880045582.01.T01 | MTR_8g074420 | 37.500 | 216 | 82 | 4 | 1 | 169 | 80 | 289 | 1.23e-30 | 112 |
| MsG0880045582.01.T01 | MTR_5g023370 | 35.648 | 216 | 80 | 5 | 1 | 169 | 81 | 284 | 5.44e-26 | 100 |
| MsG0880045582.01.T01 | MTR_5g023520 | 33.953 | 215 | 86 | 3 | 1 | 169 | 80 | 284 | 1.10e-24 | 97.1 |
| MsG0880045582.01.T01 | MTR_5g023350 | 34.722 | 216 | 82 | 5 | 1 | 169 | 81 | 284 | 1.61e-24 | 96.7 |
| MsG0880045582.01.T01 | MTR_5g023390 | 34.259 | 216 | 83 | 5 | 1 | 169 | 81 | 284 | 3.81e-24 | 95.5 |
| MsG0880045582.01.T01 | MTR_5g023340 | 35.349 | 215 | 82 | 5 | 1 | 169 | 81 | 284 | 6.36e-24 | 95.1 |
| MsG0880045582.01.T01 | MTR_5g023580 | 34.112 | 214 | 86 | 4 | 1 | 167 | 81 | 286 | 2.29e-22 | 92.0 |
| MsG0880045582.01.T01 | MTR_5g023550 | 33.796 | 216 | 84 | 5 | 1 | 169 | 80 | 283 | 2.50e-22 | 90.9 |
| MsG0880045582.01.T01 | MTR_5g023320 | 34.419 | 215 | 81 | 5 | 1 | 169 | 82 | 282 | 3.82e-22 | 90.5 |
| MsG0880045582.01.T01 | MTR_5g023600 | 34.259 | 216 | 83 | 5 | 1 | 169 | 81 | 284 | 4.97e-22 | 90.1 |
| MsG0880045582.01.T01 | MTR_5g023530 | 31.944 | 216 | 89 | 4 | 1 | 169 | 81 | 285 | 4.31e-20 | 84.7 |
| MsG0880045582.01.T01 | MTR_5g023470 | 31.481 | 216 | 90 | 4 | 1 | 169 | 81 | 285 | 1.66e-19 | 83.2 |
| MsG0880045582.01.T01 | MTR_4g070530 | 31.193 | 218 | 92 | 7 | 1 | 169 | 87 | 295 | 1.92e-16 | 75.1 |
| MsG0880045582.01.T01 | MTR_5g023460 | 32.487 | 197 | 70 | 5 | 20 | 169 | 11 | 191 | 3.49e-16 | 72.8 |
| MsG0880045582.01.T01 | MTR_4g070590 | 31.628 | 215 | 97 | 6 | 1 | 169 | 90 | 300 | 1.26e-15 | 72.8 |
| MsG0880045582.01.T01 | MTR_1g037820 | 31.667 | 180 | 104 | 5 | 9 | 169 | 46 | 225 | 1.15e-14 | 69.3 |
| MsG0880045582.01.T01 | MTR_4g070540 | 28.638 | 213 | 100 | 5 | 1 | 167 | 87 | 293 | 1.98e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045582.01.T01 | AT4G35210 | 29.592 | 196 | 91 | 6 | 1 | 167 | 73 | 250 | 3.13e-13 | 65.9 |
| MsG0880045582.01.T01 | AT4G35710 | 29.954 | 217 | 89 | 6 | 1 | 169 | 81 | 282 | 5.12e-13 | 65.5 |
| MsG0880045582.01.T01 | AT4G35200 | 30.151 | 199 | 89 | 6 | 1 | 167 | 73 | 253 | 2.15e-12 | 63.5 |
Find 21 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAGTAGTTTGATGATTA+TGG | 0.216552 | 8:+61329934 | MsG0880045582.01.T01:CDS |
| GCTATTGAAGGAATTGAAAA+TGG | 0.219192 | 8:+61330028 | MsG0880045582.01.T01:CDS |
| TGAGATCAAAGGTTAATAAA+TGG | 0.320655 | 8:+61329822 | MsG0880045582.01.T01:intron |
| ACATGGAAGGTTAGAAGCTT+TGG | 0.383618 | 8:+61330000 | MsG0880045582.01.T01:CDS |
| AGCTTCAATCTGTTCTTAGA+AGG | 0.390838 | 8:+61329560 | MsG0880045582.01.T01:CDS |
| ATAAATGGTCATTAGTTTCA+AGG | 0.411447 | 8:+61329837 | MsG0880045582.01.T01:CDS |
| AAAACCATGTTGCTGAATAT+TGG | 0.428191 | 8:+61329602 | MsG0880045582.01.T01:CDS |
| TTGATGCAGAAGGGTGTGTT+TGG | 0.432982 | 8:+61329860 | MsG0880045582.01.T01:CDS |
| AAAAGGTCTAAGAATCTTAG+TGG | 0.463444 | 8:-61329490 | None:intergenic |
| GCTTTGGTGGTGGCTATTGA+AGG | 0.475197 | 8:+61330016 | MsG0880045582.01.T01:CDS |
| CTGAATATTGGTGTTTGAGA+AGG | 0.492295 | 8:+61329614 | MsG0880045582.01.T01:CDS |
| AAATGAGAATATTAATGAGT+TGG | 0.492996 | 8:+61329895 | MsG0880045582.01.T01:CDS |
| AGTTTCAAGGTTGATGCAGA+AGG | 0.510581 | 8:+61329850 | MsG0880045582.01.T01:CDS |
| TGGAAGGTTAGAAGCTTTGG+TGG | 0.524132 | 8:+61330003 | MsG0880045582.01.T01:CDS |
| TTTGAGAAGGAAAATGAGAA+AGG | 0.532765 | 8:+61329627 | MsG0880045582.01.T01:CDS |
| GTTTCAAGGTTGATGCAGAA+GGG | 0.580414 | 8:+61329851 | MsG0880045582.01.T01:CDS |
| AGATTCAATCTGCACATGGA+AGG | 0.602686 | 8:+61329987 | MsG0880045582.01.T01:CDS |
| AAGGTTAGAAGCTTTGGTGG+TGG | 0.603606 | 8:+61330006 | MsG0880045582.01.T01:CDS |
| AACACCAATATTCAGCAACA+TGG | 0.620970 | 8:-61329606 | None:intergenic |
| GAGAAGATTCAATCTGCACA+TGG | 0.651774 | 8:+61329983 | MsG0880045582.01.T01:CDS |
| GAATTTGAGTAAAGATGCTG+AGG | 0.685171 | 8:+61329958 | MsG0880045582.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAGAATATTAATGAGT+TGG | + | Chr8:61329895-61329914 | MsG0880045582.01.T01:CDS | 20.0% |
| !!! | TTTTGTTGAAACAAATTGAT+GGG | + | Chr8:61329668-61329687 | MsG0880045582.01.T01:CDS | 20.0% |
| ! | TGAGATCAAAGGTTAATAAA+TGG | + | Chr8:61329822-61329841 | MsG0880045582.01.T01:intron | 25.0% |
| ! | TTAACCTTTGATCTCAAAAT+TGG | - | Chr8:61329818-61329837 | None:intergenic | 25.0% |
| !! | AGTTAGTAGTTTGATGATTA+TGG | + | Chr8:61329934-61329953 | MsG0880045582.01.T01:CDS | 25.0% |
| !! | ATAAATGGTCATTAGTTTCA+AGG | + | Chr8:61329837-61329856 | MsG0880045582.01.T01:CDS | 25.0% |
| !! | CTTTTGTTGAAACAAATTGA+TGG | + | Chr8:61329667-61329686 | MsG0880045582.01.T01:CDS | 25.0% |
| !!! | TTGGATCATCATTTTTTCAT+TGG | + | Chr8:61329695-61329714 | MsG0880045582.01.T01:intron | 25.0% |
| AAAACCATGTTGCTGAATAT+TGG | + | Chr8:61329602-61329621 | MsG0880045582.01.T01:CDS | 30.0% | |
| AAAAGGTCTAAGAATCTTAG+TGG | - | Chr8:61329493-61329512 | None:intergenic | 30.0% | |
| GCTATTGAAGGAATTGAAAA+TGG | + | Chr8:61330028-61330047 | MsG0880045582.01.T01:CDS | 30.0% | |
| GTTCTTAGAAGGAGAAAAAT+TGG | + | Chr8:61329571-61329590 | MsG0880045582.01.T01:CDS | 30.0% | |
| TTTGAGAAGGAAAATGAGAA+AGG | + | Chr8:61329627-61329646 | MsG0880045582.01.T01:CDS | 30.0% | |
| ! | AAACAAATTGATGGGTCAAT+TGG | + | Chr8:61329676-61329695 | MsG0880045582.01.T01:intron | 30.0% |
| ! | AAGGAGAAAAATTGGTGATA+TGG | + | Chr8:61329579-61329598 | MsG0880045582.01.T01:CDS | 30.0% |
| ! | GCACTTTTACAATTGAACAA+AGG | - | Chr8:61329734-61329753 | None:intergenic | 30.0% |
| !! | GAGTTGGAAAAAGTTGATTT+TGG | + | Chr8:61329911-61329930 | MsG0880045582.01.T01:CDS | 30.0% |
| !! | GATGATGTTTTGTTCATGAA+AGG | + | Chr8:61329526-61329545 | MsG0880045582.01.T01:CDS | 30.0% |
| !!! | TTCACCAATTTTGAGATCAA+AGG | + | Chr8:61329811-61329830 | MsG0880045582.01.T01:intron | 30.0% |
| AACACCAATATTCAGCAACA+TGG | - | Chr8:61329609-61329628 | None:intergenic | 35.0% | |
| AGCTTCAATCTGTTCTTAGA+AGG | + | Chr8:61329560-61329579 | MsG0880045582.01.T01:CDS | 35.0% | |
| GAATTTGAGTAAAGATGCTG+AGG | + | Chr8:61329958-61329977 | MsG0880045582.01.T01:CDS | 35.0% | |
| ! | CTGAATATTGGTGTTTGAGA+AGG | + | Chr8:61329614-61329633 | MsG0880045582.01.T01:CDS | 35.0% |
| !!! | CATCTCTTGTTTTGCTCAAA+AGG | - | Chr8:61329510-61329529 | None:intergenic | 35.0% |
| ACATGGAAGGTTAGAAGCTT+TGG | + | Chr8:61330000-61330019 | MsG0880045582.01.T01:CDS | 40.0% | |
| AGATTCAATCTGCACATGGA+AGG | + | Chr8:61329987-61330006 | MsG0880045582.01.T01:CDS | 40.0% | |
| GAGAAGATTCAATCTGCACA+TGG | + | Chr8:61329983-61330002 | MsG0880045582.01.T01:CDS | 40.0% | |
| !! | AGTTTCAAGGTTGATGCAGA+AGG | + | Chr8:61329850-61329869 | MsG0880045582.01.T01:CDS | 40.0% |
| !! | GTTTCAAGGTTGATGCAGAA+GGG | + | Chr8:61329851-61329870 | MsG0880045582.01.T01:CDS | 40.0% |
| ! | AAGGTTAGAAGCTTTGGTGG+TGG | + | Chr8:61330006-61330025 | MsG0880045582.01.T01:CDS | 45.0% |
| ! | TGGAAGGTTAGAAGCTTTGG+TGG | + | Chr8:61330003-61330022 | MsG0880045582.01.T01:CDS | 45.0% |
| ! | TTGATGCAGAAGGGTGTGTT+TGG | + | Chr8:61329860-61329879 | MsG0880045582.01.T01:CDS | 45.0% |
| !! | GCTTTGGTGGTGGCTATTGA+AGG | + | Chr8:61330016-61330035 | MsG0880045582.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 61329469 | 61330117 | 61329469 | ID=MsG0880045582.01;Name=MsG0880045582.01 |
| Chr8 | mRNA | 61329469 | 61330117 | 61329469 | ID=MsG0880045582.01.T01;Parent=MsG0880045582.01;Name=MsG0880045582.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|170 |
| Chr8 | exon | 61329469 | 61329689 | 61329469 | ID=MsG0880045582.01.T01:exon:12638;Parent=MsG0880045582.01.T01 |
| Chr8 | exon | 61329826 | 61330117 | 61329826 | ID=MsG0880045582.01.T01:exon:12639;Parent=MsG0880045582.01.T01 |
| Chr8 | CDS | 61329469 | 61329689 | 61329469 | ID=MsG0880045582.01.T01:cds;Parent=MsG0880045582.01.T01 |
| Chr8 | CDS | 61329826 | 61330117 | 61329826 | ID=MsG0880045582.01.T01:cds;Parent=MsG0880045582.01.T01 |
| Gene Sequence |
| Protein sequence |
