AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017680.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017680.01.T01 MTR_3g110260 65.019 263 2 2 1 218 1 218 5.73e-112 322
MsG0380017680.01.T01 MTR_8g061040 57.377 122 52 0 97 218 125 246 2.99e-52 174
MsG0380017680.01.T01 MTR_8g014075 52.756 127 60 0 92 218 109 235 3.79e-40 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017680.01.T01 AT3G18380 56.934 137 53 1 97 233 136 266 4.84e-53 176
MsG0380017680.01.T01 AT3G18380 56.934 137 53 1 97 233 139 269 5.81e-53 176
MsG0380017680.01.T01 AT3G18380 60.656 122 48 0 97 218 139 260 1.08e-52 175
MsG0380017680.01.T01 AT1G15215 42.453 212 105 2 8 219 51 245 2.79e-48 161
MsG0380017680.01.T01 AT1G15215 42.180 211 105 2 8 218 51 244 1.19e-47 159
MsG0380017680.01.T01 AT1G15215 42.180 211 105 2 8 218 51 244 1.39e-47 159

Find 55 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTATCCTAACAACGTTTA+AGG 0.151989 3:+99489114 None:intergenic
GAACATAGTCTCCAACTTTC+AGG 0.226239 3:+99487494 None:intergenic
GACTCCCGACCTAATTAAAA+AGG 0.229909 3:+99486966 None:intergenic
AAATTAGAAGGTGGGTCTTT+TGG 0.246157 3:-99486932 MsG0380017680.01.T01:three_prime_UTR
ATGTTAAACTGTATTGATTA+TGG 0.266595 3:-99488940 MsG0380017680.01.T01:intron
ACATTACCTTAAACGTTGTT+AGG 0.278622 3:-99489120 MsG0380017680.01.T01:CDS
CGAAAGGAACTGAGCGTTCC+CGG 0.320535 3:+99487536 None:intergenic
AGAGTCAGATTTGTTGGGTT+TGG 0.339869 3:-99487598 MsG0380017680.01.T01:CDS
AGTTTGCAGTTACCTGGATA+TGG 0.343452 3:-99487072 MsG0380017680.01.T01:CDS
AGACTATGTTCTGTGCTTCC+AGG 0.376950 3:-99487482 MsG0380017680.01.T01:intron
AAAAGTACCTCAAAATGAAT+TGG 0.377374 3:-99489176 MsG0380017680.01.T01:CDS
GGATATCATGCATTCTCCTT+TGG 0.380382 3:+99487330 None:intergenic
TTAAACGTTGTTAGGATAGT+TGG 0.398334 3:-99489112 MsG0380017680.01.T01:CDS
GAAGTCAGAGTCAGATTTGT+TGG 0.405823 3:-99487604 MsG0380017680.01.T01:CDS
AAATGTGACACCTGCAACCT+CGG 0.422569 3:+99487309 None:intergenic
GTCATGTATATCTAAGATCT+TGG 0.438432 3:+99487136 None:intergenic
GTAGGAAGGTACCTCAGAAT+TGG 0.440658 3:+99489622 None:intergenic
CAATGTGCGTAGAAATTAGA+AGG 0.441299 3:-99486944 MsG0380017680.01.T01:three_prime_UTR
GTTTGATTCTTGCCATATCC+AGG 0.442663 3:+99487060 None:intergenic
TCCAACAGTTTGCAGTTACC+TGG 0.454630 3:-99487078 MsG0380017680.01.T01:CDS
TTCCAACTCTGATGAGTCTC+GGG 0.471097 3:+99488696 None:intergenic
AAGTCAGAGTCAGATTTGTT+GGG 0.473120 3:-99487603 MsG0380017680.01.T01:CDS
GCACACAGATTTCTTAGCAC+AGG 0.502053 3:-99487720 MsG0380017680.01.T01:CDS
CACACAGATTTCTTAGCACA+GGG 0.505636 3:-99487719 MsG0380017680.01.T01:CDS
TCCAGGTAACTGCAAACTGT+TGG 0.508034 3:+99487077 None:intergenic
ATTCCAACTCTGATGAGTCT+CGG 0.521550 3:+99488695 None:intergenic
CTCAGTTCCTTTCGAGAACA+CGG 0.527058 3:-99487527 MsG0380017680.01.T01:CDS
TATTTCTTTGACGTTCCAGC+TGG 0.527153 3:-99487111 MsG0380017680.01.T01:CDS
GTCTGACCTTCCTTGCATTG+AGG 0.531906 3:+99489148 None:intergenic
ATTTGTTGGGTTTGGAGCTG+AGG 0.536262 3:-99487590 MsG0380017680.01.T01:CDS
TGCATGATATCCGAGGTTGC+AGG 0.537901 3:-99487319 MsG0380017680.01.T01:CDS
TTGGAAAGCTACTTACCAGC+TGG 0.543787 3:+99487096 None:intergenic
GCATATGTGCTCACCATGCT+TGG 0.545702 3:+99488650 None:intergenic
CACCCGAGACTCATCAGAGT+TGG 0.547609 3:-99488698 MsG0380017680.01.T01:CDS
TTCTGGATTCACCAATTCTG+AGG 0.559706 3:-99489633 MsG0380017680.01.T01:intron
GAGTGTTCCAACCTGAAAGT+TGG 0.564740 3:-99487505 MsG0380017680.01.T01:CDS
ATAGTCTCCAACTTTCAGGT+TGG 0.570305 3:+99487498 None:intergenic
AACAACGTTTAAGGTAATGT+AGG 0.574909 3:+99489123 None:intergenic
TCTAGGAAAGAGTTCGCTTG+AGG 0.579327 3:-99487174 MsG0380017680.01.T01:intron
ATTGGTTTCTCCTCAATGCA+AGG 0.583252 3:-99489158 MsG0380017680.01.T01:CDS
GAACACTCCGTGTTCTCGAA+AGG 0.592495 3:+99487520 None:intergenic
CTCACATTGTAGAGATCCAA+AGG 0.594628 3:-99487346 MsG0380017680.01.T01:CDS
TGGAGCTGAGGAAGATGAGT+GGG 0.595934 3:-99487578 MsG0380017680.01.T01:CDS
GATCTTCGAAAGACCAAGCA+TGG 0.602304 3:-99488663 MsG0380017680.01.T01:intron
GTGCGTAGAAATTAGAAGGT+GGG 0.608404 3:-99486940 MsG0380017680.01.T01:three_prime_UTR
GTTTCTCCTCAATGCAAGGA+AGG 0.620933 3:-99489154 MsG0380017680.01.T01:CDS
GAAAAGAGTTGAGTTGACGA+TGG 0.642726 3:-99489687 MsG0380017680.01.T01:exon
TGTGCGTAGAAATTAGAAGG+TGG 0.648681 3:-99486941 MsG0380017680.01.T01:three_prime_UTR
GATCACGACAACAACGAGGT+GGG 0.662437 3:-99487275 MsG0380017680.01.T01:intron
TGATCACGACAACAACGAGG+TGG 0.664918 3:-99487276 MsG0380017680.01.T01:CDS
ATATCTAAGATCTTGGTCTG+TGG 0.670538 3:+99487143 None:intergenic
TTGGAGCTGAGGAAGATGAG+TGG 0.671942 3:-99487579 MsG0380017680.01.T01:CDS
AGGAGAATGCATGATATCCG+AGG 0.689625 3:-99487326 MsG0380017680.01.T01:CDS
ACACAGATTTCTTAGCACAG+GGG 0.750555 3:-99487718 MsG0380017680.01.T01:CDS
ATATGATCACGACAACAACG+AGG 0.764532 3:-99487279 MsG0380017680.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTCCTTTATTTTTAT+GGG - Chr3:99487331-99487350 MsG0380017680.01.T01:CDS 10.0%
!!! TTAATTTTCCTTTATTTTTA+TGG - Chr3:99487330-99487349 MsG0380017680.01.T01:CDS 10.0%
!! ATATAATTGTAAAAACTTAC+AGG + Chr3:99488886-99488905 None:intergenic 15.0%
!! ATATATACAACTTAAATGAA+TGG + Chr3:99488575-99488594 None:intergenic 15.0%
!! TAAAAAATAACAATTTAGTG+TGG + Chr3:99488078-99488097 None:intergenic 15.0%
!! TAAAATTCCCATAAAAATAA+AGG + Chr3:99487341-99487360 None:intergenic 15.0%
!! TCTAACTAAATAAAAAGTAA+AGG + Chr3:99487766-99487785 None:intergenic 15.0%
!! TTATGGTTTATAGTTAAAAT+TGG + Chr3:99488629-99488648 None:intergenic 15.0%
!!! TTATTGTTATAGTATTTTTG+TGG - Chr3:99488294-99488313 MsG0380017680.01.T01:intron 15.0%
!!! TTTATTTTTATGGGAATTTT+AGG - Chr3:99487340-99487359 MsG0380017680.01.T01:CDS 15.0%
!! AAATGTTTAATGCATAATTG+AGG + Chr3:99488211-99488230 None:intergenic 20.0%
!! AGTTGTATATATGTATATGT+TGG - Chr3:99488583-99488602 MsG0380017680.01.T01:intron 20.0%
!! ATTATAAATCACACATGAAA+TGG + Chr3:99489357-99489376 None:intergenic 20.0%
!! CTGAAATGAAATAAGATTAA+AGG + Chr3:99487030-99487049 None:intergenic 20.0%
!! TGAAATAAGATTAAAGGTAA+CGG + Chr3:99487024-99487043 None:intergenic 20.0%
!!! AACTTTTTCACATCTATAAT+AGG - Chr3:99488358-99488377 MsG0380017680.01.T01:intron 20.0%
!!! AATTTTTAGCATGTATGATA+CGG + Chr3:99488451-99488470 None:intergenic 20.0%
!!! ATGTTAAACTGTATTGATTA+TGG - Chr3:99487636-99487655 MsG0380017680.01.T01:intron 20.0%
!!! GTTTTCTTTTTGTTTATTCT+AGG - Chr3:99489385-99489404 MsG0380017680.01.T01:intron 20.0%
!!! TAAATTTTAATGTCACTGAA+AGG - Chr3:99488005-99488024 MsG0380017680.01.T01:intron 20.0%
!!! TAATTAAAAGTGCATTTCAA+AGG + Chr3:99487313-99487332 None:intergenic 20.0%
! AAGATTCTTTGACTAAAATC+TGG - Chr3:99488540-99488559 MsG0380017680.01.T01:intron 25.0%
! AGAAAATGGAAAAATTGCTA+AGG - Chr3:99487054-99487073 MsG0380017680.01.T01:CDS 25.0%
! AGAGAGTAAAAGAAAAAAGT+AGG + Chr3:99486975-99486994 None:intergenic 25.0%
! AGTAAAAGAAAAAAGTAGGA+AGG + Chr3:99486971-99486990 None:intergenic 25.0%
! ATGAAGCTATAAACAATCTA+TGG + Chr3:99488130-99488149 None:intergenic 25.0%
! ATGTAATTTACTTCAGAATG+CGG - Chr3:99487586-99487605 MsG0380017680.01.T01:CDS 25.0%
! CCATAAAACAGATAGTATAT+AGG - Chr3:99488643-99488662 MsG0380017680.01.T01:intron 25.0%
! GAAAATGGAAAAATTGCTAA+GGG - Chr3:99487055-99487074 MsG0380017680.01.T01:CDS 25.0%
! GTAGTATTCAGTTAATTATC+TGG - Chr3:99488394-99488413 MsG0380017680.01.T01:intron 25.0%
! TACAATTTGTCTAAGTCTAA+AGG - Chr3:99488801-99488820 MsG0380017680.01.T01:intron 25.0%
! TCAACATAAAAAATTCAGTC+CGG - Chr3:99489021-99489040 MsG0380017680.01.T01:intron 25.0%
! TTCATTTCAGATTGAGAAAA+TGG - Chr3:99487040-99487059 MsG0380017680.01.T01:exon 25.0%
!! CCTATATACTATCTGTTTTA+TGG + Chr3:99488646-99488665 None:intergenic 25.0%
!!! AAAAGTACCTCAAAATGAAT+TGG - Chr3:99487400-99487419 MsG0380017680.01.T01:intron 25.0%
!!! AATGCTGTTTTTTTTAGCAA+TGG - Chr3:99489669-99489688 MsG0380017680.01.T01:CDS 25.0%
!!! AATTCATTTTGAGGTACTTT+TGG + Chr3:99487401-99487420 None:intergenic 25.0%
!!! ATTTTTAGCATGTATGATAC+GGG + Chr3:99488450-99488469 None:intergenic 25.0%
!!! CAATTGACATTTTGACTATT+TGG - Chr3:99489541-99489560 MsG0380017680.01.T01:intron 25.0%
!!! GTAAGAGTTTTGAAAATCAT+TGG + Chr3:99488684-99488703 None:intergenic 25.0%
!!! TAGTTTTTGGTAAAAATCGA+GGG + Chr3:99487105-99487124 None:intergenic 25.0%
AAAATCTAGTACACCCTATA+AGG + Chr3:99488923-99488942 None:intergenic 30.0%
AAATCATTGGAGGAAGAAAA+TGG + Chr3:99488671-99488690 None:intergenic 30.0%
AAATCTAGTACACCCTATAA+GGG + Chr3:99488922-99488941 None:intergenic 30.0%
AACTATCCTAACAACGTTTA+AGG + Chr3:99487465-99487484 None:intergenic 30.0%
AAGTAAAGGAAAACAGAAAG+TGG + Chr3:99487752-99487771 None:intergenic 30.0%
ACATTACCTTAAACGTTGTT+AGG - Chr3:99487456-99487475 MsG0380017680.01.T01:intron 30.0%
ATATATGCAGAATTCACGAA+TGG + Chr3:99487976-99487995 None:intergenic 30.0%
CAACATAAAAAATTCAGTCC+GGG - Chr3:99489022-99489041 MsG0380017680.01.T01:intron 30.0%
CATACATGCTAAAAATTGTG+AGG - Chr3:99488454-99488473 MsG0380017680.01.T01:intron 30.0%
TAAACAGTTTCTCCTTTGTA+AGG - Chr3:99488950-99488969 MsG0380017680.01.T01:CDS 30.0%
TCCTGTGTATTTCAATGTTT+GGG - Chr3:99487519-99487538 MsG0380017680.01.T01:CDS 30.0%
TTAAACGTTGTTAGGATAGT+TGG - Chr3:99487464-99487483 MsG0380017680.01.T01:intron 30.0%
TTGGTGAATCCAGAAAAAAT+AGG + Chr3:99486938-99486957 None:intergenic 30.0%
! AACAACGTTTAAGGTAATGT+AGG + Chr3:99487456-99487475 None:intergenic 30.0%
! ATCATTGTTTCTTTGTTGGT+CGG - Chr3:99487156-99487175 MsG0380017680.01.T01:CDS 30.0%
! CTCAATCATTGTTTCTTTGT+TGG - Chr3:99487152-99487171 MsG0380017680.01.T01:CDS 30.0%
! CTTTTATAACTATACGTGGA+TGG - Chr3:99488515-99488534 MsG0380017680.01.T01:intron 30.0%
! GAAAACAGACTTGAAACTTT+TGG + Chr3:99487129-99487148 None:intergenic 30.0%
! GACAGTTTCAATGTGTTTTT+AGG - Chr3:99489177-99489196 MsG0380017680.01.T01:CDS 30.0%
! GTCATGTATATCTAAGATCT+TGG + Chr3:99489443-99489462 None:intergenic 30.0%
! TCGTCTTTTATAACTATACG+TGG - Chr3:99488511-99488530 MsG0380017680.01.T01:intron 30.0%
!!! AGAGTTTTGAAAATCATTGG+AGG + Chr3:99488681-99488700 None:intergenic 30.0%
!!! CTAGTTTTTGGTAAAAATCG+AGG + Chr3:99487106-99487125 None:intergenic 30.0%
!!! CTTCAATGCCATTTTTACTT+TGG - Chr3:99488100-99488119 MsG0380017680.01.T01:intron 30.0%
!!! GTTTTAAGAAAATGACACCA+AGG - Chr3:99487675-99487694 MsG0380017680.01.T01:intron 30.0%
!!! TGAAACTTTTGGCTAGTTTT+TGG + Chr3:99487118-99487137 None:intergenic 30.0%
!!! TTTCAATGTGTTTTTAGGAG+AGG - Chr3:99489182-99489201 MsG0380017680.01.T01:CDS 30.0%
AAACTTTGACCTAAATCACC+TGG + Chr3:99489115-99489134 None:intergenic 35.0%
AAAGGAGAAACTGTTTAAGC+TGG + Chr3:99488947-99488966 None:intergenic 35.0%
AATCTAGTACACCCTATAAG+GGG + Chr3:99488921-99488940 None:intergenic 35.0%
ACTCCCGACCTAATTAAAAA+GGG + Chr3:99489612-99489631 None:intergenic 35.0%
ATGGACCACCAAAGTAAAAA+TGG + Chr3:99488111-99488130 None:intergenic 35.0%
ATTTCAATGTTTGGGCCTTT+AGG - Chr3:99487527-99487546 MsG0380017680.01.T01:CDS 35.0%
CAATGTGCGTAGAAATTAGA+AGG - Chr3:99489632-99489651 MsG0380017680.01.T01:intron 35.0%
CAGTTAATTATCTGGTGTTC+TGG - Chr3:99488402-99488421 MsG0380017680.01.T01:intron 35.0%
CTCAAATATTTGCGAACACA+AGG + Chr3:99487794-99487813 None:intergenic 35.0%
GAAAAAATAGGTCTGTTACG+AGG + Chr3:99486926-99486945 None:intergenic 35.0%
GATGTCCTTTAACTGTTCTA+TGG + Chr3:99489143-99489162 None:intergenic 35.0%
GTCCTGTGTATTTCAATGTT+TGG - Chr3:99487518-99487537 MsG0380017680.01.T01:CDS 35.0%
TTCATAGCTTTCCCCTTATA+GGG - Chr3:99488907-99488926 MsG0380017680.01.T01:intron 35.0%
TTGCTAAGGGAATCATCAAA+AGG - Chr3:99487068-99487087 MsG0380017680.01.T01:CDS 35.0%
TTGTCTTGTAGCTTATCATC+TGG - Chr3:99487212-99487231 MsG0380017680.01.T01:intron 35.0%
TTTCAATGTTTGGGCCTTTA+GGG - Chr3:99487528-99487547 MsG0380017680.01.T01:CDS 35.0%
! AAATTAGAAGGTGGGTCTTT+TGG - Chr3:99489644-99489663 MsG0380017680.01.T01:CDS 35.0%
! AAGTCAGAGTCAGATTTGTT+GGG - Chr3:99488973-99488992 MsG0380017680.01.T01:CDS 35.0%
! ATATCTAAGATCTTGGTCTG+TGG + Chr3:99489436-99489455 None:intergenic 35.0%
! ATTTTCGACAATGACATCAG+TGG - Chr3:99488766-99488785 MsG0380017680.01.T01:intron 35.0%
! GGAGAAACCAATTCATTTTG+AGG + Chr3:99487410-99487429 None:intergenic 35.0%
! TGTGGATTAATATCAGCATG+TGG + Chr3:99488060-99488079 None:intergenic 35.0%
!! GGGAATTTTAGGTACATAGT+TGG - Chr3:99487351-99487370 MsG0380017680.01.T01:CDS 35.0%
!! TTCTCCCTCCCTTTTTAATT+AGG - Chr3:99489601-99489620 MsG0380017680.01.T01:intron 35.0%
!!! CAATGCCATTTTTACTTTGG+TGG - Chr3:99488103-99488122 MsG0380017680.01.T01:intron 35.0%
!!! CGTAACAGACCTATTTTTTC+TGG - Chr3:99486926-99486945 MsG0380017680.01.T01:three_prime_UTR 35.0%
!!! GGTGTTATTTCTCTGCATTT+TGG - Chr3:99489322-99489341 MsG0380017680.01.T01:intron 35.0%
!!! GTCTGAAATGAGTTTTTTGC+AGG - Chr3:99487849-99487868 MsG0380017680.01.T01:intron 35.0%
!!! TTGTGGAGACACATTTTTTG+TGG - Chr3:99488311-99488330 MsG0380017680.01.T01:intron 35.0%
AAGCAATGAGGGACTATGAA+AGG - Chr3:99487714-99487733 MsG0380017680.01.T01:CDS 40.0%
ACACAGATTTCTTAGCACAG+GGG - Chr3:99488858-99488877 MsG0380017680.01.T01:intron 40.0%
AGAAAATGACACCAAGGACA+AGG - Chr3:99487681-99487700 MsG0380017680.01.T01:intron 40.0%
AGTTTGCAGTTACCTGGATA+TGG - Chr3:99489504-99489523 MsG0380017680.01.T01:intron 40.0%
ATACGACACAGTGACATCAA+TGG + Chr3:99488255-99488274 None:intergenic 40.0%
ATATGATCACGACAACAACG+AGG - Chr3:99489297-99489316 MsG0380017680.01.T01:intron 40.0%
ATTCCAACTCTGATGAGTCT+CGG + Chr3:99487884-99487903 None:intergenic 40.0%
CACACAGATTTCTTAGCACA+GGG - Chr3:99488857-99488876 MsG0380017680.01.T01:intron 40.0%
CCGACCTAATTAAAAAGGGA+GGG + Chr3:99489608-99489627 None:intergenic 40.0%
CCTCACCATAGAACAGTTAA+AGG - Chr3:99489135-99489154 MsG0380017680.01.T01:CDS 40.0%
CCTTTAACTGTTCTATGGTG+AGG + Chr3:99489138-99489157 None:intergenic 40.0%
CTCACATTGTAGAGATCCAA+AGG - Chr3:99489230-99489249 MsG0380017680.01.T01:intron 40.0%
GAACATAGTCTCCAACTTTC+AGG + Chr3:99489085-99489104 None:intergenic 40.0%
GAAGTCAGAGTCAGATTTGT+TGG - Chr3:99488972-99488991 MsG0380017680.01.T01:CDS 40.0%
GACTCCCGACCTAATTAAAA+AGG + Chr3:99489613-99489632 None:intergenic 40.0%
GCCCAAACATTGAAATACAC+AGG + Chr3:99487523-99487542 None:intergenic 40.0%
GGATATCATGCATTCTCCTT+TGG + Chr3:99489249-99489268 None:intergenic 40.0%
GTGCGTAGAAATTAGAAGGT+GGG - Chr3:99489636-99489655 MsG0380017680.01.T01:CDS 40.0%
GTTCATAGCTTTCCCCTTAT+AGG - Chr3:99488906-99488925 MsG0380017680.01.T01:intron 40.0%
GTTTGATTCTTGCCATATCC+AGG + Chr3:99489519-99489538 None:intergenic 40.0%
TATTTCTTTGACGTTCCAGC+TGG - Chr3:99489465-99489484 MsG0380017680.01.T01:intron 40.0%
TGACTCTGACTTCCTTACAA+AGG + Chr3:99488965-99488984 None:intergenic 40.0%
TGTGCGTAGAAATTAGAAGG+TGG - Chr3:99489635-99489654 MsG0380017680.01.T01:CDS 40.0%
TTAAACCAGCACTTCTAGTG+AGG - Chr3:99487822-99487841 MsG0380017680.01.T01:intron 40.0%
TTCTGGATTCACCAATTCTG+AGG - Chr3:99486943-99486962 MsG0380017680.01.T01:three_prime_UTR 40.0%
! ATAGTCTCCAACTTTCAGGT+TGG + Chr3:99489081-99489100 None:intergenic 40.0%
! ATTGGTTTCTCCTCAATGCA+AGG - Chr3:99487418-99487437 MsG0380017680.01.T01:intron 40.0%
! CATATCTGAAGTGACCCTAA+AGG + Chr3:99487545-99487564 None:intergenic 40.0%
! GTTGGTGTGTTTCAAGTGAA+AGG - Chr3:99488601-99488620 MsG0380017680.01.T01:intron 40.0%
!! AGAGTCAGATTTGTTGGGTT+TGG - Chr3:99488978-99488997 MsG0380017680.01.T01:intron 40.0%
!! CCCTCCCTTTTTAATTAGGT+CGG - Chr3:99489605-99489624 MsG0380017680.01.T01:intron 40.0%
!! CCTCCCTTTTTAATTAGGTC+GGG - Chr3:99489606-99489625 MsG0380017680.01.T01:intron 40.0%
!! GAAAAGAGTTGAGTTGACGA+TGG - Chr3:99486889-99486908 MsG0380017680.01.T01:three_prime_UTR 40.0%
!! TAAGTCTAAAGGTTTGCTGC+AGG - Chr3:99488812-99488831 MsG0380017680.01.T01:intron 40.0%
AAATGTGACACCTGCAACCT+CGG + Chr3:99489270-99489289 None:intergenic 45.0%
AGACTATGTTCTGTGCTTCC+AGG - Chr3:99489094-99489113 MsG0380017680.01.T01:CDS 45.0%
AGGAGAATGCATGATATCCG+AGG - Chr3:99489250-99489269 MsG0380017680.01.T01:intron 45.0%
CACTGATCTCACTGTATTCC+TGG - Chr3:99488150-99488169 MsG0380017680.01.T01:intron 45.0%
CCCGACCTAATTAAAAAGGG+AGG + Chr3:99489609-99489628 None:intergenic 45.0%
CTCAGTTCCTTTCGAGAACA+CGG - Chr3:99489049-99489068 MsG0380017680.01.T01:intron 45.0%
CTGGGAAACCTGTCATCAAA+TGG - Chr3:99487240-99487259 MsG0380017680.01.T01:intron 45.0%
GAAGTGACTGGAAGCAATGA+GGG - Chr3:99487703-99487722 MsG0380017680.01.T01:intron 45.0%
GAGGGACTATGAAAGGATCA+TGG - Chr3:99487721-99487740 MsG0380017680.01.T01:CDS 45.0%
GAGTGTTCCAACCTGAAAGT+TGG - Chr3:99489071-99489090 MsG0380017680.01.T01:intron 45.0%
GATCTTCGAAAGACCAAGCA+TGG - Chr3:99487913-99487932 MsG0380017680.01.T01:intron 45.0%
GCACACAGATTTCTTAGCAC+AGG - Chr3:99488856-99488875 MsG0380017680.01.T01:intron 45.0%
GTTTCTCCTCAATGCAAGGA+AGG - Chr3:99487422-99487441 MsG0380017680.01.T01:intron 45.0%
TCCAACAGTTTGCAGTTACC+TGG - Chr3:99489498-99489517 MsG0380017680.01.T01:intron 45.0%
TCCAGGTAACTGCAAACTGT+TGG + Chr3:99489502-99489521 None:intergenic 45.0%
TCTAGGAAAGAGTTCGCTTG+AGG - Chr3:99489402-99489421 MsG0380017680.01.T01:intron 45.0%
TCTGTGCTTCCAGGTGATTT+AGG - Chr3:99489103-99489122 MsG0380017680.01.T01:CDS 45.0%
TTCCAACTCTGATGAGTCTC+GGG + Chr3:99487883-99487902 None:intergenic 45.0%
TTGCCTAGTCGTAGACATAC+AGG - Chr3:99488737-99488756 MsG0380017680.01.T01:intron 45.0%
TTGGAAAGCTACTTACCAGC+TGG + Chr3:99489483-99489502 None:intergenic 45.0%
! ACCTGAGTCCATTTGATGAC+AGG + Chr3:99487251-99487270 None:intergenic 45.0%
! ACCTGTCATCAAATGGACTC+AGG - Chr3:99487247-99487266 MsG0380017680.01.T01:intron 45.0%
! ATTTGTTGGGTTTGGAGCTG+AGG - Chr3:99488986-99489005 MsG0380017680.01.T01:intron 45.0%
! TGTCAAATCGAAAGCATGCC+AGG + Chr3:99488171-99488190 None:intergenic 45.0%
!! GAAGTGCTGGTTTAAGCAGT+TGG + Chr3:99487817-99487836 None:intergenic 45.0%
!! GAGGTACTTTTGGTGAGTCT+TGG + Chr3:99487391-99487410 None:intergenic 45.0%
!! GTAGGAAGGTACCTCAGAAT+TGG + Chr3:99486957-99486976 None:intergenic 45.0%
ACCAAGGACAAGGAAGTGAC+TGG - Chr3:99487691-99487710 MsG0380017680.01.T01:intron 50.0%
AGCTTATCATCTGGTCGTGC+TGG - Chr3:99487221-99487240 MsG0380017680.01.T01:intron 50.0%
GAACACTCCGTGTTCTCGAA+AGG + Chr3:99489059-99489078 None:intergenic 50.0%
GATCACGACAACAACGAGGT+GGG - Chr3:99489301-99489320 MsG0380017680.01.T01:intron 50.0%
GCATATGTGCTCACCATGCT+TGG + Chr3:99487929-99487948 None:intergenic 50.0%
GCTTATCATCTGGTCGTGCT+GGG - Chr3:99487222-99487241 MsG0380017680.01.T01:intron 50.0%
GGAAGTGACTGGAAGCAATG+AGG - Chr3:99487702-99487721 MsG0380017680.01.T01:intron 50.0%
GTCTGACCTTCCTTGCATTG+AGG + Chr3:99487431-99487450 None:intergenic 50.0%
GTGCCTGTATGTCTACGACT+AGG + Chr3:99488743-99488762 None:intergenic 50.0%
TCCAGTCACTTCCTTGTCCT+TGG + Chr3:99487695-99487714 None:intergenic 50.0%
TGATCACGACAACAACGAGG+TGG - Chr3:99489300-99489319 MsG0380017680.01.T01:intron 50.0%
TGCATGATATCCGAGGTTGC+AGG - Chr3:99489257-99489276 MsG0380017680.01.T01:intron 50.0%
TGGAGCTGAGGAAGATGAGT+GGG - Chr3:99488998-99489017 MsG0380017680.01.T01:intron 50.0%
TTGGAGCTGAGGAAGATGAG+TGG - Chr3:99488997-99489016 MsG0380017680.01.T01:intron 50.0%
! CTCAACCTCACTAGAAGTGC+TGG + Chr3:99487830-99487849 None:intergenic 50.0%
CACCCGAGACTCATCAGAGT+TGG - Chr3:99487878-99487897 MsG0380017680.01.T01:intron 55.0%
CGAAAGGAACTGAGCGTTCC+CGG + Chr3:99489043-99489062 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 99486859 99489739 99486859 ID=MsG0380017680.01;Name=MsG0380017680.01
Chr3 mRNA 99486859 99489739 99486859 ID=MsG0380017680.01.T01;Parent=MsG0380017680.01;Name=MsG0380017680.01.T01;_AED=0.33;_eAED=0.41;_QI=49|0.42|0.62|1|0.28|0.37|8|184|268
Chr3 exon 99486859 99487191 99486859 ID=MsG0380017680.01.T01:exon:2691;Parent=MsG0380017680.01.T01
Chr3 exon 99487276 99487399 99487276 ID=MsG0380017680.01.T01:exon:2690;Parent=MsG0380017680.01.T01
Chr3 exon 99487483 99487626 99487483 ID=MsG0380017680.01.T01:exon:2689;Parent=MsG0380017680.01.T01
Chr3 exon 99487713 99487764 99487713 ID=MsG0380017680.01.T01:exon:2688;Parent=MsG0380017680.01.T01
Chr3 exon 99488664 99488727 99488664 ID=MsG0380017680.01.T01:exon:2687;Parent=MsG0380017680.01.T01
Chr3 exon 99488941 99488996 99488941 ID=MsG0380017680.01.T01:exon:2686;Parent=MsG0380017680.01.T01
Chr3 exon 99489076 99489236 99489076 ID=MsG0380017680.01.T01:exon:2685;Parent=MsG0380017680.01.T01
Chr3 exon 99489634 99489739 99489634 ID=MsG0380017680.01.T01:exon:2684;Parent=MsG0380017680.01.T01
Chr3 five_prime_UTR 99489691 99489739 99489691 ID=MsG0380017680.01.T01:five_prime_utr;Parent=MsG0380017680.01.T01
Chr3 CDS 99489634 99489690 99489634 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99489076 99489236 99489076 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99488941 99488996 99488941 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99488664 99488727 99488664 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99487713 99487764 99487713 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99487483 99487626 99487483 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99487276 99487399 99487276 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 CDS 99487043 99487191 99487043 ID=MsG0380017680.01.T01:cds;Parent=MsG0380017680.01.T01
Chr3 three_prime_UTR 99486859 99487042 99486859 ID=MsG0380017680.01.T01:three_prime_utr;Parent=MsG0380017680.01.T01
Gene Sequence

>MsG0380017680.01.T01

ATGGATCGCTTGCGTCCTCGTAACAGACCTATTTTTTCTGGATTCACCAATTCTGAGGTACATAGTTGGTTTCAGACTAGACTCCAAGACTCACCAAAAGTACCTCAAAATGAATTGGTTTCTCCTCAATGCAAGGAAGGTCAGACTTCCTACATTACCTTAAACGTTGTTAGGATAGTTGGTGCTGTCTTCAAGCATTCTAATGATCACATTGTCCTAATGCGGCTTGTGAAACTTTATAATGTCAATTTGATGTTAAACTGTATTGATTATGGAGAAAACACCCGAGACTCATCAGAGTTGGAATTTGAAGCTAGATCTTCGAAAGACCAAGCATGGTACGATGTTGAGACATTTCTTGCACACAGATTTCTTAGCACAGGGGAACCTGAAGTCAGAGTCAGATTTGTTGGGTTTGGAGCTGAGGAAGATGAGTGGGTCAACATAAAAAATTCAGTCCGGGAACGCTCAGTTCCTTTCGAGAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTATGTTCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATTTTAATTCGATATGATCACGACAACAACGAGGTGGGAAAGAGTTCGCTTGAGGAGACTTTGCCACAGACCAAGATCTTAGATATACATGACATTATTTCTTTGACGTTCCAGCTGGTAAGTAGCTTTCCAACAGTTTGCAGTTACCTGGATATGGCAAGAATCAAACAGCAATTGACATTTTGA

Protein sequence

>MsG0380017680.01.T01

MDRLRPRNRPIFSGFTNSEVHSWFQTRLQDSPKVPQNELVSPQCKEGQTSYITLNVVRIVGAVFKHSNDHIVLMRLVKLYNVNLMLNCIDYGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNEVGKSSLEETLPQTKILDIHDIISLTFQLVSSFPTVCSYLDMARIKQQLTF*