AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016090.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016090.01.T01 MTR_3g083200 70.136 221 6 3 1 202 24 203 1.14e-98 285
MsG0380016090.01.T01 MTR_3g083200 68.750 208 14 4 1 202 24 186 9.42e-89 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016090.01.T01 AT2G04845 48.869 221 53 4 1 202 22 201 3.30e-59 185
MsG0380016090.01.T01 AT2G04845 49.038 208 59 3 1 202 22 188 6.46e-59 184
MsG0380016090.01.T01 AT2G04845 49.038 208 59 3 1 202 22 188 6.98e-59 184
MsG0380016090.01.T01 AT2G04845 52.459 183 40 3 1 177 22 163 8.31e-59 183
MsG0380016090.01.T01 AT2G04845 52.198 182 40 3 1 176 22 162 8.47e-58 181

Find 45 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATCCATTCATGATATT+TGG 0.076576 3:+79034551 None:intergenic
ACCAAGCATCTCCTCATTCT+TGG 0.266496 3:+79030680 None:intergenic
TTGGATAAAGACTTGCTTCT+TGG 0.270404 3:-79034420 MsG0380016090.01.T01:CDS
TGCATCCATTCATGATATTT+GGG 0.307846 3:+79034552 None:intergenic
CAAGGAAACTTTCATTCTCT+TGG 0.318845 3:-79034439 MsG0380016090.01.T01:CDS
GCCTTTGCTATTGAGAAGTT+GGG 0.345000 3:-79033282 MsG0380016090.01.T01:CDS
CAGACCCATGGAACAAGTTC+TGG 0.362415 3:-79033553 MsG0380016090.01.T01:CDS
ATTTCAACCTCTGCTATTTG+AGG 0.378004 3:+79034234 None:intergenic
CATAGCCGTGGCAAAGGACT+TGG 0.395075 3:-79033330 MsG0380016090.01.T01:CDS
TGAGGAGATGCTTGGTTTGA+TGG 0.406506 3:-79030673 MsG0380016090.01.T01:CDS
CTTCTTGGAACCTTCTCTCA+TGG 0.417969 3:-79034405 MsG0380016090.01.T01:intron
GGCCTTTGCTATTGAGAAGT+TGG 0.437922 3:-79033283 MsG0380016090.01.T01:CDS
ATACTCTTGTTCGAGAGAAA+GGG 0.455235 3:+79034494 None:intergenic
GATACTCTTGTTCGAGAGAA+AGG 0.456194 3:+79034493 None:intergenic
CTTGTTGAGATCACGTGACC+AGG 0.456827 3:+79034458 None:intergenic
AAGTTCTGGAAAACTTGTAT+TGG 0.464231 3:-79033539 MsG0380016090.01.T01:CDS
ATTTGTTTGACAGGTGACTT+TGG 0.470985 3:-79030721 MsG0380016090.01.T01:intron
GTCAAATTCTTACACTTGAA+AGG 0.486297 3:+79030494 None:intergenic
ACGTTCCCAAATATCATGAA+TGG 0.490153 3:-79034557 MsG0380016090.01.T01:CDS
CTAATGTCACAATCTTGTAT+TGG 0.503254 3:+79030534 None:intergenic
CTAGATATAAAAGCTTTCCC+CGG 0.510576 3:-79033455 MsG0380016090.01.T01:CDS
TTGTTCGAGAGAAAGGGGTT+CGG 0.511970 3:+79034500 None:intergenic
GCCAAGAATGAGGAGATGCT+TGG 0.528942 3:-79030681 MsG0380016090.01.T01:CDS
GCAGTGGCTTGAAGAAGAGA+AGG 0.540091 3:+79034525 None:intergenic
TCACAATCTTGTATTGGTAA+TGG 0.544490 3:+79030540 None:intergenic
AGTATCAGATGCAACTCTCC+TGG 0.549318 3:-79034476 MsG0380016090.01.T01:CDS
TGTTAGCATAGCCGTGGCAA+AGG 0.550626 3:-79033336 MsG0380016090.01.T01:intron
CCGCTATTTGCAGCTATGGT+TGG 0.553290 3:-79034291 MsG0380016090.01.T01:intron
TCATGATATTTGGGAACGTG+AGG 0.569678 3:+79034561 None:intergenic
TAGATATAAAAGCTTTCCCC+GGG 0.569859 3:-79033454 MsG0380016090.01.T01:intron
GAGGAGATGCTTGGTTTGAT+GGG 0.572308 3:-79030672 MsG0380016090.01.T01:CDS
CCTTTGCTATTGAGAAGTTG+GGG 0.572445 3:-79033281 MsG0380016090.01.T01:CDS
TAAACCATTCCACAGACCCA+TGG 0.582499 3:-79033565 MsG0380016090.01.T01:intron
AATAACACAAGCCAAGAATG+AGG 0.587170 3:-79030691 MsG0380016090.01.T01:CDS
AGAAAGGGGTTCGGAAGCAG+TGG 0.587837 3:+79034509 None:intergenic
CCTTTCCAAGTCCTTTGCCA+CGG 0.588992 3:+79033325 None:intergenic
TACTCTTGTTCGAGAGAAAG+GGG 0.600981 3:+79034495 None:intergenic
CCGTGGCAAAGGACTTGGAA+AGG 0.603951 3:-79033325 MsG0380016090.01.T01:CDS
CCCCAACTTCTCAATAGCAA+AGG 0.607006 3:+79033281 None:intergenic
CTGGTCACGTGATCTCAACA+AGG 0.618601 3:-79034457 MsG0380016090.01.T01:CDS
TTATGATAGCTGAACAAACC+AGG 0.634003 3:-79034212 MsG0380016090.01.T01:intron
CAGTGGCTTGAAGAAGAGAA+GGG 0.656481 3:+79034526 None:intergenic
CAATGATCCTCAAATAGCAG+AGG 0.657129 3:-79034241 MsG0380016090.01.T01:CDS
GTGGGGTTGACCATGAGAGA+AGG 0.659157 3:+79034395 None:intergenic
AAATACGCACATCAAGAACA+AGG 0.669535 3:+79030575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTAAATTATCTATTT+AGG + Chr3:79031923-79031942 None:intergenic 10.0%
!! TATTCTAAATTATCTATTTA+GGG + Chr3:79031922-79031941 None:intergenic 10.0%
!! TTTAAGAAATATGATAGAAT+AGG - Chr3:79032981-79033000 MsG0380016090.01.T01:intron 15.0%
!! TTTGAATAAAAATGACATAA+TGG + Chr3:79030937-79030956 None:intergenic 15.0%
!!! CTTTTTAAAATCAAACTTTT+CGG - Chr3:79033913-79033932 MsG0380016090.01.T01:intron 15.0%
!!! TTGAATATTTAAAATTGTGA+CGG + Chr3:79031427-79031446 None:intergenic 15.0%
!!! TTTTAAATTTAGAACATAGA+TGG + Chr3:79031546-79031565 None:intergenic 15.0%
!! AAATGCTCAAAATTTGTATT+TGG - Chr3:79031328-79031347 MsG0380016090.01.T01:intron 20.0%
!! ATATTCTCGATTATCTATTT+AGG + Chr3:79032085-79032104 None:intergenic 20.0%
!! ATGGTTAAAACAAAAACTTA+AGG + Chr3:79034143-79034162 None:intergenic 20.0%
!! ATGTTTCATAAACTACAAAA+AGG + Chr3:79032833-79032852 None:intergenic 20.0%
!! CTGAAAAATAGAAATTGAAT+GGG - Chr3:79032309-79032328 MsG0380016090.01.T01:intron 20.0%
!! TCTGAAAAATAGAAATTGAA+TGG - Chr3:79032308-79032327 MsG0380016090.01.T01:intron 20.0%
!! TGAAAAATAGAAATTGAATG+GGG - Chr3:79032310-79032329 MsG0380016090.01.T01:intron 20.0%
!! TGTTTCATAAACTACAAAAA+GGG + Chr3:79032832-79032851 None:intergenic 20.0%
!!! AAAACTTTTCAGGTTAAAAT+TGG - Chr3:79031785-79031804 MsG0380016090.01.T01:intron 20.0%
!!! AAAATATTCTTTTAGAACCA+TGG - Chr3:79033456-79033475 MsG0380016090.01.T01:CDS 20.0%
!!! CGAAAAGTTTGATTTTAAAA+AGG + Chr3:79033915-79033934 None:intergenic 20.0%
!!! TAATTTCAAATTTTCAACAG+AGG - Chr3:79033650-79033669 MsG0380016090.01.T01:intron 20.0%
!!! TGAAGTTACAGTTTTTTTAT+TGG - Chr3:79033376-79033395 MsG0380016090.01.T01:intron 20.0%
!!! TGTTATTGTAATTTTAACGA+AGG - Chr3:79033767-79033786 MsG0380016090.01.T01:intron 20.0%
!!! TTTCTATTTTTCAGATAAAC+AGG + Chr3:79032303-79032322 None:intergenic 20.0%
! AATCAATTCTATAAAAGCCA+TGG + Chr3:79033476-79033495 None:intergenic 25.0%
! AATTTGTATTTGGTCTCAAT+TGG - Chr3:79031338-79031357 MsG0380016090.01.T01:intron 25.0%
! ATATCTCAGATAAAAGTTAG+AGG - Chr3:79031161-79031180 MsG0380016090.01.T01:intron 25.0%
! ATGCTCTACTTGATTTATAA+AGG + Chr3:79031231-79031250 None:intergenic 25.0%
! ATTGATCAATTCAATGACTT+TGG + Chr3:79032761-79032780 None:intergenic 25.0%
! ATTGTCTTATGTATTAAGAC+AGG + Chr3:79032012-79032031 None:intergenic 25.0%
! GAATATAGAATCGAAATACA+AGG - Chr3:79032139-79032158 MsG0380016090.01.T01:intron 25.0%
! GATGAAAATTACTTTAGTAC+AGG - Chr3:79031205-79031224 MsG0380016090.01.T01:intron 25.0%
! GATTAAGGTAAATTGAAATC+TGG - Chr3:79033877-79033896 MsG0380016090.01.T01:intron 25.0%
! TAAGAGTTGTTAATTACTTG+AGG + Chr3:79033133-79033152 None:intergenic 25.0%
! TATAAATAGGAGAACACAAA+GGG + Chr3:79033088-79033107 None:intergenic 25.0%
! TGTCTTAATACATAAGACAA+AGG - Chr3:79032011-79032030 MsG0380016090.01.T01:intron 25.0%
! TGTCTTAATACATAAGACAA+TGG - Chr3:79032011-79032030 MsG0380016090.01.T01:intron 25.0%
! TTACTTCTTAATTTAATCGC+TGG - Chr3:79032564-79032583 MsG0380016090.01.T01:intron 25.0%
! TTTGTCTTATGTATTAAGAC+AGG + Chr3:79032176-79032195 None:intergenic 25.0%
!! GAACTTAGGATTTAGAATAA+TGG + Chr3:79033179-79033198 None:intergenic 25.0%
!! GTTTATTATGTTCTGAATGA+TGG + Chr3:79034162-79034181 None:intergenic 25.0%
!! TCTACTTGTTAAATTCTCTA+TGG - Chr3:79033230-79033249 MsG0380016090.01.T01:CDS 25.0%
!! TGAAAATTTTGTCCATCAAA+TGG + Chr3:79032645-79032664 None:intergenic 25.0%
!!! AAAGCCTTTAAAATGAAAGA+TGG + Chr3:79033331-79033350 None:intergenic 25.0%
!!! AAGTTAGAGGTGTTAAAAAT+AGG - Chr3:79031174-79031193 MsG0380016090.01.T01:intron 25.0%
!!! ACAGTGCTATTTGTATAAAT+AGG + Chr3:79033101-79033120 None:intergenic 25.0%
!!! ATCTAGAAGTCTTATGTTTT+GGG - Chr3:79031615-79031634 MsG0380016090.01.T01:intron 25.0%
!!! ATCTTTCATTTTAAAGGCTT+TGG - Chr3:79033330-79033349 MsG0380016090.01.T01:CDS 25.0%
!!! GCATATGTATACTTTTTAAC+TGG - Chr3:79031386-79031405 MsG0380016090.01.T01:intron 25.0%
!!! TGTCATCTCTAAAACATAAA+AGG - Chr3:79031305-79031324 MsG0380016090.01.T01:intron 25.0%
AAAAAAAGATAGAGAAGCAG+CGG + Chr3:79031857-79031876 None:intergenic 30.0%
AAACAAGGTTATCCATTTGA+TGG - Chr3:79032630-79032649 MsG0380016090.01.T01:intron 30.0%
AATCAATTCATATGAAGCCA+TGG + Chr3:79032881-79032900 None:intergenic 30.0%
ACCATTTATAATGTGTGTGA+AGG + Chr3:79032509-79032528 None:intergenic 30.0%
ACCTTCACACACATTATAAA+TGG - Chr3:79032505-79032524 MsG0380016090.01.T01:intron 30.0%
AGTTACAAGCTAAGTGATTA+AGG - Chr3:79033862-79033881 MsG0380016090.01.T01:intron 30.0%
ATAGTCAAAACAATTGAGAC+TGG + Chr3:79033817-79033836 None:intergenic 30.0%
CATCAACCTGTTTAAAAAAC+TGG - Chr3:79031826-79031845 MsG0380016090.01.T01:intron 30.0%
CTAATGTCACAATCTTGTAT+TGG + Chr3:79034509-79034528 None:intergenic 30.0%
CTCTTCATATTAAATGCATG+AGG - Chr3:79031878-79031897 MsG0380016090.01.T01:intron 30.0%
GAAGAATATTCTTTGAACCA+TGG - Chr3:79032861-79032880 MsG0380016090.01.T01:intron 30.0%
GAATATAGAGTCGAAATACA+AGG - Chr3:79031977-79031996 MsG0380016090.01.T01:intron 30.0%
GTATAAATAGGAGAACACAA+AGG + Chr3:79033089-79033108 None:intergenic 30.0%
GTCAAATTCTTACACTTGAA+AGG + Chr3:79034549-79034568 None:intergenic 30.0%
GTCATGATTGTAACTTATTG+AGG - Chr3:79031018-79031037 MsG0380016090.01.T01:intron 30.0%
GTGAAGGTTATTATAGAACT+TGG + Chr3:79032493-79032512 None:intergenic 30.0%
TAACAGTTTGTGAAATCAAC+AGG + Chr3:79033984-79034003 None:intergenic 30.0%
TAGAATATCACTTCTGATAC+TGG - Chr3:79032109-79032128 MsG0380016090.01.T01:intron 30.0%
TAGTCAAAACAATTGAGACT+GGG + Chr3:79033816-79033835 None:intergenic 30.0%
TGCATCCATTCATGATATTT+GGG + Chr3:79030491-79030510 None:intergenic 30.0%
TGTCTTTCTTTGTCTTTGTT+AGG - Chr3:79032924-79032943 MsG0380016090.01.T01:intron 30.0%
TTAAAATGAAAGATGGACAG+AGG + Chr3:79033324-79033343 None:intergenic 30.0%
TTGCATCCATTCATGATATT+TGG + Chr3:79030492-79030511 None:intergenic 30.0%
TTGTAAGTTGTTGTCAAACA+AGG - Chr3:79032615-79032634 MsG0380016090.01.T01:intron 30.0%
TTTCAGATAAACAGGTAGAA+AGG + Chr3:79032295-79032314 None:intergenic 30.0%
! AAGACAAAGGTACATTATAC+AGG - Chr3:79032188-79032207 MsG0380016090.01.T01:intron 30.0%
! ACATAGCAACATTTTCAAAG+AGG - Chr3:79033617-79033636 MsG0380016090.01.T01:intron 30.0%
! AGACAAAGGTACATTATACA+GGG - Chr3:79032189-79032208 MsG0380016090.01.T01:intron 30.0%
! AGAGTATTCTCTATTGTGAA+GGG + Chr3:79033032-79033051 None:intergenic 30.0%
! CTGTCCATCTTTCATTTTAA+AGG - Chr3:79033324-79033343 MsG0380016090.01.T01:CDS 30.0%
! TAGAGTATTCTCTATTGTGA+AGG + Chr3:79033033-79033052 None:intergenic 30.0%
! TCACAATCTTGTATTGGTAA+TGG + Chr3:79034503-79034522 None:intergenic 30.0%
! TCAGCAACTAGTTTATAAGT+AGG + Chr3:79030856-79030875 None:intergenic 30.0%
!! AAGTTCTGGAAAACTTGTAT+TGG - Chr3:79031501-79031520 MsG0380016090.01.T01:intron 30.0%
!! CATCTAGAAGTCTTATGTTT+TGG - Chr3:79031614-79031633 MsG0380016090.01.T01:intron 30.0%
!! TTGTTCCTAATTTGTTTGAC+AGG - Chr3:79034310-79034329 MsG0380016090.01.T01:intron 30.0%
!!! CAGTTTTTTAAACAGGTTGA+TGG + Chr3:79031828-79031847 None:intergenic 30.0%
AAATACGCACATCAAGAACA+AGG + Chr3:79034468-79034487 None:intergenic 35.0%
AACATTATTGACCTTCAACG+TGG + Chr3:79030667-79030686 None:intergenic 35.0%
AAGAAGAAAACCGCATATGA+CGG + Chr3:79034260-79034279 None:intergenic 35.0%
AAGACAATGGTACATTACAC+AGG - Chr3:79032024-79032043 MsG0380016090.01.T01:intron 35.0%
AATAACACAAGCCAAGAATG+AGG - Chr3:79034349-79034368 MsG0380016090.01.T01:intron 35.0%
ACAAGGAAACATGTGCATAA+CGG + Chr3:79032396-79032415 None:intergenic 35.0%
ACATTATTGACCTTCAACGT+GGG + Chr3:79030666-79030685 None:intergenic 35.0%
ACGCCTTCAATAAGAAATGT+TGG + Chr3:79030886-79030905 None:intergenic 35.0%
ACGTTCCCAAATATCATGAA+TGG - Chr3:79030483-79030502 MsG0380016090.01.T01:three_prime_UTR 35.0%
AGACAATGGTACATTACACA+GGG - Chr3:79032025-79032044 MsG0380016090.01.T01:intron 35.0%
AGACTTCTAGATGAAAAACC+CGG + Chr3:79031607-79031626 None:intergenic 35.0%
AGCGGTTATGGTTATGATTA+TGG + Chr3:79032370-79032389 None:intergenic 35.0%
AGTCACCTGTCAAACAAATT+AGG + Chr3:79034318-79034337 None:intergenic 35.0%
AGTGATCAAAAGTGAGATCA+AGG + Chr3:79031675-79031694 None:intergenic 35.0%
ATACAGGGAAATGCATGAAT+TGG - Chr3:79032204-79032223 MsG0380016090.01.T01:intron 35.0%
ATACTCTTGTTCGAGAGAAA+GGG + Chr3:79030549-79030568 None:intergenic 35.0%
ATGGTAGAATTAATCTCGAG+AGG - Chr3:79032524-79032543 MsG0380016090.01.T01:intron 35.0%
ATTTGTTTGACAGGTGACTT+TGG - Chr3:79034319-79034338 MsG0380016090.01.T01:intron 35.0%
CAAGGAAACTTTCATTCTCT+TGG - Chr3:79030601-79030620 MsG0380016090.01.T01:three_prime_UTR 35.0%
CATATCCAAGTAAAGCAAGT+TGG - Chr3:79031076-79031095 MsG0380016090.01.T01:intron 35.0%
CTAGATATAAAAGCTTTCCC+CGG - Chr3:79031585-79031604 MsG0380016090.01.T01:intron 35.0%
CTAGTTTATAAGTAGGTACC+TGG + Chr3:79030849-79030868 None:intergenic 35.0%
GAAGTAATGCTCATTTACCA+TGG + Chr3:79032551-79032570 None:intergenic 35.0%
GAGTATTCTCTATTGTGAAG+GGG + Chr3:79033031-79033050 None:intergenic 35.0%
GAGTTGTTAATTACTTGAGG+TGG + Chr3:79033130-79033149 None:intergenic 35.0%
GCTCCAACATTTCTTATTGA+AGG - Chr3:79030880-79030899 MsG0380016090.01.T01:intron 35.0%
GGATAAAGTGAGAAATTGTC+AGG + Chr3:79032457-79032476 None:intergenic 35.0%
GGTAGCATACACATTAAACA+AGG + Chr3:79032413-79032432 None:intergenic 35.0%
GTAAATGTAATCACATGCTC+CGG + Chr3:79030911-79030930 None:intergenic 35.0%
TAGAACATCACTTCTGATAC+TGG - Chr3:79031947-79031966 MsG0380016090.01.T01:intron 35.0%
TAGATATAAAAGCTTTCCCC+GGG - Chr3:79031586-79031605 MsG0380016090.01.T01:intron 35.0%
TATGCAAGCATATGAGACTA+AGG + Chr3:79031371-79031390 None:intergenic 35.0%
TCAGTATTGCATGTAGTTCA+AGG - Chr3:79032662-79032681 MsG0380016090.01.T01:intron 35.0%
TTAATGTGTATGCTACCCTA+AGG - Chr3:79032416-79032435 MsG0380016090.01.T01:intron 35.0%
TTATGATAGCTGAACAAACC+AGG - Chr3:79030828-79030847 MsG0380016090.01.T01:intron 35.0%
TTATTGAGGATGCATGTGTT+GGG - Chr3:79031032-79031051 MsG0380016090.01.T01:intron 35.0%
TTCTGTTCCATTCCATTCTT+GGG + Chr3:79032952-79032971 None:intergenic 35.0%
TTTCTGTTCCATTCCATTCT+TGG + Chr3:79032953-79032972 None:intergenic 35.0%
! ACAGTGTTCCTTCATTTTGA+AGG - Chr3:79032728-79032747 MsG0380016090.01.T01:intron 35.0%
! ATTTCAACCTCTGCTATTTG+AGG + Chr3:79030809-79030828 None:intergenic 35.0%
! CAACTTGCTTTACTTGGATA+TGG + Chr3:79031078-79031097 None:intergenic 35.0%
! TAAGTGCAAGTTGAACCTTA+GGG + Chr3:79032434-79032453 None:intergenic 35.0%
! TTGGATAAAGACTTGCTTCT+TGG - Chr3:79030620-79030639 MsG0380016090.01.T01:three_prime_UTR 35.0%
!! GAACTTGGCTTTTACAACTA+AGG + Chr3:79032478-79032497 None:intergenic 35.0%
!! TTCCTTCATTTTGAAGGATG+TGG - Chr3:79032734-79032753 MsG0380016090.01.T01:intron 35.0%
!! TTTTCCAGAACTTGTTCCAT+GGG + Chr3:79031494-79031513 None:intergenic 35.0%
!!! GACAGACCAGTTTTTTAAAC+AGG + Chr3:79031835-79031854 None:intergenic 35.0%
!!! GGAGTCTGTTTTGATAATGA+TGG - Chr3:79031736-79031755 MsG0380016090.01.T01:intron 35.0%
!!! TTTTTTTGTTAGCATAGCCG+TGG - Chr3:79031698-79031717 MsG0380016090.01.T01:intron 35.0%
AAACCACTTGAGAAGAGAGA+GGG + Chr3:79033531-79033550 None:intergenic 40.0%
AATCCACAAGCTATGTCAAC+AGG + Chr3:79033572-79033591 None:intergenic 40.0%
AATTAATCTCGAGAGGACCA+TGG - Chr3:79032531-79032550 MsG0380016090.01.T01:intron 40.0%
ACACAGGGAAATACATGAAC+TGG - Chr3:79032040-79032059 MsG0380016090.01.T01:intron 40.0%
ACATGTGCATAACGGTTTAG+CGG + Chr3:79032388-79032407 None:intergenic 40.0%
ACTTCTAGATGAAAAACCCG+GGG + Chr3:79031605-79031624 None:intergenic 40.0%
ACTTGAAGCAAGAGACTGTT+AGG + Chr3:79033201-79033220 None:intergenic 40.0%
CAAGAGACTGTTAGGAACTT+AGG + Chr3:79033193-79033212 None:intergenic 40.0%
CAATGATCCTCAAATAGCAG+AGG - Chr3:79030799-79030818 MsG0380016090.01.T01:intron 40.0%
CACAGGGAAATACATGAACT+GGG - Chr3:79032041-79032060 MsG0380016090.01.T01:intron 40.0%
CACTTCTGATACTGGATAAC+TGG - Chr3:79031955-79031974 MsG0380016090.01.T01:intron 40.0%
CATTATTGACCTTCAACGTG+GGG + Chr3:79030665-79030684 None:intergenic 40.0%
CTGGGTCAAAATGTAACACT+CGG - Chr3:79032059-79032078 MsG0380016090.01.T01:intron 40.0%
CTTATTGAGGATGCATGTGT+TGG - Chr3:79031031-79031050 MsG0380016090.01.T01:intron 40.0%
CTTTGTTAGGAACCCAAGAA+TGG - Chr3:79032937-79032956 MsG0380016090.01.T01:intron 40.0%
GACCACATCCTTCAAAATGA+AGG + Chr3:79032739-79032758 None:intergenic 40.0%
GACTTCTAGATGAAAAACCC+GGG + Chr3:79031606-79031625 None:intergenic 40.0%
GATACTCTTGTTCGAGAGAA+AGG + Chr3:79030550-79030569 None:intergenic 40.0%
GGCACATATGCATTGTATCT+AGG - Chr3:79032683-79032702 MsG0380016090.01.T01:intron 40.0%
TAACAGTCTCTTGCTTCAAG+TGG - Chr3:79033200-79033219 MsG0380016090.01.T01:intron 40.0%
TACTCTTGTTCGAGAGAAAG+GGG + Chr3:79030548-79030567 None:intergenic 40.0%
TATTGTGAAGGGGAAACTCT+TGG + Chr3:79033021-79033040 None:intergenic 40.0%
TCATGATATTTGGGAACGTG+AGG + Chr3:79030482-79030501 None:intergenic 40.0%
TTAGGAACCCAAGAATGGAA+TGG - Chr3:79032942-79032961 MsG0380016090.01.T01:intron 40.0%
! ATAGCTTGTGGATTTGATGC+AGG - Chr3:79033578-79033597 MsG0380016090.01.T01:intron 40.0%
! CAACACCAACTTGCTTTACT+TGG + Chr3:79031084-79031103 None:intergenic 40.0%
! GTAAGTGCAAGTTGAACCTT+AGG + Chr3:79032435-79032454 None:intergenic 40.0%
! GTTGGGGATCAAAACTTTTC+AGG - Chr3:79031775-79031794 MsG0380016090.01.T01:intron 40.0%
! TAGCTTGTCGATTGATGTAG+AGG - Chr3:79033259-79033278 MsG0380016090.01.T01:CDS 40.0%
! TAGCTTGTGGATTTGATGCA+GGG - Chr3:79033579-79033598 MsG0380016090.01.T01:intron 40.0%
! TTGAAGCACTAACACAGAGA+CGG + Chr3:79030992-79031011 None:intergenic 40.0%
! TTTCTTATTGAAGGCGTGTC+CGG - Chr3:79030889-79030908 MsG0380016090.01.T01:intron 40.0%
!! CCTTTGCTATTGAGAAGTTG+GGG - Chr3:79031759-79031778 MsG0380016090.01.T01:intron 40.0%
!! GCCTTTGCTATTGAGAAGTT+GGG - Chr3:79031758-79031777 MsG0380016090.01.T01:intron 40.0%
!! GTTTTCCAGAACTTGTTCCA+TGG + Chr3:79031495-79031514 None:intergenic 40.0%
!!! TGTGTTTTAGCCGTCATATG+CGG - Chr3:79034247-79034266 MsG0380016090.01.T01:CDS 40.0%
ACCAAGCATCTCCTCATTCT+TGG + Chr3:79034363-79034382 None:intergenic 45.0%
AGCTTGTGGATTTGATGCAG+GGG - Chr3:79033580-79033599 MsG0380016090.01.T01:intron 45.0%
AGTATCAGATGCAACTCTCC+TGG - Chr3:79030564-79030583 MsG0380016090.01.T01:three_prime_UTR 45.0%
CAGTGGCTTGAAGAAGAGAA+GGG + Chr3:79030517-79030536 None:intergenic 45.0%
CCAACCATAGCTGCAAATAG+CGG + Chr3:79030752-79030771 None:intergenic 45.0%
CCCCAACTTCTCAATAGCAA+AGG + Chr3:79031762-79031781 None:intergenic 45.0%
CTTCTTGGAACCTTCTCTCA+TGG - Chr3:79030635-79030654 MsG0380016090.01.T01:exon 45.0%
GAAACCACTTGAGAAGAGAG+AGG + Chr3:79033532-79033551 None:intergenic 45.0%
GCATAACGGTTTAGCGGTTA+TGG + Chr3:79032382-79032401 None:intergenic 45.0%
TAAACCATTCCACAGACCCA+TGG - Chr3:79031475-79031494 MsG0380016090.01.T01:intron 45.0%
TCTCCTGTTGACATAGCTTG+TGG - Chr3:79033566-79033585 MsG0380016090.01.T01:intron 45.0%
TTGTTCGAGAGAAAGGGGTT+CGG + Chr3:79030543-79030562 None:intergenic 45.0%
! GAGGAGATGCTTGGTTTGAT+GGG - Chr3:79034368-79034387 MsG0380016090.01.T01:intron 45.0%
! TGAGGAGATGCTTGGTTTGA+TGG - Chr3:79034367-79034386 MsG0380016090.01.T01:intron 45.0%
!! GGCCTTTGCTATTGAGAAGT+TGG - Chr3:79031757-79031776 MsG0380016090.01.T01:intron 45.0%
CAGACCCATGGAACAAGTTC+TGG - Chr3:79031487-79031506 MsG0380016090.01.T01:intron 50.0%
CCGCTATTTGCAGCTATGGT+TGG - Chr3:79030749-79030768 MsG0380016090.01.T01:intron 50.0%
CCTTTCCAAGTCCTTTGCCA+CGG + Chr3:79031718-79031737 None:intergenic 50.0%
CTGGTCACGTGATCTCAACA+AGG - Chr3:79030583-79030602 MsG0380016090.01.T01:three_prime_UTR 50.0%
CTTGTTGAGATCACGTGACC+AGG + Chr3:79030585-79030604 None:intergenic 50.0%
GCAGTGGCTTGAAGAAGAGA+AGG + Chr3:79030518-79030537 None:intergenic 50.0%
GCCAAGAATGAGGAGATGCT+TGG - Chr3:79034359-79034378 MsG0380016090.01.T01:intron 50.0%
TCTCCCTCTCTCTTCTCAAG+TGG - Chr3:79033525-79033544 MsG0380016090.01.T01:CDS 50.0%
TGTGAAGGGGAAACTCTTGG+AGG + Chr3:79033018-79033037 None:intergenic 50.0%
TGTTAGCATAGCCGTGGCAA+AGG - Chr3:79031704-79031723 MsG0380016090.01.T01:intron 50.0%
TGTTCCATGGGTCTGTGGAA+TGG + Chr3:79031482-79031501 None:intergenic 50.0%
! GAACTTGTTCCATGGGTCTG+TGG + Chr3:79031487-79031506 None:intergenic 50.0%
! TGTGCCGCTATTTGCAGCTA+TGG - Chr3:79030745-79030764 MsG0380016090.01.T01:intron 50.0%
AGAAAGGGGTTCGGAAGCAG+TGG + Chr3:79030534-79030553 None:intergenic 55.0%
CATAGCCGTGGCAAAGGACT+TGG - Chr3:79031710-79031729 MsG0380016090.01.T01:intron 55.0%
CATGGTCAACCCCACGTTGA+AGG - Chr3:79030653-79030672 MsG0380016090.01.T01:CDS 55.0%
CCGTGGCAAAGGACTTGGAA+AGG - Chr3:79031715-79031734 MsG0380016090.01.T01:intron 55.0%
GTGGGGTTGACCATGAGAGA+AGG + Chr3:79030648-79030667 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79030473 79034589 79030473 ID=MsG0380016090.01;Name=MsG0380016090.01
Chr3 mRNA 79030473 79034589 79030473 ID=MsG0380016090.01.T01;Parent=MsG0380016090.01;Name=MsG0380016090.01.T01;_AED=0.41;_eAED=0.50;_QI=0|0|0.6|1|1|1|5|177|202
Chr3 exon 79030473 79030730 79030473 ID=MsG0380016090.01.T01:exon:17789;Parent=MsG0380016090.01.T01
Chr3 exon 79033215 79033352 79033215 ID=MsG0380016090.01.T01:exon:17788;Parent=MsG0380016090.01.T01
Chr3 exon 79033455 79033572 79033455 ID=MsG0380016090.01.T01:exon:17787;Parent=MsG0380016090.01.T01
Chr3 exon 79034213 79034300 79034213 ID=MsG0380016090.01.T01:exon:17786;Parent=MsG0380016090.01.T01
Chr3 exon 79034406 79034589 79034406 ID=MsG0380016090.01.T01:exon:17785;Parent=MsG0380016090.01.T01
Chr3 CDS 79034406 79034589 79034406 ID=MsG0380016090.01.T01:cds;Parent=MsG0380016090.01.T01
Chr3 CDS 79034213 79034300 79034213 ID=MsG0380016090.01.T01:cds;Parent=MsG0380016090.01.T01
Chr3 CDS 79033455 79033572 79033455 ID=MsG0380016090.01.T01:cds;Parent=MsG0380016090.01.T01
Chr3 CDS 79033215 79033352 79033215 ID=MsG0380016090.01.T01:cds;Parent=MsG0380016090.01.T01
Chr3 CDS 79030650 79030730 79030650 ID=MsG0380016090.01.T01:cds;Parent=MsG0380016090.01.T01
Chr3 three_prime_UTR 79030473 79030649 79030473 ID=MsG0380016090.01.T01:three_prime_utr;Parent=MsG0380016090.01.T01
Gene Sequence

>MsG0380016090.01.T01

ATGGAACCTCACGTTCCCAAATATCATGAATGGATGCAAGACCCTTCTCTTCTTCAAGCCACTGCTTCCGAACCCCTTTCTCTCGAACAAGAGTATCAGATGCAACTCTCCTGGTCACGTGATCTCAACAAGGAAACTTTCATTCTCTTGGATAAAGACTTGCTTCTTGGAACCTTCTCTCATGCTATGGTTGGTGATGTAAATATTTTCATGAATGATATCAATGATCCTCAAATAGCAGAGGTTGAAATTATGATAGCTGAACAAACCAGACCCATGGAACAAGTTCTGGAAAACTTGTATTGGTTGTTAGTTCTTTACTGTACCATCTATGTTCTAAATTTAAAATCACTTGATTATGCACGTTCTAGATATAAAAGCTTTCCCCGGCATAGCCGTGGCAAAGGACTTGGAAAGGAGTCTGTTTTGATAATGATGGCCTTTGCTATTGAGAAGTTGGGGATCAAAACTTTTCAGGTTAAAATTGGAGAATCAAATTTAGAGTCCATCAACCTGTTTAAAAAACTGGTGACTTTGGAGTTGCAAATAACACAAGCCAAGAATGAGGAGATGCTTGGTTTGATGGGTACTGTGATTAAACACACATAA
Protein sequence

>MsG0380016090.01.T01

MEPHVPKYHEWMQDPSLLQATASEPLSLEQEYQMQLSWSRDLNKETFILLDKDLLLGTFSHAMVGDVNIFMNDINDPQIAEVEIMIAEQTRPMEQVLENLYWLLVLYCTIYVLNLKSLDYARSRYKSFPRHSRGKGLGKESVLIMMAFAIEKLGIKTFQVKIGESNLESINLFKKLVTLELQITQAKNEEMLGLMGTVIKHT*