AlfalfaGEDB | MsG0480021688.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021688.01

KEGG: -
GO: GO:0005515 GO:0007165 GO:0043531
PFAM: PF00931 PF01582

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021688.01.T01	XP_004510225.1	67.751	1014	292	5	1	988	92	1096	0	1390

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021688.01.T01	V9M398	37.966	698	384	8	1	664	105	787	4.65E-136	445

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021688.01.T01	A0A1S2YUP9	67.751	1014	292	5	1	988	92	1096	0.0	1390

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000470.01	MsG0480021688.01	0.828406	9.150423e-55	9.087112e-52
MsG0180001063.01	MsG0480021688.01	0.802636	5.107777e-49	2.514659e-46
MsG0180001971.01	MsG0480021688.01	0.801268	9.756927e-49	4.639613e-46
MsG0180002842.01	MsG0480021688.01	0.810584	1.072093e-50	6.487599e-48
MsG0180003673.01	MsG0480021688.01	0.812227	4.712900e-51	2.979712e-48
MsG0180003686.01	MsG0480021688.01	0.810149	1.330499e-50	7.959306e-48
MsG0180004264.01	MsG0480021688.01	0.801819	7.520587e-49	3.626395e-46
MsG0180005050.01	MsG0480021688.01	0.800831	1.198567e-48	5.636711e-46
MsG0180006134.01	MsG0480021688.01	0.808699	2.723515e-50	1.567840e-47
MsG0180006257.01	MsG0480021688.01	0.809419	1.910442e-50	1.121144e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480021688.01.T01	MTR_8g012200	67.893	1006	296	5	1	988	95	1091	1362
MsG0480021688.01.T01	MTR_8g073730	65.174	1005	323	6	1	988	90	1084	1317
MsG0480021688.01.T01	MTR_8g020430	72.065	920	217	6	1	917	91	973	1314
MsG0480021688.01.T01	MTR_8g011850	69.787	940	277	5	1	938	115	1049	1306
MsG0480021688.01.T01	MTR_8g011950	64.214	992	310	6	1	986	92	1044	1288
MsG0480021688.01.T01	MTR_3g022930	65.798	959	304	7	10	958	110	1054	1242
MsG0480021688.01.T01	MTR_2g437560	64.429	998	293	10	1	993	93	1033	1241
MsG0480021688.01.T01	MTR_5g047530	64.352	965	325	4	1	964	91	1037	1234
MsG0480021688.01.T01	MTR_5g047480	64.619	944	323	3	1	943	91	1024	1233
MsG0480021688.01.T01	MTR_8g012190	62.052	1004	341	7	1	986	84	1065	1232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021688.01.T01	AT5G36930	44.478	670	353	9	8	673	101	755	5.18e-168	522
MsG0480021688.01.T01	AT5G36930	44.478	670	353	9	8	673	104	758	1.23e-167	523
MsG0480021688.01.T01	AT5G36930	44.478	670	353	9	8	673	101	755	1.45e-167	523
MsG0480021688.01.T01	AT5G36930	44.478	670	353	9	8	673	101	755	1.45e-167	523
MsG0480021688.01.T01	AT5G17680	37.668	669	384	11	1	659	97	742	6.18e-127	417
MsG0480021688.01.T01	AT5G17680	37.519	669	384	12	1	659	97	741	1.70e-124	410
MsG0480021688.01.T01	AT1G27170	34.648	710	400	11	8	666	101	797	4.52e-124	410
MsG0480021688.01.T01	AT1G27170	34.936	707	398	11	11	666	102	797	2.72e-122	405
MsG0480021688.01.T01	AT1G27180	32.128	719	413	14	10	666	103	808	1.03e-110	369
MsG0480021688.01.T01	AT1G27180	32.128	719	413	14	10	666	103	808	6.13e-109	369

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Find 198 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGTACTTTCGCCA+AGG	0.640792	4:+62946845	MsG0480021688.01.T01:CDS
AAAATCTCCACATTGTCACC+AGG	0.659460	4:-62953520	None:intergenic
AAAGTTCGGCAAAAGAACCC+GGG	0.657654	4:+62949242	MsG0480021688.01.T01:CDS
AAATTGAGAATAAGCTATGA+TGG	0.498635	4:+62949001	MsG0480021688.01.T01:CDS
AACAGAAACTGTAGAGGGAT+TGG	0.473441	4:+62949603	MsG0480021688.01.T01:CDS
AAGAACTGAGATGGATTCAC+TGG	0.528073	4:+62949749	MsG0480021688.01.T01:CDS
AAGACTTCCATGAACTCTCA+AGG	0.564459	4:+62948843	MsG0480021688.01.T01:CDS
AAGCTGCTAATTTGTCTGGT+TGG	0.449985	4:+62946921	MsG0480021688.01.T01:CDS
AAGGGTTTAACATCAAATCT+AGG	0.422873	4:+62953496	MsG0480021688.01.T01:CDS
AAGTTTGCATGATAGGGATA+TGG	0.289538	4:+62948363	MsG0480021688.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTATCCAAGTTCTGT+TGG	-	Chr4:62952374-62952393	None:intergenic	30.0%
AAATCAGTTAAAACGGCTTA+TGG	-	Chr4:62947733-62947752	None:intergenic	30.0%
AAATGAAGCATATGACTTTG+TGG	+	Chr4:62952629-62952648	MsG0480021688.01.T01:intron	30.0%
AAGGGTTTAACATCAAATCT+AGG	+	Chr4:62953496-62953515	MsG0480021688.01.T01:CDS	30.0%
AATAAGCTATGATGGTTTGA+AGG	+	Chr4:62949009-62949028	MsG0480021688.01.T01:CDS	30.0%
AATATGTGTTGTCAAATTGG+AGG	+	Chr4:62946885-62946904	MsG0480021688.01.T01:CDS	30.0%
AATTGAGTCAGCAATTAACA+CGG	+	Chr4:62953618-62953637	MsG0480021688.01.T01:CDS	30.0%
ACCGCTAGTGTAAAAAATAT+AGG	-	Chr4:62951945-62951964	None:intergenic	30.0%
ACTATGATGCCTACATATAA+AGG	-	Chr4:62952900-62952919	None:intergenic	30.0%
ACTTGTCTCATTAATACTAG+TGG	+	Chr4:62947410-62947429	MsG0480021688.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	62946731	62953819	62946731	ID=MsG0480021688.01;Name=MsG0480021688.01
Chr4	mRNA	62946731	62953819	62946731	ID=MsG0480021688.01.T01;Parent=MsG0480021688.01;Name=MsG0480021688.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|1\|1\|1\|5\|0\|994
Chr4	exon	62946731	62946960	62946731	ID=MsG0480021688.01.T01:exon:7243;Parent=MsG0480021688.01.T01
Chr4	exon	62948220	62949321	62948220	ID=MsG0480021688.01.T01:exon:7242;Parent=MsG0480021688.01.T01
Chr4	exon	62949601	62949876	62949601	ID=MsG0480021688.01.T01:exon:7241;Parent=MsG0480021688.01.T01
Chr4	exon	62949968	62950744	62949968	ID=MsG0480021688.01.T01:exon:7240;Parent=MsG0480021688.01.T01
Chr4	exon	62953220	62953819	62953220	ID=MsG0480021688.01.T01:exon:7239;Parent=MsG0480021688.01.T01
Chr4	CDS	62946731	62946960	62946731	ID=MsG0480021688.01.T01:cds;Parent=MsG0480021688.01.T01
Chr4	CDS	62948220	62949321	62948220	ID=MsG0480021688.01.T01:cds;Parent=MsG0480021688.01.T01
Chr4	CDS	62949601	62949876	62949601	ID=MsG0480021688.01.T01:cds;Parent=MsG0480021688.01.T01
Chr4	CDS	62949968	62950744	62949968	ID=MsG0480021688.01.T01:cds;Parent=MsG0480021688.01.T01
Chr4	CDS	62953220	62953819	62953220	ID=MsG0480021688.01.T01:cds;Parent=MsG0480021688.01.T01

Gene Sequence

>MsG0480021688.01.T01

ATGGAATGTTACAGAACTCAGGGTCAGCTTGTTGTCCCTGTGTTTTACGACGTCGACCCGTCGGTTGTTCGCCACCAGAAGGGTGATTTTGGAAAAAAATTGAGAGCTACTGCCAAAAGAATGTACTTTCGCCAAGGAGGAGAGGAGAGGGTGGAATATGTGTTGTCAAATTGGAGGAATGCACTTACTCAAGCTGCTAATTTGTCTGGTTGGGATGTCCTCAATTGCAGGAGTGAAGGTGAACTAATGCGGCAAATTGTTGAAGATGTTTTGGCAAAACTAGACAACACATTATTGTCTATTACCGAATTTCCAGTTGGATTGGAATCCCGTGTGGGACAAGTGGCTGACTTTATTGAAAATCAACCAAAGAAAGTTTGCATGATAGGGATATGGGGAATGGGAGGCTCCGGTAAAACAACCACAGCTAAAGCTATCTACAATCGAATTCATCGGAAATTTGTCGATAGAAGTTTTGTTGAAAATGTTAGAGAAGTATGTGAAAAGGAAAATAGAGGGATTATTCATTTACAACAACAACTTCTTTCAGATATACTGAACACAAAGGAGAGGATACATAGCATTGCGTTAGGAACAACAAAGATTGAGAAAAGATTTTGTGGGAAAAAGGCACTCATTGTGCTTGATGATGTGACCACATTTGAACAGTTAAAATCGTTATGTGGAAATCCTAAACTGTTTTGTCCGGGAAGTGTGTTAATTGTTACAACTAGAGATGTACGTCTGCTTAATTTATTTAAGGTTGATTATGTGTATTCAATGAAGGAAATGGACGAAAAGGAGTCCCTTGAGCTTTTCTGCTGGCATGCTTTTAGACAACCTTGCCCAATCAAAGACTTCCATGAACTCTCAAGGAATGTAGTTGCTTATTGTGGAGGATTACCTGTTGCTCTTGAAGTCCTAGGTTCTTACTTATGTGAGAGGACAAAAGAAGAATGGATAAGTGTACTCTCGAAACTAAAAAGAATTCCCCATGATCAAGTCCAAGAGAAATTGAGAATAAGCTATGATGGTTTGAAGGATGATATGGCAAAGGATTTATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGAGAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCAAATATTGGAATAACTGTCCTTGTAGAGCGGAGTCTTGTAAAAATTGAAAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGTGAAAGTTCGGCAAAAGAACCCGGGAAGCGTAGTAGATTATGGTTTCGTGAGGATGTGCACGATATTTTGACAAAACATACTGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGGTGCAAAAAACCAGTAGATTTCTCTTAAGTACTGATTCTTTCAAGGAGATGAAAAAACTGAGACTTTTACAACTTGATCATGCCGTCCTCACTGGAGATTATCGGTATCTTTCCAAAGAACTGAGATGGATTCACTGGCAAGGATTTACCTTCAACTACATACCCGATGAATTTTATCAGGGAAATCTAGTTGTCCTTGAAATAAAATACAGCAATATCAAACATGTGTGGAAGGAAACCAAGTTGTTGGATAAACTAACAATTCTCAATGTTAGTCATTCTAGATACTTGAAAAACACCCCTGATTTTTCAAAATTACCAAATCTAGAAAAGCTTATCATGAAGAATTGTCCAAGTTTATCAGAGGTACACCATTCCATTGGAGATCTCAAGAATCTACTTCTATTGAATTTGAAGGACTGTACAAGTCTTAGCAACCTCCCTATGAAGATCTATAAATTGAAATCTTTGAAAACTCTTATACTTTCTGGTTGTACAAAGATTGACAAGTTGGAAGAAGACATGGGGCAGATGGAGTCCTTGACAACACTAATTGCAAAAGATACATCTGTAAAAGAAGTCCCCTATTCAATACTAAGATTAAAAAGTATTGGATTTATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCGTTTGGTCTTGGATGACACCATCCGTGAATTCTCTACCATGTATATCCCCATTTCAGGGAAGTTCATTGTCTCTTGTTTCCTTGGATGTAACAAGTAATAATATGGGCTATCAATCACCAGTGCTTAGCAACCTTGCAAAACTTAGAAGTGTTTTGGTTCAATGCCGATCACAGATTCAACTGACTCAAGAATTAAGAAATTTTTTTGATGATCTATATGATGTTAATTTTACCAAGTTGGAAACAACATCACATGCATCACAAATCGTTGACAGTTCCTTGAGATCGCTTTTGATTGGGATGGGAAGTTGTCACCTGGTCATCGACACTCTTGGCAAGAGCATATCACAGGGATTGGCAATCAATGATTCTAGTGGTTTTTGCTTTCCGGGTAGCAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGAACTTCAGCACTGTTTCAAATTCCTGAGGATATTGATTGTCACATGAAGGGAATAATTTTATGCGTTGTTTATTCATCAACGTCGGAAAATGTGGCTGCTGAATGTCTTGCTAATGTCTTGATCATTAATTACACAAAATGCACATTCCAAATATACAAGGGAGACACAGTAATGTCTTTTAATGATGAAGATTGGAAGGGTTTAACATCAAATCTAGGACCTGGTGACAATGTGGAGATTTTTGTAGCATTTAGCCATGGATTGACTGTTAAGGAGACTGCTGTATATCTAATATATGGCCATTCAGTTGCTATGGAAATTGAGTCAGCAATTAACACGGAAATGAAGCTTTCGCCTGAAGTGAACTCGCAGCCATCATCCACTGTGAAAACTGAGCCATCACTTGATGTAAAAACGAAGTCATCGCGGAATCCAAATGAAAAAATATTTTCAAGACTTGCAAAGAGAATGGGAAAATGTTTATGCCTAAACCAGAATAGAGGTCTCAACAATCATTGA

Protein sequence

>MsG0480021688.01.T01

MECYRTQGQLVVPVFYDVDPSVVRHQKGDFGKKLRATAKRMYFRQGGEERVEYVLSNWRNALTQAANLSGWDVLNCRSEGELMRQIVEDVLAKLDNTLLSITEFPVGLESRVGQVADFIENQPKKVCMIGIWGMGGSGKTTTAKAIYNRIHRKFVDRSFVENVREVCEKENRGIIHLQQQLLSDILNTKERIHSIALGTTKIEKRFCGKKALIVLDDVTTFEQLKSLCGNPKLFCPGSVLIVTTRDVRLLNLFKVDYVYSMKEMDEKESLELFCWHAFRQPCPIKDFHELSRNVVAYCGGLPVALEVLGSYLCERTKEEWISVLSKLKRIPHDQVQEKLRISYDGLKDDMAKDLFLDICCFFIGKERAYVTEILNGCGLYANIGITVLVERSLVKIEKNNKLGMHDLIRDMGREIVRESSAKEPGKRSRLWFREDVHDILTKHTGTETVEGLVLKVQKTSRFLLSTDSFKEMKKLRLLQLDHAVLTGDYRYLSKELRWIHWQGFTFNYIPDEFYQGNLVVLEIKYSNIKHVWKETKLLDKLTILNVSHSRYLKNTPDFSKLPNLEKLIMKNCPSLSEVHHSIGDLKNLLLLNLKDCTSLSNLPMKIYKLKSLKTLILSGCTKIDKLEEDMGQMESLTTLIAKDTSVKEVPYSILRLKSIGFISLCGYEGLSRDVFPSLVWSWMTPSVNSLPCISPFQGSSLSLVSLDVTSNNMGYQSPVLSNLAKLRSVLVQCRSQIQLTQELRNFFDDLYDVNFTKLETTSHASQIVDSSLRSLLIGMGSCHLVIDTLGKSISQGLAINDSSGFCFPGSNYPSWLAYTGEGTSALFQIPEDIDCHMKGIILCVVYSSTSENVAAECLANVLIINYTKCTFQIYKGDTVMSFNDEDWKGLTSNLGPGDNVEIFVAFSHGLTVKETAVYLIYGHSVAMEIESAINTEMKLSPEVNSQPSSTVKTEPSLDVKTKSSRNPNEKIFSRLAKRMGKCLCLNQNRGLNNH*