Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029905.01.T01 | XP_003617696.1 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0 | 545 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029905.01.T01 | G7K4D9 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048878.01 | MsG0580029905.01 | 0.800699 | 1.275110e-48 | 5.976473e-46 |
MsG0180000354.01 | MsG0580029905.01 | 0.807615 | 4.635520e-50 | 2.593711e-47 |
MsG0180000355.01 | MsG0580029905.01 | 0.839129 | 1.905252e-57 | 2.606106e-54 |
MsG0180003353.01 | MsG0580029905.01 | 0.816960 | 4.224010e-52 | 3.036440e-49 |
MsG0180003821.01 | MsG0580029905.01 | 0.845235 | 4.609273e-59 | 7.631261e-56 |
MsG0180004276.01 | MsG0580029905.01 | 0.810450 | 1.145636e-50 | 6.907815e-48 |
MsG0180004493.01 | MsG0580029905.01 | 0.815323 | 9.803679e-52 | 6.737898e-49 |
MsG0480020690.01 | MsG0580029905.01 | 0.802640 | 5.097352e-49 | 2.509757e-46 |
MsG0480021037.01 | MsG0580029905.01 | 0.820855 | 5.502314e-53 | 4.404595e-50 |
MsG0480021768.01 | MsG0580029905.01 | 0.816884 | 4.393731e-52 | 3.151533e-49 |
MsG0480022921.01 | MsG0580029905.01 | 0.825193 | 5.357652e-54 | 4.849679e-51 |
MsG0480023384.01 | MsG0580029905.01 | 0.834588 | 2.747674e-56 | 3.275561e-53 |
MsG0580025971.01 | MsG0580029905.01 | 0.809130 | 2.203105e-50 | 1.282962e-47 |
MsG0380016671.01 | MsG0580029905.01 | 0.821849 | 3.244673e-53 | 2.670660e-50 |
MsG0580029905.01 | MsG0680031939.01 | 0.829493 | 4.992491e-55 | 5.117769e-52 |
MsG0580029905.01 | MsG0780038948.01 | 0.807292 | 5.429068e-50 | 3.012450e-47 |
MsG0580029905.01 | MsG0880044005.01 | 0.802356 | 5.833587e-49 | 2.851733e-46 |
MsG0580029905.01 | MsG0880045684.01 | 0.805649 | 1.205773e-49 | 6.413838e-47 |
MsG0580029905.01 | MsG0880047442.01 | 0.803159 | 3.981039e-49 | 1.986324e-46 |
MsG0580029905.01 | MsG0880047703.01 | 0.809276 | 2.050067e-50 | 1.198480e-47 |
MsG0280007903.01 | MsG0580029905.01 | 0.806064 | 9.861722e-50 | 5.302023e-47 |
MsG0280009685.01 | MsG0580029905.01 | 0.815396 | 9.443462e-52 | 6.503343e-49 |
MsG0280010503.01 | MsG0580029905.01 | 0.805623 | 1.220840e-49 | 6.489652e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029905.01.T01 | MTR_5g094440 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
MsG0580029905.01.T01 | MTR_3g072920 | 32.536 | 209 | 126 | 5 | 74 | 269 | 243 | 449 | 1.57e-32 | 124 |
MsG0580029905.01.T01 | MTR_1g024980 | 33.981 | 206 | 119 | 6 | 74 | 269 | 201 | 399 | 6.15e-30 | 116 |
MsG0580029905.01.T01 | MTR_4g081420 | 34.783 | 207 | 121 | 5 | 74 | 268 | 230 | 434 | 1.01e-27 | 110 |
MsG0580029905.01.T01 | MTR_3g463270 | 31.646 | 237 | 127 | 11 | 61 | 270 | 160 | 388 | 2.26e-24 | 100 |
MsG0580029905.01.T01 | MTR_2g010870 | 29.018 | 224 | 112 | 6 | 79 | 269 | 145 | 354 | 2.32e-19 | 87.0 |
MsG0580029905.01.T01 | MTR_2g010860 | 28.986 | 207 | 123 | 6 | 80 | 269 | 176 | 375 | 1.37e-17 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029905.01.T01 | AT5G54630 | 36.574 | 216 | 112 | 8 | 74 | 268 | 258 | 469 | 3.82e-27 | 109 |
MsG0580029905.01.T01 | AT4G27240 | 34.562 | 217 | 121 | 8 | 68 | 268 | 217 | 428 | 1.05e-25 | 105 |
MsG0580029905.01.T01 | AT1G75710 | 31.169 | 231 | 120 | 8 | 74 | 269 | 231 | 457 | 2.54e-23 | 99.0 |
MsG0580029905.01.T01 | AT4G27240 | 35.593 | 177 | 100 | 5 | 68 | 234 | 217 | 389 | 1.32e-22 | 96.7 |
MsG0580029905.01.T01 | AT2G29660 | 29.596 | 223 | 126 | 8 | 74 | 269 | 153 | 371 | 1.05e-19 | 87.8 |
MsG0580029905.01.T01 | AT1G11490 | 29.694 | 229 | 124 | 10 | 65 | 269 | 148 | 363 | 6.75e-16 | 77.0 |
MsG0580029905.01.T01 | AT1G11490 | 29.694 | 229 | 124 | 10 | 65 | 269 | 148 | 363 | 6.75e-16 | 77.0 |
Find 43 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTACTCCCTTTGCCAAATTT+TGG | 0.172903 | 5:-103808054 | None:intergenic |
TTTCCATCTACTGTACTTCT+TGG | 0.258911 | 5:-103808882 | None:intergenic |
ATAAGGCAGCCACCAAAATT+TGG | 0.275929 | 5:+103808042 | MsG0580029905.01.T01:CDS |
GGATTGTACATTCTTAAATA+TGG | 0.289951 | 5:-103809351 | None:intergenic |
GGAAAGTTAGAACAGTTCTA+AGG | 0.320437 | 5:+103808784 | MsG0580029905.01.T01:CDS |
ACAAACTCACTGATGTAATA+AGG | 0.337481 | 5:+103808025 | MsG0580029905.01.T01:CDS |
AACTTTCCTCAGTGGCTTTG+AGG | 0.349977 | 5:-103808769 | None:intergenic |
AGATCATGAACTTTCTTCAT+AGG | 0.351902 | 5:-103808954 | None:intergenic |
ATAGTTTGCAGGATAATTGC+TGG | 0.375937 | 5:+103809125 | MsG0580029905.01.T01:CDS |
TTTAACATAAAGAGCCTGTT+TGG | 0.387233 | 5:+103809385 | MsG0580029905.01.T01:three_prime_UTR |
AGCCGAGCCTGTGTGTTGTT+TGG | 0.410884 | 5:-103808171 | None:intergenic |
AGCCTGTGTGTTGTTTGGCT+TGG | 0.421270 | 5:-103808166 | None:intergenic |
CATCCAAGAAGTACAGTAGA+TGG | 0.426400 | 5:+103808879 | MsG0580029905.01.T01:CDS |
AGGAAGAAATGCAAGCCTTA+TGG | 0.429141 | 5:+103807971 | MsG0580029905.01.T01:exon |
CTTTCTTCATAGGTTTCCCT+TGG | 0.432529 | 5:-103808944 | None:intergenic |
TCGAATAAATAAATCCAAAC+AGG | 0.433598 | 5:-103809399 | None:intergenic |
ACTGTACTTCTTGGATGCCT+TGG | 0.453519 | 5:-103808873 | None:intergenic |
ACAAACACACACAAATTAAG+AGG | 0.454752 | 5:+103807951 | MsG0580029905.01.T01:five_prime_UTR |
GAGTAGCTATGTTCTACAAA+AGG | 0.501056 | 5:+103808071 | MsG0580029905.01.T01:CDS |
GTCTTTCAAAGACAACCATA+AGG | 0.501827 | 5:-103807986 | None:intergenic |
AGCCACCAAAATTTGGCAAA+GGG | 0.512723 | 5:+103808049 | MsG0580029905.01.T01:CDS |
AGATGATATTTCAGAAAGCA+TGG | 0.538196 | 5:+103808739 | MsG0580029905.01.T01:CDS |
GAAAGTTAGAACAGTTCTAA+GGG | 0.550047 | 5:+103808785 | MsG0580029905.01.T01:CDS |
CAGCCACCAAAATTTGGCAA+AGG | 0.555527 | 5:+103808048 | MsG0580029905.01.T01:CDS |
TTGAAAGACAATGTCAAATG+TGG | 0.555657 | 5:+103808000 | MsG0580029905.01.T01:CDS |
AAGTGAAGAAACAGTATCCA+AGG | 0.559280 | 5:+103808856 | MsG0580029905.01.T01:CDS |
GTTCTGAGTGTGACTCAACT+AGG | 0.563240 | 5:+103809186 | MsG0580029905.01.T01:CDS |
GAGTGTGACTCAACTAGGCT+AGG | 0.568204 | 5:+103809191 | MsG0580029905.01.T01:CDS |
AGCCAAACAACACACAGGCT+CGG | 0.581716 | 5:+103808169 | MsG0580029905.01.T01:CDS |
TTGAAAATTATGACAAAACA+AGG | 0.601697 | 5:-103809269 | None:intergenic |
ACTGCAGTGAATGAAGTTGA+TGG | 0.605466 | 5:+103809149 | MsG0580029905.01.T01:CDS |
TAGCTGGAATTTCCATGAGG+GGG | 0.606181 | 5:-103808131 | None:intergenic |
ACTACAATGAGATGTTTCCA+AGG | 0.610196 | 5:+103808927 | MsG0580029905.01.T01:CDS |
AAACAAGGAAGAATAGAACT+AGG | 0.612460 | 5:-103809254 | None:intergenic |
TCTAGCTGGAATTTCCATGA+GGG | 0.619119 | 5:-103808133 | None:intergenic |
TTCCAAGCCAAACAACACAC+AGG | 0.628310 | 5:+103808164 | MsG0580029905.01.T01:CDS |
ACTGTTCTAACTTTCCTCAG+TGG | 0.641903 | 5:-103808777 | None:intergenic |
AGCTGGAATTTCCATGAGGG+GGG | 0.644140 | 5:-103808130 | None:intergenic |
CTAGCTGGAATTTCCATGAG+GGG | 0.652167 | 5:-103808132 | None:intergenic |
ACTTGACAAAATCGACACGA+TGG | 0.658301 | 5:-103808987 | None:intergenic |
CTACAATGAGATGTTTCCAA+GGG | 0.668592 | 5:+103808928 | MsG0580029905.01.T01:CDS |
GTCTAGCTGGAATTTCCATG+AGG | 0.668741 | 5:-103808134 | None:intergenic |
TGAACACCTCAAAGCCACTG+AGG | 0.730072 | 5:+103808763 | MsG0580029905.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAAATGTAATTTAAAAG+AGG | - | Chr5:103808217-103808236 | None:intergenic | 10.0% |
!! | TCTTTATGTTAAAAAATTCA+AGG | - | Chr5:103809378-103809397 | None:intergenic | 15.0% |
!! | TTCACATTTATTACATATAT+CGG | + | Chr5:103808544-103808563 | MsG0580029905.01.T01:intron | 15.0% |
!!! | ATTTACTATTGATTTTATGT+AGG | + | Chr5:103808634-103808653 | MsG0580029905.01.T01:intron | 15.0% |
!! | TTATGTTAAAAAATTCAAGG+AGG | - | Chr5:103809375-103809394 | None:intergenic | 20.0% |
!! | TTGAAAATTATGACAAAACA+AGG | - | Chr5:103809272-103809291 | None:intergenic | 20.0% |
!!! | AAAAAGTTTTAATAGTTTGC+AGG | + | Chr5:103809114-103809133 | MsG0580029905.01.T01:CDS | 20.0% |
! | ACAACATAACATATACTGAT+AGG | + | Chr5:103808320-103808339 | MsG0580029905.01.T01:intron | 25.0% |
! | GGATTGTACATTCTTAAATA+TGG | - | Chr5:103809354-103809373 | None:intergenic | 25.0% |
! | TTGAAATGTAACAAGAGTTA+TGG | + | Chr5:103808351-103808370 | MsG0580029905.01.T01:intron | 25.0% |
!! | AAAGTGCTTATAAATAGTGA+CGG | - | Chr5:103808525-103808544 | None:intergenic | 25.0% |
!! | ATCTCAACAATTTTTCTTGA+AGG | - | Chr5:103808723-103808742 | None:intergenic | 25.0% |
!! | TCCTCTACATTGTTAAATTT+TGG | + | Chr5:103808677-103808696 | MsG0580029905.01.T01:intron | 25.0% |
!! | TCTCAACAATTTTTCTTGAA+GGG | - | Chr5:103808722-103808741 | None:intergenic | 25.0% |
!!! | AAATAGTTTGCTACATTATG+TGG | - | Chr5:103808389-103808408 | None:intergenic | 25.0% |
!!! | TCACTATTCGTTTTTATCTT+TGG | + | Chr5:103809318-103809337 | MsG0580029905.01.T01:three_prime_UTR | 25.0% |
AAACAAGGAAGAATAGAACT+AGG | - | Chr5:103809257-103809276 | None:intergenic | 30.0% | |
ACAAACACACACAAATTAAG+AGG | + | Chr5:103807951-103807970 | MsG0580029905.01.T01:five_prime_UTR | 30.0% | |
ACAAACTCACTGATGTAATA+AGG | + | Chr5:103808025-103808044 | MsG0580029905.01.T01:CDS | 30.0% | |
AGATCATGAACTTTCTTCAT+AGG | - | Chr5:103808957-103808976 | None:intergenic | 30.0% | |
AGATGATATTTCAGAAAGCA+TGG | + | Chr5:103808739-103808758 | MsG0580029905.01.T01:CDS | 30.0% | |
CATCAAAAACTTGACATCTA+CGG | - | Chr5:103808460-103808479 | None:intergenic | 30.0% | |
GCCAAAATTTAACAATGTAG+AGG | - | Chr5:103808681-103808700 | None:intergenic | 30.0% | |
TATGTTGTGTTCATGCATAT+AGG | - | Chr5:103808308-103808327 | None:intergenic | 30.0% | |
TTGAAAGACAATGTCAAATG+TGG | + | Chr5:103808000-103808019 | MsG0580029905.01.T01:CDS | 30.0% | |
TTTAACATAAAGAGCCTGTT+TGG | + | Chr5:103809385-103809404 | MsG0580029905.01.T01:three_prime_UTR | 30.0% | |
! | GAAAGTTAGAACAGTTCTAA+GGG | + | Chr5:103808785-103808804 | MsG0580029905.01.T01:CDS | 30.0% |
! | TTTCAACTGACATGTTTTGT+AGG | + | Chr5:103809286-103809305 | MsG0580029905.01.T01:exon | 30.0% |
AAGTGAAGAAACAGTATCCA+AGG | + | Chr5:103808856-103808875 | MsG0580029905.01.T01:CDS | 35.0% | |
ACTACAATGAGATGTTTCCA+AGG | + | Chr5:103808927-103808946 | MsG0580029905.01.T01:CDS | 35.0% | |
CTACAATGAGATGTTTCCAA+GGG | + | Chr5:103808928-103808947 | MsG0580029905.01.T01:CDS | 35.0% | |
GAGTAGCTATGTTCTACAAA+AGG | + | Chr5:103808071-103808090 | MsG0580029905.01.T01:CDS | 35.0% | |
GGAAAGTTAGAACAGTTCTA+AGG | + | Chr5:103808784-103808803 | MsG0580029905.01.T01:CDS | 35.0% | |
GTCTTTCAAAGACAACCATA+AGG | - | Chr5:103807989-103808008 | None:intergenic | 35.0% | |
TTCTTACTACTGAACTCCTT+TGG | + | Chr5:103808267-103808286 | MsG0580029905.01.T01:intron | 35.0% | |
TTTCCATCTACTGTACTTCT+TGG | - | Chr5:103808885-103808904 | None:intergenic | 35.0% | |
! | ATAGTTTGCAGGATAATTGC+TGG | + | Chr5:103809125-103809144 | MsG0580029905.01.T01:CDS | 35.0% |
! | TTGGAAAAAACTAGTCTAGC+TGG | - | Chr5:103808150-103808169 | None:intergenic | 35.0% |
!! | TGTTAAATTTTGGCAGAGCT+TGG | + | Chr5:103808687-103808706 | MsG0580029905.01.T01:intron | 35.0% |
AATCGCGGTCTAATTCAATG+TGG | - | Chr5:103808492-103808511 | None:intergenic | 40.0% | |
ACTGCAGTGAATGAAGTTGA+TGG | + | Chr5:103809149-103809168 | MsG0580029905.01.T01:CDS | 40.0% | |
ACTGTTCTAACTTTCCTCAG+TGG | - | Chr5:103808780-103808799 | None:intergenic | 40.0% | |
ACTTGACAAAATCGACACGA+TGG | - | Chr5:103808990-103809009 | None:intergenic | 40.0% | |
AGCCACCAAAATTTGGCAAA+GGG | + | Chr5:103808049-103808068 | MsG0580029905.01.T01:CDS | 40.0% | |
AGGAAGAAATGCAAGCCTTA+TGG | + | Chr5:103807971-103807990 | MsG0580029905.01.T01:exon | 40.0% | |
ATAAGGCAGCCACCAAAATT+TGG | + | Chr5:103808042-103808061 | MsG0580029905.01.T01:CDS | 40.0% | |
CTTTCTTCATAGGTTTCCCT+TGG | - | Chr5:103808947-103808966 | None:intergenic | 40.0% | |
GAGCAACAAACTCTTTCCAA+AGG | - | Chr5:103808286-103808305 | None:intergenic | 40.0% | |
GTGCTTATAAATAGTGACGG+AGG | - | Chr5:103808522-103808541 | None:intergenic | 40.0% | |
TCTAGCTGGAATTTCCATGA+GGG | - | Chr5:103808136-103808155 | None:intergenic | 40.0% | |
! | CATCCAAGAAGTACAGTAGA+TGG | + | Chr5:103808879-103808898 | MsG0580029905.01.T01:CDS | 40.0% |
! | CTACTCCCTTTGCCAAATTT+TGG | - | Chr5:103808057-103808076 | None:intergenic | 40.0% |
!! | ATTTTGGCAGAGCTTGGTAT+TGG | + | Chr5:103808693-103808712 | MsG0580029905.01.T01:intron | 40.0% |
ACTGTACTTCTTGGATGCCT+TGG | - | Chr5:103808876-103808895 | None:intergenic | 45.0% | |
AGAAGATAATACCCCCCTCA+TGG | + | Chr5:103808119-103808138 | MsG0580029905.01.T01:CDS | 45.0% | |
CAGCCACCAAAATTTGGCAA+AGG | + | Chr5:103808048-103808067 | MsG0580029905.01.T01:CDS | 45.0% | |
CTAGCTGGAATTTCCATGAG+GGG | - | Chr5:103808135-103808154 | None:intergenic | 45.0% | |
GACGGAGGAGAAAAAAATCG+CGG | - | Chr5:103808507-103808526 | None:intergenic | 45.0% | |
GTCTAGCTGGAATTTCCATG+AGG | - | Chr5:103808137-103808156 | None:intergenic | 45.0% | |
TAGCTGGAATTTCCATGAGG+GGG | - | Chr5:103808134-103808153 | None:intergenic | 45.0% | |
TTCCAAGCCAAACAACACAC+AGG | + | Chr5:103808164-103808183 | MsG0580029905.01.T01:CDS | 45.0% | |
! | AACTTTCCTCAGTGGCTTTG+AGG | - | Chr5:103808772-103808791 | None:intergenic | 45.0% |
! | CTCCCTTTGCCAAATTTTGG+TGG | - | Chr5:103808054-103808073 | None:intergenic | 45.0% |
! | GTTCTGAGTGTGACTCAACT+AGG | + | Chr5:103809186-103809205 | MsG0580029905.01.T01:CDS | 45.0% |
!! | CAATTTTGACGCGAAACACG+CGG | + | Chr5:103809019-103809038 | MsG0580029905.01.T01:CDS | 45.0% |
AGCCAAACAACACACAGGCT+CGG | + | Chr5:103808169-103808188 | MsG0580029905.01.T01:CDS | 50.0% | |
AGCTGGAATTTCCATGAGGG+GGG | - | Chr5:103808133-103808152 | None:intergenic | 50.0% | |
GAGTGTGACTCAACTAGGCT+AGG | + | Chr5:103809191-103809210 | MsG0580029905.01.T01:CDS | 50.0% | |
TGAACACCTCAAAGCCACTG+AGG | + | Chr5:103808763-103808782 | MsG0580029905.01.T01:CDS | 50.0% | |
! | AACACACAGGCTCGGCTTTT+CGG | + | Chr5:103808177-103808196 | MsG0580029905.01.T01:CDS | 50.0% |
!! | AGCCTGTGTGTTGTTTGGCT+TGG | - | Chr5:103808169-103808188 | None:intergenic | 50.0% |
! | AGCCGAGCCTGTGTGTTGTT+TGG | - | Chr5:103808174-103808193 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 103807947 | 103809417 | 103807947 | ID=MsG0580029905.01;Name=MsG0580029905.01 |
Chr5 | mRNA | 103807947 | 103809417 | 103807947 | ID=MsG0580029905.01.T01;Parent=MsG0580029905.01;Name=MsG0580029905.01.T01;_AED=0.42;_eAED=0.42;_QI=32|1|1|1|1|1|2|122|270 |
Chr5 | exon | 103807947 | 103808198 | 103807947 | ID=MsG0580029905.01.T01:exon:35262;Parent=MsG0580029905.01.T01 |
Chr5 | exon | 103808703 | 103809417 | 103808703 | ID=MsG0580029905.01.T01:exon:35263;Parent=MsG0580029905.01.T01 |
Chr5 | five_prime_UTR | 103807947 | 103807978 | 103807947 | ID=MsG0580029905.01.T01:five_prime_utr;Parent=MsG0580029905.01.T01 |
Chr5 | CDS | 103807979 | 103808198 | 103807979 | ID=MsG0580029905.01.T01:cds;Parent=MsG0580029905.01.T01 |
Chr5 | CDS | 103808703 | 103809295 | 103808703 | ID=MsG0580029905.01.T01:cds;Parent=MsG0580029905.01.T01 |
Chr5 | three_prime_UTR | 103809296 | 103809417 | 103809296 | ID=MsG0580029905.01.T01:three_prime_utr;Parent=MsG0580029905.01.T01 |
Gene Sequence |
Protein sequence |