AlfalfaGEDB | MsG0680031939.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031939.01

KEGG: -
GO: GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031939.01.T01	XP_003615371.2	96.078	102	4	0	72	173	579	680	5.80E-57	201
MsG0680031939.01.T01	XP_003615371.2	75.238	105	19	2	1	105	159	256	1.18E-41	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031939.01.T01	Q9ZUW3	36.364	110	65	2	62	170	672	777	1.48E-15	77

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031939.01.T01	G7K5Z9	96.078	102	4	0	72	173	579	680	2.77e-57	201

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0680031939.01	0.852024	6.055922e-61	1.248732e-57
MsG0080048152.01	MsG0680031939.01	0.805746	1.150368e-49	6.134832e-47
MsG0080048727.01	MsG0680031939.01	0.837406	5.297468e-57	6.873830e-54
MsG0080048773.01	MsG0680031939.01	0.821474	3.960684e-53	3.225426e-50
MsG0080048802.01	MsG0680031939.01	0.852240	5.255183e-61	1.091149e-57
MsG0080048826.01	MsG0680031939.01	0.803249	3.815287e-49	1.907937e-46
MsG0080048849.01	MsG0680031939.01	0.874173	8.303920e-68	3.701210e-64
MsG0080048865.01	MsG0680031939.01	0.804851	1.771733e-49	9.233461e-47
MsG0080048878.01	MsG0680031939.01	0.876962	9.201088e-69	4.547383e-65
MsG0080049011.01	MsG0680031939.01	0.805530	1.276771e-49	6.770607e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031939.01.T01	MTR_5g067140	96.078	102	4	0	72	173	579	680	7.02e-61	201
MsG0680031939.01.T01	MTR_5g067140	75.238	105	19	2	1	105	159	256	1.43e-45	159
MsG0680031939.01.T01	MTR_1g103840	32.558	129	76	3	5	130	258	378	1.47e-15	73.9
MsG0680031939.01.T01	MTR_2g086150	38.384	99	60	1	73	170	679	777	1.96e-15	73.6
MsG0680031939.01.T01	MTR_1g007610	28.218	202	111	3	1	169	377	577	4.88e-15	72.4
MsG0680031939.01.T01	MTR_4g088840	28.643	199	108	5	5	169	302	500	8.60e-14	68.9
MsG0680031939.01.T01	MTR_7g037430	26.368	201	114	4	3	170	663	862	1.69e-13	68.2
MsG0680031939.01.T01	MTR_1g073300	36.364	99	62	1	72	169	606	704	3.04e-13	67.4
MsG0680031939.01.T01	MTR_7g076707	32.520	123	70	3	5	123	293	406	6.31e-13	66.2
MsG0680031939.01.T01	MTR_7g076350	26.368	201	114	4	3	170	398	597	8.30e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031939.01.T01	AT2G27610	36.364	110	65	2	62	170	672	777	1.51e-16	77.0
MsG0680031939.01.T01	AT5G16860	31.538	130	84	2	2	130	209	334	6.83e-14	69.3
MsG0680031939.01.T01	AT4G14850	30.827	133	84	3	42	170	466	594	3.69e-13	67.0
MsG0680031939.01.T01	AT5G09950	25.248	202	116	3	3	169	696	897	4.14e-13	67.0
MsG0680031939.01.T01	AT5G09950	25.248	202	116	3	3	169	702	903	4.26e-13	67.0
MsG0680031939.01.T01	AT5G09950	25.248	202	116	3	3	169	702	903	4.26e-13	67.0
MsG0680031939.01.T01	AT1G25360	35.354	99	63	1	72	169	600	698	4.85e-13	66.6
MsG0680031939.01.T01	AT4G02750	31.068	103	70	1	68	169	588	690	6.90e-13	66.2
MsG0680031939.01.T01	AT2G22070	30.769	130	79	4	4	130	261	382	7.04e-13	66.2
MsG0680031939.01.T01	AT3G24000	34.694	98	63	1	73	169	445	542	1.88e-12	65.1

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Find 25 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGGAGAGTTAAAAGAT+TGG	0.448958	6:+30198899	MsG0680031939.01.T01:CDS
AACAAACGTATAGCATGTTT+TGG	0.297648	6:-30198244	None:intergenic
AAGCCAGGGAATCCAGAATT+GGG	0.516437	6:+30198742	MsG0680031939.01.T01:intron
AAGTTCAATAGGTAAATCAT+TGG	0.535449	6:+30198984	MsG0680031939.01.T01:CDS
ACAATATGACGATGTTTCTA+GGG	0.557983	6:+30198852	MsG0680031939.01.T01:CDS
AGAAACATCGTCATATTGTC+CGG	0.529669	6:-30198848	None:intergenic
AGTTTATACACTAAATGTGG+TGG	0.635862	6:+30198433	MsG0680031939.01.T01:CDS
ATAATGAAAGAAGAGAAAAT+TGG	0.380442	6:+30198883	MsG0680031939.01.T01:CDS
ATAGCAAGAGTGTAATTTGA+AGG	0.508705	6:-30198298	None:intergenic
ATATGACGATGTTTCTAGGG+TGG	0.639941	6:+30198855	MsG0680031939.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTATACACTAAATGTGG+TGG	+	Chr6:30198433-30198452	MsG0680031939.01.T01:CDS	30.0%
ATTTGGTCAAATTTGATTGC+TGG	+	Chr6:30198713-30198732	MsG0680031939.01.T01:intron	30.0%
CATATCAAAGCAAAGAATCT+TGG	+	Chr6:30199015-30199034	MsG0680031939.01.T01:CDS	30.0%
TACTTGTGTCAAAATCAACA+TGG	-	Chr6:30198396-30198415	None:intergenic	30.0%
TATCAACCAAACAAGCATAA+TGG	-	Chr6:30198620-30198639	None:intergenic	30.0%
TTCAATAGGTAAATCATTGG+AGG	+	Chr6:30198987-30199006	MsG0680031939.01.T01:CDS	30.0%
AGAAACATCGTCATATTGTC+CGG	-	Chr6:30198851-30198870	None:intergenic	35.0%
ATGAGGCTAGCAAGTTTATT+TGG	+	Chr6:30198696-30198715	MsG0680031939.01.T01:intron	35.0%
GACAATATGACGATGTTTCT+AGG	+	Chr6:30198851-30198870	MsG0680031939.01.T01:CDS	35.0%
GATATGAGATGTTAGAAGTG+TGG	+	Chr6:30199037-30199056	MsG0680031939.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	30198241	30199065	30198241	ID=MsG0680031939.01;Name=MsG0680031939.01
Chr6	mRNA	30198241	30199065	30198241	ID=MsG0680031939.01.T01;Parent=MsG0680031939.01;Name=MsG0680031939.01.T01;_AED=0.31;_eAED=0.33;_QI=0\|0\|0\|1\|1\|1\|2\|0\|176
Chr6	exon	30198241	30198454	30198241	ID=MsG0680031939.01.T01:exon:15481;Parent=MsG0680031939.01.T01
Chr6	exon	30198749	30199065	30198749	ID=MsG0680031939.01.T01:exon:15480;Parent=MsG0680031939.01.T01
Chr6	CDS	30198241	30198454	30198241	ID=MsG0680031939.01.T01:cds;Parent=MsG0680031939.01.T01
Chr6	CDS	30198749	30199065	30198749	ID=MsG0680031939.01.T01:cds;Parent=MsG0680031939.01.T01

Gene Sequence

>MsG0680031939.01.T01

ATGCCAAAACATGCTATACGTTTGTTTGAAGAGATGCTGTTGCATTCAGAGTGTTACCCTTCAAATTACACTCTTGCTATAGTCGTTAATGCTTGTACATCGTTGCATTCTTTGAAGTTAGGAGAACAGTTACATGCTTACATAATCAAATACCATGTTGATTTTGACACAAGTATCGGCAATGCGCTTTGTAGTTTATACACTAAATGTGGTGGGAATCCAGAATTGGGTTGTGATGCTGCAGAAAAGTTGTTAAGTCTCAAACCAAAAGATACAGAGACATACAAATTGCTGTGGAATGCGTACGTCTCAGCCGGACAATATGACGATGTTTCTAGGGTGGAGAATATAATGAAAGAAGAGAAAATTGGAGAGTTAAAAGATTGGAGCTGGATTAGCATCAAAGACAGAGTGTATTCATTTCAAACAAATGACAAAGCAGACATAGAAAGTTCAATAGGTAAATCATTGGAGGATTTACATATCAAAGCAAAGAATCTTGGATATGAGATGTTAGAAGTGTGGAAATAA

Protein sequence

>MsG0680031939.01.T01

MPKHAIRLFEEMLLHSECYPSNYTLAIVVNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGNPELGCDAAEKLLSLKPKDTETYKLLWNAYVSAGQYDDVSRVENIMKEEKIGELKDWSWISIKDRVYSFQTNDKADIESSIGKSLEDLHIKAKNLGYEMLEVWK*