AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047442.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047442.01.T01 MTR_4g127510 78.610 374 37 3 7 379 51 382 0.0 590
MsG0880047442.01.T01 MTR_2g037770 62.198 373 98 3 7 379 53 382 5.98e-163 462
MsG0880047442.01.T01 MTR_2g037790 58.021 374 113 4 7 379 57 387 5.41e-149 426
MsG0880047442.01.T01 MTR_2g037790 58.021 374 113 4 7 379 54 384 5.94e-149 426
MsG0880047442.01.T01 MTR_4g127490 57.909 373 113 4 7 376 62 393 3.71e-147 422
MsG0880047442.01.T01 MTR_4g127490 57.909 373 113 4 7 376 60 391 4.31e-147 422
MsG0880047442.01.T01 MTR_2g037770 61.034 290 70 3 7 296 53 299 1.73e-117 344
MsG0880047442.01.T01 MTR_2g037770 61.034 290 70 3 7 296 54 300 1.75e-117 344
MsG0880047442.01.T01 MTR_2g037770 60.618 259 59 3 7 265 53 268 4.54e-103 305
MsG0880047442.01.T01 MTR_4g064110 24.058 345 188 10 35 356 111 404 3.38e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047442.01.T01 AT4G25850 48.118 372 150 4 7 377 52 381 5.82e-114 337
MsG0880047442.01.T01 AT5G57240 46.631 371 155 4 7 376 47 375 2.67e-113 335
MsG0880047442.01.T01 AT5G57240 46.631 371 155 4 7 376 47 375 2.67e-113 335
MsG0880047442.01.T01 AT5G57240 46.631 371 155 4 7 376 47 375 2.67e-113 335
MsG0880047442.01.T01 AT4G25850 48.118 372 150 4 7 377 154 483 1.50e-112 337
MsG0880047442.01.T01 AT5G57240 43.687 396 155 5 7 376 47 400 1.55e-107 322
MsG0880047442.01.T01 AT5G57240 43.687 396 155 5 7 376 47 400 1.55e-107 322
MsG0880047442.01.T01 AT4G25860 46.237 372 157 4 7 377 47 376 4.89e-107 320
MsG0880047442.01.T01 AT4G25860 46.237 372 157 4 7 377 53 382 6.89e-107 319
MsG0880047442.01.T01 AT4G25850 47.082 257 94 3 7 262 52 267 1.15e-68 217

Find 107 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGTCAAAAGGGGAAATT+TGG 0.145591 8:+86363083 MsG0880047442.01.T01:CDS
CCACCCTATAATTATTTATC+TGG 0.183577 8:+86363194 MsG0880047442.01.T01:exon
ACTACACGACCACAGAAATT+TGG 0.188123 8:+86360231 MsG0880047442.01.T01:CDS
AGACAATCTTTCTTTGGATT+TGG 0.216954 8:+86362237 MsG0880047442.01.T01:CDS
AGAAATCTGAATAAGAAATT+TGG 0.242852 8:-86362132 None:intergenic
CATATGTCTCTCCATGATTA+TGG 0.251319 8:-86362098 None:intergenic
CTGCTACCAGGCCTGTTTCT+AGG 0.260032 8:-86362200 None:intergenic
GCTCCCTACAATCCCATTCT+TGG 0.262230 8:+86360258 MsG0880047442.01.T01:CDS
TTCCAATTCCTGGTATTGAT+TGG 0.273123 8:+86362154 MsG0880047442.01.T01:CDS
TACACTAGACAATCTTTCTT+TGG 0.278088 8:+86362231 MsG0880047442.01.T01:CDS
GGAAATCGAAGACGGATAAA+AGG 0.297030 8:+86362264 MsG0880047442.01.T01:CDS
GACAATCTTTCTTTGGATTT+GGG 0.297690 8:+86362238 MsG0880047442.01.T01:CDS
TTCAGATTTCTTCCAATTCC+TGG 0.299189 8:+86362144 MsG0880047442.01.T01:CDS
CAACAGAATCAGCTCTTGTT+TGG 0.300730 8:+86362963 MsG0880047442.01.T01:CDS
AACAGAATCAGCTCTTGTTT+GGG 0.304969 8:+86362964 MsG0880047442.01.T01:CDS
AGATCCAGATAAATAATTAT+AGG 0.317722 8:-86363198 None:intergenic
TTTATAACATTGACGGTCAT+TGG 0.319680 8:+86362319 MsG0880047442.01.T01:CDS
TCCAATTCCTGGTATTGATT+GGG 0.344320 8:+86362155 MsG0880047442.01.T01:CDS
GATCCTTAACAAAAGGAGTA+TGG 0.346607 8:-86362743 None:intergenic
TCCCCAATCGTTGCTTATGA+TGG 0.379990 8:-86363002 None:intergenic
AGGGTGGCAATAGGAGCATC+TGG 0.384339 8:-86363178 None:intergenic
GATCCAGATAAATAATTATA+GGG 0.385472 8:-86363197 None:intergenic
AATTAATATGATAAGCATCT+TGG 0.387432 8:+86363285 MsG0880047442.01.T01:three_prime_UTR
ACCCAATCAATACCAGGAAT+TGG 0.388589 8:-86362156 None:intergenic
AATAATTATAGGGTGGCAAT+AGG 0.420289 8:-86363187 None:intergenic
TCTCCACTTCCAAAGTTTGT+TGG 0.426253 8:+86361885 MsG0880047442.01.T01:CDS
ACTATCCGGTGCCTAGAAAC+AGG 0.426852 8:+86362189 MsG0880047442.01.T01:CDS
TGAGTCACTATAAAATGTTT+AGG 0.427110 8:-86363109 None:intergenic
ACAGTTCCAGCCATCTTCAT+TGG 0.435258 8:-86363134 None:intergenic
AATGTTCTTTATAACATTGA+CGG 0.438522 8:+86362312 MsG0880047442.01.T01:CDS
TTATAACATTGACGGTCATT+GGG 0.448664 8:+86362320 MsG0880047442.01.T01:CDS
ATGGTGGGTTTCACCAAGAA+TGG 0.451451 8:-86360271 None:intergenic
TTAGAGAAAGAGAGTCAAAA+GGG 0.454350 8:+86363074 MsG0880047442.01.T01:CDS
AGCCATCATAAGCAACGATT+GGG 0.455090 8:+86363000 MsG0880047442.01.T01:CDS
AGAGTCAAAAGGGGAAATTT+GGG 0.456782 8:+86363084 MsG0880047442.01.T01:CDS
AATCGTTGCTTATGATGGCT+TGG 0.457816 8:-86362997 None:intergenic
CTTAGAGAAAGAGAGTCAAA+AGG 0.461372 8:+86363073 MsG0880047442.01.T01:CDS
CCTTAACGTCTTGCTCGAAC+AGG 0.465737 8:+86360308 MsG0880047442.01.T01:CDS
TCTTTCTTTGGATTTGGGTC+GGG 0.467324 8:+86362243 MsG0880047442.01.T01:CDS
AAAGACAGTTAAATTTGTGC+AGG 0.469821 8:+86361788 MsG0880047442.01.T01:CDS
ATCTTTCTTTGGATTTGGGT+CGG 0.469873 8:+86362242 MsG0880047442.01.T01:CDS
CCACTTGGAACACGAACAAT+GGG 0.469889 8:-86360343 None:intergenic
ACCTCTAGATCCTTAACAAA+AGG 0.474417 8:-86362750 None:intergenic
CAAGTCTACTCCTGTGGCTG+TGG 0.475561 8:-86360139 None:intergenic
TGTCAAGCAACTAGACCAAT+TGG 0.477301 8:+86363310 MsG0880047442.01.T01:three_prime_UTR
TACCATTGAAGCTGTGACTT+AGG 0.485158 8:-86360099 None:intergenic
TTCACCAAGAATGGGATTGT+AGG 0.487044 8:-86360262 None:intergenic
GAAACCCACCATGTTTCTAA+AGG 0.495301 8:+86360282 MsG0880047442.01.T01:CDS
AAACCCACCATGTTTCTAAA+GGG 0.496469 8:+86360283 MsG0880047442.01.T01:CDS
TTACCAACAAACTTTGGAAG+TGG 0.498053 8:-86361888 None:intergenic
TGGTGGGTTTCACCAAGAAT+GGG 0.499357 8:-86360270 None:intergenic
GCAGGTTTCACACCATCCTC+AGG 0.503834 8:+86361806 MsG0880047442.01.T01:CDS
CTGTGACTTAGGCATGTTGA+AGG 0.504962 8:-86360088 None:intergenic
CCTGTTCGAGCAAGACGTTA+AGG 0.505938 8:-86360308 None:intergenic
CCCACTTGGAACACGAACAA+TGG 0.506882 8:-86360344 None:intergenic
AAGCCATCATAAGCAACGAT+TGG 0.513927 8:+86362999 MsG0880047442.01.T01:CDS
TCACCAAGAATGGGATTGTA+GGG 0.514686 8:-86360261 None:intergenic
CTCATACCAATGAAGATGGC+TGG 0.515393 8:+86363128 MsG0880047442.01.T01:CDS
CAACTGCACCTCCATAATCA+TGG 0.525416 8:+86362087 MsG0880047442.01.T01:CDS
TGCCTAAGTCACAGCTTCAA+TGG 0.525691 8:+86360097 MsG0880047442.01.T01:CDS
AAGTCACAGCTTCAATGGTA+TGG 0.534057 8:+86360102 MsG0880047442.01.T01:CDS
GGGTTGGCAATGTCACTATC+CGG 0.534777 8:+86362175 MsG0880047442.01.T01:CDS
GAAATCGAAGACGGATAAAA+GGG 0.537567 8:+86362265 MsG0880047442.01.T01:CDS
TGTGTATATTCCACAGCCAC+AGG 0.543811 8:+86360129 MsG0880047442.01.T01:CDS
ACTGTTCACCAATTCAAAAG+TGG 0.544922 8:+86363152 MsG0880047442.01.T01:CDS
GTGACTCATACCAATGAAGA+TGG 0.549751 8:+86363124 MsG0880047442.01.T01:CDS
ATTCCTGGTATTGATTGGGT+TGG 0.551107 8:+86362159 MsG0880047442.01.T01:CDS
GACTTATATCAGTAGTAGCA+TGG 0.557193 8:+86360199 MsG0880047442.01.T01:CDS
ACATTGACGGTCATTGGGAT+AGG 0.562966 8:+86362325 MsG0880047442.01.T01:CDS
TGTAGCTCAATTCTGCTACC+AGG 0.567744 8:-86362212 None:intergenic
TTTCCATCTGATCAGTGGCA+TGG 0.571356 8:-86361839 None:intergenic
CCAGGCCTGTTTCTAGGCAC+CGG 0.578301 8:-86362194 None:intergenic
AAATTATAAATGCAGGTACA+GGG 0.580423 8:+86362037 MsG0880047442.01.T01:intron
TAAGGTTCCCTTTAGAAACA+TGG 0.582927 8:-86360290 None:intergenic
ATTCCATGCCACTGATCAGA+TGG 0.593014 8:+86361836 MsG0880047442.01.T01:CDS
ACAGAATCAGCTCTTGTTTG+GGG 0.607067 8:+86362965 MsG0880047442.01.T01:CDS
CAAACAAGAGCTGATTCTGT+TGG 0.607912 8:-86362962 None:intergenic
GTTTAGCAAGTCTACTCCTG+TGG 0.609510 8:-86360145 None:intergenic
TTTGTGCCAACACTATTGAG+TGG 0.615078 8:-86361741 None:intergenic
CCGGTGCCTAGAAACAGGCC+TGG 0.615502 8:+86362194 MsG0880047442.01.T01:CDS
CTGTTCACCAATTCAAAAGT+GGG 0.616115 8:+86363153 MsG0880047442.01.T01:CDS
GTTCCCTTTAGAAACATGGT+GGG 0.616437 8:-86360286 None:intergenic
TTGAGTGGACATGAGTACTC+TGG 0.617769 8:-86361726 None:intergenic
CGATTGGGGAAAAGCAAGAG+AGG 0.622181 8:+86363015 MsG0880047442.01.T01:CDS
TCATGTCCACTCAATAGTGT+TGG 0.624549 8:+86361735 MsG0880047442.01.T01:CDS
TTGCTAAACAACATCAACAA+TGG 0.626138 8:+86360159 MsG0880047442.01.T01:CDS
GGGTGGCAATAGGAGCATCT+GGG 0.627495 8:-86363177 None:intergenic
GGTTCCCTTTAGAAACATGG+TGG 0.629919 8:-86360287 None:intergenic
GGGGTAGAAGTTGACATGCA+TGG 0.630449 8:+86362057 MsG0880047442.01.T01:CDS
TGGAACACGAACAATGGGAA+AGG 0.630844 8:-86360338 None:intergenic
AAGAGAGGCAAAGAACACTC+TGG 0.634477 8:+86363030 MsG0880047442.01.T01:CDS
CAAACTTTGGAAGTGGAGAG+TGG 0.635431 8:-86361881 None:intergenic
TTGCCAACCCAATCAATACC+AGG 0.642684 8:-86362162 None:intergenic
TTGGGTCGGGAAATCGAAGA+CGG 0.645859 8:+86362256 MsG0880047442.01.T01:CDS
CCAGATAAATAATTATAGGG+TGG 0.646503 8:-86363194 None:intergenic
TTAGGCATGTTGAAGGTAGG+TGG 0.647292 8:-86360081 None:intergenic
ATGTCTCTCCATGATTATGG+AGG 0.650308 8:-86362095 None:intergenic
GCCATCATAAGCAACGATTG+GGG 0.655456 8:+86363001 MsG0880047442.01.T01:CDS
GACTTAGGCATGTTGAAGGT+AGG 0.658758 8:-86360084 None:intergenic
AATTATAAATGCAGGTACAG+GGG 0.662926 8:+86362038 MsG0880047442.01.T01:intron
TAGAGAAAGAGAGTCAAAAG+GGG 0.666484 8:+86363075 MsG0880047442.01.T01:CDS
GGAGCAAATCCAAATTTCTG+TGG 0.677683 8:-86360240 None:intergenic
AGAGGCAAAGAACACTCTGG+AGG 0.685308 8:+86363033 MsG0880047442.01.T01:CDS
TTGAAGGTAGGTGGTAGCTG+TGG 0.690864 8:-86360072 None:intergenic
GGAATGCAGATACCTGAGGA+TGG 0.705504 8:-86361818 None:intergenic
ACACTCTGGAGGAAACTCAG+AGG 0.724153 8:+86363044 MsG0880047442.01.T01:CDS
GCATGGAATGCAGATACCTG+AGG 0.732347 8:-86361822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTACGTAAATAATATAT+AGG - Chr8:86362604-86362623 None:intergenic 10.0%
!!! AAAAAGAATTTTTTTTTCTT+AGG + Chr8:86360788-86360807 MsG0880047442.01.T01:intron 10.0%
!!! ATTTAAATTTAAAGTGATAA+TGG - Chr8:86360682-86360701 None:intergenic 10.0%
!!! TTTTATTATTATTGATTTTG+AGG - Chr8:86362016-86362035 None:intergenic 10.0%
!! AAAAATGAAAAAGGATATAA+AGG - Chr8:86362852-86362871 None:intergenic 15.0%
!! ACTAGTTAAAGATTAAAAAA+TGG - Chr8:86360880-86360899 None:intergenic 15.0%
!! ACTTAAAATTATAATTCTTG+TGG + Chr8:86361386-86361405 MsG0880047442.01.T01:intron 15.0%
!! ATAAAACAAATTATAAATGC+AGG + Chr8:86362030-86362049 MsG0880047442.01.T01:intron 15.0%
!! TCACATTAAAAAAATGAAAA+AGG - Chr8:86362861-86362880 None:intergenic 15.0%
!!! ACAAGAATTATAATTTTAAG+TGG - Chr8:86361387-86361406 None:intergenic 15.0%
!!! ATTTTATATGATTAGGATTT+AGG - Chr8:86362638-86362657 None:intergenic 15.0%
!!! TATTTTGCTGTTATTTATTT+TGG + Chr8:86360650-86360669 MsG0880047442.01.T01:intron 15.0%
!!! TTTGTATTTTGTTTAAAACT+TGG + Chr8:86360411-86360430 MsG0880047442.01.T01:intron 15.0%
!! AAATTAATTTCGATACTTCA+TGG - Chr8:86361170-86361189 None:intergenic 20.0%
!! AATAACAGCAAAATACATAA+AGG - Chr8:86360645-86360664 None:intergenic 20.0%
!! AATCTTTAACTAGTATCTTA+AGG + Chr8:86360886-86360905 MsG0880047442.01.T01:intron 20.0%
!! AATGTTCTTTATAACATTGA+CGG + Chr8:86362312-86362331 MsG0880047442.01.T01:CDS 20.0%
!! AATTAATATGATAAGCATCT+TGG + Chr8:86363285-86363304 MsG0880047442.01.T01:three_prime_UTR 20.0%
!! AATTAATTTCGATACTTCAT+GGG - Chr8:86361169-86361188 None:intergenic 20.0%
!! AGAAATCTGAATAAGAAATT+TGG - Chr8:86362135-86362154 None:intergenic 20.0%
!! AGATCCAGATAAATAATTAT+AGG - Chr8:86363201-86363220 None:intergenic 20.0%
!! ATATTATATTTGCACATGTT+GGG - Chr8:86361457-86361476 None:intergenic 20.0%
!! GATCCAGATAAATAATTATA+GGG - Chr8:86363200-86363219 None:intergenic 20.0%
!! TACTTATTATCTTTGATATG+AGG + Chr8:86361038-86361057 MsG0880047442.01.T01:intron 20.0%
!!! ACATGATTCAATTTTAGATA+TGG + Chr8:86361336-86361355 MsG0880047442.01.T01:intron 20.0%
!!! AGATTTTAGGTTCAATTTTA+TGG - Chr8:86360551-86360570 None:intergenic 20.0%
!!! AGTTTTGTTCTAACTTTAAA+TGG - Chr8:86360497-86360516 None:intergenic 20.0%
!!! ATTATTATTGATTTTGAGGA+TGG - Chr8:86362012-86362031 None:intergenic 20.0%
!!! CAGCATTATTTTATATGATT+AGG - Chr8:86362645-86362664 None:intergenic 20.0%
!!! TATGCGATTCTTTTTAATTT+AGG - Chr8:86361659-86361678 None:intergenic 20.0%
! AAAATGAAAATGTTCATGCA+TGG + Chr8:86362880-86362899 MsG0880047442.01.T01:intron 25.0%
! AAACAACTAAGTTAAAAGAC+CGG - Chr8:86360390-86360409 None:intergenic 25.0%
! AAATTATAAATGCAGGTACA+GGG + Chr8:86362037-86362056 MsG0880047442.01.T01:intron 25.0%
! ATCATATAAAATAATGCTGC+AGG + Chr8:86362646-86362665 MsG0880047442.01.T01:intron 25.0%
! ATTATAATTCTTGTGGATGA+AGG + Chr8:86361393-86361412 MsG0880047442.01.T01:intron 25.0%
! CAACATGTGCAAATATAATA+TGG + Chr8:86361456-86361475 MsG0880047442.01.T01:intron 25.0%
! CAATATGAAATGTGCTAAAT+AGG + Chr8:86362556-86362575 MsG0880047442.01.T01:intron 25.0%
! CATATTATATTTGCACATGT+TGG - Chr8:86361458-86361477 None:intergenic 25.0%
! CCTATCACTTATACAATAAA+GGG + Chr8:86360741-86360760 MsG0880047442.01.T01:intron 25.0%
! CCTTTATTGTATAAGTGATA+GGG - Chr8:86360743-86360762 None:intergenic 25.0%
! GTATCTTAAGGAAAATTGTT+AGG + Chr8:86360898-86360917 MsG0880047442.01.T01:intron 25.0%
! TCATATAAAATAATGCTGCA+GGG + Chr8:86362647-86362666 MsG0880047442.01.T01:intron 25.0%
! TGAGTCACTATAAAATGTTT+AGG - Chr8:86363112-86363131 None:intergenic 25.0%
! TTAAGATGTATCAACATTGT+AGG + Chr8:86360704-86360723 MsG0880047442.01.T01:intron 25.0%
!! ATAAATGCTTATGCTTTGAA+GGG + Chr8:86360932-86360951 MsG0880047442.01.T01:intron 25.0%
!! CAATACCAAAACATGTTTTT+AGG + Chr8:86362822-86362841 MsG0880047442.01.T01:intron 25.0%
!!! TTAATTTGTTTATACGACCA+TGG + Chr8:86360960-86360979 MsG0880047442.01.T01:intron 25.0%
!!! TTTTGTTTACCAACAAACTT+TGG - Chr8:86361897-86361916 None:intergenic 25.0%
AAAGACAGTTAAATTTGTGC+AGG + Chr8:86361788-86361807 MsG0880047442.01.T01:CDS 30.0%
AAAGCATAAGCATTTATCGT+AGG - Chr8:86360929-86360948 None:intergenic 30.0%
AACAACTAAGTTAAAAGACC+GGG - Chr8:86360389-86360408 None:intergenic 30.0%
AATAATTATAGGGTGGCAAT+AGG - Chr8:86363190-86363209 None:intergenic 30.0%
AATTATAAATGCAGGTACAG+GGG + Chr8:86362038-86362057 MsG0880047442.01.T01:intron 30.0%
AATTCCACAACCAATTTATG+GGG + Chr8:86360469-86360488 MsG0880047442.01.T01:intron 30.0%
AGACAATCTTTCTTTGGATT+TGG + Chr8:86362237-86362256 MsG0880047442.01.T01:CDS 30.0%
AGTTAGAACAAAACTCTGTA+TGG + Chr8:86360502-86360521 MsG0880047442.01.T01:intron 30.0%
CAAATTATAAATGCAGGTAC+AGG + Chr8:86362036-86362055 MsG0880047442.01.T01:intron 30.0%
CAATTCCACAACCAATTTAT+GGG + Chr8:86360468-86360487 MsG0880047442.01.T01:intron 30.0%
CCACCCTATAATTATTTATC+TGG + Chr8:86363194-86363213 MsG0880047442.01.T01:exon 30.0%
CCAGATAAATAATTATAGGG+TGG - Chr8:86363197-86363216 None:intergenic 30.0%
CCCTATCACTTATACAATAA+AGG + Chr8:86360740-86360759 MsG0880047442.01.T01:intron 30.0%
CCCTTTATTGTATAAGTGAT+AGG - Chr8:86360744-86360763 None:intergenic 30.0%
GACAATCTTTCTTTGGATTT+GGG + Chr8:86362238-86362257 MsG0880047442.01.T01:CDS 30.0%
GATAAATGCTTATGCTTTGA+AGG + Chr8:86360931-86360950 MsG0880047442.01.T01:intron 30.0%
TACACTAGACAATCTTTCTT+TGG + Chr8:86362231-86362250 MsG0880047442.01.T01:CDS 30.0%
TTAGAGAAAGAGAGTCAAAA+GGG + Chr8:86363074-86363093 MsG0880047442.01.T01:CDS 30.0%
TTATAACATTGACGGTCATT+GGG + Chr8:86362320-86362339 MsG0880047442.01.T01:CDS 30.0%
TTGCTAAACAACATCAACAA+TGG + Chr8:86360159-86360178 MsG0880047442.01.T01:CDS 30.0%
TTTATAACATTGACGGTCAT+TGG + Chr8:86362319-86362338 MsG0880047442.01.T01:CDS 30.0%
! ATTTAGGATACGATACAACT+AGG - Chr8:86361643-86361662 None:intergenic 30.0%
! GATCACCTAAAAACATGTTT+TGG - Chr8:86362830-86362849 None:intergenic 30.0%
!! ACACTCTAAAACAATACATC+AGG - Chr8:86362938-86362957 None:intergenic 30.0%
!! ATTCATGCCAACTGTTTTAA+AGG + Chr8:86360591-86360610 MsG0880047442.01.T01:intron 30.0%
!! CACTCTAAAACAATACATCA+GGG - Chr8:86362937-86362956 None:intergenic 30.0%
!! TTCATGCCAACTGTTTTAAA+GGG + Chr8:86360592-86360611 MsG0880047442.01.T01:intron 30.0%
!! TTTTGAGGATGGAAAAGTTT+TGG - Chr8:86362001-86362020 None:intergenic 30.0%
!!! ATGCAAAAGAAGTGTTTTCT+GGG + Chr8:86362718-86362737 MsG0880047442.01.T01:CDS 30.0%
!!! CAATTTTATGGTGTCGATTT+TGG - Chr8:86360539-86360558 None:intergenic 30.0%
!!! TGCGCTTTTTTCAAGATTTT+AGG - Chr8:86360564-86360583 None:intergenic 30.0%
ACCTCTAGATCCTTAACAAA+AGG - Chr8:86362753-86362772 None:intergenic 35.0%
ACTGTTCACCAATTCAAAAG+TGG + Chr8:86363152-86363171 MsG0880047442.01.T01:CDS 35.0%
AGAGTCAAAAGGGGAAATTT+GGG + Chr8:86363084-86363103 MsG0880047442.01.T01:CDS 35.0%
ATCTTTCTTTGGATTTGGGT+CGG + Chr8:86362242-86362261 MsG0880047442.01.T01:CDS 35.0%
CATATGTCTCTCCATGATTA+TGG - Chr8:86362101-86362120 None:intergenic 35.0%
CCAATAACCGATTAATTCGA+GGG + Chr8:86360442-86360461 MsG0880047442.01.T01:intron 35.0%
CCAATTCCACAACCAATTTA+TGG + Chr8:86360467-86360486 MsG0880047442.01.T01:intron 35.0%
CCATAAATTGGTTGTGGAAT+TGG - Chr8:86360470-86360489 None:intergenic 35.0%
CTGTTCACCAATTCAAAAGT+GGG + Chr8:86363153-86363172 MsG0880047442.01.T01:CDS 35.0%
CTTAGAGAAAGAGAGTCAAA+AGG + Chr8:86363073-86363092 MsG0880047442.01.T01:CDS 35.0%
GAAATATCTTTGCGTATCTG+TGG - Chr8:86361234-86361253 None:intergenic 35.0%
GAAATCGAAGACGGATAAAA+GGG + Chr8:86362265-86362284 MsG0880047442.01.T01:CDS 35.0%
GACTTATATCAGTAGTAGCA+TGG + Chr8:86360199-86360218 MsG0880047442.01.T01:CDS 35.0%
GATCCTTAACAAAAGGAGTA+TGG - Chr8:86362746-86362765 None:intergenic 35.0%
GTATCCTAGAAAAAGACGAA+GGG + Chr8:86361273-86361292 MsG0880047442.01.T01:intron 35.0%
TAGAGAAAGAGAGTCAAAAG+GGG + Chr8:86363075-86363094 MsG0880047442.01.T01:CDS 35.0%
TCAGGGTAATAGTCACATAT+GGG + Chr8:86360985-86361004 MsG0880047442.01.T01:intron 35.0%
TCCAATAACCGATTAATTCG+AGG + Chr8:86360441-86360460 MsG0880047442.01.T01:intron 35.0%
TGGAATATCGGTATCTGATA+CGG - Chr8:86361132-86361151 None:intergenic 35.0%
TGTCATATCAAGTGTCCATA+CGG - Chr8:86362429-86362448 None:intergenic 35.0%
TTAAATGGAGCCCCATAAAT+TGG - Chr8:86360482-86360501 None:intergenic 35.0%
TTCAGATTTCTTCCAATTCC+TGG + Chr8:86362144-86362163 MsG0880047442.01.T01:CDS 35.0%
TTTCATATTGAAGACGCATC+TGG - Chr8:86362546-86362565 None:intergenic 35.0%
! AAACCCACCATGTTTCTAAA+GGG + Chr8:86360283-86360302 MsG0880047442.01.T01:CDS 35.0%
! AACAGAATCAGCTCTTGTTT+GGG + Chr8:86362964-86362983 MsG0880047442.01.T01:CDS 35.0%
! AATCTTGAAAAAAGCGCACT+CGG + Chr8:86360566-86360585 MsG0880047442.01.T01:intron 35.0%
! ATTGGTTCCCTCGAATTAAT+CGG - Chr8:86360452-86360471 None:intergenic 35.0%
! TAAGGTTCCCTTTAGAAACA+TGG - Chr8:86360293-86360312 None:intergenic 35.0%
! TATGTTTTCCATCTGATCAG+TGG - Chr8:86361847-86361866 None:intergenic 35.0%
! TCCTTTTGTTAAGGATCTAG+AGG + Chr8:86362749-86362768 MsG0880047442.01.T01:CDS 35.0%
! TTACCAACAAACTTTGGAAG+TGG - Chr8:86361891-86361910 None:intergenic 35.0%
! TTTACCCTTCGTCTTTTTCT+AGG - Chr8:86361280-86361299 None:intergenic 35.0%
!! ATGAGACCCTTTAAAACAGT+TGG - Chr8:86360601-86360620 None:intergenic 35.0%
!! CTTTTGACTCTCTTTCTCTA+AGG - Chr8:86363075-86363094 None:intergenic 35.0%
!! GCATATATATCAAGCACTGA+CGG + Chr8:86362403-86362422 MsG0880047442.01.T01:intron 35.0%
!! TCCAATTCCTGGTATTGATT+GGG + Chr8:86362155-86362174 MsG0880047442.01.T01:CDS 35.0%
!! TTCCAATTCCTGGTATTGAT+TGG + Chr8:86362154-86362173 MsG0880047442.01.T01:CDS 35.0%
!!! GATGCAAAAGAAGTGTTTTC+TGG + Chr8:86362717-86362736 MsG0880047442.01.T01:CDS 35.0%
!!! TTTATGGTGTCGATTTTGGT+TGG - Chr8:86360535-86360554 None:intergenic 35.0%
AAAAAACTTGTGGTCCCACT+TGG - Chr8:86360361-86360380 None:intergenic 40.0%
AAGCCATCATAAGCAACGAT+TGG + Chr8:86362999-86363018 MsG0880047442.01.T01:CDS 40.0%
AAGTCACAGCTTCAATGGTA+TGG + Chr8:86360102-86360121 MsG0880047442.01.T01:CDS 40.0%
AATCGTTGCTTATGATGGCT+TGG - Chr8:86363000-86363019 None:intergenic 40.0%
ACCCAATCAATACCAGGAAT+TGG - Chr8:86362159-86362178 None:intergenic 40.0%
ACCGATATTCCACAGATAGT+CGG + Chr8:86361140-86361159 MsG0880047442.01.T01:intron 40.0%
ACTACACGACCACAGAAATT+TGG + Chr8:86360231-86360250 MsG0880047442.01.T01:CDS 40.0%
AGCCATCATAAGCAACGATT+GGG + Chr8:86363000-86363019 MsG0880047442.01.T01:CDS 40.0%
ATCTGGTATCCGACATTGAT+AGG - Chr8:86362529-86362548 None:intergenic 40.0%
ATGTCTCTCCATGATTATGG+AGG - Chr8:86362098-86362117 None:intergenic 40.0%
CAACAGAATCAGCTCTTGTT+TGG + Chr8:86362963-86362982 MsG0880047442.01.T01:CDS 40.0%
CCCTCGAATTAATCGGTTAT+TGG - Chr8:86360445-86360464 None:intergenic 40.0%
CGTATCCTAGAAAAAGACGA+AGG + Chr8:86361272-86361291 MsG0880047442.01.T01:intron 40.0%
GAGAGTCAAAAGGGGAAATT+TGG + Chr8:86363083-86363102 MsG0880047442.01.T01:CDS 40.0%
GGAAATCGAAGACGGATAAA+AGG + Chr8:86362264-86362283 MsG0880047442.01.T01:CDS 40.0%
GGAATATCGGTATCTGATAC+GGG - Chr8:86361131-86361150 None:intergenic 40.0%
GGAGCAAATCCAAATTTCTG+TGG - Chr8:86360243-86360262 None:intergenic 40.0%
GTCAGGGTAATAGTCACATA+TGG + Chr8:86360984-86361003 MsG0880047442.01.T01:intron 40.0%
GTGACTCATACCAATGAAGA+TGG + Chr8:86363124-86363143 MsG0880047442.01.T01:CDS 40.0%
TACCATTGAAGCTGTGACTT+AGG - Chr8:86360102-86360121 None:intergenic 40.0%
TCACCAAGAATGGGATTGTA+GGG - Chr8:86360264-86360283 None:intergenic 40.0%
TCATGTCCACTCAATAGTGT+TGG + Chr8:86361735-86361754 MsG0880047442.01.T01:CDS 40.0%
TCCGACTATCTGTGGAATAT+CGG - Chr8:86361144-86361163 None:intergenic 40.0%
TCTCCACTTCCAAAGTTTGT+TGG + Chr8:86361885-86361904 MsG0880047442.01.T01:CDS 40.0%
TCTTTCTTTGGATTTGGGTC+GGG + Chr8:86362243-86362262 MsG0880047442.01.T01:CDS 40.0%
TGATAGGACAGTGACACATA+TGG - Chr8:86362513-86362532 None:intergenic 40.0%
TGTCAAGCAACTAGACCAAT+TGG + Chr8:86363310-86363329 MsG0880047442.01.T01:three_prime_UTR 40.0%
TGTCACTGTCCTATCAATGT+CGG + Chr8:86362517-86362536 MsG0880047442.01.T01:intron 40.0%
TTCACCAAGAATGGGATTGT+AGG - Chr8:86360265-86360284 None:intergenic 40.0%
TTTGTGCCAACACTATTGAG+TGG - Chr8:86361744-86361763 None:intergenic 40.0%
! ACAGAATCAGCTCTTGTTTG+GGG + Chr8:86362965-86362984 MsG0880047442.01.T01:CDS 40.0%
! CAAACAAGAGCTGATTCTGT+TGG - Chr8:86362965-86362984 None:intergenic 40.0%
! GAAACCCACCATGTTTCTAA+AGG + Chr8:86360282-86360301 MsG0880047442.01.T01:CDS 40.0%
! GCTCCATACTCCTTTTGTTA+AGG + Chr8:86362740-86362759 MsG0880047442.01.T01:CDS 40.0%
! GTTCCCTTTAGAAACATGGT+GGG - Chr8:86360289-86360308 None:intergenic 40.0%
!! ATTCCTGGTATTGATTGGGT+TGG + Chr8:86362159-86362178 MsG0880047442.01.T01:CDS 40.0%
AAGAGAGGCAAAGAACACTC+TGG + Chr8:86363030-86363049 MsG0880047442.01.T01:CDS 45.0%
ACAGTTCCAGCCATCTTCAT+TGG - Chr8:86363137-86363156 None:intergenic 45.0%
ACATTGACGGTCATTGGGAT+AGG + Chr8:86362325-86362344 MsG0880047442.01.T01:CDS 45.0%
ATTCCATGCCACTGATCAGA+TGG + Chr8:86361836-86361855 MsG0880047442.01.T01:CDS 45.0%
CAACTGCACCTCCATAATCA+TGG + Chr8:86362087-86362106 MsG0880047442.01.T01:CDS 45.0%
CCACTTGGAACACGAACAAT+GGG - Chr8:86360346-86360365 None:intergenic 45.0%
CCATTGTTCGTGTTCCAAGT+GGG + Chr8:86360344-86360363 MsG0880047442.01.T01:intron 45.0%
CTCATACCAATGAAGATGGC+TGG + Chr8:86363128-86363147 MsG0880047442.01.T01:CDS 45.0%
CTGTGACTTAGGCATGTTGA+AGG - Chr8:86360091-86360110 None:intergenic 45.0%
GACTTAGGCATGTTGAAGGT+AGG - Chr8:86360087-86360106 None:intergenic 45.0%
GCCATCATAAGCAACGATTG+GGG + Chr8:86363001-86363020 MsG0880047442.01.T01:CDS 45.0%
GTTTAGCAAGTCTACTCCTG+TGG - Chr8:86360148-86360167 None:intergenic 45.0%
TCCCCAATCGTTGCTTATGA+TGG - Chr8:86363005-86363024 None:intergenic 45.0%
TGAGGAAATCCACTCAACAG+TGG + Chr8:86361056-86361075 MsG0880047442.01.T01:intron 45.0%
TGCCTAAGTCACAGCTTCAA+TGG + Chr8:86360097-86360116 MsG0880047442.01.T01:CDS 45.0%
TGGAACACGAACAATGGGAA+AGG - Chr8:86360341-86360360 None:intergenic 45.0%
TGTAGCTCAATTCTGCTACC+AGG - Chr8:86362215-86362234 None:intergenic 45.0%
TGTGTATATTCCACAGCCAC+AGG + Chr8:86360129-86360148 MsG0880047442.01.T01:CDS 45.0%
TTAGGCATGTTGAAGGTAGG+TGG - Chr8:86360084-86360103 None:intergenic 45.0%
TTGAGTGGACATGAGTACTC+TGG - Chr8:86361729-86361748 None:intergenic 45.0%
TTGCCAACCCAATCAATACC+AGG - Chr8:86362165-86362184 None:intergenic 45.0%
TTTATACGACCATGGCGTCA+GGG + Chr8:86360968-86360987 MsG0880047442.01.T01:intron 45.0%
TTTCCATCTGATCAGTGGCA+TGG - Chr8:86361842-86361861 None:intergenic 45.0%
! CAAACTTTGGAAGTGGAGAG+TGG - Chr8:86361884-86361903 None:intergenic 45.0%
! GGTTCCCTTTAGAAACATGG+TGG - Chr8:86360290-86360309 None:intergenic 45.0%
!! ATGGTGGGTTTCACCAAGAA+TGG - Chr8:86360274-86360293 None:intergenic 45.0%
!! TCTGGGACCCACTTTTGAAT+TGG - Chr8:86363163-86363182 None:intergenic 45.0%
!! TGGTGGGTTTCACCAAGAAT+GGG - Chr8:86360273-86360292 None:intergenic 45.0%
!!! CCACAAGTTTTTTCGTCACC+CGG + Chr8:86360368-86360387 MsG0880047442.01.T01:intron 45.0%
ACTATCCGGTGCCTAGAAAC+AGG + Chr8:86362189-86362208 MsG0880047442.01.T01:CDS 50.0%
AGAGGCAAAGAACACTCTGG+AGG + Chr8:86363033-86363052 MsG0880047442.01.T01:CDS 50.0%
ATACGGGTACGATACGTACG+GGG - Chr8:86361689-86361708 None:intergenic 50.0%
CAAGCCACTGCTATGAAGTC+CGG + Chr8:86361084-86361103 MsG0880047442.01.T01:intron 50.0%
CATGGGTATCCGACTATCTG+TGG - Chr8:86361152-86361171 None:intergenic 50.0%
CCCACTTGGAACACGAACAA+TGG - Chr8:86360347-86360366 None:intergenic 50.0%
CCCATTGTTCGTGTTCCAAG+TGG + Chr8:86360343-86360362 MsG0880047442.01.T01:intron 50.0%
CCGGGTGACGAAAAAACTTG+TGG - Chr8:86360371-86360390 None:intergenic 50.0%
CCTGTTCGAGCAAGACGTTA+AGG - Chr8:86360311-86360330 None:intergenic 50.0%
CCTTAACGTCTTGCTCGAAC+AGG + Chr8:86360308-86360327 MsG0880047442.01.T01:CDS 50.0%
CGATTGGGGAAAAGCAAGAG+AGG + Chr8:86363015-86363034 MsG0880047442.01.T01:CDS 50.0%
CTTGTGACACCACTGTTGAG+TGG - Chr8:86361068-86361087 None:intergenic 50.0%
GAAGTCCGGATACTCCAAGA+CGG + Chr8:86361098-86361117 MsG0880047442.01.T01:intron 50.0%
GATACGGGTACGATACGTAC+GGG - Chr8:86361690-86361709 None:intergenic 50.0%
GCATGGAATGCAGATACCTG+AGG - Chr8:86361825-86361844 None:intergenic 50.0%
GCTCCCTACAATCCCATTCT+TGG + Chr8:86360258-86360277 MsG0880047442.01.T01:CDS 50.0%
GGAATGCAGATACCTGAGGA+TGG - Chr8:86361821-86361840 None:intergenic 50.0%
GGAGCCCCATAAATTGGTTG+TGG - Chr8:86360476-86360495 None:intergenic 50.0%
GGATACGGGTACGATACGTA+CGG - Chr8:86361691-86361710 None:intergenic 50.0%
GGGGTAGAAGTTGACATGCA+TGG + Chr8:86362057-86362076 MsG0880047442.01.T01:CDS 50.0%
GTACGTATCGTACCCGTATC+CGG + Chr8:86361690-86361709 MsG0880047442.01.T01:intron 50.0%
GTATCCGGACTTCATAGCAG+TGG - Chr8:86361091-86361110 None:intergenic 50.0%
GTGGATGAAGGTAACGAGAG+AGG + Chr8:86361405-86361424 MsG0880047442.01.T01:intron 50.0%
GTTTATACGACCATGGCGTC+AGG + Chr8:86360967-86360986 MsG0880047442.01.T01:intron 50.0%
TACGTATCGTACCCGTATCC+GGG + Chr8:86361691-86361710 MsG0880047442.01.T01:intron 50.0%
TGACTATTACCCTGACGCCA+TGG - Chr8:86360980-86360999 None:intergenic 50.0%
TTGAAGGTAGGTGGTAGCTG+TGG - Chr8:86360075-86360094 None:intergenic 50.0%
TTGCTATGAAGCCCGGATAC+GGG - Chr8:86361705-86361724 None:intergenic 50.0%
TTGGGTCGGGAAATCGAAGA+CGG + Chr8:86362256-86362275 MsG0880047442.01.T01:CDS 50.0%
! ACACTCTGGAGGAAACTCAG+AGG + Chr8:86363044-86363063 MsG0880047442.01.T01:CDS 50.0%
! CTTGCTATGAAGCCCGGATA+CGG - Chr8:86361706-86361725 None:intergenic 50.0%
! GGGTTGGCAATGTCACTATC+CGG + Chr8:86362175-86362194 MsG0880047442.01.T01:CDS 50.0%
ATACGGGTACGTCTCCGTCT+TGG - Chr8:86361115-86361134 None:intergenic 55.0%
CAAGTCTACTCCTGTGGCTG+TGG - Chr8:86360142-86360161 None:intergenic 55.0%
GCAGGTTTCACACCATCCTC+AGG + Chr8:86361806-86361825 MsG0880047442.01.T01:CDS 55.0%
GTACGATACGTACGGGGATG+CGG - Chr8:86361683-86361702 None:intergenic 55.0%
! CGTCTCCGTCTTGGAGTATC+CGG - Chr8:86361106-86361125 None:intergenic 55.0%
! CTGCTACCAGGCCTGTTTCT+AGG - Chr8:86362203-86362222 None:intergenic 55.0%
!! AGGGTGGCAATAGGAGCATC+TGG - Chr8:86363181-86363200 None:intergenic 55.0%
!! ATCAAGCACTGACGGCCGTA+TGG + Chr8:86362411-86362430 MsG0880047442.01.T01:intron 55.0%
!! CTCTGGCTTGCTATGAAGCC+CGG - Chr8:86361712-86361731 None:intergenic 55.0%
!! GGGTGGCAATAGGAGCATCT+GGG - Chr8:86363180-86363199 None:intergenic 55.0%
!! CCAGGCCTGTTTCTAGGCAC+CGG - Chr8:86362197-86362216 None:intergenic 60.0%
CCGGTGCCTAGAAACAGGCC+TGG + Chr8:86362194-86362213 MsG0880047442.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 86360057 86363334 86360057 ID=MsG0880047442.01;Name=MsG0880047442.01
Chr8 mRNA 86360057 86363334 86360057 ID=MsG0880047442.01.T01;Parent=MsG0880047442.01;Name=MsG0880047442.01.T01;_AED=0.35;_eAED=0.36;_QI=0|0.75|0.6|1|0.75|0.6|5|130|379
Chr8 exon 86360057 86360361 86360057 ID=MsG0880047442.01.T01:exon:34631;Parent=MsG0880047442.01.T01
Chr8 exon 86361722 86361906 86361722 ID=MsG0880047442.01.T01:exon:34632;Parent=MsG0880047442.01.T01
Chr8 exon 86362052 86362346 86362052 ID=MsG0880047442.01.T01:exon:34633;Parent=MsG0880047442.01.T01
Chr8 exon 86362668 86362770 86362668 ID=MsG0880047442.01.T01:exon:34634;Parent=MsG0880047442.01.T01
Chr8 exon 86362953 86363334 86362953 ID=MsG0880047442.01.T01:exon:34635;Parent=MsG0880047442.01.T01
Chr8 CDS 86360057 86360361 86360057 ID=MsG0880047442.01.T01:cds;Parent=MsG0880047442.01.T01
Chr8 CDS 86361722 86361906 86361722 ID=MsG0880047442.01.T01:cds;Parent=MsG0880047442.01.T01
Chr8 CDS 86362052 86362346 86362052 ID=MsG0880047442.01.T01:cds;Parent=MsG0880047442.01.T01
Chr8 CDS 86362668 86362770 86362668 ID=MsG0880047442.01.T01:cds;Parent=MsG0880047442.01.T01
Chr8 CDS 86362953 86363204 86362953 ID=MsG0880047442.01.T01:cds;Parent=MsG0880047442.01.T01
Chr8 three_prime_UTR 86363205 86363334 86363205 ID=MsG0880047442.01.T01:three_prime_utr;Parent=MsG0880047442.01.T01
Gene Sequence

>MsG0880047442.01.T01

ATGTATGTGTATATTCCACAGCTACCACCTACCTTCAACATGCCTAAGTCACAGCTTCAATGGTATGGTGAATGTGTATATTCCACAGCCACAGGAGTAGACTTGCTAAACAACATCAACAATGGCAAAACAGCATTAGATAGACTTATATCAGTAGTAGCATGGAGCATTTCTACTACACGACCACAGAAATTTGGATTTGCTCCCTACAATCCCATTCTTGGTGAAACCCACCATGTTTCTAAAGGGAACCTTAACGTCTTGCTCGAACAGGTATGTTTCCTTTCCCATTGTTCGTGTTCCAACAAGCCAGAGTACTCATGTCCACTCAATAGTGTTGGCACAAATCTGCATAAACTCTTTTTATTTTTAAAGACAGTTAAATTTGTGCAGGTTTCACACCATCCTCAGGTATCTGCATTCCATGCCACTGATCAGATGGAAAACATAGAAATTATAGCGTGCCACTCTCCACTTCCAAAGTTTGTTGGTACAGGGGTAGAAGTTGACATGCATGGTAAACGACAACTGCACCTCCATAATCATGGAGAGACATATGAAATGAATTGTCCAAATTTCTTATTCAGATTTCTTCCAATTCCTGGTATTGATTGGGTTGGCAATGTCACTATCCGGTGCCTAGAAACAGGCCTGGTAGCAGAATTGAGCTACACTAGACAATCTTTCTTTGGATTTGGGTCGGGAAATCGAAGACGGATAAAAGGGAAGATCTTTGATTCATTAACAAAGAATGTTCTTTATAACATTGACGGTCATTGGGATAGGGCTGTAACATTAAAGAATGCAACTAATGCAGAAGTAAGAGTGATATATGATGCAAAAGAAGTGTTTTCTGGGCTCCATACTCCTTTTGTTAAGGATCTAGAGAGTGTGTCGCCAACAGAATCAGCTCTTGTTTGGGGTGAGTTAAGCCAAGCCATCATAAGCAACGATTGGGGAAAAGCAAGAGAGGCAAAGAACACTCTGGAGGAAACTCAGAGGATTCTCCTTAGAGAAAGAGAGTCAAAAGGGGAAATTTGGGTTCCTAAACATTTTATAGTGACTCATACCAATGAAGATGGCTGGAACTGTTCACCAATTCAAAAGTGGGTCCCAGATGCTCCTATTGCCACCCTATAA

Protein sequence

>MsG0880047442.01.T01

MYVYIPQLPPTFNMPKSQLQWYGECVYSTATGVDLLNNINNGKTALDRLISVVAWSISTTRPQKFGFAPYNPILGETHHVSKGNLNVLLEQVCFLSHCSCSNKPEYSCPLNSVGTNLHKLFLFLKTVKFVQVSHHPQVSAFHATDQMENIEIIACHSPLPKFVGTGVEVDMHGKRQLHLHNHGETYEMNCPNFLFRFLPIPGIDWVGNVTIRCLETGLVAELSYTRQSFFGFGSGNRRRIKGKIFDSLTKNVLYNIDGHWDRAVTLKNATNAEVRVIYDAKEVFSGLHTPFVKDLESVSPTESALVWGELSQAIISNDWGKAREAKNTLEETQRILLRERESKGEIWVPKHFIVTHTNEDGWNCSPIQKWVPDAPIATL*