AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034422.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034422.01.T01 MTR_6g088270 66.270 252 54 2 1 221 704 955 1.77e-91 293
MsG0680034422.01.T01 MTR_6g088270 56.463 147 53 2 83 221 571 714 1.86e-43 158
MsG0680034422.01.T01 MTR_6g088270 64.151 53 19 0 1 53 945 997 1.50e-13 71.2
MsG0680034422.01.T01 MTR_2g039790 71.287 101 16 1 120 220 25 112 1.73e-40 138
MsG0680034422.01.T01 MTR_6g488290 63.333 120 24 2 119 238 47 146 1.62e-37 132
MsG0680034422.01.T01 MTR_0428s0020 63.333 120 24 2 119 238 47 146 3.18e-37 132
MsG0680034422.01.T01 MTR_6g088250 75.641 78 19 0 120 197 1265 1342 4.33e-31 122
MsG0680034422.01.T01 MTR_6g084360 86.364 66 9 0 147 212 973 1038 5.24e-29 117
MsG0680034422.01.T01 MTR_6g027070 53.333 105 30 2 116 220 13 98 4.85e-28 105
MsG0680034422.01.T01 MTR_6g027070 82.456 57 10 0 1 57 89 145 1.16e-25 99.8
MsG0680034422.01.T01 MTR_6g087300 38.767 227 100 6 1 212 104 306 1.43e-27 110
MsG0680034422.01.T01 MTR_6g087300 60.938 64 25 0 157 220 50 113 1.73e-19 87.4
MsG0680034422.01.T01 MTR_6g066260 49.351 77 39 0 144 220 3 79 6.55e-18 77.8
MsG0680034422.01.T01 MTR_2g039780 55.714 70 17 1 152 221 62 117 6.80e-16 75.1
MsG0680034422.01.T01 MTR_2g039780 59.259 54 21 1 1 53 107 160 1.60e-11 63.2
MsG0680034422.01.T01 MTR_6g087190 74.359 39 10 0 164 202 15 53 5.49e-13 63.2
MsG0680034422.01.T01 MTR_6g003970 41.935 93 53 1 120 212 31 122 9.50e-13 68.2
MsG0680034422.01.T01 MTR_6g087200 84.615 39 6 0 9 47 1066 1104 6.90e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034422.01.T01 AT4G29060 48.598 321 116 7 1 281 614 925 1.41e-65 221
MsG0680034422.01.T01 AT4G29060 61.538 130 48 1 92 221 497 624 9.98e-45 162
MsG0680034422.01.T01 AT4G29060 45.789 190 98 2 92 281 497 681 2.30e-40 149
MsG0680034422.01.T01 AT4G11120 44.565 92 48 2 120 211 77 165 1.51e-12 67.8

Find 53 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCCTCAGGAGTGTCTT+TGG 0.320407 6:-87409290 None:intergenic
GTTCAATCTCGGAGAGGGTT+TGG 0.344856 6:+87409522 MsG0680034422.01.T01:CDS
GCTTCTGCAGCAGCAGCAGC+AGG 0.357274 6:-87409624 None:intergenic
CGCATGATTCGATATATTCT+AGG 0.357900 6:+87410965 MsG0680034422.01.T01:CDS
TCTTTCACTGGAGTAGTTAC+CGG 0.365022 6:-87409597 None:intergenic
ATTCTAGGTACTCTTGGTTT+CGG 0.368048 6:+87410980 MsG0680034422.01.T01:CDS
CTAGCAGCTGAAGGAAGAAT+TGG 0.376079 6:+87410775 MsG0680034422.01.T01:CDS
CGATATATTCTAGGTACTCT+TGG 0.385073 6:+87410974 MsG0680034422.01.T01:CDS
AAGCAACTAAGAGAAGAAAT+AGG 0.399165 6:+87410637 MsG0680034422.01.T01:CDS
TTACTTTGGTTCCGTCTCCT+TGG 0.418424 6:-87409646 None:intergenic
ATATCGAATCATGCGCTTCA+AGG 0.429544 6:-87410957 None:intergenic
TGGTAACAACATTCTCTACT+TGG 0.432028 6:-87409270 None:intergenic
AACTGTGAAACCGACTTTGC+TGG 0.432996 6:+87410841 MsG0680034422.01.T01:CDS
TTGGGTACAACCTTATCTCT+TGG 0.438496 6:+87411046 MsG0680034422.01.T01:CDS
TCTTTCTTCACAAATTCCTC+AGG 0.442126 6:-87409301 None:intergenic
CGACTTCAGCAGCAAAATCC+TGG 0.452727 6:-87409554 None:intergenic
GGTAACAACATTCTCTACTT+GGG 0.462914 6:-87409269 None:intergenic
AGAAATAGGTGCAGGAATGA+TGG 0.468499 6:+87410651 MsG0680034422.01.T01:CDS
GGATTTACAGTTGCTTGAGC+AGG 0.468680 6:+87409416 MsG0680034422.01.T01:CDS
GAAATCAACGGTAGTGGTCT+CGG 0.473342 6:+87410601 MsG0680034422.01.T01:intron
TGCTGCTGCTGCAGAAGCCA+AGG 0.476936 6:+87409629 MsG0680034422.01.T01:CDS
ACGCATCAATGTTCTAATTG+AGG 0.480136 6:+87410816 MsG0680034422.01.T01:CDS
GATACACAAAATAACTAGAA+TGG 0.480844 6:-87411023 None:intergenic
TCATCCACTGATAAGAAATC+CGG 0.482086 6:+87410748 MsG0680034422.01.T01:CDS
GCAGCAGGCTCCTCTTTCAC+TGG 0.493343 6:-87409609 None:intergenic
ACGATATTTGACTTCAACGC+TGG 0.502439 6:-87411100 None:intergenic
CTCACTTATGCCAGCAAAGT+CGG 0.510321 6:-87410851 None:intergenic
GGGACATGCCGCCACTTGCA+TGG 0.511736 6:-87409248 None:intergenic
AAGTGAGAAATTCAAGGAGT+TGG 0.515569 6:+87410867 MsG0680034422.01.T01:CDS
GTTTAGCAGACCAAGAGATA+AGG 0.516033 6:-87411056 None:intergenic
AATAGATCAAGGATTGTTGA+AGG 0.517499 6:+87409373 MsG0680034422.01.T01:CDS
AACGGAGATAGAAATGCAAA+AGG 0.524297 6:+87409324 MsG0680034422.01.T01:CDS
AACCGAAGCAAAATAGATCA+AGG 0.527437 6:+87409362 MsG0680034422.01.T01:CDS
GGAATTTGTGAAGAAAGAAA+CGG 0.529911 6:+87409306 MsG0680034422.01.T01:CDS
AACAGAAGGTGATCTTGAAA+AGG 0.530288 6:+87410696 MsG0680034422.01.T01:CDS
GTGAGGTTCAATCTCGGAGA+GGG 0.537237 6:+87409517 MsG0680034422.01.T01:intron
GGTAACTACTCCAGTGAAAG+AGG 0.553754 6:+87409599 MsG0680034422.01.T01:CDS
GTAACAACATTCTCTACTTG+GGG 0.553869 6:-87409268 None:intergenic
CTAAGAGAAGAAATAGGTGC+AGG 0.556573 6:+87410643 MsG0680034422.01.T01:CDS
TGGCATAAGTGAGAAATTCA+AGG 0.558631 6:+87410861 MsG0680034422.01.T01:CDS
AAAATAACTAGAATGGATGA+AGG 0.570653 6:-87411016 None:intergenic
TGCTGCAGAAGCCAAGGAGA+CGG 0.573075 6:+87409635 MsG0680034422.01.T01:CDS
AAAGCTCTTGCTGAAACAGA+AGG 0.590129 6:+87410682 MsG0680034422.01.T01:CDS
TCCGGAAAACTAGCAGCTGA+AGG 0.605549 6:+87410766 MsG0680034422.01.T01:CDS
AGGTTTGTGAGGTTCAATCT+CGG 0.617664 6:+87409511 MsG0680034422.01.T01:intron
TGATATAGCCATGCAAGTGG+CGG 0.623095 6:+87409240 None:intergenic
CGATGATATAGCCATGCAAG+TGG 0.640382 6:+87409237 None:intergenic
AGGGTTTGGAAAAGAAAACC+AGG 0.642655 6:+87409536 MsG0680034422.01.T01:CDS
GACAGATAAGGAAAGACTCG+AGG 0.643486 6:+87409395 MsG0680034422.01.T01:CDS
TGTGAGGTTCAATCTCGGAG+AGG 0.653160 6:+87409516 MsG0680034422.01.T01:intron
GGATTGTTGAAGGACAGATA+AGG 0.664515 6:+87409383 MsG0680034422.01.T01:CDS
ACGCTGGATTGAGACAATGT+CGG 0.678380 6:-87411084 None:intergenic
TGTTACCAAAGACACTCCTG+AGG 0.752881 6:+87409285 MsG0680034422.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAACATATATATAAGTA+TGG - Chr6:87410316-87410335 None:intergenic 10.0%
!! AGAAAAATTGTGAAAAATAA+TGG + Chr6:87410536-87410555 MsG0680034422.01.T01:intron 15.0%
!! AGTTATTTAATTACGAAATT+TGG + Chr6:87409698-87409717 MsG0680034422.01.T01:intron 15.0%
!! GAAACTTTAAATTAAGATAA+AGG - Chr6:87409775-87409794 None:intergenic 15.0%
!! AACATATATATAAGTATGGA+GGG - Chr6:87410312-87410331 None:intergenic 20.0%
!! AACTATGGAAATGTAATAAT+GGG - Chr6:87410058-87410077 None:intergenic 20.0%
!! AATATTATCTGAATTGTTCT+TGG + Chr6:87410333-87410352 MsG0680034422.01.T01:intron 20.0%
!! TAAATAACTCACTAACAAAT+AGG - Chr6:87409687-87409706 None:intergenic 20.0%
!! TAACATATATATAAGTATGG+AGG - Chr6:87410313-87410332 None:intergenic 20.0%
!! TAACTATGGAAATGTAATAA+TGG - Chr6:87410059-87410078 None:intergenic 20.0%
!!! ATACTATGTCTTAATTTTGA+TGG - Chr6:87410001-87410020 None:intergenic 20.0%
!!! CTTAATTTAAAGTTTCAAAC+AGG + Chr6:87409779-87409798 MsG0680034422.01.T01:intron 20.0%
!!! TCACTTTTGAATTATACTAA+AGG + Chr6:87410225-87410244 MsG0680034422.01.T01:intron 20.0%
! AAAATAACTAGAATGGATGA+AGG - Chr6:87411019-87411038 None:intergenic 25.0%
! ATTAAATCTTCAGTTCATCA+AGG + Chr6:87409933-87409952 MsG0680034422.01.T01:intron 25.0%
! GAGAAAATACGAAAGTTAAA+AGG + Chr6:87409491-87409510 MsG0680034422.01.T01:intron 25.0%
! GATACACAAAATAACTAGAA+TGG - Chr6:87411026-87411045 None:intergenic 25.0%
!! AAAATGATCAACTAGACTTT+TGG - Chr6:87409904-87409923 None:intergenic 25.0%
!!! CTAGTTATTTTGTGTATCTT+GGG + Chr6:87411028-87411047 MsG0680034422.01.T01:CDS 25.0%
!!! GAAATTTGGTAATTTGTTTC+TGG + Chr6:87409712-87409731 MsG0680034422.01.T01:intron 25.0%
!!! GGTTGTTTTGTTTAAAATGT+AGG + Chr6:87409851-87409870 MsG0680034422.01.T01:intron 25.0%
!!! GTCTAGTTGATCATTTTTAA+AGG + Chr6:87409907-87409926 MsG0680034422.01.T01:intron 25.0%
!!! TCTAGTTATTTTGTGTATCT+TGG + Chr6:87411027-87411046 MsG0680034422.01.T01:CDS 25.0%
AAGCAACTAAGAGAAGAAAT+AGG + Chr6:87410637-87410656 MsG0680034422.01.T01:CDS 30.0%
AATAGATCAAGGATTGTTGA+AGG + Chr6:87409373-87409392 MsG0680034422.01.T01:CDS 30.0%
ATTCATAGAACGACTTACTT+TGG - Chr6:87409663-87409682 None:intergenic 30.0%
GGAATTTGTGAAGAAAGAAA+CGG + Chr6:87409306-87409325 MsG0680034422.01.T01:CDS 30.0%
TAAAAGGAAAAACTACAGCA+GGG + Chr6:87409747-87409766 MsG0680034422.01.T01:intron 30.0%
TATATATAAGTATGGAGGGA+AGG - Chr6:87410308-87410327 None:intergenic 30.0%
TTAGTTGCTTAACCAAAAAG+AGG - Chr6:87410627-87410646 None:intergenic 30.0%
! ATCCTTGATCTATTTTGCTT+CGG - Chr6:87409367-87409386 None:intergenic 30.0%
! GTCATACTTAATCACTGATT+AGG - Chr6:87410375-87410394 None:intergenic 30.0%
AAAAGGAAAAACTACAGCAG+GGG + Chr6:87409748-87409767 MsG0680034422.01.T01:intron 35.0%
AAACTGTAATGTTGTGTTGC+CGG + Chr6:87410579-87410598 MsG0680034422.01.T01:intron 35.0%
AACAGAAGGTGATCTTGAAA+AGG + Chr6:87410696-87410715 MsG0680034422.01.T01:CDS 35.0%
AACCGAAGCAAAATAGATCA+AGG + Chr6:87409362-87409381 MsG0680034422.01.T01:CDS 35.0%
AACGGAGATAGAAATGCAAA+AGG + Chr6:87409324-87409343 MsG0680034422.01.T01:CDS 35.0%
AAGCAGACAATTGCAACTAT+TGG + Chr6:87409469-87409488 MsG0680034422.01.T01:intron 35.0%
AAGTGAGAAATTCAAGGAGT+TGG + Chr6:87410867-87410886 MsG0680034422.01.T01:CDS 35.0%
ACGCATCAATGTTCTAATTG+AGG + Chr6:87410816-87410835 MsG0680034422.01.T01:CDS 35.0%
ATTCTAGGTACTCTTGGTTT+CGG + Chr6:87410980-87410999 MsG0680034422.01.T01:CDS 35.0%
CAAGCATACCTCAGAAAAAA+GGG + Chr6:87410721-87410740 MsG0680034422.01.T01:CDS 35.0%
CGAAAGTTAAAAGGTTTGTG+AGG + Chr6:87409500-87409519 MsG0680034422.01.T01:intron 35.0%
CGATATATTCTAGGTACTCT+TGG + Chr6:87410974-87410993 MsG0680034422.01.T01:CDS 35.0%
CGCATGATTCGATATATTCT+AGG + Chr6:87410965-87410984 MsG0680034422.01.T01:CDS 35.0%
CTAAAAGGAAAAACTACAGC+AGG + Chr6:87409746-87409765 MsG0680034422.01.T01:intron 35.0%
CTGGAAAGCTACATTCTAAA+AGG + Chr6:87409731-87409750 MsG0680034422.01.T01:intron 35.0%
GGTAACAACATTCTCTACTT+GGG - Chr6:87409272-87409291 None:intergenic 35.0%
GTAACAACATTCTCTACTTG+GGG - Chr6:87409271-87409290 None:intergenic 35.0%
GTCATTTCTTCATGTCAAGT+TGG + Chr6:87409830-87409849 MsG0680034422.01.T01:intron 35.0%
TAATGGGAAAAACTACGACA+GGG - Chr6:87410042-87410061 None:intergenic 35.0%
TCATCCACTGATAAGAAATC+CGG + Chr6:87410748-87410767 MsG0680034422.01.T01:CDS 35.0%
TCTTTCTTCACAAATTCCTC+AGG - Chr6:87409304-87409323 None:intergenic 35.0%
TGGCATAAGTGAGAAATTCA+AGG + Chr6:87410861-87410880 MsG0680034422.01.T01:CDS 35.0%
TGGTAACAACATTCTCTACT+TGG - Chr6:87409273-87409292 None:intergenic 35.0%
TTTAATGCAACCCCTAAGAA+AGG - Chr6:87410094-87410113 None:intergenic 35.0%
! ATAATGGGAAAAACTACGAC+AGG - Chr6:87410043-87410062 None:intergenic 35.0%
! CAGAACTACAAGCTTTATCA+GGG + Chr6:87410251-87410270 MsG0680034422.01.T01:intron 35.0%
! GTGTTTTCAAACTGAACATG+TGG - Chr6:87410925-87410944 None:intergenic 35.0%
! TTTTCCGGATTTCTTATCAG+TGG - Chr6:87410755-87410774 None:intergenic 35.0%
AAAGCTCTTGCTGAAACAGA+AGG + Chr6:87410682-87410701 MsG0680034422.01.T01:CDS 40.0%
AATGCAACCCATTGCTCAAA+CGG - Chr6:87410130-87410149 None:intergenic 40.0%
AATGGGAAAAACTACGACAG+GGG - Chr6:87410041-87410060 None:intergenic 40.0%
ACTAAACGTAACCACATGTG+CGG + Chr6:87410497-87410516 MsG0680034422.01.T01:intron 40.0%
AGAAATAGGTGCAGGAATGA+TGG + Chr6:87410651-87410670 MsG0680034422.01.T01:CDS 40.0%
AGGGTTTGGAAAAGAAAACC+AGG + Chr6:87409536-87409555 MsG0680034422.01.T01:CDS 40.0%
AGGTTTGTGAGGTTCAATCT+CGG + Chr6:87409511-87409530 MsG0680034422.01.T01:intron 40.0%
ATAAGTATGGAGGGAAGGTT+CGG - Chr6:87410303-87410322 None:intergenic 40.0%
ATATCGAATCATGCGCTTCA+AGG - Chr6:87410960-87410979 None:intergenic 40.0%
CCAAAGTTGACCTTTCTTAG+GGG + Chr6:87410081-87410100 MsG0680034422.01.T01:intron 40.0%
CCTGATAAAGCTTGTAGTTC+TGG - Chr6:87410253-87410272 None:intergenic 40.0%
CGCACAAACTGCAAAAAAAC+CGG + Chr6:87409578-87409597 MsG0680034422.01.T01:CDS 40.0%
CTAAGAGAAGAAATAGGTGC+AGG + Chr6:87410643-87410662 MsG0680034422.01.T01:CDS 40.0%
GCAAGCATACCTCAGAAAAA+AGG + Chr6:87410720-87410739 MsG0680034422.01.T01:CDS 40.0%
GCCAAAGTTGACCTTTCTTA+GGG + Chr6:87410080-87410099 MsG0680034422.01.T01:intron 40.0%
GGATTGTTGAAGGACAGATA+AGG + Chr6:87409383-87409402 MsG0680034422.01.T01:CDS 40.0%
GGTCAACTTTGGCATAACTA+TGG - Chr6:87410073-87410092 None:intergenic 40.0%
GTTTAGCAGACCAAGAGATA+AGG - Chr6:87411059-87411078 None:intergenic 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - Chr6:87409600-87409619 None:intergenic 40.0%
TGCCAAAGTTGACCTTTCTT+AGG + Chr6:87410079-87410098 MsG0680034422.01.T01:intron 40.0%
TTGGGTACAACCTTATCTCT+TGG + Chr6:87411046-87411065 MsG0680034422.01.T01:CDS 40.0%
! ACGATATTTGACTTCAACGC+TGG - Chr6:87411103-87411122 None:intergenic 40.0%
! CCAGAACTACAAGCTTTATC+AGG + Chr6:87410250-87410269 MsG0680034422.01.T01:intron 40.0%
!! AAATTCCTCAGGAGTGTCTT+TGG - Chr6:87409293-87409312 None:intergenic 40.0%
!! TGAAAGCATCGACACAAACA+CGG + Chr6:87410412-87410431 MsG0680034422.01.T01:intron 40.0%
!!! ATGAGAGACCCTTTTTTCTG+AGG - Chr6:87410732-87410751 None:intergenic 40.0%
!!! CGGTTTTTTTGCAGTTTGTG+CGG - Chr6:87409580-87409599 None:intergenic 40.0%
ACGCTGGATTGAGACAATGT+CGG - Chr6:87411087-87411106 None:intergenic 45.0%
ATGCAACCCATTGCTCAAAC+GGG - Chr6:87410129-87410148 None:intergenic 45.0%
CCCCTAAGAAAGGTCAACTT+TGG - Chr6:87410084-87410103 None:intergenic 45.0%
CTAAACGTAACCACATGTGC+GGG + Chr6:87410498-87410517 MsG0680034422.01.T01:intron 45.0%
CTAGCAGCTGAAGGAAGAAT+TGG + Chr6:87410775-87410794 MsG0680034422.01.T01:CDS 45.0%
CTCACTTATGCCAGCAAAGT+CGG - Chr6:87410854-87410873 None:intergenic 45.0%
GACAGATAAGGAAAGACTCG+AGG + Chr6:87409395-87409414 MsG0680034422.01.T01:CDS 45.0%
GGATTTACAGTTGCTTGAGC+AGG + Chr6:87409416-87409435 MsG0680034422.01.T01:CDS 45.0%
GGTAACTACTCCAGTGAAAG+AGG + Chr6:87409599-87409618 MsG0680034422.01.T01:CDS 45.0%
GTTGTGTTGCCGGAAATCAA+CGG + Chr6:87410589-87410608 MsG0680034422.01.T01:intron 45.0%
TAAGTATGGAGGGAAGGTTC+GGG - Chr6:87410302-87410321 None:intergenic 45.0%
TGCTAACCCGTTTGAGCAAT+GGG + Chr6:87410120-87410139 MsG0680034422.01.T01:intron 45.0%
TGTTACCAAAGACACTCCTG+AGG + Chr6:87409285-87409304 MsG0680034422.01.T01:CDS 45.0%
! AACTGTGAAACCGACTTTGC+TGG + Chr6:87410841-87410860 MsG0680034422.01.T01:CDS 45.0%
! CGACAGGGGTCTTTAACTTA+AGG - Chr6:87410027-87410046 None:intergenic 45.0%
! GAAATCAACGGTAGTGGTCT+CGG + Chr6:87410601-87410620 MsG0680034422.01.T01:intron 45.0%
! TTACTTTGGTTCCGTCTCCT+TGG - Chr6:87409649-87409668 None:intergenic 45.0%
!! AGACCACTACCGTTGATTTC+CGG - Chr6:87410601-87410620 None:intergenic 45.0%
!!! TCCTTCAGCTGCTAGTTTTC+CGG - Chr6:87410770-87410789 None:intergenic 45.0%
ACAACTAACACCCGCACATG+TGG - Chr6:87410511-87410530 None:intergenic 50.0%
CGACTTCAGCAGCAAAATCC+TGG - Chr6:87409557-87409576 None:intergenic 50.0%
GTGAGGTTCAATCTCGGAGA+GGG + Chr6:87409517-87409536 MsG0680034422.01.T01:intron 50.0%
GTGCTAACCCGTTTGAGCAA+TGG + Chr6:87410119-87410138 MsG0680034422.01.T01:intron 50.0%
GTTCAATCTCGGAGAGGGTT+TGG + Chr6:87409522-87409541 MsG0680034422.01.T01:CDS 50.0%
TCCGGAAAACTAGCAGCTGA+AGG + Chr6:87410766-87410785 MsG0680034422.01.T01:CDS 50.0%
TGTGAGGTTCAATCTCGGAG+AGG + Chr6:87409516-87409535 MsG0680034422.01.T01:intron 50.0%
TTGCCGGAAATCAACGGTAG+TGG + Chr6:87410595-87410614 MsG0680034422.01.T01:intron 50.0%
! TAGTGGTCTCGGCCTCTTTT+TGG + Chr6:87410612-87410631 MsG0680034422.01.T01:intron 50.0%
TGCTGCAGAAGCCAAGGAGA+CGG + Chr6:87409635-87409654 MsG0680034422.01.T01:CDS 55.0%
GCAGCAGGCTCCTCTTTCAC+TGG - Chr6:87409612-87409631 None:intergenic 60.0%
TGCTGCTGCTGCAGAAGCCA+AGG + Chr6:87409629-87409648 MsG0680034422.01.T01:CDS 60.0%
GCTTCTGCAGCAGCAGCAGC+AGG - Chr6:87409627-87409646 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 87409250 87411143 87409250 ID=MsG0680034422.01;Name=MsG0680034422.01
Chr6 mRNA 87409250 87411143 87409250 ID=MsG0680034422.01.T01;Parent=MsG0680034422.01;Name=MsG0680034422.01.T01;_AED=0.57;_eAED=0.62;_QI=0|0|0|1|1|1|3|0|289
Chr6 exon 87409250 87409447 87409250 ID=MsG0680034422.01.T01:exon:18296;Parent=MsG0680034422.01.T01
Chr6 exon 87409522 87409664 87409522 ID=MsG0680034422.01.T01:exon:18297;Parent=MsG0680034422.01.T01
Chr6 exon 87410615 87411143 87410615 ID=MsG0680034422.01.T01:exon:18298;Parent=MsG0680034422.01.T01
Chr6 CDS 87409250 87409447 87409250 ID=MsG0680034422.01.T01:cds;Parent=MsG0680034422.01.T01
Chr6 CDS 87409522 87409664 87409522 ID=MsG0680034422.01.T01:cds;Parent=MsG0680034422.01.T01
Chr6 CDS 87410615 87411143 87410615 ID=MsG0680034422.01.T01:cds;Parent=MsG0680034422.01.T01
Gene Sequence

>MsG0680034422.01.T01

ATGCAAGTGGCGGCATGTCCCCAAGTAGAGAATGTTGTTACCAAAGACACTCCTGAGGAATTTGTGAAGAAAGAAACGGAGATAGAAATGCAAAAGGAAGATCTTGCATCAAAACCGAAGCAAAATAGATCAAGGATTGTTGAAGGACAGATAAGGAAAGACTCGAGGATTTACAGTTGCTTGAGCAGGATTAATAAAGTTCAATCTCGGAGAGGGTTTGGAAAAGAAAACCAGGATTTTGCTGCTGAAGTCGCCGCACAAACTGCAAAAAAACCGGTAACTACTCCAGTGAAAGAGGAGCCTGCTGCTGCTGCTGCAGAAGCCAAGGAGACGGAACCAAATGGTCTCGGCCTCTTTTTGGTTAAGCAACTAAGAGAAGAAATAGGTGCAGGAATGATGGACTATCAGAAAGCTCTTGCTGAAACAGAAGGTGATCTTGAAAAGGCGCAAGCATACCTCAGAAAAAAGGGTCTCTCATCCACTGATAAGAAATCCGGAAAACTAGCAGCTGAAGGAAGAATTGGTACATACATTCACGATTCACGCATCAATGTTCTAATTGAGGTGAACTGTGAAACCGACTTTGCTGGCATAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACATGTTCAGTTTGAAAACACAACATATGTCTGCCTTGAAGCGCATGATTCGATATATTCTAGGTACTCTTGGTTTCGGTCTACATTTATATCCTTCATCCATTCTAGTTATTTTGTGTATCTTGGGTACAACCTTATCTCTTGGTCTGCTAAACAACAACCGACATTGTCTCAATCCAGCGTTGAAGTCAAATATCGTCGAGTCGCGAGTAGTGTCTGA
Protein sequence

>MsG0680034422.01.T01

MQVAACPQVENVVTKDTPEEFVKKETEIEMQKEDLASKPKQNRSRIVEGQIRKDSRIYSCLSRINKVQSRRGFGKENQDFAAEVAAQTAKKPVTTPVKEEPAAAAAEAKETEPNGLGLFLVKQLREEIGAGMMDYQKALAETEGDLEKAQAYLRKKGLSSTDKKSGKLAAEGRIGTYIHDSRINVLIEVNCETDFAGISEKFKELVDDLAMQVAACPHVQFENTTYVCLEAHDSIYSRYSWFRSTFISFIHSSYFVYLGYNLISWSAKQQPTLSQSSVEVKYRRVASSV*