Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000364.01.T01 | XP_013465941.1 | 100 | 188 | 0 | 0 | 60 | 247 | 65 | 252 | 8.32E-138 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000364.01.T01 | Q9M2Y6 | 73.797 | 187 | 49 | 0 | 61 | 247 | 75 | 261 | 7.84E-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000364.01.T01 | B7FIL1 | 100.000 | 188 | 0 | 0 | 60 | 247 | 65 | 252 | 3.97e-138 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0180000364.01 | 0.852496 | 4.443403e-61 | 9.302135e-58 |
| MsG0080048058.01 | MsG0180000364.01 | 0.851792 | 7.044849e-61 | 1.442121e-57 |
| MsG0080048383.01 | MsG0180000364.01 | 0.808929 | 2.432366e-50 | 1.408721e-47 |
| MsG0180000001.01 | MsG0180000364.01 | 0.877403 | 6.463663e-69 | 3.246240e-65 |
| MsG0180000144.01 | MsG0180000364.01 | 0.816233 | 6.144353e-52 | 4.329476e-49 |
| MsG0180000364.01 | MsG0180001117.01 | 0.802215 | 6.236122e-49 | 3.037372e-46 |
| MsG0180000364.01 | MsG0180001173.01 | 0.830162 | 3.429550e-55 | 3.584644e-52 |
| MsG0180000364.01 | MsG0180001237.01 | 0.876062 | 1.882032e-68 | 8.996575e-65 |
| MsG0180000364.01 | MsG0180001260.01 | 0.807015 | 6.213967e-50 | 3.423154e-47 |
| MsG0180000364.01 | MsG0180001566.01 | 0.818443 | 1.955047e-52 | 1.463783e-49 |
| MsG0180000364.01 | MsG0180003181.01 | 0.807751 | 4.336491e-50 | 2.435142e-47 |
| MsG0180000364.01 | MsG0180003799.01 | 0.822672 | 2.089637e-53 | 1.760774e-50 |
| MsG0180000364.01 | MsG0180003814.01 | 0.809898 | 1.507268e-50 | 8.957732e-48 |
| MsG0180000364.01 | MsG0180003860.01 | 0.820463 | 6.768485e-53 | 5.359485e-50 |
| MsG0180000364.01 | MsG0180004598.01 | 0.801831 | 7.479598e-49 | 3.607720e-46 |
| MsG0180000364.01 | MsG0180004767.01 | 0.806037 | 9.990150e-50 | 5.367292e-47 |
| MsG0180000364.01 | MsG0180004989.01 | 0.842164 | 3.056999e-58 | 4.594829e-55 |
| MsG0180000364.01 | MsG0180004991.01 | 0.829626 | 4.634182e-55 | 4.768971e-52 |
| MsG0180000364.01 | MsG0180005049.01 | 0.807166 | 5.771983e-50 | 3.192245e-47 |
| MsG0180000364.01 | MsG0180005337.01 | 0.824595 | 7.411386e-54 | 6.595262e-51 |
| MsG0180000364.01 | MsG0180005443.01 | 0.827061 | 1.926135e-54 | 1.839119e-51 |
| MsG0180000364.01 | MsG0180005451.01 | 0.838062 | 3.594985e-57 | 4.760167e-54 |
| MsG0180000364.01 | MsG0180005493.01 | 0.820929 | 5.289392e-53 | 4.242879e-50 |
| MsG0180000364.01 | MsG0180005504.01 | 0.803733 | 3.028555e-49 | 1.533489e-46 |
| MsG0180000364.01 | MsG0280006305.01 | 0.843093 | 1.731781e-58 | 2.679901e-55 |
| MsG0180000364.01 | MsG0280007790.01 | 0.835283 | 1.836134e-56 | 2.235112e-53 |
| MsG0180000364.01 | MsG0280007876.01 | 0.823493 | 1.344390e-53 | 1.159411e-50 |
| MsG0180000364.01 | MsG0280008234.01 | 0.804649 | 1.951610e-49 | 1.011760e-46 |
| MsG0180000364.01 | MsG0280008614.01 | 0.847802 | 9.181844e-60 | 1.650939e-56 |
| MsG0180000364.01 | MsG0280008909.01 | 0.827856 | 1.241480e-54 | 1.213255e-51 |
| MsG0180000364.01 | MsG0280010001.01 | 0.810250 | 1.265301e-50 | 7.589572e-48 |
| MsG0180000364.01 | MsG0280010002.01 | 0.808200 | 3.481239e-50 | 1.978159e-47 |
| MsG0180000364.01 | MsG0280010022.01 | 0.803668 | 3.124053e-49 | 1.579147e-46 |
| MsG0180000364.01 | MsG0280010632.01 | 0.810603 | 1.061772e-50 | 6.428568e-48 |
| MsG0180000364.01 | MsG0280010633.01 | 0.810963 | 8.874805e-51 | 5.425638e-48 |
| MsG0180000364.01 | MsG0280010857.01 | 0.858200 | 9.696821e-63 | 2.455137e-59 |
| MsG0180000364.01 | MsG0280011037.01 | 0.833213 | 6.069301e-56 | 6.942835e-53 |
| MsG0180000364.01 | MsG0280011336.01 | 0.804418 | 2.181340e-49 | 1.124077e-46 |
| MsG0180000364.01 | MsG0380014489.01 | 0.801940 | 7.101857e-49 | 3.434912e-46 |
| MsG0180000364.01 | MsG0380014576.01 | 0.800926 | 1.145733e-48 | 5.401508e-46 |
| MsG0180000364.01 | MsG0380014667.01 | 0.810403 | 1.172722e-50 | 7.062165e-48 |
| MsG0180000364.01 | MsG0380014778.01 | 0.812038 | 5.184251e-51 | 3.260528e-48 |
| MsG0180000364.01 | MsG0380015426.01 | 0.800792 | 1.220680e-48 | 5.734787e-46 |
| MsG0180000364.01 | MsG0380016985.01 | 0.804737 | 1.871007e-49 | 9.722530e-47 |
| MsG0180000364.01 | MsG0380017240.01 | 0.803037 | 4.219577e-49 | 2.098689e-46 |
| MsG0180000364.01 | MsG0380017330.01 | 0.817346 | 3.458684e-52 | 2.512422e-49 |
| MsG0180000364.01 | MsG0380017431.01 | 0.807524 | 4.847388e-50 | 2.705975e-47 |
| MsG0180000364.01 | MsG0380017476.01 | 0.804399 | 2.201205e-49 | 1.133768e-46 |
| MsG0180000364.01 | MsG0380017494.01 | 0.807610 | 4.646239e-50 | 2.599394e-47 |
| MsG0180000364.01 | MsG0380017643.01 | 0.828366 | 9.355747e-55 | 9.279642e-52 |
| MsG0180000364.01 | MsG0380017719.01 | 0.827247 | 1.738499e-54 | 1.669116e-51 |
| MsG0180000364.01 | MsG0380017836.01 | 0.832710 | 8.092494e-56 | 9.119042e-53 |
| MsG0180000364.01 | MsG0380018015.01 | 0.816162 | 6.374244e-52 | 4.482733e-49 |
| MsG0180000364.01 | MsG0480018235.01 | 0.820423 | 6.914142e-53 | 5.468732e-50 |
| MsG0180000364.01 | MsG0480018256.01 | 0.816945 | 4.255496e-52 | 3.057801e-49 |
| MsG0180000364.01 | MsG0480018846.01 | 0.840330 | 9.280230e-58 | 1.317368e-54 |
| MsG0180000364.01 | MsG0480020331.01 | 0.824221 | 9.075840e-54 | 7.989213e-51 |
| MsG0180000364.01 | MsG0480020917.01 | 0.840276 | 9.587572e-58 | 1.358787e-54 |
| MsG0180000364.01 | MsG0480021812.01 | 0.801034 | 1.089451e-48 | 5.150307e-46 |
| MsG0180000364.01 | MsG0480022228.01 | 0.880658 | 4.580094e-70 | 2.604103e-66 |
| MsG0180000364.01 | MsG0480022717.01 | 0.814998 | 1.157619e-51 | 7.885964e-49 |
| MsG0180000364.01 | MsG0480022719.01 | 0.808308 | 3.301026e-50 | 1.881041e-47 |
| MsG0180000364.01 | MsG0480022897.01 | 0.814835 | 1.258571e-51 | 8.535489e-49 |
| MsG0180000364.01 | MsG0480023053.01 | 0.862545 | 4.696544e-64 | 1.380508e-60 |
| MsG0180000364.01 | MsG0480023240.01 | 0.839346 | 1.673941e-57 | 2.305222e-54 |
| MsG0180000364.01 | MsG0480023387.01 | 0.801929 | 7.140042e-49 | 3.452438e-46 |
| MsG0180000364.01 | MsG0480023559.01 | 0.827706 | 1.348847e-54 | 1.312340e-51 |
| MsG0180000364.01 | MsG0480023620.01 | 0.809624 | 1.725679e-50 | 1.018298e-47 |
| MsG0180000364.01 | MsG0480023725.01 | 0.815352 | 9.659458e-52 | 6.644089e-49 |
| MsG0180000364.01 | MsG0480023755.01 | 0.877559 | 5.700930e-69 | 2.878601e-65 |
| MsG0180000364.01 | MsG0480023808.01 | 0.801274 | 9.727548e-49 | 4.626416e-46 |
| MsG0180000364.01 | MsG0480023815.01 | 0.827574 | 1.451172e-54 | 1.406377e-51 |
| MsG0180000364.01 | MsG0580024618.01 | 0.803175 | 3.952512e-49 | 1.972853e-46 |
| MsG0180000364.01 | MsG0580024793.01 | 0.803948 | 2.732117e-49 | 1.391147e-46 |
| MsG0180000364.01 | MsG0580028060.01 | 0.821138 | 4.734353e-53 | 3.819767e-50 |
| MsG0180000364.01 | MsG0580028897.01 | 0.811423 | 7.052914e-51 | 4.364189e-48 |
| MsG0180000364.01 | MsG0580029371.01 | 0.817777 | 2.765852e-52 | 2.033074e-49 |
| MsG0180000364.01 | MsG0580029801.01 | 0.814859 | 1.242862e-51 | 8.434605e-49 |
| MsG0180000364.01 | MsG0580030003.01 | 0.830962 | 2.185286e-55 | 2.338185e-52 |
| MsG0180000364.01 | MsG0580030100.01 | 0.831088 | 2.035126e-55 | 2.185623e-52 |
| MsG0180000364.01 | MsG0680030865.01 | 0.834790 | 2.445172e-56 | 2.932100e-53 |
| MsG0180000364.01 | MsG0680031063.01 | 0.807497 | 4.910899e-50 | 2.739553e-47 |
| MsG0180000364.01 | MsG0680031699.01 | 0.804623 | 1.976570e-49 | 1.023961e-46 |
| MsG0180000364.01 | MsG0680033793.01 | 0.806841 | 6.762778e-50 | 3.708858e-47 |
| MsG0180000364.01 | MsG0680034497.01 | 0.808217 | 3.451433e-50 | 1.962093e-47 |
| MsG0180000364.01 | MsG0680035306.01 | 0.804789 | 1.824760e-49 | 9.494485e-47 |
| MsG0180000364.01 | MsG0780038422.01 | 0.818129 | 2.302265e-52 | 1.708714e-49 |
| MsG0180000364.01 | MsG0780039490.01 | 0.803692 | 3.087458e-49 | 1.561673e-46 |
| MsG0180000364.01 | MsG0780039717.01 | 0.836808 | 7.529959e-57 | 9.595696e-54 |
| MsG0180000364.01 | MsG0780039817.01 | 0.819641 | 1.044066e-52 | 8.079744e-50 |
| MsG0180000364.01 | MsG0780039845.01 | 0.811097 | 8.302981e-51 | 5.093567e-48 |
| MsG0180000364.01 | MsG0780040027.01 | 0.819272 | 1.267294e-52 | 9.706789e-50 |
| MsG0180000364.01 | MsG0780040411.01 | 0.801888 | 7.280931e-49 | 3.517098e-46 |
| MsG0180000364.01 | MsG0780040519.01 | 0.816370 | 5.727442e-52 | 4.050866e-49 |
| MsG0180000364.01 | MsG0780040586.01 | 0.834868 | 2.337260e-56 | 2.809502e-53 |
| MsG0180000364.01 | MsG0780040688.01 | 0.837311 | 5.602370e-57 | 7.248639e-54 |
| MsG0180000364.01 | MsG0780040845.01 | 0.806529 | 7.872018e-50 | 4.282549e-47 |
| MsG0180000364.01 | MsG0780040854.01 | 0.837665 | 4.546395e-57 | 5.947792e-54 |
| MsG0180000364.01 | MsG0780040856.01 | 0.814087 | 1.842205e-51 | 1.224357e-48 |
| MsG0180000364.01 | MsG0780041423.01 | 0.832957 | 7.026815e-56 | 7.976566e-53 |
| MsG0180000364.01 | MsG0880042206.01 | 0.802055 | 6.726513e-49 | 3.263027e-46 |
| MsG0180000364.01 | MsG0880042552.01 | 0.820286 | 7.433924e-53 | 5.857201e-50 |
| MsG0180000364.01 | MsG0880042760.01 | 0.848036 | 7.913169e-60 | 1.433311e-56 |
| MsG0180000364.01 | MsG0880042829.01 | 0.803170 | 3.962010e-49 | 1.977339e-46 |
| MsG0180000364.01 | MsG0880044719.01 | 0.804709 | 1.896869e-49 | 9.848949e-47 |
| MsG0180000364.01 | MsG0880045329.01 | 0.824287 | 8.759850e-54 | 7.725010e-51 |
| MsG0180000364.01 | MsG0880045656.01 | 0.809075 | 2.263296e-50 | 1.316058e-47 |
| MsG0180000364.01 | MsG0880046027.01 | 0.830788 | 2.410637e-55 | 2.566121e-52 |
| MsG0180000364.01 | MsG0880046074.01 | 0.804219 | 2.399788e-49 | 1.230338e-46 |
| MsG0180000364.01 | MsG0880046086.01 | 0.834850 | 2.361778e-56 | 2.837394e-53 |
| MsG0180000364.01 | MsG0880046237.01 | 0.818089 | 2.351797e-52 | 1.743427e-49 |
| MsG0180000364.01 | MsG0880046238.01 | 0.807243 | 5.559331e-50 | 3.080887e-47 |
| MsG0180000364.01 | MsG0880046684.01 | 0.807576 | 4.724121e-50 | 2.640587e-47 |
| MsG0180000364.01 | MsG0880046893.01 | 0.816598 | 5.092358e-52 | 3.624138e-49 |
| MsG0180000364.01 | MsG0880047388.01 | 0.826735 | 2.304175e-54 | 2.179248e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000364.01.T01 | MTR_1g017220 | 100.000 | 188 | 0 | 0 | 60 | 247 | 65 | 252 | 1.01e-141 | 397 |
| MsG0180000364.01.T01 | MTR_2g010540 | 68.108 | 185 | 59 | 0 | 61 | 245 | 76 | 260 | 4.93e-99 | 290 |
| MsG0180000364.01.T01 | MTR_4g097530 | 67.568 | 185 | 59 | 1 | 61 | 245 | 74 | 257 | 8.07e-93 | 274 |
| MsG0180000364.01.T01 | MTR_2g010540 | 69.065 | 139 | 43 | 0 | 61 | 199 | 76 | 214 | 5.06e-70 | 215 |
| MsG0180000364.01.T01 | MTR_3g109730 | 77.953 | 127 | 16 | 4 | 121 | 247 | 11 | 125 | 1.18e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000364.01.T01 | AT3G49720 | 73.797 | 187 | 49 | 0 | 61 | 247 | 75 | 261 | 8.00e-105 | 304 |
| MsG0180000364.01.T01 | AT3G49720 | 73.797 | 187 | 49 | 0 | 61 | 247 | 75 | 261 | 8.00e-105 | 304 |
| MsG0180000364.01.T01 | AT3G49720 | 73.797 | 187 | 49 | 0 | 61 | 247 | 75 | 261 | 8.00e-105 | 304 |
| MsG0180000364.01.T01 | AT5G65810 | 71.658 | 187 | 53 | 0 | 61 | 247 | 72 | 258 | 1.06e-102 | 299 |
Find 63 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGCAGATGTTTCTAAATT+TGG | 0.163117 | 1:+4945007 | MsG0180000364.01.T01:CDS |
| ATTACAAGAGAGAAAGATTT+TGG | 0.176751 | 1:-4944214 | None:intergenic |
| AAGTGGAATATCTGGCATTT+TGG | 0.205441 | 1:-4945309 | None:intergenic |
| ACTACATTATAAGTTGAATT+AGG | 0.247076 | 1:+4945565 | MsG0180000364.01.T01:three_prime_UTR |
| CAATAAAACTCTTCCTGATT+TGG | 0.285100 | 1:+4944276 | MsG0180000364.01.T01:CDS |
| GATGGTTTAGTGATATTTAC+TGG | 0.296086 | 1:+4944313 | MsG0180000364.01.T01:CDS |
| TTTCCTTCAAAGTAACTTAG+AGG | 0.301335 | 1:+4945230 | MsG0180000364.01.T01:CDS |
| GTCGAGATATTGTCCGCTTT+GGG | 0.325957 | 1:-4942785 | None:intergenic |
| TGTCGAGATATTGTCCGCTT+TGG | 0.337422 | 1:-4942786 | None:intergenic |
| TCCATTGCTGTTGTTATATG+AGG | 0.352499 | 1:+4945686 | MsG0180000364.01.T01:three_prime_UTR |
| CAAAAGTGATACACCATCTA+TGG | 0.357242 | 1:-4945467 | None:intergenic |
| CCATATGCTTTCTGTAAAAC+AGG | 0.362663 | 1:-4943998 | None:intergenic |
| ACCTTGGCCTTCTGATTAGT+TGG | 0.376653 | 1:-4944986 | None:intergenic |
| TCAAGTTTCCTCTTCCATAT+AGG | 0.389012 | 1:+4944191 | MsG0180000364.01.T01:CDS |
| TGTCCTTTGCCGCTAAGAAT+TGG | 0.392976 | 1:-4945525 | None:intergenic |
| GTGACTTCAAGTGGAATATC+TGG | 0.393548 | 1:-4945317 | None:intergenic |
| GCTGATACCCTCACCAAATC+AGG | 0.395423 | 1:-4944289 | None:intergenic |
| TCTCCTCTAAGTTACTTTGA+AGG | 0.396518 | 1:-4945233 | None:intergenic |
| TGTGGTACTGCGGTGCTTTG+TGG | 0.397712 | 1:+4942971 | MsG0180000364.01.T01:CDS |
| TTTAGAAACATCTGCTACCT+TGG | 0.407306 | 1:-4945002 | None:intergenic |
| TGATAAATATTCGCCATAGA+TGG | 0.407752 | 1:+4945454 | MsG0180000364.01.T01:three_prime_UTR |
| TGGTTCTATACCCCAGGCTT+CGG | 0.413733 | 1:-4944098 | None:intergenic |
| TGTAATTGTTTCAGATACTC+TGG | 0.424438 | 1:+4944231 | MsG0180000364.01.T01:CDS |
| CGGCAAAGGACATAACGATT+TGG | 0.430678 | 1:+4945536 | MsG0180000364.01.T01:three_prime_UTR |
| GAAGTAAATGACATCTCATT+GGG | 0.436752 | 1:-4942733 | None:intergenic |
| TGAAGTAAATGACATCTCAT+TGG | 0.438714 | 1:-4942734 | None:intergenic |
| AGGAAGATGAAACCGAAGCC+TGG | 0.442655 | 1:+4944086 | MsG0180000364.01.T01:CDS |
| GCATCAAATGCGGTGCTTTG+TGG | 0.454871 | 1:+4942953 | MsG0180000364.01.T01:CDS |
| TCAGCATCCTCTATATCATA+TGG | 0.464095 | 1:-4944118 | None:intergenic |
| GAGACCACATAACAAGTGTC+TGG | 0.486625 | 1:-4944052 | None:intergenic |
| TTTATCAACTCACAAATCAA+TGG | 0.490109 | 1:-4945341 | None:intergenic |
| TTTGAAATACCAATTCTTAG+CGG | 0.492677 | 1:+4945516 | MsG0180000364.01.T01:three_prime_UTR |
| GGAAGATGAAACCGAAGCCT+GGG | 0.497641 | 1:+4944087 | MsG0180000364.01.T01:CDS |
| CTAAGATGAGGAGTGGATCC+TGG | 0.502597 | 1:+4945196 | MsG0180000364.01.T01:CDS |
| TGTGGTCTCTAAATTGCAAA+AGG | 0.503512 | 1:+4944066 | MsG0180000364.01.T01:CDS |
| CGACACGCACATTGCCTCTA+CGG | 0.505900 | 1:-4944162 | None:intergenic |
| TAGGTGATCTATAATTTAAG+TGG | 0.506752 | 1:+4945584 | MsG0180000364.01.T01:three_prime_UTR |
| TATAGAACCATATGATATAG+AGG | 0.516192 | 1:+4944111 | MsG0180000364.01.T01:CDS |
| ATCTATAATTTAAGTGGCAG+TGG | 0.516568 | 1:+4945590 | MsG0180000364.01.T01:three_prime_UTR |
| ATCATATGGTTCTATACCCC+AGG | 0.528710 | 1:-4944104 | None:intergenic |
| ATCAATGGAGTGACTTCAAG+TGG | 0.530196 | 1:-4945326 | None:intergenic |
| AAACGCGAGGGCTCACACAA+AGG | 0.537623 | 1:+4942762 | MsG0180000364.01.T01:CDS |
| AACTCTTCCTGATTTGGTGA+GGG | 0.539875 | 1:+4944282 | MsG0180000364.01.T01:CDS |
| TTGGTGAGGGTATCAGCTGA+TGG | 0.552785 | 1:+4944295 | MsG0180000364.01.T01:CDS |
| AAACTCTTCCTGATTTGGTG+AGG | 0.567840 | 1:+4944281 | MsG0180000364.01.T01:CDS |
| TGATTATTTGTGCAGTGGAG+AGG | 0.568020 | 1:+4943961 | MsG0180000364.01.T01:intron |
| TCCAACTAATCAGAAGGCCA+AGG | 0.581897 | 1:+4944985 | MsG0180000364.01.T01:CDS |
| TCCTCATATAACAACAGCAA+TGG | 0.582523 | 1:-4945687 | None:intergenic |
| CTTCAGGCTAAGATGAGGAG+TGG | 0.587352 | 1:+4945189 | MsG0180000364.01.T01:intron |
| TGGTCCAGACACTTGTTATG+TGG | 0.588659 | 1:+4944048 | MsG0180000364.01.T01:CDS |
| ATACCAATTCTTAGCGGCAA+AGG | 0.591720 | 1:+4945522 | MsG0180000364.01.T01:three_prime_UTR |
| TGTTTCTAAATTTGGAAGAG+CGG | 0.593157 | 1:+4945015 | MsG0180000364.01.T01:CDS |
| GTAAAACAGGAATTGCTCGT+TGG | 0.599584 | 1:-4943985 | None:intergenic |
| CTCATTGGGTTTAAGAGTGT+AGG | 0.614061 | 1:-4942719 | None:intergenic |
| GATGAGGAGTGGATCCTGGT+GGG | 0.642314 | 1:+4945200 | MsG0180000364.01.T01:CDS |
| TGATAAATTGAGTAGCATTG+CGG | 0.665382 | 1:+4945357 | MsG0180000364.01.T01:three_prime_UTR |
| AGATGAGGAGTGGATCCTGG+TGG | 0.665807 | 1:+4945199 | MsG0180000364.01.T01:CDS |
| TGCAAAGCACAAATCCGTAG+AGG | 0.674784 | 1:+4944148 | MsG0180000364.01.T01:CDS |
| GCTCACACAAAGGCCCAAAG+CGG | 0.683358 | 1:+4942772 | MsG0180000364.01.T01:CDS |
| GAAGATGAAACCGAAGCCTG+GGG | 0.688039 | 1:+4944088 | MsG0180000364.01.T01:CDS |
| TGCGGTGCTTTGTGGTACTG+CGG | 0.691150 | 1:+4942961 | MsG0180000364.01.T01:CDS |
| TGAGATTGCTGCATCAAATG+CGG | 0.720904 | 1:+4942943 | MsG0180000364.01.T01:intron |
| CGGACAATATCTCGACAATG+CGG | 0.772302 | 1:+4942792 | MsG0180000364.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTAATAAAAATGGATAA+GGG | + | Chr1:4943671-4943690 | MsG0180000364.01.T01:intron | 15.0% |
| !! | CTGTATTATTACAAAATATA+TGG | - | Chr1:4943923-4943942 | None:intergenic | 15.0% |
| !!! | AAACATAGTTTTAACATAAA+TGG | - | Chr1:4944485-4944504 | None:intergenic | 15.0% |
| !!! | AAGTATGATTAGATATTTTT+TGG | + | Chr1:4944668-4944687 | MsG0180000364.01.T01:intron | 15.0% |
| !!! | AGTATGATTAGATATTTTTT+GGG | + | Chr1:4944669-4944688 | MsG0180000364.01.T01:intron | 15.0% |
| !!! | TTTATTTTGGATCAATAATT+GGG | - | Chr1:4943424-4943443 | None:intergenic | 15.0% |
| !! | AAAAATAAAGTTTACTCAGA+TGG | - | Chr1:4944366-4944385 | None:intergenic | 20.0% |
| !! | AAAATAAAGTTTACTCAGAT+GGG | - | Chr1:4944365-4944384 | None:intergenic | 20.0% |
| !! | AACTTGCATTAAGTTTATTA+CGG | + | Chr1:4944413-4944432 | MsG0180000364.01.T01:intron | 20.0% |
| !! | GATGTTAATAAAAATGGATA+AGG | + | Chr1:4943670-4943689 | MsG0180000364.01.T01:intron | 20.0% |
| !!! | ACTACATTATAAGTTGAATT+AGG | + | Chr1:4945565-4945584 | MsG0180000364.01.T01:three_prime_UTR | 20.0% |
| !!! | ATTGTACTTGGTAAATTTTA+TGG | + | Chr1:4943386-4943405 | MsG0180000364.01.T01:intron | 20.0% |
| !!! | CAAACTATGTTTTCAAATAA+CGG | + | Chr1:4943286-4943305 | MsG0180000364.01.T01:intron | 20.0% |
| !!! | CTTTATTTTGGATCAATAAT+TGG | - | Chr1:4943425-4943444 | None:intergenic | 20.0% |
| !!! | CTTTGAGATGTTAATAAAAA+TGG | + | Chr1:4943664-4943683 | MsG0180000364.01.T01:intron | 20.0% |
| ! | AAAGACTAAGATCTAGAAAA+TGG | + | Chr1:4943441-4943460 | MsG0180000364.01.T01:intron | 25.0% |
| ! | AAATCGTTAAATATTGCGTA+TGG | + | Chr1:4943507-4943526 | MsG0180000364.01.T01:intron | 25.0% |
| ! | AAGACTAAGATCTAGAAAAT+GGG | + | Chr1:4943442-4943461 | MsG0180000364.01.T01:intron | 25.0% |
| ! | AATAAAAATGGATAAGGGTA+GGG | + | Chr1:4943676-4943695 | MsG0180000364.01.T01:intron | 25.0% |
| ! | ATAATCATCTCTTCAAATGA+AGG | + | Chr1:4944959-4944978 | MsG0180000364.01.T01:intron | 25.0% |
| ! | ATTCTTCACTAAAGAAAACT+TGG | + | Chr1:4943250-4943269 | MsG0180000364.01.T01:intron | 25.0% |
| ! | TAATAAAAATGGATAAGGGT+AGG | + | Chr1:4943675-4943694 | MsG0180000364.01.T01:intron | 25.0% |
| ! | TACTAGATATAGCTAATTGT+TGG | - | Chr1:4943873-4943892 | None:intergenic | 25.0% |
| ! | TAGGTGATCTATAATTTAAG+TGG | + | Chr1:4945584-4945603 | MsG0180000364.01.T01:three_prime_UTR | 25.0% |
| ! | TATAGAACCATATGATATAG+AGG | + | Chr1:4944111-4944130 | MsG0180000364.01.T01:CDS | 25.0% |
| ! | TCTGTGATGTCTATATATTT+AGG | + | Chr1:4943357-4943376 | MsG0180000364.01.T01:intron | 25.0% |
| ! | TTAATGCAAGTTTCATGTTA+AGG | - | Chr1:4944405-4944424 | None:intergenic | 25.0% |
| ! | TTAATTATGCTATGGATTCT+AGG | - | Chr1:4943084-4943103 | None:intergenic | 25.0% |
| ! | TTTATCAACTCACAAATCAA+TGG | - | Chr1:4945344-4945363 | None:intergenic | 25.0% |
| !! | ATTACAAGAGAGAAAGATTT+TGG | - | Chr1:4944217-4944236 | None:intergenic | 25.0% |
| !! | TTAGTGAAGAATTCTTTTAC+TGG | - | Chr1:4943242-4943261 | None:intergenic | 25.0% |
| !! | TTTAGGTTCATTATTGTACT+TGG | + | Chr1:4943374-4943393 | MsG0180000364.01.T01:intron | 25.0% |
| !! | TTTGAAATACCAATTCTTAG+CGG | + | Chr1:4945516-4945535 | MsG0180000364.01.T01:three_prime_UTR | 25.0% |
| !! | TTTTTATATACTGCTGATGT+TGG | + | Chr1:4944873-4944892 | MsG0180000364.01.T01:intron | 25.0% |
| !!! | CTAGATCTTAGTCTTTATTT+TGG | - | Chr1:4943437-4943456 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTCAGCTGAGTT+CGG | + | Chr1:4944545-4944564 | MsG0180000364.01.T01:intron | 25.0% |
| !!! | TTTGGTAGTTTTATCAAATG+AGG | - | Chr1:4943728-4943747 | None:intergenic | 25.0% |
| AAATATCCTCTGCTTCAAAA+AGG | - | Chr1:4945108-4945127 | None:intergenic | 30.0% | |
| AAGAGAAAAAATGGAGTGAT+AGG | + | Chr1:4943189-4943208 | MsG0180000364.01.T01:intron | 30.0% | |
| AAGTATTATACAACAACCCT+AGG | + | Chr1:4942839-4942858 | MsG0180000364.01.T01:intron | 30.0% | |
| AATGAACATAATGAGAGGTT+TGG | + | Chr1:4943581-4943600 | MsG0180000364.01.T01:intron | 30.0% | |
| ATATGTCCGTTTCTGATTTA+TGG | - | Chr1:4943536-4943555 | None:intergenic | 30.0% | |
| ATCTATAATTTAAGTGGCAG+TGG | + | Chr1:4945590-4945609 | MsG0180000364.01.T01:three_prime_UTR | 30.0% | |
| ATGTTAATGACAGAGAACAA+AGG | - | Chr1:4943830-4943849 | None:intergenic | 30.0% | |
| CAATAAAACTCTTCCTGATT+TGG | + | Chr1:4944276-4944295 | MsG0180000364.01.T01:CDS | 30.0% | |
| CGATTTCAAAGAATGTATGT+TGG | - | Chr1:4943493-4943512 | None:intergenic | 30.0% | |
| GAAGTAAATGACATCTCATT+GGG | - | Chr1:4942736-4942755 | None:intergenic | 30.0% | |
| GAGAAGTCTTAATTATGCTA+TGG | - | Chr1:4943092-4943111 | None:intergenic | 30.0% | |
| GATGGTTTAGTGATATTTAC+TGG | + | Chr1:4944313-4944332 | MsG0180000364.01.T01:CDS | 30.0% | |
| GTTTGCTTCAAGAGAAAAAA+TGG | + | Chr1:4943180-4943199 | MsG0180000364.01.T01:intron | 30.0% | |
| TAAAGAAAACTTGGCTAAGA+GGG | + | Chr1:4943259-4943278 | MsG0180000364.01.T01:intron | 30.0% | |
| TCACAAATTGTAAGTGACAA+AGG | - | Chr1:4942893-4942912 | None:intergenic | 30.0% | |
| TGAAGTAAATGACATCTCAT+TGG | - | Chr1:4942737-4942756 | None:intergenic | 30.0% | |
| TGAGAAATGAACATAATGAG+AGG | + | Chr1:4943576-4943595 | MsG0180000364.01.T01:intron | 30.0% | |
| TGATAAATATTCGCCATAGA+TGG | + | Chr1:4945454-4945473 | MsG0180000364.01.T01:three_prime_UTR | 30.0% | |
| TGATAAATTGAGTAGCATTG+CGG | + | Chr1:4945357-4945376 | MsG0180000364.01.T01:three_prime_UTR | 30.0% | |
| TGGTTACCATAAATCAGAAA+CGG | + | Chr1:4943527-4943546 | MsG0180000364.01.T01:intron | 30.0% | |
| TGTAATTGTTTCAGATACTC+TGG | + | Chr1:4944231-4944250 | MsG0180000364.01.T01:CDS | 30.0% | |
| TGTTAATGACAGAGAACAAA+GGG | - | Chr1:4943829-4943848 | None:intergenic | 30.0% | |
| TTGGTTTCTTTCTCTTTGTT+TGG | + | Chr1:4943600-4943619 | MsG0180000364.01.T01:intron | 30.0% | |
| TTTCCTTCAAAGTAACTTAG+AGG | + | Chr1:4945230-4945249 | MsG0180000364.01.T01:CDS | 30.0% | |
| ! | AGTGATGCTTATTTCTTTCT+GGG | + | Chr1:4943037-4943056 | MsG0180000364.01.T01:intron | 30.0% |
| ! | ATGCATAAAGTTTTGCATGT+TGG | + | Chr1:4944028-4944047 | MsG0180000364.01.T01:CDS | 30.0% |
| ! | GTAGCAGATGTTTCTAAATT+TGG | + | Chr1:4945007-4945026 | MsG0180000364.01.T01:CDS | 30.0% |
| ! | TATTTGAAGTAGTGTGTTTG+AGG | + | Chr1:4944843-4944862 | MsG0180000364.01.T01:intron | 30.0% |
| ! | TGTTTCTAAATTTGGAAGAG+CGG | + | Chr1:4945015-4945034 | MsG0180000364.01.T01:CDS | 30.0% |
| ! | TTTGGATGTTTAAAATCCAC+TGG | + | Chr1:4943618-4943637 | MsG0180000364.01.T01:intron | 30.0% |
| !!! | AAGAGTTTTATTGAGGTATC+TGG | - | Chr1:4944269-4944288 | None:intergenic | 30.0% |
| !!! | AATCAGGAAGAGTTTTATTG+AGG | - | Chr1:4944276-4944295 | None:intergenic | 30.0% |
| !!! | AGAGTTTTATTGAGGTATCT+GGG | - | Chr1:4944268-4944287 | None:intergenic | 30.0% |
| !!! | TTTTTTCTCTTGAAGCAAAC+AGG | - | Chr1:4943180-4943199 | None:intergenic | 30.0% |
| AAGTCATTGTGTTGGATGAA+TGG | - | Chr1:4943791-4943810 | None:intergenic | 35.0% | |
| ACATAAAGACGCAACTAGTT+TGG | - | Chr1:4943746-4943765 | None:intergenic | 35.0% | |
| AGTTTGAACTAACTGCTAGT+TGG | - | Chr1:4944614-4944633 | None:intergenic | 35.0% | |
| CAAAAGTGATACACCATCTA+TGG | - | Chr1:4945470-4945489 | None:intergenic | 35.0% | |
| CATCCAACACAATGACTTAT+TGG | + | Chr1:4943793-4943812 | MsG0180000364.01.T01:intron | 35.0% | |
| CCATATGCTTTCTGTAAAAC+AGG | - | Chr1:4944001-4944020 | None:intergenic | 35.0% | |
| CTAAAGAAAACTTGGCTAAG+AGG | + | Chr1:4943258-4943277 | MsG0180000364.01.T01:intron | 35.0% | |
| CTACCAATAAGTCATTGTGT+TGG | - | Chr1:4943799-4943818 | None:intergenic | 35.0% | |
| CTTCTGCATCAAAGTAATTC+TGG | - | Chr1:4944510-4944529 | None:intergenic | 35.0% | |
| GCAGTTAGTTCAAACTTCAA+AGG | + | Chr1:4944618-4944637 | MsG0180000364.01.T01:intron | 35.0% | |
| TAGACATCACAGACACAAAT+TGG | - | Chr1:4943350-4943369 | None:intergenic | 35.0% | |
| TAGTTCAAACTTCAAAGGCA+TGG | + | Chr1:4944623-4944642 | MsG0180000364.01.T01:intron | 35.0% | |
| TCAAGTTTCCTCTTCCATAT+AGG | + | Chr1:4944191-4944210 | MsG0180000364.01.T01:CDS | 35.0% | |
| TCAGCATCCTCTATATCATA+TGG | - | Chr1:4944121-4944140 | None:intergenic | 35.0% | |
| TCCTCATATAACAACAGCAA+TGG | - | Chr1:4945690-4945709 | None:intergenic | 35.0% | |
| TGTGGTCTCTAAATTGCAAA+AGG | + | Chr1:4944066-4944085 | MsG0180000364.01.T01:CDS | 35.0% | |
| TGTTTGATACGAGAGAAACT+GGG | + | Chr1:4943136-4943155 | MsG0180000364.01.T01:intron | 35.0% | |
| TTACTGGTAAGTGCATTTCA+TGG | + | Chr1:4944329-4944348 | MsG0180000364.01.T01:intron | 35.0% | |
| TTGGATGAATGGAGAACAAA+GGG | - | Chr1:4943780-4943799 | None:intergenic | 35.0% | |
| TTGTTTGATACGAGAGAAAC+TGG | + | Chr1:4943135-4943154 | MsG0180000364.01.T01:intron | 35.0% | |
| TTTAGAAACATCTGCTACCT+TGG | - | Chr1:4945005-4945024 | None:intergenic | 35.0% | |
| ! | AAGTGGAATATCTGGCATTT+TGG | - | Chr1:4945312-4945331 | None:intergenic | 35.0% |
| ! | AGGTTTTCCAACTAATCAGA+AGG | + | Chr1:4944979-4944998 | MsG0180000364.01.T01:intron | 35.0% |
| ! | CAGTGATGCTTATTTCTTTC+TGG | + | Chr1:4943036-4943055 | MsG0180000364.01.T01:intron | 35.0% |
| ! | GTTTAAAATCCACTGGAGTT+GGG | + | Chr1:4943625-4943644 | MsG0180000364.01.T01:intron | 35.0% |
| ! | TCACAGACACAAATTGGTTT+AGG | - | Chr1:4943344-4943363 | None:intergenic | 35.0% |
| ! | TCCATTGCTGTTGTTATATG+AGG | + | Chr1:4945686-4945705 | MsG0180000364.01.T01:three_prime_UTR | 35.0% |
| ! | TCTCCTCTAAGTTACTTTGA+AGG | - | Chr1:4945236-4945255 | None:intergenic | 35.0% |
| ! | TGTTTAAAATCCACTGGAGT+TGG | + | Chr1:4943624-4943643 | MsG0180000364.01.T01:intron | 35.0% |
| ! | TTTAAAATCCACTGGAGTTG+GGG | + | Chr1:4943626-4943645 | MsG0180000364.01.T01:intron | 35.0% |
| !! | AACTGATTCCTTTTTGCTTC+AGG | + | Chr1:4945173-4945192 | MsG0180000364.01.T01:intron | 35.0% |
| !! | CCTGTTTTACAGAAAGCATA+TGG | + | Chr1:4943998-4944017 | MsG0180000364.01.T01:CDS | 35.0% |
| !! | GAGAAAGATTTTGGCCTATA+TGG | - | Chr1:4944208-4944227 | None:intergenic | 35.0% |
| !! | TACAGATAACTTGTTGATGC+AGG | + | Chr1:4943938-4943957 | MsG0180000364.01.T01:intron | 35.0% |
| !!! | AGTTTTATTGAGGTATCTGG+GGG | - | Chr1:4944266-4944285 | None:intergenic | 35.0% |
| !!! | GAGTTTTATTGAGGTATCTG+GGG | - | Chr1:4944267-4944286 | None:intergenic | 35.0% |
| AAATGGATAAGGGTAGGGAT+AGG | + | Chr1:4943681-4943700 | MsG0180000364.01.T01:intron | 40.0% | |
| AACCACCTTTGATCCTTAAC+AGG | - | Chr1:4944704-4944723 | None:intergenic | 40.0% | |
| AAGGTTGAAGGTCTAAATCG+AGG | - | Chr1:4945089-4945108 | None:intergenic | 40.0% | |
| ACATACAGATACACGACCTA+GGG | - | Chr1:4942858-4942877 | None:intergenic | 40.0% | |
| AGGTTGAAGGTCTAAATCGA+GGG | - | Chr1:4945088-4945107 | None:intergenic | 40.0% | |
| AGTGATAGGAAACTTAGCAG+CGG | + | Chr1:4943203-4943222 | MsG0180000364.01.T01:intron | 40.0% | |
| ATACCAATTCTTAGCGGCAA+AGG | + | Chr1:4945522-4945541 | MsG0180000364.01.T01:three_prime_UTR | 40.0% | |
| ATCAATGGAGTGACTTCAAG+TGG | - | Chr1:4945329-4945348 | None:intergenic | 40.0% | |
| CATCTTAGCCTGAAGCAAAA+AGG | - | Chr1:4945184-4945203 | None:intergenic | 40.0% | |
| CTCTGCTTCAAAAAGGTTGA+AGG | - | Chr1:4945101-4945120 | None:intergenic | 40.0% | |
| GATTATCAGATGTCAGTGAC+AGG | - | Chr1:4944945-4944964 | None:intergenic | 40.0% | |
| GTAAAACAGGAATTGCTCGT+TGG | - | Chr1:4943988-4944007 | None:intergenic | 40.0% | |
| GTGACTTCAAGTGGAATATC+TGG | - | Chr1:4945320-4945339 | None:intergenic | 40.0% | |
| GTTGGATGAATGGAGAACAA+AGG | - | Chr1:4943781-4943800 | None:intergenic | 40.0% | |
| TACAACTTACAACCCCAAGT+GGG | + | Chr1:4944437-4944456 | MsG0180000364.01.T01:intron | 40.0% | |
| TACTTCAGACAAAAACGCGA+GGG | + | Chr1:4942750-4942769 | MsG0180000364.01.T01:CDS | 40.0% | |
| TGAGATTGCTGCATCAAATG+CGG | + | Chr1:4942943-4942962 | MsG0180000364.01.T01:intron | 40.0% | |
| TGATTATTTGTGCAGTGGAG+AGG | + | Chr1:4943961-4943980 | MsG0180000364.01.T01:intron | 40.0% | |
| TGGGAAAATTGCACCTGTTA+AGG | + | Chr1:4944688-4944707 | MsG0180000364.01.T01:intron | 40.0% | |
| TTAAAATCCACTGGAGTTGG+GGG | + | Chr1:4943627-4943646 | MsG0180000364.01.T01:intron | 40.0% | |
| TTACAACTTACAACCCCAAG+TGG | + | Chr1:4944436-4944455 | MsG0180000364.01.T01:intron | 40.0% | |
| TTACTTCAGACAAAAACGCG+AGG | + | Chr1:4942749-4942768 | MsG0180000364.01.T01:CDS | 40.0% | |
| TTGCACCTGTTAAGGATCAA+AGG | + | Chr1:4944696-4944715 | MsG0180000364.01.T01:intron | 40.0% | |
| ! | AATTCTTTTACTGGCGAGTG+AGG | - | Chr1:4943233-4943252 | None:intergenic | 40.0% |
| ! | ATCATATGGTTCTATACCCC+AGG | - | Chr1:4944107-4944126 | None:intergenic | 40.0% |
| ! | ATCTAGTAGCAGTTAGCTTG+CGG | + | Chr1:4943885-4943904 | MsG0180000364.01.T01:intron | 40.0% |
| ! | CCTATAACCTTTTCCCACTT+GGG | - | Chr1:4944453-4944472 | None:intergenic | 40.0% |
| ! | CTATAACCTTTTCCCACTTG+GGG | - | Chr1:4944452-4944471 | None:intergenic | 40.0% |
| ! | CTCATTGGGTTTAAGAGTGT+AGG | - | Chr1:4942722-4942741 | None:intergenic | 40.0% |
| ! | TCCTATAACCTTTTCCCACT+TGG | - | Chr1:4944454-4944473 | None:intergenic | 40.0% |
| ! | TTTTGCTTCAGGCTAAGATG+AGG | + | Chr1:4945184-4945203 | MsG0180000364.01.T01:intron | 40.0% |
| !! | AAACTCTTCCTGATTTGGTG+AGG | + | Chr1:4944281-4944300 | MsG0180000364.01.T01:CDS | 40.0% |
| !! | AACTCTTCCTGATTTGGTGA+GGG | + | Chr1:4944282-4944301 | MsG0180000364.01.T01:CDS | 40.0% |
| !! | GATTTTGGCCTATATGGAAG+AGG | - | Chr1:4944202-4944221 | None:intergenic | 40.0% |
| !!! | CTTCAACCTTTTTGAAGCAG+AGG | + | Chr1:4945099-4945118 | MsG0180000364.01.T01:intron | 40.0% |
| AAATTTGGAAGAGCGGTGAG+TGG | + | Chr1:4945022-4945041 | MsG0180000364.01.T01:intron | 45.0% | |
| AAGGAAAAACTTGACCCACC+AGG | - | Chr1:4945217-4945236 | None:intergenic | 45.0% | |
| AGGCAGCACTAAGCATCAAA+TGG | - | Chr1:4943064-4943083 | None:intergenic | 45.0% | |
| ATCTCGACAATGCGGTGTAA+TGG | + | Chr1:4942800-4942819 | MsG0180000364.01.T01:intron | 45.0% | |
| CACATACAGATACACGACCT+AGG | - | Chr1:4942859-4942878 | None:intergenic | 45.0% | |
| CACCTGTTAAGGATCAAAGG+TGG | + | Chr1:4944699-4944718 | MsG0180000364.01.T01:intron | 45.0% | |
| CCCAAGTGGGAAAAGGTTAT+AGG | + | Chr1:4944450-4944469 | MsG0180000364.01.T01:intron | 45.0% | |
| CGGACAATATCTCGACAATG+CGG | + | Chr1:4942792-4942811 | MsG0180000364.01.T01:CDS | 45.0% | |
| CGGCAAAGGACATAACGATT+TGG | + | Chr1:4945536-4945555 | MsG0180000364.01.T01:three_prime_UTR | 45.0% | |
| GAGACCACATAACAAGTGTC+TGG | - | Chr1:4944055-4944074 | None:intergenic | 45.0% | |
| GAGAGAAACTGGGAGGAATT+TGG | + | Chr1:4943146-4943165 | MsG0180000364.01.T01:intron | 45.0% | |
| GCAGGTGATTATTTGTGCAG+TGG | + | Chr1:4943956-4943975 | MsG0180000364.01.T01:intron | 45.0% | |
| GTCGAGATATTGTCCGCTTT+GGG | - | Chr1:4942788-4942807 | None:intergenic | 45.0% | |
| TAAGGGTAGGGATAGGATGT+AGG | + | Chr1:4943688-4943707 | MsG0180000364.01.T01:intron | 45.0% | |
| TCCAACTAATCAGAAGGCCA+AGG | + | Chr1:4944985-4945004 | MsG0180000364.01.T01:CDS | 45.0% | |
| TGCAAAGCACAAATCCGTAG+AGG | + | Chr1:4944148-4944167 | MsG0180000364.01.T01:CDS | 45.0% | |
| TGTCCTTTGCCGCTAAGAAT+TGG | - | Chr1:4945528-4945547 | None:intergenic | 45.0% | |
| TGTCGAGATATTGTCCGCTT+TGG | - | Chr1:4942789-4942808 | None:intergenic | 45.0% | |
| TTACAACCCCAAGTGGGAAA+AGG | + | Chr1:4944443-4944462 | MsG0180000364.01.T01:intron | 45.0% | |
| TTGATACGAGAGAAACTGGG+AGG | + | Chr1:4943139-4943158 | MsG0180000364.01.T01:intron | 45.0% | |
| ! | ACCTTGGCCTTCTGATTAGT+TGG | - | Chr1:4944989-4945008 | None:intergenic | 45.0% |
| ! | TATTGAGGTATCTGGGGGAA+AGG | - | Chr1:4944261-4944280 | None:intergenic | 45.0% |
| !! | AGTTAGCTTGCGGTTCAAGT+AGG | + | Chr1:4943895-4943914 | MsG0180000364.01.T01:intron | 45.0% |
| !! | CGGTGTAATGGACTTGAGAT+CGG | + | Chr1:4942812-4942831 | MsG0180000364.01.T01:intron | 45.0% |
| !! | CTTTGATGCAGAAGCACTAG+AGG | + | Chr1:4944516-4944535 | MsG0180000364.01.T01:intron | 45.0% |
| !! | TGGTCCAGACACTTGTTATG+TGG | + | Chr1:4944048-4944067 | MsG0180000364.01.T01:CDS | 45.0% |
| AGGAAGATGAAACCGAAGCC+TGG | + | Chr1:4944086-4944105 | MsG0180000364.01.T01:CDS | 50.0% | |
| CTAAGATGAGGAGTGGATCC+TGG | + | Chr1:4945196-4945215 | MsG0180000364.01.T01:CDS | 50.0% | |
| CTTCAGGCTAAGATGAGGAG+TGG | + | Chr1:4945189-4945208 | MsG0180000364.01.T01:intron | 50.0% | |
| GAAGATGAAACCGAAGCCTG+GGG | + | Chr1:4944088-4944107 | MsG0180000364.01.T01:CDS | 50.0% | |
| GCATCAAATGCGGTGCTTTG+TGG | + | Chr1:4942953-4942972 | MsG0180000364.01.T01:CDS | 50.0% | |
| GCTGATACCCTCACCAAATC+AGG | - | Chr1:4944292-4944311 | None:intergenic | 50.0% | |
| GGAAGATGAAACCGAAGCCT+GGG | + | Chr1:4944087-4944106 | MsG0180000364.01.T01:CDS | 50.0% | |
| ! | TGGTTCTATACCCCAGGCTT+CGG | - | Chr1:4944101-4944120 | None:intergenic | 50.0% |
| !! | TTGGTGAGGGTATCAGCTGA+TGG | + | Chr1:4944295-4944314 | MsG0180000364.01.T01:CDS | 50.0% |
| AAACGCGAGGGCTCACACAA+AGG | + | Chr1:4942762-4942781 | MsG0180000364.01.T01:CDS | 55.0% | |
| AAATCCACTGGAGTTGGGGG+TGG | + | Chr1:4943630-4943649 | MsG0180000364.01.T01:intron | 55.0% | |
| AGATGAGGAGTGGATCCTGG+TGG | + | Chr1:4945199-4945218 | MsG0180000364.01.T01:CDS | 55.0% | |
| CGACACGCACATTGCCTCTA+CGG | - | Chr1:4944165-4944184 | None:intergenic | 55.0% | |
| GATGAGGAGTGGATCCTGGT+GGG | + | Chr1:4945200-4945219 | MsG0180000364.01.T01:CDS | 55.0% | |
| GCTCACACAAAGGCCCAAAG+CGG | + | Chr1:4942772-4942791 | MsG0180000364.01.T01:CDS | 55.0% | |
| TGCGGTGCTTTGTGGTACTG+CGG | + | Chr1:4942961-4942980 | MsG0180000364.01.T01:CDS | 55.0% | |
| TGTGGTACTGCGGTGCTTTG+TGG | + | Chr1:4942971-4942990 | MsG0180000364.01.T01:CDS | 55.0% | |
| CACTGGAGTTGGGGGTGGAA+GGG | + | Chr1:4943635-4943654 | MsG0180000364.01.T01:intron | 60.0% | |
| CCACTGGAGTTGGGGGTGGA+AGG | + | Chr1:4943634-4943653 | MsG0180000364.01.T01:intron | 65.0% | |
| CCTTCCACCCCCAACTCCAG+TGG | - | Chr1:4943637-4943656 | None:intergenic | 65.0% | |
| TGGAGTTGGGGGTGGAAGGG+AGG | + | Chr1:4943638-4943657 | MsG0180000364.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 4942709 | 4945730 | 4942709 | ID=MsG0180000364.01;Name=MsG0180000364.01 |
| Chr1 | mRNA | 4942709 | 4945730 | 4942709 | ID=MsG0180000364.01.T01;Parent=MsG0180000364.01;Name=MsG0180000364.01.T01;_AED=0.37;_eAED=0.46;_QI=0|0.5|0.4|1|1|1|5|383|247 |
| Chr1 | exon | 4945195 | 4945730 | 4945195 | ID=MsG0180000364.01.T01:exon:5256;Parent=MsG0180000364.01.T01 |
| Chr1 | exon | 4944981 | 4945036 | 4944981 | ID=MsG0180000364.01.T01:exon:5255;Parent=MsG0180000364.01.T01 |
| Chr1 | exon | 4943976 | 4944334 | 4943976 | ID=MsG0180000364.01.T01:exon:5254;Parent=MsG0180000364.01.T01 |
| Chr1 | exon | 4942947 | 4943017 | 4942947 | ID=MsG0180000364.01.T01:exon:5253;Parent=MsG0180000364.01.T01 |
| Chr1 | exon | 4942709 | 4942813 | 4942709 | ID=MsG0180000364.01.T01:exon:5252;Parent=MsG0180000364.01.T01 |
| Chr1 | CDS | 4942709 | 4942813 | 4942709 | ID=MsG0180000364.01.T01:cds;Parent=MsG0180000364.01.T01 |
| Chr1 | CDS | 4942947 | 4943017 | 4942947 | ID=MsG0180000364.01.T01:cds;Parent=MsG0180000364.01.T01 |
| Chr1 | CDS | 4943976 | 4944334 | 4943976 | ID=MsG0180000364.01.T01:cds;Parent=MsG0180000364.01.T01 |
| Chr1 | CDS | 4944981 | 4945036 | 4944981 | ID=MsG0180000364.01.T01:cds;Parent=MsG0180000364.01.T01 |
| Chr1 | CDS | 4945195 | 4945347 | 4945195 | ID=MsG0180000364.01.T01:cds;Parent=MsG0180000364.01.T01 |
| Chr1 | three_prime_UTR | 4945348 | 4945730 | 4945348 | ID=MsG0180000364.01.T01:three_prime_utr;Parent=MsG0180000364.01.T01 |
| Gene Sequence |
| Protein sequence |
