AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014778.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014778.01.T01 MTR_3g463900 70.443 203 15 3 1 159 1 202 2.45e-86 253
MsG0380014778.01.T01 MTR_3g070500 54.286 175 36 2 27 157 56 230 2.02e-54 173
MsG0380014778.01.T01 MTR_4g073650 42.647 204 70 5 7 165 20 221 2.73e-43 144
MsG0380014778.01.T01 MTR_1g085560 46.707 167 50 4 32 159 82 248 1.79e-37 130
MsG0380014778.01.T01 MTR_7g110980 40.884 181 65 5 21 159 78 258 1.04e-34 123
MsG0380014778.01.T01 MTR_1g117010 44.970 169 52 5 32 159 74 242 2.39e-34 122
MsG0380014778.01.T01 MTR_1g117010 44.970 169 52 5 32 159 74 242 2.39e-34 122
MsG0380014778.01.T01 MTR_4g075290 42.262 168 53 3 33 156 2 169 4.02e-34 119
MsG0380014778.01.T01 MTR_7g116340 40.964 166 54 3 36 157 5 170 3.75e-32 114
MsG0380014778.01.T01 MTR_3g117750 40.113 177 59 4 36 168 13 186 4.98e-32 114
MsG0380014778.01.T01 MTR_8g079690 41.667 168 52 5 36 157 5 172 2.07e-29 111
MsG0380014778.01.T01 MTR_3g070500 46.617 133 27 2 27 115 56 188 1.48e-28 105
MsG0380014778.01.T01 MTR_4g086760 37.430 179 63 7 36 167 5 181 3.73e-25 99.8
MsG0380014778.01.T01 MTR_4g086760 37.430 179 63 7 36 167 5 181 4.81e-25 99.8
MsG0380014778.01.T01 MTR_4g086760 37.430 179 63 7 36 167 5 181 5.26e-25 100
MsG0380014778.01.T01 MTR_8g040180 38.182 165 58 4 37 157 20 184 1.66e-24 95.1
MsG0380014778.01.T01 MTR_7g095750 37.952 166 58 3 37 157 9 174 2.94e-24 99.4
MsG0380014778.01.T01 MTR_3g070500 79.167 48 10 0 27 74 56 103 6.23e-21 85.1
MsG0380014778.01.T01 MTR_3g070500 79.167 48 10 0 27 74 56 103 8.81e-21 84.7
MsG0380014778.01.T01 MTR_1g011980 34.503 171 68 1 31 157 3 173 6.09e-19 84.3
MsG0380014778.01.T01 MTR_3g085705 61.818 55 21 0 92 146 70 124 1.29e-17 75.5
MsG0380014778.01.T01 MTR_2g085075 61.290 62 23 1 92 152 548 609 4.38e-17 79.0
MsG0380014778.01.T01 MTR_7g105220 56.522 46 20 0 91 136 95 140 1.96e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014778.01.T01 AT2G29960 60.099 203 34 4 1 159 1 200 1.03e-71 216
MsG0380014778.01.T01 AT2G29960 60.099 203 34 4 1 159 1 200 1.03e-71 216
MsG0380014778.01.T01 AT2G29960 61.140 193 38 4 1 159 1 190 6.29e-71 213
MsG0380014778.01.T01 AT5G58710 59.563 183 30 3 21 159 21 203 8.38e-67 203
MsG0380014778.01.T01 AT3G55920 47.418 213 49 3 8 157 13 225 1.34e-52 168
MsG0380014778.01.T01 AT4G34960 42.718 206 69 6 5 165 21 222 1.73e-42 142
MsG0380014778.01.T01 AT5G13120 44.693 179 58 5 22 159 77 255 1.46e-39 135
MsG0380014778.01.T01 AT5G13120 44.693 179 58 5 22 159 73 251 1.62e-39 135
MsG0380014778.01.T01 AT3G62030 42.077 183 64 5 19 159 74 256 3.64e-38 132
MsG0380014778.01.T01 AT2G16600 49.650 143 50 3 36 156 6 148 9.86e-38 127
MsG0380014778.01.T01 AT3G62030 44.118 170 57 4 28 159 88 257 1.54e-37 130
MsG0380014778.01.T01 AT3G62030 44.118 170 57 4 28 159 141 310 4.13e-37 130
MsG0380014778.01.T01 AT4G38740 44.848 165 47 3 36 156 5 169 2.81e-36 124
MsG0380014778.01.T01 AT2G16600 42.424 165 51 3 36 156 6 170 1.62e-34 120
MsG0380014778.01.T01 AT2G21130 43.976 166 49 3 36 157 6 171 1.63e-34 120
MsG0380014778.01.T01 AT3G56070 40.964 166 54 3 36 157 5 170 3.20e-32 114
MsG0380014778.01.T01 AT3G56070 40.964 166 54 3 36 157 5 170 3.20e-32 114
MsG0380014778.01.T01 AT4G34870 40.606 165 54 4 36 156 5 169 1.09e-30 110
MsG0380014778.01.T01 AT2G15790 40.223 179 60 6 35 167 4 181 1.63e-28 109
MsG0380014778.01.T01 AT3G63400 40.000 180 63 4 31 165 3 182 3.09e-27 106
MsG0380014778.01.T01 AT3G63400 38.889 180 65 3 31 165 3 182 1.57e-26 105
MsG0380014778.01.T01 AT3G63400 38.889 180 65 3 31 165 3 182 1.57e-26 105
MsG0380014778.01.T01 AT3G63400 38.889 180 65 3 31 165 3 182 1.57e-26 105
MsG0380014778.01.T01 AT2G38730 38.788 165 57 5 37 157 34 198 1.40e-25 98.2
MsG0380014778.01.T01 AT4G34960 38.710 155 47 5 5 115 21 171 7.18e-24 92.8
MsG0380014778.01.T01 AT3G22920 36.747 166 57 6 36 157 5 166 1.70e-19 83.2
MsG0380014778.01.T01 AT3G44600 38.211 123 42 3 49 137 485 607 4.75e-17 78.6
MsG0380014778.01.T01 AT2G36130 58.696 46 19 0 91 136 95 140 4.87e-13 64.3

Find 48 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGATGTTCAGATTGA+TGG 0.308620 3:-59843665 MsG0380014778.01.T01:CDS
AATAAAACTCTTCATTTATC+CGG 0.350735 3:+59837589 None:intergenic
AATTGTGAACCATTGGTATC+AGG 0.357115 3:+59842171 None:intergenic
TGGGAACCTGGATAAGAGAT+AGG 0.359302 3:+59843907 None:intergenic
TTTCCAGGTCGTGTTGTAAT+AGG 0.378640 3:-59843052 MsG0380014778.01.T01:intron
TCCAATTGTGGACCGTCATC+CGG 0.384999 3:+59837613 None:intergenic
TCCGGATGACGGTCCACAAT+TGG 0.392867 3:-59837614 MsG0380014778.01.T01:CDS
TCCAGGGGACGGTCCACAAT+TGG 0.408880 3:-59837638 MsG0380014778.01.T01:CDS
TCCAGGGGACGGTCCACAAT+TGG 0.408880 3:-59837689 MsG0380014778.01.T01:intron
AGCAATCACAACCTTGCTCT+TGG 0.426225 3:+59840480 None:intergenic
CAGATTGATGGAAAGGATGC+AGG 0.430835 3:-59843653 MsG0380014778.01.T01:intron
TTAATTAATGCAGGCAAAGA+AGG 0.437139 3:-59843723 MsG0380014778.01.T01:intron
TCCAATTGTGGACCGTCCCC+TGG 0.438070 3:+59837637 None:intergenic
GGTCTCCATCTCACTGATCC+AGG 0.438830 3:-59837655 MsG0380014778.01.T01:CDS
TGGAAAGGTGCTTTCGGGAA+TGG 0.451229 3:-59840548 MsG0380014778.01.T01:CDS
GAAGGCGAAAGAGGATTTGA+AGG 0.459280 3:-59843705 MsG0380014778.01.T01:CDS
GCAATCACAACCTTGCTCTT+GGG 0.462284 3:+59840481 None:intergenic
CGGAACCCTATCTCTTATCC+AGG 0.475115 3:-59843913 MsG0380014778.01.T01:intron
AACTTCCGAGCTCTTTGCAC+AGG 0.508572 3:-59842905 MsG0380014778.01.T01:CDS
CTAAGATCGATCTCAGTGTT+CGG 0.518474 3:+59844004 None:intergenic
CATTTATCCGGATCCAATTG+TGG 0.518907 3:+59837601 None:intergenic
GGACGGTCCACAATTGGATC+CGG 0.525263 3:-59837632 MsG0380014778.01.T01:CDS
GGACGGTCCACAATTGGATC+CGG 0.525263 3:-59837683 MsG0380014778.01.T01:CDS
GTGAGATGGAGACCGTCATC+CGG 0.526378 3:+59837664 None:intergenic
GCAGGCAAAGAAGGCGAAAG+AGG 0.535933 3:-59843714 MsG0380014778.01.T01:intron
TGACGGTCCACAATTGGATC+CGG 0.544316 3:-59837608 MsG0380014778.01.T01:CDS
TCACAACTGTGACAACTAGC+TGG 0.548760 3:-59842143 MsG0380014778.01.T01:intron
TGATGTTCAGATTGATGGAA+AGG 0.550732 3:-59843660 MsG0380014778.01.T01:CDS
CGTCCCCTGGATCAGTGAGA+TGG 0.554209 3:+59837650 None:intergenic
GCTCACCTGTGCAAAGAGCT+CGG 0.558048 3:+59842900 None:intergenic
TATCTGTTCGATAGGTTGGA+TGG 0.559737 3:-59840586 MsG0380014778.01.T01:intron
CCGTCATCCGGATCCAATTG+TGG 0.567258 3:+59837625 None:intergenic
GGGAACCTGGATAAGAGATA+GGG 0.575131 3:+59843908 None:intergenic
TGTTCGATAGGTTGGATGGA+AGG 0.578646 3:-59840582 MsG0380014778.01.T01:intron
CCACAATTGGATCCGGATGA+CGG 0.581576 3:-59837625 MsG0380014778.01.T01:CDS
CCACAATTGGATCCGGATGA+CGG 0.581576 3:-59837676 MsG0380014778.01.T01:CDS
GTTTACAAGATTGAAGCTGA+AGG 0.584212 3:-59840520 MsG0380014778.01.T01:CDS
CCGTCATCCGGATCCAATTG+TGG 0.585354 3:+59837676 None:intergenic
GTCTCCATCTCACTGATCCA+GGG 0.590433 3:-59837654 MsG0380014778.01.T01:CDS
AGCAAAGCAAAACAAGCCGA+TGG 0.595301 3:-59843976 MsG0380014778.01.T01:exon
AAGGTTGTGATTGCTGATAG+TGG 0.613906 3:-59840472 MsG0380014778.01.T01:intron
AAGTGGCACTCCCAAGAGCA+AGG 0.616632 3:-59840491 MsG0380014778.01.T01:CDS
CATCTCACTGATCCAGGGGA+CGG 0.624604 3:-59837649 MsG0380014778.01.T01:CDS
TTTGAAGGAAGTGACAAACA+AGG 0.637543 3:-59843690 MsG0380014778.01.T01:CDS
TCTCCATCTCACTGATCCAG+GGG 0.652000 3:-59837653 MsG0380014778.01.T01:CDS
AATGCTGGTCCTGATACCAA+TGG 0.652457 3:-59842180 MsG0380014778.01.T01:CDS
GAAGCTGAAGGAAATCAAAG+TGG 0.680132 3:-59840508 MsG0380014778.01.T01:CDS
TAAGAGATAGGGTTCCGAAG+AGG 0.697626 3:+59843919 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATGTAGAAATT+AGG - Chr3:59843456-59843475 MsG0380014778.01.T01:intron 10.0%
!! TATCTTTAATTAGATTAATA+GGG + Chr3:59843404-59843423 None:intergenic 10.0%
!! TTACAAATTGAAATATATTA+TGG - Chr3:59839077-59839096 MsG0380014778.01.T01:intron 10.0%
!! TTATCTTTAATTAGATTAAT+AGG + Chr3:59843405-59843424 None:intergenic 10.0%
!!! AAAATTAACAATTTTTGAAT+GGG + Chr3:59842135-59842154 None:intergenic 10.0%
!!! AATAAATTGGTTAATATTTT+TGG + Chr3:59843098-59843117 None:intergenic 10.0%
!!! TAATAATTTTGTAAATATGA+TGG - Chr3:59842661-59842680 MsG0380014778.01.T01:intron 10.0%
!! AAATTATCCTTATTAACTAT+TGG + Chr3:59840860-59840879 None:intergenic 15.0%
!! AACCAAATAACAAATTTATT+GGG + Chr3:59838326-59838345 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr3:59840859-59840878 MsG0380014778.01.T01:intron 15.0%
!! ATTATTAAAAACATTACCTT+TGG + Chr3:59840304-59840323 None:intergenic 15.0%
!! CAAATATTGGAAAAAATTAT+TGG + Chr3:59842246-59842265 None:intergenic 15.0%
!! CTTCATTTATATTTATATTG+TGG + Chr3:59843759-59843778 None:intergenic 15.0%
!! GAAGATGAAATATAATAAAT+TGG + Chr3:59843111-59843130 None:intergenic 15.0%
!! TAACCAAATAACAAATTTAT+TGG + Chr3:59838327-59838346 None:intergenic 15.0%
!! TATTAAATGTTATTAGGAAA+TGG + Chr3:59839014-59839033 None:intergenic 15.0%
!! TCAAAAAAAGAAACTTTATT+TGG + Chr3:59840328-59840347 None:intergenic 15.0%
!! TCAGTATATTAAATGTTATT+AGG + Chr3:59839020-59839039 None:intergenic 15.0%
!! TGAAGAAAAAATCTTTATAA+AGG + Chr3:59842335-59842354 None:intergenic 15.0%
!!! AACAATTTTTTGGAAAAAAA+TGG - Chr3:59842157-59842176 MsG0380014778.01.T01:CDS 15.0%
!!! ATTTTTTTGTTAATTAATGC+AGG - Chr3:59837904-59837923 MsG0380014778.01.T01:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + Chr3:59840735-59840754 None:intergenic 15.0%
!!! GAAAATTAACAATTTTTGAA+TGG + Chr3:59842136-59842155 None:intergenic 15.0%
!!! TAATTACAATTTGGTTATTT+TGG - Chr3:59838223-59838242 MsG0380014778.01.T01:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + Chr3:59840836-59840855 None:intergenic 15.0%
!!! TATTTTGGTTAATTACAATT+TGG - Chr3:59838214-59838233 MsG0380014778.01.T01:intron 15.0%
!!! TTAATTTTCGAACAATTTTT+TGG - Chr3:59842147-59842166 MsG0380014778.01.T01:CDS 15.0%
!!! TTTTTTTTTTTTACTGAAAG+TGG + Chr3:59843535-59843554 None:intergenic 15.0%
!! AAAAGAAATCATGATAACAT+TGG + Chr3:59839718-59839737 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - Chr3:59840850-59840869 MsG0380014778.01.T01:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + Chr3:59840893-59840912 None:intergenic 20.0%
!! AATTATTATCCAAAATGTCT+AGG + Chr3:59842649-59842668 None:intergenic 20.0%
!! ACAATCATAAACTATATTGA+CGG + Chr3:59838115-59838134 None:intergenic 20.0%
!! AGATCAAGATAAAGAAAAAA+TGG + Chr3:59837752-59837771 None:intergenic 20.0%
!! ATAATCTGAGAAAAAAAATG+TGG - Chr3:59840095-59840114 MsG0380014778.01.T01:intron 20.0%
!! ATGTATTATGACTCAAATAT+TGG + Chr3:59842259-59842278 None:intergenic 20.0%
!! GATCAAGATAAAGAAAAAAT+GGG + Chr3:59837751-59837770 None:intergenic 20.0%
!! TAAAAATCATAATACGTAAG+AGG - Chr3:59843480-59843499 MsG0380014778.01.T01:intron 20.0%
!! TACTTAATACGAAATAAACA+TGG - Chr3:59842794-59842813 MsG0380014778.01.T01:intron 20.0%
!! TATGAATTTGTAATTGTGTT+TGG - Chr3:59837865-59837884 MsG0380014778.01.T01:intron 20.0%
!! TCAAAATCTCTGTATATTAT+TGG - Chr3:59838648-59838667 MsG0380014778.01.T01:intron 20.0%
!! TCATTTGTATCGAATTATTA+GGG - Chr3:59839122-59839141 MsG0380014778.01.T01:intron 20.0%
!! TTATATTTATATTGTGGCAA+TGG + Chr3:59843753-59843772 None:intergenic 20.0%
!! TTCATTTGTATCGAATTATT+AGG - Chr3:59839121-59839140 MsG0380014778.01.T01:intron 20.0%
!! TTCTTCTCTAATAAAAAATG+AGG + Chr3:59840505-59840524 None:intergenic 20.0%
!! TTTAAATAATTCTGCAGTTA+AGG + Chr3:59843440-59843459 None:intergenic 20.0%
!!! ATACTGGTTAAAAAAAATAC+AGG + Chr3:59840619-59840638 None:intergenic 20.0%
!!! GAGTTTATTTAGTATTTTAC+TGG - Chr3:59840980-59840999 MsG0380014778.01.T01:intron 20.0%
!!! GGATAATAATTTTGAAAGTA+GGG + Chr3:59842393-59842412 None:intergenic 20.0%
!!! GTTTCTTTTTTTGAAATATC+AGG - Chr3:59840334-59840353 MsG0380014778.01.T01:intron 20.0%
!!! TACCCAATAAATTTGTTATT+TGG - Chr3:59838321-59838340 MsG0380014778.01.T01:intron 20.0%
!!! TCATAGATTTTGATCAATTA+CGG + Chr3:59840074-59840093 None:intergenic 20.0%
!!! TGGATAATAATTTTGAAAGT+AGG + Chr3:59842394-59842413 None:intergenic 20.0%
!!! TTAAGTTCATTATTTTCTGT+TGG - Chr3:59838045-59838064 MsG0380014778.01.T01:intron 20.0%
! AAAAGGAAGAAGTCAATAAA+AGG - Chr3:59839844-59839863 MsG0380014778.01.T01:intron 25.0%
! AAAGGAAGAAGTCAATAAAA+GGG - Chr3:59839845-59839864 MsG0380014778.01.T01:intron 25.0%
! AAATGAAACTAGATATCTCT+TGG - Chr3:59843234-59843253 MsG0380014778.01.T01:intron 25.0%
! AACACATATTTAAGTCTATC+AGG - Chr3:59838933-59838952 MsG0380014778.01.T01:intron 25.0%
! AATGTATATATCTGTTCGAT+AGG - Chr3:59841042-59841061 MsG0380014778.01.T01:intron 25.0%
! ACACTAAAATTTCATAGAGA+AGG + Chr3:59841917-59841936 None:intergenic 25.0%
! ACTGAGAATTTAAACTAGTT+TGG - Chr3:59838527-59838546 MsG0380014778.01.T01:intron 25.0%
! AGTGAAAAGAAGCAAAATAA+CGG + Chr3:59838970-59838989 None:intergenic 25.0%
! ATAAGTATTCTATGAAACAC+CGG - Chr3:59841778-59841797 MsG0380014778.01.T01:intron 25.0%
! ATAGGAGTAGATAACTAATT+AGG - Chr3:59839639-59839658 MsG0380014778.01.T01:intron 25.0%
! ATATTCTGATAGATGTTGAT+AGG - Chr3:59839621-59839640 MsG0380014778.01.T01:intron 25.0%
! ATCTTGTTGGTATTATTTGA+TGG - Chr3:59840470-59840489 MsG0380014778.01.T01:intron 25.0%
! CAGAATATGCTTTAGTAAAA+TGG + Chr3:59839609-59839628 None:intergenic 25.0%
! CATTTGTATCGAATTATTAG+GGG - Chr3:59839123-59839142 MsG0380014778.01.T01:intron 25.0%
! CTACATCTGAAAATTATACT+CGG - Chr3:59842362-59842381 MsG0380014778.01.T01:intron 25.0%
! CTTGTGTAACTAGTTAATAA+AGG + Chr3:59843326-59843345 None:intergenic 25.0%
! GCTTTAGTAAAATGGAAAAA+AGG + Chr3:59839601-59839620 None:intergenic 25.0%
! GTTAACATGAAATTTGTAGA+AGG - Chr3:59841381-59841400 MsG0380014778.01.T01:intron 25.0%
! GTTCAAGATTAGAGAAAAAA+TGG - Chr3:59841353-59841372 MsG0380014778.01.T01:intron 25.0%
! TAAAGAAAATACATGCATAC+TGG + Chr3:59840635-59840654 None:intergenic 25.0%
! TAACTACTTTACTTTGTAGA+CGG + Chr3:59842060-59842079 None:intergenic 25.0%
! TAAGGAATTCGTATGAAAAT+TGG - Chr3:59838416-59838435 MsG0380014778.01.T01:intron 25.0%
! TCTTGTTGGTATTATTTGAT+GGG - Chr3:59840471-59840490 MsG0380014778.01.T01:intron 25.0%
! TGATACATATGGTTTAAAAG+AGG + Chr3:59840228-59840247 None:intergenic 25.0%
! TGGTTAATTGAAGTGATTTA+AGG - Chr3:59838341-59838360 MsG0380014778.01.T01:intron 25.0%
! TGTCTATTAACAGTATCATT+TGG + Chr3:59841863-59841882 None:intergenic 25.0%
! TTGAATGAGAAAGATTTACT+TGG + Chr3:59841950-59841969 None:intergenic 25.0%
!! AACTAGTTTAAATTCTCAGT+TGG + Chr3:59838527-59838546 None:intergenic 25.0%
!! AACTTTTATTGTGAGAATCA+AGG + Chr3:59843635-59843654 None:intergenic 25.0%
!! AATTATCGTTTTCACAACTA+GGG - Chr3:59842688-59842707 MsG0380014778.01.T01:intron 25.0%
!! AATTGTGGAAAAGTTTTCAT+TGG + Chr3:59839807-59839826 None:intergenic 25.0%
!! ATAACCGAGTAATATTTTGT+AGG + Chr3:59843066-59843085 None:intergenic 25.0%
!! ATCAACAGGATTTTTATCAA+TGG - Chr3:59839431-59839450 MsG0380014778.01.T01:intron 25.0%
!! ATTCTCTAAGAGACATTTAA+TGG - Chr3:59838256-59838275 MsG0380014778.01.T01:intron 25.0%
!! ATTTGAACATGTGTTTTCTT+TGG + Chr3:59839556-59839575 None:intergenic 25.0%
!! GAGTATAATTTTCAGATGTA+GGG + Chr3:59842363-59842382 None:intergenic 25.0%
!! GTGATATCATCTAAAATGAA+GGG - Chr3:59838363-59838382 MsG0380014778.01.T01:intron 25.0%
!! GTTAGTCAATTTGGTTATTT+TGG - Chr3:59838199-59838218 MsG0380014778.01.T01:intron 25.0%
!! TAAAAACATTACCTTTGGAA+CGG + Chr3:59840299-59840318 None:intergenic 25.0%
!! TAACCGAGTAATATTTTGTA+GGG + Chr3:59843065-59843084 None:intergenic 25.0%
!! TGGATAATTAATAGCTTTTG+AGG + Chr3:59842226-59842245 None:intergenic 25.0%
!! TGTATTTTCTTTAACCAGTA+TGG - Chr3:59840642-59840661 MsG0380014778.01.T01:intron 25.0%
!! TTCTCTTTAGTTAGTCATTT+TGG - Chr3:59838162-59838181 MsG0380014778.01.T01:intron 25.0%
!!! AAGAGAAACTCATTTTGAAA+CGG + Chr3:59840709-59840728 None:intergenic 25.0%
!!! ATGTGTTTTAAAGAAATGCT+AGG - Chr3:59841710-59841729 MsG0380014778.01.T01:intron 25.0%
!!! ATTAATAGCTTTTGAGGATA+AGG + Chr3:59842220-59842239 None:intergenic 25.0%
!!! CATTATCTTTTGTTTTCTCT+AGG + Chr3:59842870-59842889 None:intergenic 25.0%
!!! TGTGTTTTAAAGAAATGCTA+GGG - Chr3:59841711-59841730 MsG0380014778.01.T01:intron 25.0%
!!! TGTTATTTCGTTAGTCAATT+TGG - Chr3:59838190-59838209 MsG0380014778.01.T01:intron 25.0%
!!! TTGTCTCTTGTTTGATTTTA+AGG + Chr3:59841824-59841843 None:intergenic 25.0%
AAACGACACTCATTATGAAA+TGG - Chr3:59840942-59840961 MsG0380014778.01.T01:intron 30.0%
AACCATATGTATCACGTAAT+CGG - Chr3:59840234-59840253 MsG0380014778.01.T01:intron 30.0%
AACTGAGCAATGAAAAAAGT+TGG - Chr3:59842309-59842328 MsG0380014778.01.T01:intron 30.0%
AAGGAAGAAGTCAATAAAAG+GGG - Chr3:59839846-59839865 MsG0380014778.01.T01:intron 30.0%
AAGGTTGTTAAGAGGATAAA+AGG + Chr3:59841898-59841917 None:intergenic 30.0%
AAGTTAAGTGATGTGAAATG+AGG - Chr3:59838485-59838504 MsG0380014778.01.T01:intron 30.0%
AAGTTCAAATGAATCTCTGA+TGG - Chr3:59839371-59839390 MsG0380014778.01.T01:intron 30.0%
AATAAATTTGCAGACGAGAA+AGG - Chr3:59842897-59842916 MsG0380014778.01.T01:CDS 30.0%
AATAATTCTGCAGTTAAGGT+TGG + Chr3:59843436-59843455 None:intergenic 30.0%
AATGAATTGGATGGATCAAT+TGG - Chr3:59843834-59843853 MsG0380014778.01.T01:intron 30.0%
ACAATTCATGGTAAGTCAAT+TGG - Chr3:59839821-59839840 MsG0380014778.01.T01:intron 30.0%
ACATATTTAAGTCTATCAGG+TGG - Chr3:59838936-59838955 MsG0380014778.01.T01:intron 30.0%
ACGTCTACAAGAATCTTTAT+AGG + Chr3:59841637-59841656 None:intergenic 30.0%
AGTTAAGTGATGTGAAATGA+GGG - Chr3:59838486-59838505 MsG0380014778.01.T01:intron 30.0%
AGTTCAAATGAATCTCTGAT+GGG - Chr3:59839372-59839391 MsG0380014778.01.T01:intron 30.0%
ATAAAGAAAAAATGGGAACC+TGG + Chr3:59837744-59837763 None:intergenic 30.0%
ATCCATGATCATAATCTTGT+TGG - Chr3:59840457-59840476 MsG0380014778.01.T01:intron 30.0%
ATCGAATTATTAGGGGAAAA+GGG - Chr3:59839130-59839149 MsG0380014778.01.T01:intron 30.0%
CAAAATTTGTACATCCAGAT+TGG - Chr3:59841674-59841693 MsG0380014778.01.T01:intron 30.0%
CTACCCTACAAAATATTACT+CGG - Chr3:59843059-59843078 MsG0380014778.01.T01:intron 30.0%
GAGAATAAAATAGAAGACGA+AGG - Chr3:59839960-59839979 MsG0380014778.01.T01:intron 30.0%
GAGGCTAATTCTTCTAATTA+AGG - Chr3:59838398-59838417 MsG0380014778.01.T01:intron 30.0%
GATGAAAAATTGTGAACCAT+TGG + Chr3:59839475-59839494 None:intergenic 30.0%
GCATAACGCTTAGTTAATAA+AGG + Chr3:59842731-59842750 None:intergenic 30.0%
GTAAGGATGAAAATGAAACT+AGG + Chr3:59842418-59842437 None:intergenic 30.0%
GTTACACAAGATTAACAAGT+TGG - Chr3:59843336-59843355 MsG0380014778.01.T01:intron 30.0%
TAAAAAATAAGTAGTCCTGC+AGG + Chr3:59841269-59841288 None:intergenic 30.0%
TAACATCTTCAACATATCGT+TGG + Chr3:59841226-59841245 None:intergenic 30.0%
TACCAACAAGATTATGATCA+TGG + Chr3:59840462-59840481 None:intergenic 30.0%
TACTTTGATGTTCAGATTGA+TGG - Chr3:59837971-59837990 MsG0380014778.01.T01:intron 30.0%
TAGGAAATGGATGAAATGTT+AGG + Chr3:59839001-59839020 None:intergenic 30.0%
TATATATCTGTTCGATAGGT+TGG - Chr3:59841046-59841065 MsG0380014778.01.T01:intron 30.0%
TATCGAATTATTAGGGGAAA+AGG - Chr3:59839129-59839148 MsG0380014778.01.T01:intron 30.0%
TGCACCACTTATTATAAAAG+AGG + Chr3:59840138-59840157 None:intergenic 30.0%
TGCTTATAAAAAGTGAAGGA+CGG + Chr3:59842101-59842120 None:intergenic 30.0%
TGTATGTCATGTCATGATTA+TGG + Chr3:59840582-59840601 None:intergenic 30.0%
TTAAGAGGATAAAAGGAATC+TGG + Chr3:59841891-59841910 None:intergenic 30.0%
TTAATTAATGCAGGCAAAGA+AGG - Chr3:59837913-59837932 MsG0380014778.01.T01:intron 30.0%
TTACGGAAACATGTAAATGT+TGG + Chr3:59840057-59840076 None:intergenic 30.0%
TTATATTGTGGCAATGGTTT+AGG + Chr3:59843747-59843766 None:intergenic 30.0%
TTCTCTTTATATAGCAATGC+TGG + Chr3:59839747-59839766 None:intergenic 30.0%
TTGAACGAACGAAAATGAAT+TGG - Chr3:59843821-59843840 MsG0380014778.01.T01:intron 30.0%
TTGTTCAGTCTCATATTTAC+CGG - Chr3:59840404-59840423 MsG0380014778.01.T01:intron 30.0%
! AAGGTGCTTATAAAAAGTGA+AGG + Chr3:59842105-59842124 None:intergenic 30.0%
! AAGTAGTGCAGAGTATTAAT+TGG + Chr3:59840813-59840832 None:intergenic 30.0%
! AATTGACTTACCATGAATTG+TGG + Chr3:59839822-59839841 None:intergenic 30.0%
! ATCATCTTTCAAGTAGAGAT+TGG - Chr3:59843364-59843383 MsG0380014778.01.T01:intron 30.0%
! CGAGTATAATTTTCAGATGT+AGG + Chr3:59842364-59842383 None:intergenic 30.0%
! GAAAACTTTTCCACAATTCA+TGG - Chr3:59839809-59839828 MsG0380014778.01.T01:intron 30.0%
! GAATTATCGTTTTCACAACT+AGG - Chr3:59842687-59842706 MsG0380014778.01.T01:intron 30.0%
! GGTGATATCATCTAAAATGA+AGG - Chr3:59838362-59838381 MsG0380014778.01.T01:intron 30.0%
! GTGTTGTAATAGGTCTTTTT+GGG - Chr3:59838594-59838613 MsG0380014778.01.T01:intron 30.0%
! TACATCCAGATTGGTTAATT+TGG - Chr3:59841683-59841702 MsG0380014778.01.T01:intron 30.0%
! TTTTTATCAATGGCAAATGC+TGG - Chr3:59839441-59839460 MsG0380014778.01.T01:intron 30.0%
!! AAAAACATTACCTTTGGAAC+GGG + Chr3:59840298-59840317 None:intergenic 30.0%
!! CTCTATGAAATTTTAGTGTG+AGG - Chr3:59841918-59841937 MsG0380014778.01.T01:intron 30.0%
!! TTTTTGAATGGGTTCGAAAA+AGG + Chr3:59842124-59842143 None:intergenic 30.0%
!!! GGACTTTTTTTCAAATTACC+TGG + Chr3:59843305-59843324 None:intergenic 30.0%
!!! TATTTGACGCCTTAGTTTTT+TGG - Chr3:59841573-59841592 MsG0380014778.01.T01:intron 30.0%
!!! TTCATAATGAGTGTCGTTTT+AGG + Chr3:59840941-59840960 None:intergenic 30.0%
!!! TTGTCATTTTCTGTATCAAC+AGG - Chr3:59839417-59839436 MsG0380014778.01.T01:intron 30.0%
!!! TTTTGAAATATCAGGTGCAT+TGG - Chr3:59840342-59840361 MsG0380014778.01.T01:intron 30.0%
AAAAAGTGAAGGACGGTTAT+TGG + Chr3:59842094-59842113 None:intergenic 35.0%
AAAAGTGAAGGACGGTTATT+GGG + Chr3:59842093-59842112 None:intergenic 35.0%
AAACCGAGCAATGAAAAAGT+TGG - Chr3:59843011-59843030 MsG0380014778.01.T01:intron 35.0%
AAAGAGTCGATACTGCTTAT+TGG - Chr3:59843556-59843575 MsG0380014778.01.T01:intron 35.0%
AAGGACCATATGAAATGCTA+TGG + Chr3:59841805-59841824 None:intergenic 35.0%
AATTATAACACCCGTTCCAA+AGG - Chr3:59840285-59840304 MsG0380014778.01.T01:intron 35.0%
AATTGTGAACCATTGGTATC+AGG + Chr3:59839468-59839487 None:intergenic 35.0%
ACCATATGTATCACGTAATC+GGG - Chr3:59840235-59840254 MsG0380014778.01.T01:intron 35.0%
ACCATCCTTTCTCTCAAAAA+GGG + Chr3:59843185-59843204 None:intergenic 35.0%
ACGAACGAAAATGAATTGGA+TGG - Chr3:59843825-59843844 MsG0380014778.01.T01:intron 35.0%
AGACAGATAGAACATTTACC+TGG + Chr3:59839324-59839343 None:intergenic 35.0%
AGTCTCATATTTACCGGAAA+GGG - Chr3:59840410-59840429 MsG0380014778.01.T01:intron 35.0%
ATAGCAAAGCTATGTGTGTT+TGG - Chr3:59843581-59843600 MsG0380014778.01.T01:intron 35.0%
CATGGTAAGTCAATTGGAAA+AGG - Chr3:59839827-59839846 MsG0380014778.01.T01:intron 35.0%
GACACTCATTATGAAATGGT+GGG - Chr3:59840946-59840965 MsG0380014778.01.T01:intron 35.0%
GATATGAGATCCAATGCAAA+AGG - Chr3:59842947-59842966 MsG0380014778.01.T01:intron 35.0%
GCGTTAACAAATTTGAGTCA+GGG + Chr3:59840372-59840391 None:intergenic 35.0%
GGATGAAAATGAAACTAGGA+TGG + Chr3:59842414-59842433 None:intergenic 35.0%
GTGTGATATAAGTGAGAAAG+AGG - Chr3:59840202-59840221 MsG0380014778.01.T01:intron 35.0%
GTTCAAATGAATCTCTGATG+GGG - Chr3:59839373-59839392 MsG0380014778.01.T01:intron 35.0%
GTTTACAAGATTGAAGCTGA+AGG - Chr3:59841116-59841135 MsG0380014778.01.T01:intron 35.0%
TAAAGCTAGGGATAATCCTA+TGG + Chr3:59839201-59839220 None:intergenic 35.0%
TCATAGAGAAGGTTGTTAAG+AGG + Chr3:59841906-59841925 None:intergenic 35.0%
TCGAATTATTAGGGGAAAAG+GGG - Chr3:59839131-59839150 MsG0380014778.01.T01:intron 35.0%
TGAGAAAAAAAATGTGGCGT+AGG - Chr3:59840101-59840120 MsG0380014778.01.T01:intron 35.0%
TGATGTTCAGATTGATGGAA+AGG - Chr3:59837976-59837995 MsG0380014778.01.T01:intron 35.0%
TGCGTTAACAAATTTGAGTC+AGG + Chr3:59840373-59840392 None:intergenic 35.0%
TGTTGAAGCAGTATCAATGT+TGG + Chr3:59841470-59841489 None:intergenic 35.0%
TTCAAGTAGAGATTGGAACT+TGG - Chr3:59843371-59843390 MsG0380014778.01.T01:intron 35.0%
TTCGTCCAAATTAACCAATC+TGG + Chr3:59841691-59841710 None:intergenic 35.0%
TTTACACATGGCAATGGAAT+GGG - Chr3:59839238-59839257 MsG0380014778.01.T01:intron 35.0%
TTTGAAGGAAGTGACAAACA+AGG - Chr3:59837946-59837965 MsG0380014778.01.T01:intron 35.0%
! AGTGCAGAGTATTAATTGGA+GGG + Chr3:59840809-59840828 None:intergenic 35.0%
! CAAAAGGGTACATCAAAACA+AGG + Chr3:59838706-59838725 None:intergenic 35.0%
! CGTGTTGTAATAGGTCTTTT+TGG - Chr3:59838593-59838612 MsG0380014778.01.T01:intron 35.0%
! GAGAGAACCATTTTGAATGA+CGG + Chr3:59842465-59842484 None:intergenic 35.0%
! GAGAGCATAGCGAATTAAAA+AGG - Chr3:59839779-59839798 MsG0380014778.01.T01:intron 35.0%
! GAGGCCTCTTTTATAATAAG+TGG - Chr3:59840131-59840150 MsG0380014778.01.T01:intron 35.0%
! GATGTACAAATTTTGCACGT+CGG + Chr3:59841669-59841688 None:intergenic 35.0%
! GTGTACTTGTTGGATTCTAT+AGG + Chr3:59842029-59842048 None:intergenic 35.0%
! TAGTGCAGAGTATTAATTGG+AGG + Chr3:59840810-59840829 None:intergenic 35.0%
! TGGAATGAACCTAGACATTT+TGG - Chr3:59842637-59842656 MsG0380014778.01.T01:intron 35.0%
! TTGTGACTCTTTTACTTTCC+AGG - Chr3:59838569-59838588 MsG0380014778.01.T01:intron 35.0%
! TTTTACACATGGCAATGGAA+TGG - Chr3:59839237-59839256 MsG0380014778.01.T01:intron 35.0%
!! ATAGCTTTTGAGGATAAGGA+TGG + Chr3:59842216-59842235 None:intergenic 35.0%
!! GATTTTGAAAACCTTACCTG+CGG + Chr3:59838636-59838655 None:intergenic 35.0%
!! TAGCTTTTGAGGATAAGGAT+GGG + Chr3:59842215-59842234 None:intergenic 35.0%
!! TGTATCTTTGCTGTGTTTTG+TGG - Chr3:59841503-59841522 MsG0380014778.01.T01:intron 35.0%
!!! AAGGCATGTTGTTTTTGGAA+AGG - Chr3:59841073-59841092 MsG0380014778.01.T01:intron 35.0%
!!! AGAAACTCATTTTGAAACGG+AGG + Chr3:59840706-59840725 None:intergenic 35.0%
!!! AGACCAACTTTTTCATTGCT+CGG + Chr3:59843017-59843036 None:intergenic 35.0%
!!! GAAACTCATTTTGAAACGGA+GGG + Chr3:59840705-59840724 None:intergenic 35.0%
!!! TGTTTTTGGAAAGGTGCTTT+CGG - Chr3:59841082-59841101 MsG0380014778.01.T01:intron 35.0%
AAAGTGAAGGACGGTTATTG+GGG + Chr3:59842092-59842111 None:intergenic 40.0%
AAGAACCGATGACTATCAGT+TGG - Chr3:59838882-59838901 MsG0380014778.01.T01:intron 40.0%
AAGAAGTCAATAAAAGGGGC+TGG - Chr3:59839850-59839869 MsG0380014778.01.T01:intron 40.0%
AAGAGGCTTTCCAGATTTAC+CGG + Chr3:59839158-59839177 None:intergenic 40.0%
AAGGTTGTGATTGCTGATAG+TGG - Chr3:59841164-59841183 MsG0380014778.01.T01:intron 40.0%
AATGATTCGCATCTCCATAC+TGG + Chr3:59840659-59840678 None:intergenic 40.0%
ACAAAGGTAGCTCATTCCAT+AGG - Chr3:59839182-59839201 MsG0380014778.01.T01:intron 40.0%
ACAAGCCAACTGATAGTCAT+CGG + Chr3:59838890-59838909 None:intergenic 40.0%
AGAAGTCAATAAAAGGGGCT+GGG - Chr3:59839851-59839870 MsG0380014778.01.T01:intron 40.0%
AGTGGTGCAAGATGATATTG+CGG - Chr3:59840149-59840168 MsG0380014778.01.T01:intron 40.0%
ATCCTTTCTCTCAAAAAGGG+AGG + Chr3:59843182-59843201 None:intergenic 40.0%
ATCGGGAACAAAATGGCAAA+AGG - Chr3:59840252-59840271 MsG0380014778.01.T01:intron 40.0%
ATGAGAGGATGCACTTATAG+AGG + Chr3:59841197-59841216 None:intergenic 40.0%
ATGAGATCCAATGCAAAAGG+AGG - Chr3:59842950-59842969 MsG0380014778.01.T01:intron 40.0%
ATGGATCAATTGGATCAGTG+AGG - Chr3:59843844-59843863 MsG0380014778.01.T01:intron 40.0%
ATGGGCGGAGAATCAATTTA+CGG - Chr3:59839256-59839275 MsG0380014778.01.T01:intron 40.0%
ATTGTGGCAATGGTTTAGGT+GGG + Chr3:59843743-59843762 None:intergenic 40.0%
CAATTGGATCAGTGAGGAAT+TGG - Chr3:59843850-59843869 MsG0380014778.01.T01:intron 40.0%
CACCATCCTTTCTCTCAAAA+AGG + Chr3:59843186-59843205 None:intergenic 40.0%
CAGTCTCATATTTACCGGAA+AGG - Chr3:59840409-59840428 MsG0380014778.01.T01:intron 40.0%
CATGTGTAAAATCACCTCCT+TGG + Chr3:59839228-59839247 None:intergenic 40.0%
CATTTATCCGGATCCAATTG+TGG + Chr3:59844038-59844057 None:intergenic 40.0%
CCATATGAAATGCTATGGAC+CGG + Chr3:59841800-59841819 None:intergenic 40.0%
CGACACTCATTATGAAATGG+TGG - Chr3:59840945-59840964 MsG0380014778.01.T01:intron 40.0%
CTAAGATCGATCTCAGTGTT+CGG + Chr3:59837635-59837654 None:intergenic 40.0%
CTCCTTGGATCATAAAGCTA+GGG + Chr3:59839213-59839232 None:intergenic 40.0%
CTCGAAAATTGTTTGTCGTG+AGG + Chr3:59842192-59842211 None:intergenic 40.0%
CTTATATCACACGTTGTCGT+AGG + Chr3:59840194-59840213 None:intergenic 40.0%
GAAGCTGAAGGAAATCAAAG+TGG - Chr3:59841128-59841147 MsG0380014778.01.T01:intron 40.0%
GAAGGAAATCCAAGTGAACA+TGG - Chr3:59841399-59841418 MsG0380014778.01.T01:intron 40.0%
GAATTGGATCAGGAATTGGA+TGG - Chr3:59843866-59843885 MsG0380014778.01.T01:intron 40.0%
GAATTGGATGGATCCAATTG+TGG - Chr3:59843878-59843897 MsG0380014778.01.T01:intron 40.0%
GAGCTACCTTTGTAATGAAG+AGG + Chr3:59839175-59839194 None:intergenic 40.0%
GGAAAGCCTCTTCATTACAA+AGG - Chr3:59839166-59839185 MsG0380014778.01.T01:intron 40.0%
GGTCTAATACGTGTACTTGT+TGG + Chr3:59842039-59842058 None:intergenic 40.0%
TATCACTGTCTGAGCTTATG+AGG - Chr3:59839040-59839059 MsG0380014778.01.T01:intron 40.0%
TATTGTGGCAATGGTTTAGG+TGG + Chr3:59843744-59843763 None:intergenic 40.0%
TCAATGTCAGTCGTCTGATA+TGG + Chr3:59842615-59842634 None:intergenic 40.0%
TCACGTAATCGGGAACAAAA+TGG - Chr3:59840245-59840264 MsG0380014778.01.T01:intron 40.0%
TCCCGATTACGTGATACATA+TGG + Chr3:59840239-59840258 None:intergenic 40.0%
TGAGGAATTGGATCAGGAAT+TGG - Chr3:59843862-59843881 MsG0380014778.01.T01:intron 40.0%
TTGCACAACTATTCCCTTTC+CGG + Chr3:59840426-59840445 None:intergenic 40.0%
TTTCCAGGTCGTGTTGTAAT+AGG - Chr3:59838584-59838603 MsG0380014778.01.T01:intron 40.0%
! AAAACCTTACCTGCGGTTTT+TGG + Chr3:59838629-59838648 None:intergenic 40.0%
! AGAACCATTTTGAATGACGG+TGG + Chr3:59842462-59842481 None:intergenic 40.0%
! CAAGGAGGTGATTTTACACA+TGG - Chr3:59839226-59839245 MsG0380014778.01.T01:intron 40.0%
! CTCGGAAGTTTTCTGCAAAA+GGG + Chr3:59838721-59838740 None:intergenic 40.0%
! CTCTTTTCACTGTTCCTCTT+CGG - Chr3:59837703-59837722 MsG0380014778.01.T01:intron 40.0%
! GGTGATTTTACACATGGCAA+TGG - Chr3:59839232-59839251 MsG0380014778.01.T01:intron 40.0%
! TATCGTTGGTGAGATATGAG+AGG + Chr3:59841212-59841231 None:intergenic 40.0%
! TATCTGTTCGATAGGTTGGA+TGG - Chr3:59841050-59841069 MsG0380014778.01.T01:intron 40.0%
! TCTCTAGGAACACACTTATC+TGG + Chr3:59842855-59842874 None:intergenic 40.0%
!! ACTATCAGTTGGCTTGTAAC+TGG - Chr3:59838893-59838912 MsG0380014778.01.T01:intron 40.0%
!! ATCCCTAGCTTTATGATCCA+AGG - Chr3:59839208-59839227 MsG0380014778.01.T01:intron 40.0%
!! TCCCTTTTTGAGAGAAAGGA+TGG - Chr3:59843181-59843200 MsG0380014778.01.T01:intron 40.0%
!!! GAAGTATCGTTTTCACAACC+AGG - Chr3:59843284-59843303 MsG0380014778.01.T01:intron 40.0%
!!! GATGGAAGGCATGTTGTTTT+TGG - Chr3:59841068-59841087 MsG0380014778.01.T01:intron 40.0%
!!! GTTTTTGGAAAGGTGCTTTC+GGG - Chr3:59841083-59841102 MsG0380014778.01.T01:intron 40.0%
AAGACAGTTCCAAAAACCGC+AGG - Chr3:59838617-59838636 MsG0380014778.01.T01:intron 45.0%
AAGTGAAGGACGGTTATTGG+GGG + Chr3:59842091-59842110 None:intergenic 45.0%
AATGCTGGTCCTGATACCAA+TGG - Chr3:59839456-59839475 MsG0380014778.01.T01:intron 45.0%
AATTCGCTATGCTCTCGTGA+TGG + Chr3:59839775-59839794 None:intergenic 45.0%
ACTCAACTGCCATGTTCACT+TGG + Chr3:59841411-59841430 None:intergenic 45.0%
ACTGCATGCAGTGGACATAT+AGG + Chr3:59839666-59839685 None:intergenic 45.0%
AGAAAGGACGACTTGTGAGT+AGG - Chr3:59842913-59842932 MsG0380014778.01.T01:intron 45.0%
AGACCTATTACAACACGACC+TGG + Chr3:59838590-59838609 None:intergenic 45.0%
AGAGAGAGAGAGAGAGATGA+GGG - Chr3:59842587-59842606 MsG0380014778.01.T01:intron 45.0%
AGCAAAGCAAAACAAGCCGA+TGG - Chr3:59837660-59837679 MsG0380014778.01.T01:CDS 45.0%
AGCAATCACAACCTTGCTCT+TGG + Chr3:59841159-59841178 None:intergenic 45.0%
AGTTCCAAAAACCGCAGGTA+AGG - Chr3:59838622-59838641 MsG0380014778.01.T01:intron 45.0%
ATGGATCAGTGAGATCAGTG+AGG + Chr3:59843919-59843938 None:intergenic 45.0%
CAGATTGATGGAAAGGATGC+AGG - Chr3:59837983-59838002 MsG0380014778.01.T01:intron 45.0%
CCGGTCCATAGCATTTCATA+TGG - Chr3:59841797-59841816 MsG0380014778.01.T01:intron 45.0%
CCTCCTTGGATCATAAAGCT+AGG + Chr3:59839214-59839233 None:intergenic 45.0%
GAACTTCAAGCTAAGCACAC+TGG - Chr3:59839297-59839316 MsG0380014778.01.T01:intron 45.0%
GAAGGCGAAAGAGGATTTGA+AGG - Chr3:59837931-59837950 MsG0380014778.01.T01:intron 45.0%
GACACCACCGTCATTCAAAA+TGG - Chr3:59842455-59842474 MsG0380014778.01.T01:intron 45.0%
GATCAGTGAGGAATTGGATC+AGG - Chr3:59843856-59843875 MsG0380014778.01.T01:intron 45.0%
GCAATCACAACCTTGCTCTT+GGG + Chr3:59841158-59841177 None:intergenic 45.0%
GGGAACCTGGATAAGAGATA+GGG + Chr3:59837731-59837750 None:intergenic 45.0%
GTCTCAGATAGCGCTATGTA+AGG + Chr3:59842435-59842454 None:intergenic 45.0%
TAAGAGATAGGGTTCCGAAG+AGG + Chr3:59837720-59837739 None:intergenic 45.0%
TCACAACTGTGACAACTAGC+TGG - Chr3:59839493-59839512 MsG0380014778.01.T01:intron 45.0%
TCAGACGACTGACATTGACA+TGG - Chr3:59842617-59842636 MsG0380014778.01.T01:intron 45.0%
TGATCCATCTCACTGATCCA+GGG - Chr3:59843931-59843950 MsG0380014778.01.T01:CDS 45.0%
TGGATCAGTGAGATCAGTGA+GGG + Chr3:59843918-59843937 None:intergenic 45.0%
TGGGAACCTGGATAAGAGAT+AGG + Chr3:59837732-59837751 None:intergenic 45.0%
TTATTAGGGGAAAAGGGGAC+CGG - Chr3:59839136-59839155 MsG0380014778.01.T01:intron 45.0%
TTCATTTCCATTGCACCTGC+AGG - Chr3:59841251-59841270 MsG0380014778.01.T01:intron 45.0%
! GATTGAGCCTCCTTTTGCAT+TGG + Chr3:59842960-59842979 None:intergenic 45.0%
! GCTCGGAAGTTTTCTGCAAA+AGG + Chr3:59838722-59838741 None:intergenic 45.0%
! TGTTCGATAGGTTGGATGGA+AGG - Chr3:59841054-59841073 MsG0380014778.01.T01:intron 45.0%
!! CAAAAAGGGAGGCATCTTCA+AGG + Chr3:59843171-59843190 None:intergenic 45.0%
!! CAGTTGGCTTGTAACTGGAT+AGG - Chr3:59838898-59838917 MsG0380014778.01.T01:intron 45.0%
!! CCTAGCTTTATGATCCAAGG+AGG - Chr3:59839211-59839230 MsG0380014778.01.T01:intron 45.0%
!! TGCCTCCCTTTTTGAGAGAA+AGG - Chr3:59843177-59843196 MsG0380014778.01.T01:intron 45.0%
!!! AACGACGTCGTTTTTGCCAT+CGG + Chr3:59837679-59837698 None:intergenic 45.0%
AACTTCCGAGCTCTTTGCAC+AGG - Chr3:59838731-59838750 MsG0380014778.01.T01:intron 50.0%
AAGTAGTCCTGCAGGTGCAA+TGG + Chr3:59841261-59841280 None:intergenic 50.0%
ACACATGGCAATGGAATGGG+CGG - Chr3:59839241-59839260 MsG0380014778.01.T01:intron 50.0%
AGTCAATAAAAGGGGCTGGG+TGG - Chr3:59839854-59839873 MsG0380014778.01.T01:intron 50.0%
ATGTGGCGTAGGTGAGAAAG+AGG - Chr3:59840112-59840131 MsG0380014778.01.T01:intron 50.0%
CCACAATTGGATCCGGATGA+CGG - Chr3:59843960-59843979 MsG0380014778.01.T01:CDS 50.0%
CGGAACCCTATCTCTTATCC+AGG - Chr3:59837723-59837742 MsG0380014778.01.T01:intron 50.0%
CTGATCCATCTCACTGATCC+AGG - Chr3:59843930-59843949 MsG0380014778.01.T01:CDS 50.0%
GAAAAGGGGACCGGTAAATC+TGG - Chr3:59839145-59839164 MsG0380014778.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGATG+AGG - Chr3:59842586-59842605 MsG0380014778.01.T01:intron 50.0%
GATCCATCTCACTGATCCAG+GGG - Chr3:59843932-59843951 MsG0380014778.01.T01:CDS 50.0%
GGATCAGTGAGATCAGTGAG+GGG + Chr3:59843917-59843936 None:intergenic 50.0%
GTCTCCATCTCACTGATCCA+GGG - Chr3:59843982-59844001 MsG0380014778.01.T01:five_prime_UTR 50.0%
TCCAATTGTGGACCGTCATC+CGG + Chr3:59844026-59844045 None:intergenic 50.0%
TCTCCATCTCACTGATCCAG+GGG - Chr3:59843983-59844002 MsG0380014778.01.T01:five_prime_UTR 50.0%
TGACGGTCCACAATTGGATC+CGG - Chr3:59844028-59844047 MsG0380014778.01.T01:five_prime_UTR 50.0%
TGCGTCAAAACTGCATGCAG+TGG + Chr3:59839675-59839694 None:intergenic 50.0%
! TGAAGGGTGTGCGTGTATAG+AGG - Chr3:59838379-59838398 MsG0380014778.01.T01:intron 50.0%
!! TGGAAAGGTGCTTTCGGGAA+TGG - Chr3:59841088-59841107 MsG0380014778.01.T01:intron 50.0%
AAGTGGCACTCCCAAGAGCA+AGG - Chr3:59841145-59841164 MsG0380014778.01.T01:intron 55.0%
ATCCAATTGTGGACCGTCCC+TGG - Chr3:59843889-59843908 MsG0380014778.01.T01:intron 55.0%
CAAGCTAAGCACACTGGTCC+AGG - Chr3:59839303-59839322 MsG0380014778.01.T01:intron 55.0%
CATCTCACTGATCCAGGGGA+CGG - Chr3:59843936-59843955 MsG0380014778.01.T01:CDS 55.0%
CCGTCATCCGGATCCAATTG+TGG + Chr3:59843963-59843982 None:intergenic 55.0%
GCAGGCAAAGAAGGCGAAAG+AGG - Chr3:59837922-59837941 MsG0380014778.01.T01:intron 55.0%
GCTCACCTGTGCAAAGAGCT+CGG + Chr3:59838739-59838758 None:intergenic 55.0%
GGACGGTCCACAATTGGATC+CGG - Chr3:59843953-59843972 MsG0380014778.01.T01:CDS 55.0%
GGTCTCCATCTCACTGATCC+AGG - Chr3:59843981-59844000 MsG0380014778.01.T01:five_prime_UTR 55.0%
GTGAGATGGAGACCGTCATC+CGG + Chr3:59843975-59843994 None:intergenic 55.0%
! TCCGGATGACGGTCCACAAT+TGG - Chr3:59844022-59844041 MsG0380014778.01.T01:five_prime_UTR 55.0%
!! GGAGGCATCTTCAAGGACAG+TGG + Chr3:59843164-59843183 None:intergenic 55.0%
AGCCAGGGACGGTCCACAAT+TGG + Chr3:59843894-59843913 None:intergenic 60.0%
CGTCCCCTGGATCAGTGAGA+TGG + Chr3:59843938-59843957 None:intergenic 60.0%
GAGATCAGTGAGGGGAGCCA+GGG + Chr3:59843909-59843928 None:intergenic 60.0%
TCCAATTGTGGACCGTCCCC+TGG + Chr3:59843951-59843970 None:intergenic 60.0%
TCCAGGGGACGGTCCACAAT+TGG - Chr3:59843947-59843966 MsG0380014778.01.T01:CDS 60.0%
TGAGATCAGTGAGGGGAGCC+AGG + Chr3:59843910-59843929 None:intergenic 60.0%
TCAGTGAGGGGAGCCAGGGA+CGG + Chr3:59843905-59843924 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 59837600 59844058 59837600 ID=MsG0380014778.01;Name=MsG0380014778.01
Chr3 mRNA 59837600 59844058 59837600 ID=MsG0380014778.01.T01;Parent=MsG0380014778.01;Name=MsG0380014778.01.T01;_AED=0.48;_eAED=0.60;_QI=79|0.66|0.57|1|0.5|0.71|7|0|190
Chr3 exon 59837600 59837706 59837600 ID=MsG0380014778.01.T01:exon:24075;Parent=MsG0380014778.01.T01
Chr3 exon 59840473 59840594 59840473 ID=MsG0380014778.01.T01:exon:24074;Parent=MsG0380014778.01.T01
Chr3 exon 59842144 59842219 59842144 ID=MsG0380014778.01.T01:exon:24073;Parent=MsG0380014778.01.T01
Chr3 exon 59842855 59842929 59842855 ID=MsG0380014778.01.T01:exon:24072;Parent=MsG0380014778.01.T01
Chr3 exon 59843020 59843067 59843020 ID=MsG0380014778.01.T01:exon:24071;Parent=MsG0380014778.01.T01
Chr3 exon 59843654 59843732 59843654 ID=MsG0380014778.01.T01:exon:24070;Parent=MsG0380014778.01.T01
Chr3 exon 59843914 59844058 59843914 ID=MsG0380014778.01.T01:exon:24069;Parent=MsG0380014778.01.T01
Chr3 five_prime_UTR 59843980 59844058 59843980 ID=MsG0380014778.01.T01:five_prime_utr;Parent=MsG0380014778.01.T01
Chr3 CDS 59843914 59843979 59843914 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59843654 59843732 59843654 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59843020 59843067 59843020 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59842855 59842929 59842855 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59842144 59842219 59842144 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59840473 59840594 59840473 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Chr3 CDS 59837600 59837706 59837600 ID=MsG0380014778.01.T01:cds;Parent=MsG0380014778.01.T01
Gene Sequence

>MsG0380014778.01.T01

ATGGCAAAAACGACGTCGTTGCTTCTCTTTTCACTGTTCCTCTTCGGAACCCTATCTCTTATCCAGGCAAAGAAGGCGAAAGAGGATTTGAAGGAAGTGACAAACAAGGTTTACTTTGATGTTCAGATTGATGGAAAGGATGCAGGTCGTGTTGTAATAGGTCTTTTTGGGAAGACAGTTCCAAAAACCGCAGAAAACTTCCGAGCTCTTTGCACAGGTGAGCTTGTTTCTGCTGCTACTGTGTATTTTATTTTATCATATGCTCAAAGATTTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATCACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTGCTTTCGGGAATGGATGTTGTTTACAAGATTGAAGCTGAAGGAAATCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGATAGTGGGGACGGTCCACAATTGGATCCGGATGACGGTCTCCATCTCACTGATCCAGGGGACGGTCCACAATTGGATCCGGATGACGGTCCACAATTGGATCCGGATAAATGA

Protein sequence

>MsG0380014778.01.T01

MAKTTSLLLFSLFLFGTLSLIQAKKAKEDLKEVTNKVYFDVQIDGKDAGRVVIGLFGKTVPKTAENFRALCTGELVSAATVYFILSYAQRFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIADSGDGPQLDPDDGLHLTDPGDGPQLDPDDGPQLDPDK*