AlfalfaGEDB | Msa0001680

M. sativa cultivar zhongmu-4 / Msa0001680

KEGG: K18677|K19347
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019586 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046396 GO:0046835 GO:0047912 GO:0071704
PFAM: PF10509.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001680	sp\|Q8VYG2\|GALAK_ARATH	64.815	432	141	2	6	437	3	423	0.0	548

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001680	Msa0052870	0.805817	1.111233e-49	-8.615850e-47
Msa0001680	Msa0093850	0.822232	2.644117e-53	-8.615850e-47
Msa0001680	Msa0098470	0.806436	8.232923e-50	-8.615850e-47
Msa0001680	Msa0106320	0.822824	1.926775e-53	-8.615850e-47
Msa0001680	Msa0221480	0.822189	2.705295e-53	-8.615850e-47
Msa0001680	Msa0249540	0.805012	1.638923e-49	-8.615850e-47
Msa0001680	Msa0307570	0.806310	8.751997e-50	-8.615850e-47
Msa0001680	Msa0341690	0.802301	5.987340e-49	-8.615850e-47
Msa0001680	Msa0573380	0.848084	7.679086e-60	-8.615850e-47
Msa0001680	Msa0581690	0.805019	1.633478e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001680	MtrunA17_Chr8g0389161	98.627	437	6	0	1	437	1	437	0.0	895

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001680	AT3G10700.1	64.815	432	141	2	6	437	3	423	0.0	548
Msa0001680	AT3G10700.3	63.812	362	120	2	76	437	5	355	2.69e-154	441
Msa0001680	AT3G10700.2	64.907	322	102	2	6	327	3	313	8.48e-138	398

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Find 115 sgRNAs with CRISPR-Local

Find 538 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGCTGGCTCTTTC+TGG	0.184400	1_1:+3395736	Msa0001680:CDS
AACATAAAATGGTGAGTGTT+TGG	0.470664	1_1:+3390659	Msa0001680:five_prime_UTR
AAGAATATAAGCTTATTCAC+CGG	0.614977	1_1:+3395668	Msa0001680:CDS
AATAAAGAAGCGCGAATCAT+TGG	0.408236	1_1:+3390747	Msa0001680:five_prime_UTR
AATAGCAGTTGGTAAATGGT+TGG	0.560886	1_1:-3390809	None:intergenic
AATCAATAAGGGAATACTTC+TGG	0.338568	1_1:+3391719	Msa0001680:CDS
AATGTTTAATCCAGGAGTCG+AGG	0.613521	1_1:+3397670	Msa0001680:intron
AATTAATTCTGCAGATCATC+TGG	0.392142	1_1:+3396244	Msa0001680:intron
ACGGGAAGTTTAGAAGATTT+TGG	0.201422	1_1:+3397701	Msa0001680:CDS
ACTTGTATGCTTCGCTTGTT+TGG	0.346147	1_1:+3390866	Msa0001680:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATAAAATGGTGAGTGTT+TGG	+	chr1_1:3390659-3390678	Msa0001680:five_prime_UTR	30.0%
ACAAAATTGTCTTGCATTTC+CGG	+	chr1_1:3391123-3391142	Msa0001680:intron	30.0%
AATATTAGGTATTAGAGCAC+TGG	+	chr1_1:3391571-3391590	Msa0001680:intron	30.0%
AATCAATAAGGGAATACTTC+TGG	+	chr1_1:3391719-3391738	Msa0001680:CDS	30.0%
ATCAATAAGGGAATACTTCT+GGG	+	chr1_1:3391720-3391739	Msa0001680:CDS	30.0%
CACTTATTTCACATTGTCTT+TGG	+	chr1_1:3391951-3391970	Msa0001680:intron	30.0%
GGGTTGTACAAAATAAGAAT+TGG	-	chr1_1:3392232-3392251	None:intergenic	30.0%
TTCAACTACCATTCTGATAA+CGG	+	chr1_1:3392376-3392395	Msa0001680:intron	30.0%
TTTCTGATTACAGCAAATCT+TGG	-	chr1_1:3392883-3392902	None:intergenic	30.0%
AGGTTACTAAGTACTAACAA+TGG	+	chr1_1:3393303-3393322	Msa0001680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	3390650	3399462	3390650	ID=Msa0001680;Name=Msa0001680
chr1_1	mRNA	3390650	3399462	3390650	ID=Msa0001680-mRNA-1;Parent=Msa0001680;Name=Msa0001680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=272\|1\|1\|1\|1\|1\|14\|192\|437
chr1_1	exon	3390650	3390954	3390650	ID=Msa0001680-mRNA-1:exon:934;Parent=Msa0001680-mRNA-1
chr1_1	exon	3391383	3391496	3391383	ID=Msa0001680-mRNA-1:exon:935;Parent=Msa0001680-mRNA-1
chr1_1	exon	3391696	3391767	3391696	ID=Msa0001680-mRNA-1:exon:936;Parent=Msa0001680-mRNA-1
chr1_1	exon	3392032	3392075	3392032	ID=Msa0001680-mRNA-1:exon:937;Parent=Msa0001680-mRNA-1
chr1_1	exon	3392496	3392649	3392496	ID=Msa0001680-mRNA-1:exon:938;Parent=Msa0001680-mRNA-1
chr1_1	exon	3393482	3393547	3393482	ID=Msa0001680-mRNA-1:exon:939;Parent=Msa0001680-mRNA-1
chr1_1	exon	3393624	3393703	3393624	ID=Msa0001680-mRNA-1:exon:940;Parent=Msa0001680-mRNA-1
chr1_1	exon	3394306	3394405	3394306	ID=Msa0001680-mRNA-1:exon:941;Parent=Msa0001680-mRNA-1
chr1_1	exon	3395664	3395839	3395664	ID=Msa0001680-mRNA-1:exon:942;Parent=Msa0001680-mRNA-1
chr1_1	exon	3396258	3396298	3396258	ID=Msa0001680-mRNA-1:exon:943;Parent=Msa0001680-mRNA-1
chr1_1	exon	3396425	3396453	3396425	ID=Msa0001680-mRNA-1:exon:944;Parent=Msa0001680-mRNA-1
chr1_1	exon	3397511	3397580	3397511	ID=Msa0001680-mRNA-1:exon:945;Parent=Msa0001680-mRNA-1
chr1_1	exon	3397684	3397773	3397684	ID=Msa0001680-mRNA-1:exon:946;Parent=Msa0001680-mRNA-1
chr1_1	exon	3399026	3399462	3399026	ID=Msa0001680-mRNA-1:exon:947;Parent=Msa0001680-mRNA-1
chr1_1	five_prime_UTR	3390650	3390921	3390650	ID=Msa0001680-mRNA-1:five_prime_utr;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3390922	3390954	3390922	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3391383	3391496	3391383	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3391696	3391767	3391696	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3392032	3392075	3392032	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3392496	3392649	3392496	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3393482	3393547	3393482	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3393624	3393703	3393624	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3394306	3394405	3394306	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3395664	3395839	3395664	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3396258	3396298	3396258	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3396425	3396453	3396425	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3397511	3397580	3397511	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3397684	3397773	3397684	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	CDS	3399026	3399270	3399026	ID=Msa0001680-mRNA-1:cds;Parent=Msa0001680-mRNA-1
chr1_1	three_prime_UTR	3399271	3399462	3399271	ID=Msa0001680-mRNA-1:three_prime_utr;Parent=Msa0001680-mRNA-1

Gene Sequence

>Msa0001680

ATGGCAGGGTCGTGTTGGCCTTCCGATACAGAGCTAAATGAAATGAGAGAGAAAGTTTCTCAAATGGCAAAGGTGAAGAAAGAGCATGTTCGAGTTGTCGTATCGCCCTATCGAATTTGTCCTTTGGGGGCACATATTGATCATCAGGGTGGGACTGTTTTAGCTATGACAATCAATAAGGGAATACTTCTGGGGTTTACTCCTTCTGGAAGCGATGAGTTTGTAATTCGTTCAGGACAGTTTCAAGGAGAAGTGAAGTTCAGAGTTGATGATATTCAGCAGCCAGTGCAAACTACTAAGACAAAAAATGATAACATGGCAGAGAATTCTTCCGAGCCACAGGAACAATGTAATTGGGGGCGTTATGCTAGAGGAGCCGTATATGCACTACAGAATAGGGGACACAATATTTCAAAGGGTATCATTGGATACATACGTGGTTCTGATGGTCTGGACAGTTCAGGCTTAAGTTCTTCTGCCGCAGTTGGAGTAGCATACCTCTTAGCTTTGGAACATGCAAATGATTTAGTAATATCTCCTACTGAAAATATTGAATATGATAGGTTGATTGAGAATGAATATTTGGGTCTGAAAAATGGCATAATGGACCAATCAGCTATACTACTTTCAAGACATGGTTGTTTGATGTGCATGAATTGCAAGACGAAAGAATATAAGCTTATTCACCGGCCAACGGTGCAAGAGTACAAAAAGAGTGAACAACCGAAAGCAGCTAAAATGTTGCTGGCTCTTTCTGGTTTGAAGCAAGCTTTGACTACCAACCCCGGATATAATAGGCGAGTTGCAGAGTGTAAAGAGGCTGCACGAATTCTTCTTGAATCATCTGGAGATTATGAAGCGGAGCACATCCTGTCAAATGTTGCACCGGAAGTTTATGAGGCTCACAAGTGCAAATTAGAACCCGATCTGGCCAAAAGAGCAGAGCATTATTTCTCAGAGAATATGCGTGTTATGAAAGGAGTCGAGGCTTGGGAAACGGGAAGTTTAGAAGATTTTGGAATTCTCATCGCTGCTTCTGGTCGGAGTTCCATTCAAAATTATGAATGTGGTTCTGAACCACTGATTCAACTGTATGAGATCCTATTGAGAGCTCCTGGTGTATTGGGGGCACGTTTCAGTGGTGCTGGGTTTAGAGGATGCTGTATTGCCCTTGTGGAGGAGCACCTTGCTACTGAAGCTGCATCATTTGTCAGGAGAGAATATCTCAAGGCCCAGCCCGAGTTAGCTAGTCAGATAAGCAGAGATACTGCAGTTTTAGTATGTGATTCTGGTGATTGTGCACGTGTAATTTGA

Protein sequence

>Msa0001680

MAGSCWPSDTELNEMREKVSQMAKVKKEHVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSGSDEFVIRSGQFQGEVKFRVDDIQQPVQTTKTKNDNMAENSSEPQEQCNWGRYARGAVYALQNRGHNISKGIIGYIRGSDGLDSSGLSSSAAVGVAYLLALEHANDLVISPTENIEYDRLIENEYLGLKNGIMDQSAILLSRHGCLMCMNCKTKEYKLIHRPTVQEYKKSEQPKAAKMLLALSGLKQALTTNPGYNRRVAECKEAARILLESSGDYEAEHILSNVAPEVYEAHKCKLEPDLAKRAEHYFSENMRVMKGVEAWETGSLEDFGILIAASGRSSIQNYECGSEPLIQLYEILLRAPGVLGARFSGAGFRGCCIALVEEHLATEAASFVRREYLKAQPELASQISRDTAVLVCDSGDCARVI*