AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004390 MtrunA17_Chr1g0156931 97.230 361 10 0 1 361 1 361 0.0 721
Msa0004390 MtrunA17_Chr3g0142941 71.217 337 96 1 25 360 31 367 0.0 517
Msa0004390 MtrunA17_Chr1g0156891 63.562 365 129 3 1 361 1 365 1.83e-175 492
Msa0004390 MtrunA17_Chr3g0142921 65.084 358 120 3 9 361 1 358 4.07e-175 491
Msa0004390 MtrunA17_Chr1g0156911 62.535 355 132 1 8 361 4 358 4.80e-175 490
Msa0004390 MtrunA17_Chr1g0156901 61.453 358 137 1 4 360 13 370 1.18e-173 487
Msa0004390 MtrunA17_Chr1g0156921 57.102 352 149 2 12 361 13 364 1.83e-157 446
Msa0004390 MtrunA17_Chr8g0371491 57.798 327 136 2 31 355 26 352 7.51e-139 399
Msa0004390 MtrunA17_Chr5g0405821 55.211 355 152 6 4 354 9 360 3.25e-136 392
Msa0004390 MtrunA17_Chr5g0405831 53.390 354 159 4 4 354 9 359 1.40e-132 383
Msa0004390 MtrunA17_Chr8g0371471 52.722 349 160 4 17 361 16 363 1.83e-129 375
Msa0004390 MtrunA17_Chr8g0371481 52.000 350 162 4 17 361 16 364 8.42e-129 373
Msa0004390 MtrunA17_Chr8g0341001 44.152 342 182 5 17 353 10 347 4.49e-99 297
Msa0004390 MtrunA17_Chr2g0283191 41.379 348 191 6 12 348 11 356 2.45e-96 291
Msa0004390 MtrunA17_Chr5g0438621 44.984 309 164 3 39 343 28 334 3.73e-96 290
Msa0004390 MtrunA17_Chr4g0046151 42.902 317 172 3 41 348 36 352 4.92e-96 290
Msa0004390 MtrunA17_Chr5g0438631 43.827 324 177 4 39 358 26 348 2.57e-95 288
Msa0004390 MtrunA17_Chr1g0157001 42.319 345 195 3 14 356 9 351 9.58e-95 287
Msa0004390 MtrunA17_Chr2g0330781 44.479 326 178 3 36 358 26 351 1.01e-94 286
Msa0004390 MtrunA17_Chr5g0432101 42.735 351 190 6 12 354 2 349 2.18e-93 283
Msa0004390 MtrunA17_Chr3g0120861 42.202 327 183 4 39 361 36 360 8.70e-93 281
Msa0004390 MtrunA17_Chr3g0105401 41.104 326 189 3 39 361 26 351 3.69e-92 280
Msa0004390 MtrunA17_Chr2g0320671 39.769 347 201 3 9 353 4 344 5.13e-91 276
Msa0004390 MtrunA17_Chr5g0438641 40.857 350 203 3 14 361 7 354 5.88e-91 276
Msa0004390 MtrunA17_Chr5g0437421 38.957 326 192 2 39 357 30 355 1.36e-84 260
Msa0004390 MtrunA17_Chr4g0027521 37.231 325 189 4 39 353 25 344 2.11e-68 218
Msa0004390 MtrunA17_Chr2g0285061 35.484 310 190 6 39 342 30 335 9.05e-66 212
Msa0004390 MtrunA17_Chr8g0374101 36.061 330 199 6 41 358 37 366 1.66e-64 209
Msa0004390 MtrunA17_Chr3g0086641 34.603 315 199 5 32 342 29 340 1.57e-63 206
Msa0004390 MtrunA17_Chr8g0380041 35.045 331 205 6 18 342 7 333 1.78e-63 206
Msa0004390 MtrunA17_Chr3g0077571 36.893 309 184 7 38 342 27 328 5.57e-63 205
Msa0004390 MtrunA17_Chr4g0017431 32.934 334 216 5 16 344 6 336 9.10e-62 202
Msa0004390 MtrunA17_Chr7g0275011 35.826 321 194 6 41 354 34 349 1.03e-61 202
Msa0004390 MtrunA17_Chr4g0008851 35.110 319 199 6 41 353 32 348 1.51e-61 201
Msa0004390 MtrunA17_Chr1g0182811 34.161 322 200 6 41 354 33 350 4.01e-61 200
Msa0004390 MtrunA17_Chr7g0275021 34.862 327 200 8 41 358 34 356 1.20e-60 199
Msa0004390 MtrunA17_Chr1g0189901 33.123 317 206 5 41 353 31 345 2.22e-59 196
Msa0004390 MtrunA17_Chr7g0274991 34.049 326 203 6 35 353 27 347 3.19e-59 195
Msa0004390 MtrunA17_Chr2g0294301 35.000 320 199 6 31 344 25 341 7.78e-59 194
Msa0004390 MtrunA17_Chr3g0077581 32.659 346 214 9 13 344 4 344 1.59e-58 194
Msa0004390 MtrunA17_Chr3g0099161 34.844 353 219 5 7 352 59 407 2.80e-58 194
Msa0004390 MtrunA17_Chr7g0275001 33.143 350 221 6 9 354 1 341 3.74e-58 192
Msa0004390 MtrunA17_Chr5g0396511 34.219 301 192 4 46 342 51 349 1.25e-57 191
Msa0004390 MtrunA17_Chr6g0457921 34.483 319 196 7 43 353 31 344 6.48e-57 189
Msa0004390 MtrunA17_Chr1g0189891 34.277 318 196 6 41 353 29 338 8.14e-57 189
Msa0004390 MtrunA17_Chr3g0131321 32.853 347 221 7 13 351 6 348 1.22e-56 189
Msa0004390 MtrunA17_Chr1g0189931 34.069 317 203 5 41 353 32 346 2.87e-56 187
Msa0004390 MtrunA17_Chr3g0099151 35.014 357 219 7 5 352 51 403 3.98e-56 189
Msa0004390 MtrunA17_Chr4g0068441 36.335 322 194 7 30 344 24 341 1.71e-55 186
Msa0004390 MtrunA17_Chr2g0294311 34.203 345 204 7 14 344 11 346 3.83e-55 185
Msa0004390 MtrunA17_Chr5g0434621 32.759 348 217 9 19 361 6 341 4.21e-54 181
Msa0004390 MtrunA17_Chr3g0092131 32.492 317 206 6 45 356 27 340 9.96e-54 181
Msa0004390 MtrunA17_Chr7g0215961 32.416 327 193 7 41 357 33 341 2.10e-53 180
Msa0004390 MtrunA17_Chr6g0463261 68.595 121 37 1 94 213 4 124 1.37e-52 170
Msa0004390 MtrunA17_Chr4g0060811 31.861 317 208 6 45 356 31 344 4.40e-52 177
Msa0004390 MtrunA17_Chr3g0099231 33.903 351 213 8 9 352 4 342 6.82e-52 177
Msa0004390 MtrunA17_Chr2g0284921 32.372 312 190 8 39 342 32 330 5.97e-48 166
Msa0004390 MtrunA17_Chr5g0444401 31.790 324 209 5 39 354 26 345 1.33e-47 165
Msa0004390 MtrunA17_Chr4g0027571 38.498 213 127 3 144 353 3 214 6.96e-47 159
Msa0004390 MtrunA17_Chr8g0344941 33.123 317 199 7 41 349 41 352 1.94e-46 162
Msa0004390 MtrunA17_Chr8g0380031 31.118 331 206 8 17 342 63 376 8.12e-45 159
Msa0004390 MtrunA17_Chr3g0085881 31.833 311 191 9 39 344 31 325 1.43e-44 156
Msa0004390 MtrunA17_Chr8g0349341 32.456 342 207 11 18 346 10 340 1.59e-44 157
Msa0004390 MtrunA17_Chr8g0344931 32.416 327 194 9 41 361 37 342 2.01e-44 156
Msa0004390 MtrunA17_Chr2g0301641 31.755 359 221 9 14 358 16 364 3.66e-44 157
Msa0004390 MtrunA17_Chr5g0420811 33.623 345 202 12 9 344 1 327 8.13e-44 154
Msa0004390 MtrunA17_Chr2g0284991 32.143 336 208 10 13 342 8 329 3.07e-43 154
Msa0004390 MtrunA17_Chr8g0349321 31.161 353 220 11 4 346 1 340 8.02e-42 149
Msa0004390 MtrunA17_Chr2g0284951 32.808 317 182 11 39 344 31 327 4.97e-40 145
Msa0004390 MtrunA17_Chr7g0229591 40.000 210 113 4 6 213 5 203 1.36e-38 137
Msa0004390 MtrunA17_Chr7g0229581 44.595 148 81 1 214 360 7 154 4.69e-38 134
Msa0004390 MtrunA17_Chr8g0370981 28.610 374 194 10 40 354 43 402 2.73e-36 136
Msa0004390 MtrunA17_Chr2g0285001 31.132 318 200 12 39 349 31 336 8.29e-36 134
Msa0004390 MtrunA17_Chr8g0349301 30.769 312 187 11 12 311 5 299 2.91e-35 131
Msa0004390 MtrunA17_Chr8g0370951 29.513 349 220 11 9 344 6 341 2.55e-34 129
Msa0004390 MtrunA17_Chr1g0160011 29.863 365 217 14 14 352 15 366 1.86e-33 127
Msa0004390 MtrunA17_Chr8g0349331 28.152 341 191 9 18 346 10 308 2.67e-33 126
Msa0004390 MtrunA17_Chr2g0284941 30.032 313 181 9 39 345 31 311 4.89e-33 126
Msa0004390 MtrunA17_Chr3g0085231 29.882 338 203 11 13 342 11 322 9.30e-33 125
Msa0004390 MtrunA17_Chr6g0469511 51.786 112 54 0 39 150 28 139 4.28e-31 115
Msa0004390 MtrunA17_Chr1g0160031 28.696 345 207 13 36 353 34 366 8.35e-31 120
Msa0004390 MtrunA17_Chr2g0301581 29.863 365 211 14 10 354 6 345 1.14e-30 119
Msa0004390 MtrunA17_Chr3g0104821 27.941 340 208 13 41 354 44 372 1.28e-30 120
Msa0004390 MtrunA17_Chr2g0283481 29.499 339 201 12 41 353 47 373 1.61e-30 120
Msa0004390 MtrunA17_Chr7g0254461 26.816 358 205 12 40 358 42 381 2.32e-30 119
Msa0004390 MtrunA17_Chr0c01g0489581 27.348 362 226 12 9 354 3 343 1.43e-29 116
Msa0004390 MtrunA17_Chr2g0317271 27.500 360 224 12 11 354 5 343 3.37e-29 115
Msa0004390 MtrunA17_Chr2g0301541 30.240 334 191 13 41 354 34 345 6.50e-29 115
Msa0004390 MtrunA17_Chr0c01g0489571 27.348 362 226 12 9 354 3 343 7.11e-29 114
Msa0004390 MtrunA17_Chr2g0317261 27.298 359 226 11 11 354 5 343 7.71e-29 114
Msa0004390 MtrunA17_Chr1g0159991 28.116 345 209 12 36 352 31 364 6.85e-28 112
Msa0004390 MtrunA17_Chr8g0381581 26.271 354 219 11 36 358 35 377 7.69e-28 112
Msa0004390 MtrunA17_Chr2g0283511 29.341 334 202 14 46 354 36 360 1.33e-27 112
Msa0004390 MtrunA17_Chr4g0018571 38.217 157 96 1 203 358 19 175 3.21e-27 105
Msa0004390 MtrunA17_Chr1g0160101 27.202 386 221 17 4 352 9 371 3.51e-27 110
Msa0004390 MtrunA17_Chr3g0112821 27.410 332 212 11 41 354 30 350 3.67e-27 110
Msa0004390 MtrunA17_Chr1g0191461 25.886 367 235 12 18 359 12 366 5.79e-27 109
Msa0004390 MtrunA17_Chr6g0469521 42.149 121 69 1 215 334 32 152 7.92e-27 103
Msa0004390 MtrunA17_Chr7g0273101 27.920 351 205 16 36 353 24 359 9.80e-27 109
Msa0004390 MtrunA17_Chr4g0027561 47.244 127 57 2 6 132 5 121 2.24e-26 102
Msa0004390 MtrunA17_Chr1g0159981 28.161 348 197 14 40 352 45 374 2.81e-26 108
Msa0004390 MtrunA17_Chr6g0450731 26.359 368 236 14 9 358 1 351 4.83e-26 107
Msa0004390 MtrunA17_Chr2g0283501 28.190 337 211 13 41 354 31 359 1.55e-25 105
Msa0004390 MtrunA17_Chr7g0271551 28.443 334 203 14 40 354 34 350 2.30e-25 105
Msa0004390 MtrunA17_Chr6g0450721 27.147 361 232 13 14 359 6 350 3.87e-25 104
Msa0004390 MtrunA17_Chr3g0093031 27.463 335 213 13 41 354 30 355 7.04e-25 103
Msa0004390 MtrunA17_Chr1g0159971 27.666 347 198 12 41 352 47 375 8.38e-25 104
Msa0004390 MtrunA17_Chr8g0370961 26.415 212 150 4 135 344 11 218 9.19e-25 101
Msa0004390 MtrunA17_Chr7g0226941 27.298 359 221 12 24 353 16 363 1.59e-24 103
Msa0004390 MtrunA17_Chr7g0226911 26.835 395 217 17 13 358 3 374 4.55e-24 102
Msa0004390 MtrunA17_Chr1g0198351 26.446 363 228 14 14 361 13 351 2.72e-23 99.4
Msa0004390 MtrunA17_Chr6g0450701 26.166 386 221 16 9 353 1 363 1.72e-22 97.4
Msa0004390 MtrunA17_Chr6g0450711 26.513 347 203 14 40 354 121 447 1.90e-22 98.2
Msa0004390 MtrunA17_Chr4g0057991 25.337 371 239 14 7 354 6 361 1.91e-22 97.4
Msa0004390 MtrunA17_Chr2g0301551 29.825 285 161 11 90 354 36 301 2.19e-22 96.3
Msa0004390 MtrunA17_Chr8g0352901 24.528 371 240 10 9 353 1 357 2.20e-22 97.1
Msa0004390 MtrunA17_Chr4g0027581 35.374 147 72 2 230 353 41 187 2.93e-22 93.6
Msa0004390 MtrunA17_Chr3g0112691 27.746 346 196 16 41 354 30 353 4.63e-22 95.9
Msa0004390 MtrunA17_Chr7g0275291 26.801 347 201 14 41 353 33 360 5.11e-22 96.3
Msa0004390 MtrunA17_Chr1g0178931 24.316 329 221 12 42 361 38 347 1.22e-21 94.7
Msa0004390 MtrunA17_Chr7g0226931 26.575 365 207 15 41 358 38 388 1.85e-21 94.7
Msa0004390 MtrunA17_Chr6g0455661 32.240 183 115 5 168 345 269 447 4.39e-21 94.4
Msa0004390 MtrunA17_Chr6g0455661 40.972 144 73 6 19 155 6 144 2.72e-18 85.9
Msa0004390 MtrunA17_Chr6g0459921 32.240 183 115 5 168 345 158 336 4.96e-21 93.2
Msa0004390 MtrunA17_Chr2g0301571 29.123 285 163 12 90 354 36 301 1.46e-20 90.9
Msa0004390 MtrunA17_Chr5g0440501 27.803 223 145 4 141 351 11 229 1.55e-20 89.7
Msa0004390 MtrunA17_Chr2g0283531 24.931 361 244 13 14 354 5 358 2.25e-20 91.3
Msa0004390 MtrunA17_Chr7g0266061 25.231 325 212 13 39 352 40 344 3.29e-20 90.5
Msa0004390 MtrunA17_Chr3g0096551 25.459 381 228 15 15 354 1 366 3.80e-20 90.9
Msa0004390 MtrunA17_Chr1g0178941 24.189 339 217 12 42 361 41 358 6.86e-20 89.7
Msa0004390 MtrunA17_Chr8g0347751 26.554 354 207 14 41 358 36 372 9.18e-20 89.7
Msa0004390 MtrunA17_Chr1g0189921 48.276 87 44 1 41 127 31 116 1.20e-18 82.0
Msa0004390 MtrunA17_Chr8g0339251 24.927 341 222 12 9 333 1 323 2.06e-18 85.1
Msa0004390 MtrunA17_Chr2g0321991 48.889 90 44 2 39 127 31 119 3.06e-18 80.1
Msa0004390 MtrunA17_Chr3g0104831 26.103 272 166 11 109 354 29 291 2.39e-17 81.6
Msa0004390 MtrunA17_Chr2g0301591 29.730 296 157 13 10 285 6 270 7.36e-17 80.1
Msa0004390 MtrunA17_Chr1g0198381 24.169 331 210 12 42 355 3 309 5.00e-16 77.8
Msa0004390 MtrunA17_Chr5g0432081 50.794 63 30 1 292 354 3 64 1.28e-15 71.2
Msa0004390 MtrunA17_Chr4g0018561 49.367 79 32 2 14 90 7 79 6.21e-14 67.4
Msa0004390 MtrunA17_Chr8g0370971 40.385 104 58 1 40 139 37 140 1.34e-13 68.2
Msa0004390 MtrunA17_Chr1g0189911 28.800 125 87 2 230 353 5 128 4.99e-13 66.2
Msa0004390 MtrunA17_Chr7g0228261 40.909 66 39 0 289 354 10 75 5.92e-13 64.3
Msa0004390 MtrunA17_Chr2g0308201 46.341 82 35 2 13 94 15 87 1.32e-12 63.2
Msa0004390 MtrunA17_Chr3g0104801 33.099 142 82 5 41 175 44 179 1.41e-12 65.5
Msa0004390 MtrunA17_Chr2g0301561 29.907 214 123 9 90 285 36 240 9.59e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004390 AT1G75900.1 60.519 347 134 2 18 361 18 364 2.66e-158 449
Msa0004390 AT1G75880.2 56.022 357 155 2 6 360 17 373 4.09e-145 416
Msa0004390 AT1G75880.1 55.866 358 155 3 6 360 17 374 2.93e-143 411
Msa0004390 AT1G75890.2 52.925 359 166 3 2 357 8 366 3.59e-141 405
Msa0004390 AT1G75890.3 52.925 359 166 3 2 357 37 395 5.99e-141 405
Msa0004390 AT5G42170.1 56.418 335 143 2 28 361 37 369 2.21e-140 403
Msa0004390 AT1G75890.1 51.075 372 166 4 2 357 8 379 1.14e-137 397
Msa0004390 AT3G14820.1 52.326 344 160 3 14 356 5 345 6.84e-127 368
Msa0004390 AT1G59406.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0004390 AT1G59030.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0004390 AT1G58725.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0004390 AT1G20120.1 54.206 321 145 2 36 354 73 393 3.83e-125 366
Msa0004390 AT1G20132.1 53.517 327 150 2 36 360 56 382 1.12e-121 356
Msa0004390 AT1G58520.3 51.807 332 148 5 31 360 20 341 4.62e-117 343
Msa0004390 AT1G58525.1 51.807 332 148 5 31 360 20 341 4.62e-117 343
Msa0004390 AT3G43570.1 49.547 331 135 4 31 360 20 319 3.00e-114 335
Msa0004390 AT2G04570.1 43.235 340 183 4 30 361 13 350 3.14e-99 298
Msa0004390 AT1G20130.2 45.104 337 170 4 36 360 179 512 6.14e-96 295
Msa0004390 AT1G20130.1 45.104 337 170 4 36 360 199 532 1.67e-95 294
Msa0004390 AT3G43550.1 52.963 270 123 3 31 299 20 286 1.90e-95 286
Msa0004390 AT5G63170.1 48.710 310 143 5 39 345 26 322 3.83e-95 287
Msa0004390 AT5G03810.1 45.912 318 169 3 39 353 28 345 4.65e-95 287
Msa0004390 AT1G73610.1 43.902 328 167 5 36 360 30 343 2.65e-93 283
Msa0004390 AT5G45960.1 42.857 329 182 3 38 360 44 372 7.70e-93 282
Msa0004390 AT1G06990.1 41.975 324 185 2 40 360 36 359 1.45e-92 281
Msa0004390 AT3G16370.1 43.385 325 181 3 39 360 28 352 2.38e-92 280
Msa0004390 AT5G22810.1 41.279 344 197 3 15 353 8 351 6.89e-92 280
Msa0004390 AT2G30310.1 44.000 325 175 5 40 357 33 357 3.50e-91 278
Msa0004390 AT2G40250.1 42.683 328 180 3 35 355 30 356 3.05e-90 275
Msa0004390 AT2G31540.1 42.486 346 192 5 4 345 1 343 2.52e-89 273
Msa0004390 AT5G03820.1 44.201 319 174 3 39 353 31 349 6.72e-89 272
Msa0004390 AT4G26790.1 40.841 333 194 3 31 360 18 350 9.29e-89 271
Msa0004390 AT4G26790.2 40.841 333 194 3 31 360 18 350 9.29e-89 271
Msa0004390 AT5G03820.2 44.201 319 174 3 39 353 59 377 1.92e-88 271
Msa0004390 AT2G30220.1 44.000 325 175 5 40 357 32 356 2.03e-88 270
Msa0004390 AT2G42990.1 41.745 321 181 3 39 355 26 344 3.06e-88 270
Msa0004390 AT1G58430.1 42.462 325 180 4 40 357 34 358 3.30e-86 265
Msa0004390 AT1G23500.1 44.860 321 163 4 36 354 30 338 4.50e-86 264
Msa0004390 AT2G24560.1 40.503 358 205 6 9 358 1 358 2.02e-85 263
Msa0004390 AT3G53100.1 39.710 345 197 4 18 358 11 348 3.88e-84 259
Msa0004390 AT1G20135.1 40.127 314 174 5 38 349 26 327 7.63e-79 245
Msa0004390 AT1G75920.2 40.683 322 179 4 36 354 24 336 2.73e-78 244
Msa0004390 AT5G45950.1 37.538 333 198 6 30 357 29 356 1.04e-74 235
Msa0004390 AT1G75920.1 38.872 337 179 5 36 354 19 346 3.45e-74 234
Msa0004390 AT1G75910.1 39.009 323 184 5 36 354 23 336 5.40e-71 225
Msa0004390 AT4G28780.1 33.237 346 226 4 11 353 2 345 3.04e-66 214
Msa0004390 AT3G50400.1 35.043 351 218 6 13 353 6 356 6.15e-66 213
Msa0004390 AT1G29670.1 35.777 341 203 11 12 344 3 335 3.00e-65 211
Msa0004390 AT5G08460.1 33.524 349 221 5 1 342 12 356 3.83e-65 211
Msa0004390 AT1G75920.4 38.567 293 168 4 65 354 25 308 1.01e-64 208
Msa0004390 AT1G29670.2 35.777 341 203 11 12 344 71 403 2.03e-64 211
Msa0004390 AT5G45670.1 35.897 312 190 6 39 344 27 334 2.19e-64 209
Msa0004390 AT4G18970.1 36.538 312 188 6 39 344 26 333 1.15e-63 207
Msa0004390 AT4G18970.2 36.538 312 188 6 39 344 26 333 4.30e-63 207
Msa0004390 AT5G33370.1 35.671 328 199 6 33 353 22 344 1.99e-62 204
Msa0004390 AT2G24560.2 39.865 296 173 5 9 299 1 296 5.92e-62 201
Msa0004390 AT2G23540.1 33.427 356 219 7 5 344 7 360 1.57e-61 202
Msa0004390 AT1G75930.1 38.994 318 174 8 36 346 24 328 1.12e-60 199
Msa0004390 AT1G75920.3 34.557 327 171 5 31 354 19 305 1.15e-60 197
Msa0004390 AT1G71691.2 36.218 312 183 8 39 343 53 355 1.49e-60 199
Msa0004390 AT1G33811.1 33.143 350 207 11 14 344 3 344 1.92e-60 199
Msa0004390 AT5G55050.1 37.386 329 189 8 37 353 35 358 2.70e-60 199
Msa0004390 AT4G10950.2 33.754 317 206 3 39 352 69 384 4.04e-60 199
Msa0004390 AT1G71250.1 35.514 321 196 5 39 355 39 352 8.19e-60 197
Msa0004390 AT1G29660.1 33.033 333 208 7 17 344 14 336 2.72e-58 193
Msa0004390 AT5G15720.1 35.185 324 200 7 39 355 28 348 9.17e-58 192
Msa0004390 AT5G41890.1 35.347 331 186 7 45 354 35 358 1.20e-57 192
Msa0004390 AT5G18430.1 32.378 349 227 5 9 353 1 344 1.53e-57 191
Msa0004390 AT3G04290.1 32.312 359 220 7 2 353 1 343 4.48e-57 190
Msa0004390 AT4G10950.1 32.808 317 205 3 39 352 69 380 1.94e-56 189
Msa0004390 AT1G74460.1 32.492 317 206 6 45 356 27 340 1.11e-53 181
Msa0004390 AT5G37690.1 31.385 325 213 7 34 353 20 339 1.36e-53 181
Msa0004390 AT2G31550.1 42.574 202 113 3 147 345 1 202 1.07e-51 171
Msa0004390 AT5G37690.2 30.769 325 207 8 34 353 20 331 9.20e-49 168
Msa0004390 AT1G53920.1 30.836 347 227 8 13 352 21 361 1.12e-48 169
Msa0004390 AT1G71120.1 33.746 323 199 8 38 354 28 341 6.14e-48 166
Msa0004390 AT5G33370.2 35.766 274 164 6 33 299 22 290 3.89e-46 160
Msa0004390 AT2G19010.1 32.692 312 184 11 39 342 28 321 3.07e-45 159
Msa0004390 AT2G19010.2 32.692 312 184 11 39 342 58 351 4.56e-45 159
Msa0004390 AT2G03980.2 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0004390 AT2G03980.3 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0004390 AT2G03980.1 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0004390 AT2G03980.4 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0004390 AT2G19060.1 31.889 323 196 11 39 353 28 334 9.27e-44 155
Msa0004390 AT2G19050.1 31.746 315 187 11 39 344 29 324 1.06e-43 154
Msa0004390 AT1G71691.3 35.075 268 158 8 39 299 53 311 5.09e-41 146
Msa0004390 AT5G15720.2 34.831 267 164 7 40 299 29 292 1.25e-38 140
Msa0004390 AT1G71691.1 32.129 249 155 6 102 343 13 254 2.92e-38 138
Msa0004390 AT3G14225.2 28.923 325 207 8 41 350 37 352 3.53e-38 140
Msa0004390 AT4G30140.1 32.581 310 185 12 39 342 31 322 4.39e-38 139
Msa0004390 AT3G14225.1 28.571 329 207 8 41 350 37 356 1.42e-37 139
Msa0004390 AT4G16230.1 38.095 231 132 5 13 238 6 230 3.00e-37 135
Msa0004390 AT5G40990.1 28.660 321 213 8 41 350 37 352 1.30e-36 136
Msa0004390 AT1G53940.2 28.972 321 212 8 41 350 39 354 8.42e-36 134
Msa0004390 AT5G15720.3 30.651 261 174 5 102 355 57 317 1.13e-35 133
Msa0004390 AT2G19050.2 31.890 254 155 8 39 286 29 270 1.61e-34 128
Msa0004390 AT3G05180.1 28.739 341 207 10 40 353 35 366 3.28e-33 127
Msa0004390 AT1G28610.2 30.588 340 198 13 41 354 31 358 3.37e-32 124
Msa0004390 AT2G04020.1 38.164 207 106 7 40 236 42 236 1.74e-31 120
Msa0004390 AT1G53990.1 26.562 320 214 8 41 350 35 343 7.54e-31 120
Msa0004390 AT1G54790.3 27.378 347 204 14 40 353 31 362 9.65e-31 120
Msa0004390 AT2G04020.2 38.164 207 106 7 40 236 42 236 1.02e-30 119
Msa0004390 AT2G27360.1 30.383 339 200 12 41 353 33 361 4.18e-29 116
Msa0004390 AT1G28600.1 29.586 338 202 14 41 353 31 357 3.14e-28 114
Msa0004390 AT1G31550.2 28.614 339 206 14 41 354 36 363 3.25e-28 114
Msa0004390 AT1G28580.1 29.651 344 195 16 41 353 37 364 3.65e-28 114
Msa0004390 AT1G28640.1 29.204 339 203 15 41 353 35 362 6.29e-28 113
Msa0004390 AT1G28590.1 28.529 340 206 13 41 354 36 364 7.64e-28 113
Msa0004390 AT1G28670.1 29.674 337 205 14 41 353 35 363 1.46e-27 112
Msa0004390 AT1G54000.1 27.619 315 207 6 36 344 31 330 3.70e-27 111
Msa0004390 AT1G28650.1 29.058 382 232 19 4 358 1 370 8.45e-27 110
Msa0004390 AT1G54030.1 27.832 309 192 10 42 344 53 336 2.71e-26 108
Msa0004390 AT1G54010.1 28.391 317 198 9 39 344 32 330 3.34e-26 108
Msa0004390 AT1G28570.1 28.297 364 222 14 17 354 12 362 9.99e-26 107
Msa0004390 AT3G26430.1 27.540 374 209 14 9 342 1 352 1.19e-25 106
Msa0004390 AT1G28660.1 28.783 337 207 14 41 353 35 362 1.29e-25 106
Msa0004390 AT5G14450.1 26.984 378 232 14 10 358 14 376 1.86e-25 106
Msa0004390 AT1G54790.1 26.074 349 206 15 40 353 30 361 2.88e-25 105
Msa0004390 AT1G09390.1 29.132 357 221 13 5 344 3 344 4.22e-25 105
Msa0004390 AT1G56670.1 27.485 342 208 13 40 359 39 362 4.80e-25 104
Msa0004390 AT1G31550.1 27.434 339 207 14 41 354 36 360 6.28e-25 104
Msa0004390 AT5G03610.1 25.749 334 214 12 42 361 44 357 7.23e-25 104
Msa0004390 AT1G54020.2 27.070 314 203 10 38 344 28 322 9.75e-25 103
Msa0004390 AT1G28660.2 28.783 337 206 15 41 353 35 361 2.89e-24 102
Msa0004390 AT1G53940.1 28.571 266 182 6 41 302 39 300 4.63e-24 100
Msa0004390 AT3G62280.1 27.746 346 195 16 40 356 35 354 3.66e-23 99.4
Msa0004390 AT3G09930.2 26.686 341 214 12 30 357 32 349 7.59e-23 98.6
Msa0004390 AT3G09930.1 26.686 341 214 12 30 357 32 349 7.59e-23 98.6
Msa0004390 AT4G01130.1 25.789 380 221 14 17 358 14 370 8.39e-23 98.6
Msa0004390 AT5G45910.1 28.415 366 225 16 17 354 7 363 2.38e-22 97.4
Msa0004390 AT1G67830.1 24.642 349 211 13 40 352 29 361 2.36e-21 94.4
Msa0004390 AT5G03600.1 26.730 318 203 12 39 348 12 307 3.31e-21 93.2
Msa0004390 AT5G03600.2 26.730 318 203 12 39 348 47 342 5.35e-21 93.2
Msa0004390 AT3G27950.1 25.770 357 226 12 27 358 18 360 2.64e-20 91.7
Msa0004390 AT1G54790.2 24.267 375 206 16 40 353 30 387 3.79e-20 91.3
Msa0004390 AT4G16233.1 43.434 99 55 1 247 344 5 103 4.54e-20 85.5
Msa0004390 AT3G14210.1 28.485 330 194 15 35 348 33 336 6.47e-19 87.8
Msa0004390 AT4G01130.3 25.694 288 174 9 105 358 3 284 8.79e-18 83.2
Msa0004390 AT4G16220.1 48.315 89 44 1 39 127 28 114 4.21e-17 80.5
Msa0004390 AT1G54030.2 26.996 263 163 8 42 298 53 292 4.54e-17 81.3
Msa0004390 AT1G56670.2 27.076 277 167 11 40 299 39 297 1.27e-15 77.0
Msa0004390 AT2G36325.1 24.620 329 206 13 42 353 48 351 2.76e-15 76.6
Msa0004390 AT4G01130.2 26.032 315 185 13 41 326 34 329 2.98e-15 76.3
Msa0004390 AT3G14220.1 24.930 357 217 14 16 350 5 332 5.01e-14 72.8
Msa0004390 AT1G54020.1 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0004390 AT1G54020.5 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0004390 AT1G54020.3 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0004390 AT1G28580.2 26.695 236 140 11 139 353 60 283 1.94e-13 70.9
Msa0004390 AT3G62280.2 26.148 283 160 14 40 299 35 291 2.04e-13 70.5
Msa0004390 AT5G03980.1 25.941 239 153 8 136 360 90 318 3.84e-13 70.1
Msa0004390 AT1G54020.4 28.000 150 101 4 199 344 41 187 3.65e-12 65.9
Msa0004390 AT1G28600.2 34.286 175 95 10 18 180 9 175 3.75e-11 62.8
Msa0004390 AT1G28610.1 33.766 154 84 7 39 180 29 176 6.73e-11 62.4
Msa0004390 AT1G28570.3 25.490 204 131 7 167 354 1 199 9.67e-11 61.6

Find 85 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAATATTTCTTTCTATT+TGG 0.138549 1_1:+6893525 Msa0004390:three_prime_UTR
AACTCATCAAAATACAAATT+TGG 0.243337 1_1:-6893412 None:intergenic
GGAGTATGTACCTGCATATT+TGG 0.251645 1_1:+6891743 Msa0004390:CDS
ATGCTTCAGAATACGTCTTT+TGG 0.268336 1_1:+6893251 Msa0004390:CDS
AATATAAACTATCCTGCTAT+TGG 0.271340 1_1:-6892727 None:intergenic
AGATCACTGGATTTGAGATT+TGG 0.274463 1_1:-6891768 None:intergenic
GGAGATTCAATAGTTGATTC+AGG 0.282268 1_1:+6888603 Msa0004390:CDS
GGCTTTGCCTCTGGAGCTTC+AGG 0.285343 1_1:+6891804 Msa0004390:CDS
TGGTGAGGGTGATTGTTTAA+TGG 0.289483 1_1:+6893471 Msa0004390:three_prime_UTR
AAATCCAGTGATCTTCTTAC+AGG 0.317537 1_1:+6891777 Msa0004390:CDS
AAATGCAATTTCCCTCCTTA+TGG 0.328590 1_1:+6888654 Msa0004390:CDS
TCTGGCATGAACAACATAAT+AGG 0.347030 1_1:-6892160 None:intergenic
TAAGTATGATATAATGCTTT+AGG 0.348716 1_1:-6888395 None:intergenic
GTTGGAGGAGCTAGCTAGTA+TGG 0.367220 1_1:+6888449 Msa0004390:exon
TTTACTTGCAGCTGAACAAT+TGG 0.371511 1_1:+6891713 Msa0004390:intron
GTTCCAGCAGTGATAGCATT+TGG 0.381837 1_1:+6888582 Msa0004390:CDS
ATCTGCTCAAATATCTTTCA+AGG 0.398464 1_1:-6893324 None:intergenic
AGTTACCTTTACAAAATTAG+TGG 0.409175 1_1:-6892229 None:intergenic
TGATTGTTTAAGTATTTCAT+TGG 0.409267 1_1:+6893451 Msa0004390:three_prime_UTR
CCATCACAGAGAACTCTTGC+AGG 0.411427 1_1:+6892606 Msa0004390:CDS
AATAGAAAGAAATATTTCAT+AGG 0.417636 1_1:-6893522 None:intergenic
ATATAAACTATCCTGCTATT+GGG 0.437929 1_1:-6892726 None:intergenic
ATCAGAAATGAAGTAGTCAT+TGG 0.448951 1_1:-6888489 None:intergenic
ACAGGCGTAGGCTTTGCCTC+TGG 0.460900 1_1:+6891795 Msa0004390:CDS
TTTCAAGGTGGTGTCCCAAC+TGG 0.461503 1_1:+6888684 Msa0004390:CDS
ATGTCTAGTTGAGCAGATAA+TGG 0.462544 1_1:-6892024 None:intergenic
CATTGCAAAATCGACCAGTT+GGG 0.467454 1_1:-6888698 None:intergenic
AGGAAGAAAGAAGTGTTTGT+TGG 0.467775 1_1:+6888431 Msa0004390:five_prime_UTR
CCTTGAAAATCTTTGCCATA+AGG 0.472764 1_1:-6888669 None:intergenic
GTACTGAGTGCACCACCAAT+TGG 0.474419 1_1:+6892576 Msa0004390:CDS
TCAGAACAAGTAGCATCTAA+AGG 0.482084 1_1:-6893229 None:intergenic
TACAAAATTAGTGGCTGAGT+TGG 0.482731 1_1:-6892220 None:intergenic
GGGAAGTTGAAAGGAATTGT+TGG 0.482912 1_1:+6892063 Msa0004390:CDS
AGCTGAACAATTGGGTATCA+AGG 0.484175 1_1:+6891722 Msa0004390:intron
CAATAACGACCTCAAAACTT+TGG 0.489567 1_1:+6888629 Msa0004390:CDS
AGATTTGGATCCAAATATGC+AGG 0.491272 1_1:-6891753 None:intergenic
CCATTGCAAAATCGACCAGT+TGG 0.494511 1_1:-6888699 None:intergenic
AGGAATGTCATATTGCAATC+TGG 0.497840 1_1:-6892178 None:intergenic
ACATGTTCAAAGAATACATT+GGG 0.499245 1_1:+6892043 Msa0004390:CDS
TTACTTGCAGCTGAACAATT+GGG 0.499390 1_1:+6891714 Msa0004390:intron
TTTAAGTATTTCATTGGTGA+GGG 0.500685 1_1:+6893457 Msa0004390:three_prime_UTR
TTTCTATATGCTCGTTCTGT+AGG 0.500946 1_1:-6893286 None:intergenic
TCTCCAAATGCTATCACTGC+TGG 0.502033 1_1:-6888585 None:intergenic
CAGAACAAGTAGCATCTAAA+GGG 0.502089 1_1:-6893228 None:intergenic
GCTGGAACTGTAACATTTGG+TGG 0.503557 1_1:-6888567 None:intergenic
ATACTTATAATTTCTGTCAC+AGG 0.505345 1_1:+6888411 Msa0004390:five_prime_UTR
AATTGCAGGCTTCAAAGTTG+TGG 0.512171 1_1:+6893156 Msa0004390:intron
CCTGCAAGAGTTCTCTGTGA+TGG 0.518882 1_1:-6892606 None:intergenic
GTCAGAACTCACCCAATAGC+AGG 0.522356 1_1:+6892715 Msa0004390:CDS
ACCGCTATTTGTGGTGTCAA+AGG 0.522728 1_1:-6891834 None:intergenic
GACAGAGGTTGTTGTGGCAC+AGG 0.524250 1_1:+6893178 Msa0004390:CDS
AAGAAAGAAGTGTTTGTTGG+AGG 0.525312 1_1:+6888434 Msa0004390:five_prime_UTR
ACTGCTGGAACTGTAACATT+TGG 0.526783 1_1:-6888570 None:intergenic
ATGCAAATAATACAATGAAA+CGG 0.527516 1_1:-6888512 None:intergenic
GGATAGGAAATATATAAACT+TGG 0.528249 1_1:+6892537 Msa0004390:intron
GACATAAGATCAGTGTAAGC+AGG 0.531306 1_1:-6892198 None:intergenic
GTTTAAGTATTTCATTGGTG+AGG 0.534660 1_1:+6893456 Msa0004390:three_prime_UTR
TGTGATGGCACACATCCAAT+TGG 0.535323 1_1:-6892591 None:intergenic
GGAAAGAACAAACTTCATAC+TGG 0.540634 1_1:+6892089 Msa0004390:CDS
AAAATCCCCTCAGATATACT+TGG 0.543755 1_1:+6888723 Msa0004390:CDS
AATGATGTGATATATATGAT+TGG 0.544119 1_1:-6893646 None:intergenic
GAGAGTACCAAGTATATCTG+AGG 0.544723 1_1:-6888730 None:intergenic
TGAAAATCTTTGCCATAAGG+AGG 0.545046 1_1:-6888666 None:intergenic
GAATACATTGGGAAGTTGAA+AGG 0.545870 1_1:+6892054 Msa0004390:CDS
ATGAACAACATAATAGGTGT+TGG 0.552774 1_1:-6892154 None:intergenic
TACGCCTGTAAGAAGATCAC+TGG 0.554567 1_1:-6891781 None:intergenic
TGCATTGTGCTACAAAACGA+AGG 0.567143 1_1:+6888530 Msa0004390:CDS
GAAAATCTTTGCCATAAGGA+GGG 0.574938 1_1:-6888665 None:intergenic
AGAGTACCAAGTATATCTGA+GGG 0.575632 1_1:-6888729 None:intergenic
AGTGATCTTCTTACAGGCGT+AGG 0.576669 1_1:+6891783 Msa0004390:CDS
GCATTGTGCTACAAAACGAA+GGG 0.592507 1_1:+6888531 Msa0004390:CDS
GGCTTCAAAGTTGTGGACAG+AGG 0.599995 1_1:+6893163 Msa0004390:intron
TTACAAATTACAATGTACAA+TGG 0.603132 1_1:+6893609 Msa0004390:three_prime_UTR
GACATGTTCAAAGAATACAT+TGG 0.607658 1_1:+6892042 Msa0004390:CDS
TCCTTTGACACCACAAATAG+CGG 0.614050 1_1:+6891833 Msa0004390:CDS
CACAGAGAACTCTTGCAGGA+GGG 0.614252 1_1:+6892610 Msa0004390:CDS
ACAGAGGTTGTTGTGGCACA+GGG 0.618045 1_1:+6893179 Msa0004390:CDS
GTTGAAAGGAATTGTTGGTG+AGG 0.620179 1_1:+6892068 Msa0004390:CDS
TCACAGAGAACTCTTGCAGG+AGG 0.631897 1_1:+6892609 Msa0004390:CDS
ATCGTATCCTGAAGCTCCAG+AGG 0.633985 1_1:-6891811 None:intergenic
TTGACAATGATATCAAGTAG+AGG 0.653200 1_1:-6892762 None:intergenic
GATGGCACACATCCAATTGG+TGG 0.659053 1_1:-6892588 None:intergenic
TTGTGGCACAGGGAAACTAG+AGG 0.676349 1_1:+6893189 Msa0004390:CDS
GTTGTGGACAGAGGTTGTTG+TGG 0.717058 1_1:+6893172 Msa0004390:CDS
GAGTACCAAGTATATCTGAG+GGG 0.751977 1_1:-6888728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATTTATTATACATTAA+GGG - chr1_1:6889468-6889487 None:intergenic 10.0%
!! TGATAATTTATTATACATTA+AGG - chr1_1:6889469-6889488 None:intergenic 10.0%
!! AAATGATTAAAACAAATATT+AGG - chr1_1:6889955-6889974 None:intergenic 10.0%
!! AAATATTAGATAAATGATAA+AGG + chr1_1:6890084-6890103 Msa0004390:intron 10.0%
!!! TTTTTAAATTTAAGATTGAA+TGG - chr1_1:6891080-6891099 None:intergenic 10.0%
!! ATTAAAAATTGAAACTATAT+CGG - chr1_1:6892481-6892500 None:intergenic 10.0%
!!! GTCAACTTTTTTTTATAAAT+AGG - chr1_1:6889300-6889319 None:intergenic 15.0%
!!! GAAATTATATTTTCATACTT+TGG + chr1_1:6889641-6889660 Msa0004390:intron 15.0%
!!! ATTTTAGTGTAAATGTTTAA+TGG - chr1_1:6889828-6889847 None:intergenic 15.0%
!! AACAAATATATAATACTTAC+TGG + chr1_1:6890602-6890621 Msa0004390:intron 15.0%
!!! GCTTTTTATTTTATAGAAAT+GGG + chr1_1:6892292-6892311 Msa0004390:intron 15.0%
!! TCTGTTTATGATAAAAAAAA+AGG - chr1_1:6893061-6893080 None:intergenic 15.0%
!!! GTTATTTTATCATATTTCTA+TGG + chr1_1:6893384-6893403 Msa0004390:three_prime_UTR 15.0%
!! AATAGAAAGAAATATTTCAT+AGG - chr1_1:6893525-6893544 None:intergenic 15.0%
!! ATGAAATATTTCTTTCTATT+TGG + chr1_1:6893525-6893544 Msa0004390:three_prime_UTR 15.0%
!! ATGCAAATAATACAATGAAA+CGG - chr1_1:6888515-6888534 None:intergenic 20.0%
!!! TTTCTAGGTTAAAACTTTTT+TGG + chr1_1:6888897-6888916 Msa0004390:intron 20.0%
!! TAAACTTCAAAGCAAAATAA+CGG + chr1_1:6888981-6889000 Msa0004390:intron 20.0%
!! GAAAAAAATTGTTTATAGCA+GGG + chr1_1:6889129-6889148 Msa0004390:intron 20.0%
!! AAAAAAATTGTTTATAGCAG+GGG + chr1_1:6889130-6889149 Msa0004390:intron 20.0%
!!! CTTTTTTTTATAAATAGGAC+CGG - chr1_1:6889295-6889314 None:intergenic 20.0%
!!! GTTGGAAATAATTTTATTGA+TGG - chr1_1:6889774-6889793 None:intergenic 20.0%
!! TTAAAATTAGGTAAGGATAT+AGG - chr1_1:6889862-6889881 None:intergenic 20.0%
!! ACTGAAATTAAAATTAGGTA+AGG - chr1_1:6889869-6889888 None:intergenic 20.0%
!! AAACGACTGAAATTAAAATT+AGG - chr1_1:6889874-6889893 None:intergenic 20.0%
!! AATATTAGGTAAAAAGATGA+AGG - chr1_1:6889941-6889960 None:intergenic 20.0%
!! GAATGACGAAAATATAATTT+AGG + chr1_1:6890530-6890549 Msa0004390:intron 20.0%
!! ACAATTTCATGAACTAAATT+TGG - chr1_1:6891048-6891067 None:intergenic 20.0%
!!! TTTAGTTCATGAAATTGTAA+TGG + chr1_1:6891050-6891069 Msa0004390:intron 20.0%
!!! TTTTTGTCACATTTATATCT+AGG + chr1_1:6891131-6891150 Msa0004390:intron 20.0%
!!! TAACTTGCATTATTTTTGTT+TGG - chr1_1:6891298-6891317 None:intergenic 20.0%
!!! CACAATTGACAAATTTTAAT+TGG - chr1_1:6891479-6891498 None:intergenic 20.0%
!! TATGAATATGTGTTTATAAG+TGG - chr1_1:6891622-6891641 None:intergenic 20.0%
!!! TATCATATGTATGTCATTTA+AGG + chr1_1:6891640-6891659 Msa0004390:intron 20.0%
!!! GGCTTTTTATTTTATAGAAA+TGG + chr1_1:6892291-6892310 Msa0004390:intron 20.0%
!! GTACAAGATATTTAAAAGAA+GGG + chr1_1:6892334-6892353 Msa0004390:intron 20.0%
!! TTTCGATAAGTTTAAATCAT+TGG + chr1_1:6892445-6892464 Msa0004390:intron 20.0%
!!! AATAGGAATTACCATATTTT+TGG - chr1_1:6892791-6892810 None:intergenic 20.0%
!! TGACTAAGTTAAGATATAAT+AGG - chr1_1:6892808-6892827 None:intergenic 20.0%
!!! GTATTTATTTTTTGAATTGC+AGG + chr1_1:6893142-6893161 Msa0004390:intron 20.0%
!! AACTCATCAAAATACAAATT+TGG - chr1_1:6893415-6893434 None:intergenic 20.0%
!! TGATTGTTTAAGTATTTCAT+TGG + chr1_1:6893451-6893470 Msa0004390:three_prime_UTR 20.0%
!! TTACAAATTACAATGTACAA+TGG + chr1_1:6893609-6893628 Msa0004390:three_prime_UTR 20.0%
!! AATGATGTGATATATATGAT+TGG - chr1_1:6893649-6893668 None:intergenic 20.0%
! ATACTTATAATTTCTGTCAC+AGG + chr1_1:6888411-6888430 Msa0004390:five_prime_UTR 25.0%
!!! TTCATCTTTGTCTTTTTTCT+AGG + chr1_1:6888882-6888901 Msa0004390:intron 25.0%
! AGGAATGAGATAAAATAGAA+AGG - chr1_1:6888962-6888981 None:intergenic 25.0%
!!! GTTATTTTGCTTTGAAGTTT+AGG - chr1_1:6888982-6889001 None:intergenic 25.0%
! GGAAAAAAATTGTTTATAGC+AGG + chr1_1:6889128-6889147 Msa0004390:intron 25.0%
! CTTCTCAAAATTTCTACATT+TGG - chr1_1:6889157-6889176 None:intergenic 25.0%
!!! CAAATGTAGAAATTTTGAGA+AGG + chr1_1:6889155-6889174 Msa0004390:intron 25.0%
! TGCATCAAACATGATATTTA+AGG + chr1_1:6889244-6889263 Msa0004390:intron 25.0%
! CATTGCATAAATGATGTATT+TGG - chr1_1:6889369-6889388 None:intergenic 25.0%
! TTCTTATAAATAGAACCGAA+TGG + chr1_1:6889407-6889426 Msa0004390:intron 25.0%
! TTATAAAACATCATAGTCGT+TGG - chr1_1:6889792-6889811 None:intergenic 25.0%
! ACTTGTAGTTCACAAAAAAA+AGG - chr1_1:6890006-6890025 None:intergenic 25.0%
! GACTAAAATGAATCAAAAGA+GGG + chr1_1:6890106-6890125 Msa0004390:intron 25.0%
! TGTGGCAAAAAAATATGTAA+CGG + chr1_1:6890202-6890221 Msa0004390:intron 25.0%
! TGTGGCAAAAAAATATCTAA+CGG - chr1_1:6890358-6890377 None:intergenic 25.0%
!!! TATCATTTTTTGATTCGACT+TGG - chr1_1:6890454-6890473 None:intergenic 25.0%
! GTCGAATCAAAAAATGATAA+AGG + chr1_1:6890455-6890474 Msa0004390:intron 25.0%
!! CTTTTAACCAATATTCATCT+TGG - chr1_1:6890482-6890501 None:intergenic 25.0%
!!! GGTAGGATATTTGTTTTTAA+GGG - chr1_1:6890653-6890672 None:intergenic 25.0%
!!! AGGTAGGATATTTGTTTTTA+AGG - chr1_1:6890654-6890673 None:intergenic 25.0%
! ATATATATTGCAAACACTTG+AGG - chr1_1:6890674-6890693 None:intergenic 25.0%
! AGAAACAATATAGTTGAGAT+AGG + chr1_1:6890843-6890862 Msa0004390:intron 25.0%
! ATGATTGACCATATTCATAT+GGG - chr1_1:6890872-6890891 None:intergenic 25.0%
! TTAAGAACCTACTAAATCTA+AGG - chr1_1:6890943-6890962 None:intergenic 25.0%
! AGCTATCAATAAAATCAGTA+TGG + chr1_1:6891550-6891569 Msa0004390:intron 25.0%
!! ATGAGATATTCTAACTTGTA+AGG + chr1_1:6891584-6891603 Msa0004390:intron 25.0%
!! TTTTTATATACCGCTATTTG+TGG - chr1_1:6891846-6891865 None:intergenic 25.0%
! ACATGTTCAAAGAATACATT+GGG + chr1_1:6892043-6892062 Msa0004390:CDS 25.0%
!!! AATAGTCTTTTTGTTTTGGT+GGG + chr1_1:6892114-6892133 Msa0004390:CDS 25.0%
! AGTTACCTTTACAAAATTAG+TGG - chr1_1:6892232-6892251 None:intergenic 25.0%
! GGTACAAGATATTTAAAAGA+AGG + chr1_1:6892333-6892352 Msa0004390:intron 25.0%
!!! TTTGATCGACATTTTTTCAT+CGG - chr1_1:6892418-6892437 None:intergenic 25.0%
!! TTTTTCCCTCTTGAATAAAA+TGG + chr1_1:6892516-6892535 Msa0004390:intron 25.0%
! GGATAGGAAATATATAAACT+TGG + chr1_1:6892537-6892556 Msa0004390:intron 25.0%
! ATATAAACTATCCTGCTATT+GGG - chr1_1:6892729-6892748 None:intergenic 25.0%
! AATATAAACTATCCTGCTAT+TGG - chr1_1:6892730-6892749 None:intergenic 25.0%
! ATTGTCAACTACCAAAAATA+TGG + chr1_1:6892777-6892796 Msa0004390:CDS 25.0%
! TTTAAGTATTTCATTGGTGA+GGG + chr1_1:6893457-6893476 Msa0004390:three_prime_UTR 25.0%
! AAATGTCCTATGAAAAATCA+AGG + chr1_1:6893494-6893513 Msa0004390:three_prime_UTR 25.0%
! AATGTCCTATGAAAAATCAA+GGG + chr1_1:6893495-6893514 Msa0004390:three_prime_UTR 25.0%
ATCAGAAATGAAGTAGTCAT+TGG - chr1_1:6888492-6888511 None:intergenic 30.0%
AAAATAACGGTTCAGCTATA+TGG + chr1_1:6888994-6889013 Msa0004390:intron 30.0%
ATGATATGGCGAAAGAAAAA+CGG - chr1_1:6889073-6889092 None:intergenic 30.0%
ACTCGAAACGAAATATGATA+TGG - chr1_1:6889087-6889106 None:intergenic 30.0%
GAGAAGGAAGACAAAATTAT+TGG + chr1_1:6889171-6889190 Msa0004390:intron 30.0%
ATTATTGGAGAGGATAAGAT+AGG + chr1_1:6889186-6889205 Msa0004390:intron 30.0%
TTAATATATCATACTCCCTC+CGG + chr1_1:6889273-6889292 Msa0004390:intron 30.0%
! TTTTTATAAATAGGACCGGA+GGG - chr1_1:6889291-6889310 None:intergenic 30.0%
!!! TTTTTTATAAATAGGACCGG+AGG - chr1_1:6889292-6889311 None:intergenic 30.0%
GGACTAAAATGAATCAAAAG+AGG + chr1_1:6890105-6890124 Msa0004390:intron 30.0%
CATTTACTCCATTTATGGTT+TGG - chr1_1:6890391-6890410 None:intergenic 30.0%
CAAACCATAAATGGAGTAAA+TGG + chr1_1:6890389-6890408 Msa0004390:intron 30.0%
TAAAGGACCAAGATGAATAT+TGG + chr1_1:6890472-6890491 Msa0004390:intron 30.0%
! TGTTTCTGACAGATTATCTA+AGG - chr1_1:6890586-6890605 None:intergenic 30.0%
TCTAGCTACAAGACAATATA+AGG - chr1_1:6890822-6890841 None:intergenic 30.0%
CATGATTGACCATATTCATA+TGG - chr1_1:6890873-6890892 None:intergenic 30.0%
TTGTCAATGATTAATCTCTG+CGG - chr1_1:6890901-6890920 None:intergenic 30.0%
! CTAAGGTGTACAAAGTATTA+TGG - chr1_1:6890926-6890945 None:intergenic 30.0%
TTGTACACCTTAGATTTAGT+AGG + chr1_1:6890933-6890952 Msa0004390:intron 30.0%
ATACTTAAGAGCTAGATCTA+GGG - chr1_1:6891005-6891024 None:intergenic 30.0%
TGTCACATTTATATCTAGGT+AGG + chr1_1:6891135-6891154 Msa0004390:intron 30.0%
GTCACATTTATATCTAGGTA+GGG + chr1_1:6891136-6891155 Msa0004390:intron 30.0%
!! TGATTTTATTGATAGCTGCA+AGG - chr1_1:6891547-6891566 None:intergenic 30.0%
GACATGTTCAAAGAATACAT+TGG + chr1_1:6892042-6892061 Msa0004390:CDS 30.0%
CACCAAAACAAAAAGACTAT+TGG - chr1_1:6892115-6892134 None:intergenic 30.0%
!!! CAATAGTCTTTTTGTTTTGG+TGG + chr1_1:6892113-6892132 Msa0004390:CDS 30.0%
ATGAACAACATAATAGGTGT+TGG - chr1_1:6892157-6892176 None:intergenic 30.0%
CTAACTACTATAGTGTCTAA+AGG + chr1_1:6892258-6892277 Msa0004390:intron 30.0%
ATCTTGTACCATTTCCAAAT+GGG - chr1_1:6892323-6892342 None:intergenic 30.0%
TATCTTGTACCATTTCCAAA+TGG - chr1_1:6892324-6892343 None:intergenic 30.0%
! TTAAAAGAAGGGTTTTCTCT+AGG + chr1_1:6892345-6892364 Msa0004390:intron 30.0%
! CCTATCCATTTTATTCAAGA+GGG - chr1_1:6892524-6892543 None:intergenic 30.0%
! TCCTATCCATTTTATTCAAG+AGG - chr1_1:6892525-6892544 None:intergenic 30.0%
TTGACAATGATATCAAGTAG+AGG - chr1_1:6892765-6892784 None:intergenic 30.0%
AACTTAGTCATAGAATTGTG+AGG + chr1_1:6892818-6892837 Msa0004390:intron 30.0%
ATCTGCTCAAATATCTTTCA+AGG - chr1_1:6893327-6893346 None:intergenic 30.0%
GTTTAAGTATTTCATTGGTG+AGG + chr1_1:6893456-6893475 Msa0004390:three_prime_UTR 30.0%
!!! TGTACAATGGTTTTATGTTG+AGG + chr1_1:6893622-6893641 Msa0004390:three_prime_UTR 30.0%
!! AGGAAGAAAGAAGTGTTTGT+TGG + chr1_1:6888431-6888450 Msa0004390:five_prime_UTR 35.0%
!! AAGAAAGAAGTGTTTGTTGG+AGG + chr1_1:6888434-6888453 Msa0004390:five_prime_UTR 35.0%
! GGAGATTCAATAGTTGATTC+AGG + chr1_1:6888603-6888622 Msa0004390:CDS 35.0%
CAATAACGACCTCAAAACTT+TGG + chr1_1:6888629-6888648 Msa0004390:CDS 35.0%
! TGCATTTGACCAAAGTTTTG+AGG - chr1_1:6888641-6888660 None:intergenic 35.0%
AAATGCAATTTCCCTCCTTA+TGG + chr1_1:6888654-6888673 Msa0004390:CDS 35.0%
GAAAATCTTTGCCATAAGGA+GGG - chr1_1:6888668-6888687 None:intergenic 35.0%
TGAAAATCTTTGCCATAAGG+AGG - chr1_1:6888669-6888688 None:intergenic 35.0%
CCTTGAAAATCTTTGCCATA+AGG - chr1_1:6888672-6888691 None:intergenic 35.0%
! CCTTATGGCAAAGATTTTCA+AGG + chr1_1:6888669-6888688 Msa0004390:CDS 35.0%
!! TATGGCAAAGATTTTCAAGG+TGG + chr1_1:6888672-6888691 Msa0004390:CDS 35.0%
AAAATCCCCTCAGATATACT+TGG + chr1_1:6888723-6888742 Msa0004390:CDS 35.0%
! AGAGTACCAAGTATATCTGA+GGG - chr1_1:6888732-6888751 None:intergenic 35.0%
GGAAGACAAAATTATTGGAG+AGG + chr1_1:6889176-6889195 Msa0004390:intron 35.0%
GTTTGATGCAGCAAAGAAAT+AGG - chr1_1:6889234-6889253 None:intergenic 35.0%
! TTCGTTTGATGGTCATGATA+GGG - chr1_1:6889445-6889464 None:intergenic 35.0%
TACATTAAGGGTTCGTTTGA+TGG - chr1_1:6889456-6889475 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG - chr1_1:6890405-6890424 None:intergenic 35.0%
AAGCTCCATTTACTCCATTT+AGG + chr1_1:6890163-6890182 Msa0004390:intron 35.0%
AGCTCCATTTACTCCATTTA+GGG + chr1_1:6890164-6890183 Msa0004390:intron 35.0%
CAAACCCTAAATGGAGTAAA+TGG - chr1_1:6890171-6890190 None:intergenic 35.0%
! CATTTACTCCATTTAGGGTT+TGG + chr1_1:6890169-6890188 Msa0004390:intron 35.0%
GTTGTGATATGAGAGAAGAA+GGG - chr1_1:6890302-6890321 None:intergenic 35.0%
TGTTGTGATATGAGAGAAGA+AGG - chr1_1:6890303-6890322 None:intergenic 35.0%
TCTTGCATCCAAACCATAAA+TGG + chr1_1:6890380-6890399 Msa0004390:intron 35.0%
AGCTCCATTTACTCCATTTA+TGG - chr1_1:6890164-6890183 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG + chr1_1:6890405-6890424 Msa0004390:intron 35.0%
! TTACTGGCGTTTGAAATACA+AGG + chr1_1:6890618-6890637 Msa0004390:intron 35.0%
! TACTGGCGTTTGAAATACAA+GGG + chr1_1:6890619-6890638 Msa0004390:intron 35.0%
ATATTGCAAACACTTGAGGT+AGG - chr1_1:6890670-6890689 None:intergenic 35.0%
ATAGGAGACCCATATGAATA+TGG + chr1_1:6890861-6890880 Msa0004390:intron 35.0%
CATACTTAAGAGCTAGATCT+AGG - chr1_1:6891006-6891025 None:intergenic 35.0%
ATTGCTCTAGCTGCAAATAT+AGG - chr1_1:6891332-6891351 None:intergenic 35.0%
TTTACTTGCAGCTGAACAAT+TGG + chr1_1:6891713-6891732 Msa0004390:intron 35.0%
TTACTTGCAGCTGAACAATT+GGG + chr1_1:6891714-6891733 Msa0004390:intron 35.0%
AGATTTGGATCCAAATATGC+AGG - chr1_1:6891756-6891775 None:intergenic 35.0%
! AGATCACTGGATTTGAGATT+TGG - chr1_1:6891771-6891790 None:intergenic 35.0%
AAATCCAGTGATCTTCTTAC+AGG + chr1_1:6891777-6891796 Msa0004390:CDS 35.0%
TGTTAAAATTGACCCTAGTG+TGG + chr1_1:6891928-6891947 Msa0004390:intron 35.0%
GTTAAAATTGACCCTAGTGT+GGG + chr1_1:6891929-6891948 Msa0004390:intron 35.0%
ACAAGCAAGTCACAAAACAA+TGG - chr1_1:6891982-6892001 None:intergenic 35.0%
ATGTCTAGTTGAGCAGATAA+TGG - chr1_1:6892027-6892046 None:intergenic 35.0%
GAATACATTGGGAAGTTGAA+AGG + chr1_1:6892054-6892073 Msa0004390:CDS 35.0%
GGAAAGAACAAACTTCATAC+TGG + chr1_1:6892089-6892108 Msa0004390:CDS 35.0%
!! GGCCAATAGTCTTTTTGTTT+TGG + chr1_1:6892110-6892129 Msa0004390:CDS 35.0%
TCTGGCATGAACAACATAAT+AGG - chr1_1:6892163-6892182 None:intergenic 35.0%
AGGAATGTCATATTGCAATC+TGG - chr1_1:6892181-6892200 None:intergenic 35.0%
TACAAAATTAGTGGCTGAGT+TGG - chr1_1:6892223-6892242 None:intergenic 35.0%
! CTCAGCCACTAATTTTGTAA+AGG + chr1_1:6892224-6892243 Msa0004390:CDS 35.0%
AGTGTCTAAAGGAGATAAGA+TGG + chr1_1:6892269-6892288 Msa0004390:intron 35.0%
GTGTCTAAAGGAGATAAGAT+GGG + chr1_1:6892270-6892289 Msa0004390:intron 35.0%
!! AGAAATGGGTTTTTCCCATT+TGG + chr1_1:6892306-6892325 Msa0004390:intron 35.0%
CAACACTTGAAAAAGCTGAT+CGG + chr1_1:6892382-6892401 Msa0004390:intron 35.0%
AACACTTGAAAAAGCTGATC+GGG + chr1_1:6892383-6892402 Msa0004390:intron 35.0%
CCCTCTTGAATAAAATGGAT+AGG + chr1_1:6892521-6892540 Msa0004390:intron 35.0%
CAGAACAAGTAGCATCTAAA+GGG - chr1_1:6893231-6893250 None:intergenic 35.0%
TCAGAACAAGTAGCATCTAA+AGG - chr1_1:6893232-6893251 None:intergenic 35.0%
! ATGCTTCAGAATACGTCTTT+TGG + chr1_1:6893251-6893270 Msa0004390:CDS 35.0%
! TGCTTCAGAATACGTCTTTT+GGG + chr1_1:6893252-6893271 Msa0004390:CDS 35.0%
TTTCTATATGCTCGTTCTGT+AGG - chr1_1:6893289-6893308 None:intergenic 35.0%
TGCATTGTGCTACAAAACGA+AGG + chr1_1:6888530-6888549 Msa0004390:CDS 40.0%
GCATTGTGCTACAAAACGAA+GGG + chr1_1:6888531-6888550 Msa0004390:CDS 40.0%
ACTGCTGGAACTGTAACATT+TGG - chr1_1:6888573-6888592 None:intergenic 40.0%
CATTGCAAAATCGACCAGTT+GGG - chr1_1:6888701-6888720 None:intergenic 40.0%
GAGTACCAAGTATATCTGAG+GGG - chr1_1:6888731-6888750 None:intergenic 40.0%
!! GAGAGTACCAAGTATATCTG+AGG - chr1_1:6888733-6888752 None:intergenic 40.0%
! CGAGTGTGAATTGATAGTTG+TGG + chr1_1:6889102-6889121 Msa0004390:intron 40.0%
! GTGAATTGATAGTTGTGGCA+TGG + chr1_1:6889107-6889126 Msa0004390:intron 40.0%
! GTTCGTTTGATGGTCATGAT+AGG - chr1_1:6889446-6889465 None:intergenic 40.0%
CCTTTCACATGAGAATCGTA+GGG - chr1_1:6889684-6889703 None:intergenic 40.0%
CCTACGATTCTCATGTGAAA+GGG + chr1_1:6889682-6889701 Msa0004390:intron 40.0%
AAGAGGGTAAATGACGAGTT+CGG + chr1_1:6890122-6890141 Msa0004390:intron 40.0%
TCTTGCATCCAAACCCTAAA+TGG - chr1_1:6890180-6890199 None:intergenic 40.0%
ACTTGGTCATTTACGAGTTC+GGG - chr1_1:6890437-6890456 None:intergenic 40.0%
! GACTTGGTCATTTACGAGTT+CGG - chr1_1:6890438-6890457 None:intergenic 40.0%
ATCTAGGTAGGGTATAGAAG+AGG + chr1_1:6891147-6891166 Msa0004390:intron 40.0%
TCTAGGTAGGGTATAGAAGA+GGG + chr1_1:6891148-6891167 Msa0004390:intron 40.0%
GAGAAGAAGAAGGAATGTTG+TGG + chr1_1:6891192-6891211 Msa0004390:intron 40.0%
GAACTCCAACTTATAACACG+AGG + chr1_1:6891214-6891233 Msa0004390:intron 40.0%
GACAACAAACATCCAAATCG+TGG - chr1_1:6891241-6891260 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr1_1:6891406-6891425 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + chr1_1:6891414-6891433 Msa0004390:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr1_1:6891417-6891436 Msa0004390:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr1_1:6891440-6891459 Msa0004390:intron 40.0%
AGCTGAACAATTGGGTATCA+AGG + chr1_1:6891722-6891741 Msa0004390:intron 40.0%
GGAGTATGTACCTGCATATT+TGG + chr1_1:6891743-6891762 Msa0004390:CDS 40.0%
TCCTTTGACACCACAAATAG+CGG + chr1_1:6891833-6891852 Msa0004390:CDS 40.0%
ATCAATTTCCACCCACACTA+GGG - chr1_1:6891943-6891962 None:intergenic 40.0%
TATCAATTTCCACCCACACT+AGG - chr1_1:6891944-6891963 None:intergenic 40.0%
GGGAAGTTGAAAGGAATTGT+TGG + chr1_1:6892063-6892082 Msa0004390:CDS 40.0%
GTTGAAAGGAATTGTTGGTG+AGG + chr1_1:6892068-6892087 Msa0004390:CDS 40.0%
!!! AGTCTTTTTGTTTTGGTGGG+AGG + chr1_1:6892117-6892136 Msa0004390:CDS 40.0%
GACATAAGATCAGTGTAAGC+AGG - chr1_1:6892201-6892220 None:intergenic 40.0%
! GGGTTTTTCCCATTTGGAAA+TGG + chr1_1:6892312-6892331 Msa0004390:intron 40.0%
AATTGCAGGCTTCAAAGTTG+TGG + chr1_1:6893156-6893175 Msa0004390:intron 40.0%
TGGTGAGGGTGATTGTTTAA+TGG + chr1_1:6893471-6893490 Msa0004390:three_prime_UTR 40.0%
! GACAGCCCTTGATTTTTCAT+AGG - chr1_1:6893503-6893522 None:intergenic 40.0%
GCTGGAACTGTAACATTTGG+TGG - chr1_1:6888570-6888589 None:intergenic 45.0%
GTTCCAGCAGTGATAGCATT+TGG + chr1_1:6888582-6888601 Msa0004390:CDS 45.0%
TCTCCAAATGCTATCACTGC+TGG - chr1_1:6888588-6888607 None:intergenic 45.0%
CCATTGCAAAATCGACCAGT+TGG - chr1_1:6888702-6888721 None:intergenic 45.0%
!! CCAACTGGTCGATTTTGCAA+TGG + chr1_1:6888699-6888718 Msa0004390:CDS 45.0%
GGGAGACATGATACTCCATT+CGG - chr1_1:6889425-6889444 None:intergenic 45.0%
CCCTACGATTCTCATGTGAA+AGG + chr1_1:6889681-6889700 Msa0004390:intron 45.0%
CCCTTTCACATGAGAATCGT+AGG - chr1_1:6889685-6889704 None:intergenic 45.0%
AGAGGGTAAATGACGAGTTC+GGG + chr1_1:6890123-6890142 Msa0004390:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG + chr1_1:6890138-6890157 Msa0004390:intron 45.0%
! TGGTTTGGATGCAAGACATG+TGG - chr1_1:6890376-6890395 None:intergenic 45.0%
AGTTCGGGTATGCTCCATTT+AGG - chr1_1:6890138-6890157 None:intergenic 45.0%
CTAGGTAGGGTATAGAAGAG+GGG + chr1_1:6891149-6891168 Msa0004390:intron 45.0%
AAAGAGAGGGGAGAAGAAGA+AGG + chr1_1:6891182-6891201 Msa0004390:intron 45.0%
GTGGACCTCGTGTTATAAGT+TGG - chr1_1:6891222-6891241 None:intergenic 45.0%
ATAACACGAGGTCCACGATT+TGG + chr1_1:6891226-6891245 Msa0004390:intron 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr1_1:6891434-6891453 Msa0004390:intron 45.0%
TACGCCTGTAAGAAGATCAC+TGG - chr1_1:6891784-6891803 None:intergenic 45.0%
AGTGATCTTCTTACAGGCGT+AGG + chr1_1:6891783-6891802 Msa0004390:CDS 45.0%
! ACCGCTATTTGTGGTGTCAA+AGG - chr1_1:6891837-6891856 None:intergenic 45.0%
AAAATTGACCCTAGTGTGGG+TGG + chr1_1:6891932-6891951 Msa0004390:intron 45.0%
TGTGATGGCACACATCCAAT+TGG - chr1_1:6892594-6892613 None:intergenic 45.0%
!!! AAAATAATTAAAAGTTTTTT+TGG - chr1_1:6889593-6889612 None:intergenic 5.0%
!! AAAATATAATTTCATAAAAA+TGG - chr1_1:6889634-6889653 None:intergenic 5.0%
!! TTAAATTAAAAAACAATAAA+AGG - chr1_1:6890327-6890346 None:intergenic 5.0%
GTTGGAGGAGCTAGCTAGTA+TGG + chr1_1:6888449-6888468 Msa0004390:exon 50.0%
TTTCAAGGTGGTGTCCCAAC+TGG + chr1_1:6888684-6888703 Msa0004390:CDS 50.0%
GGGTTTGGATGCAAGACATG+TGG + chr1_1:6890184-6890203 Msa0004390:intron 50.0%
! GGGTGGTGGTATGAAAGAGA+GGG + chr1_1:6891169-6891188 Msa0004390:intron 50.0%
! GGTGGTGGTATGAAAGAGAG+GGG + chr1_1:6891170-6891189 Msa0004390:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG + chr1_1:6891422-6891441 Msa0004390:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG - chr1_1:6891427-6891446 None:intergenic 50.0%
ATCGTATCCTGAAGCTCCAG+AGG - chr1_1:6891814-6891833 None:intergenic 50.0%
GTACTGAGTGCACCACCAAT+TGG + chr1_1:6892576-6892595 Msa0004390:CDS 50.0%
GATGGCACACATCCAATTGG+TGG - chr1_1:6892591-6892610 None:intergenic 50.0%
CCTGCAAGAGTTCTCTGTGA+TGG - chr1_1:6892609-6892628 None:intergenic 50.0%
CCATCACAGAGAACTCTTGC+AGG + chr1_1:6892606-6892625 Msa0004390:CDS 50.0%
TCACAGAGAACTCTTGCAGG+AGG + chr1_1:6892609-6892628 Msa0004390:CDS 50.0%
CACAGAGAACTCTTGCAGGA+GGG + chr1_1:6892610-6892629 Msa0004390:CDS 50.0%
GTCAGAACTCACCCAATAGC+AGG + chr1_1:6892715-6892734 Msa0004390:CDS 50.0%
GGCTTCAAAGTTGTGGACAG+AGG + chr1_1:6893163-6893182 Msa0004390:intron 50.0%
GTTGTGGACAGAGGTTGTTG+TGG + chr1_1:6893172-6893191 Msa0004390:CDS 50.0%
ACAGAGGTTGTTGTGGCACA+GGG + chr1_1:6893179-6893198 Msa0004390:CDS 50.0%
TTGTGGCACAGGGAAACTAG+AGG + chr1_1:6893189-6893208 Msa0004390:CDS 50.0%
GGTAGGGTATAGAAGAGGGG+TGG + chr1_1:6891152-6891171 Msa0004390:intron 55.0%
AGGGTATAGAAGAGGGGTGG+TGG + chr1_1:6891155-6891174 Msa0004390:intron 55.0%
! GGGGTGGTGGTATGAAAGAG+AGG + chr1_1:6891168-6891187 Msa0004390:intron 55.0%
GACAGAGGTTGTTGTGGCAC+AGG + chr1_1:6893178-6893197 Msa0004390:CDS 55.0%
ACAGGCGTAGGCTTTGCCTC+TGG + chr1_1:6891795-6891814 Msa0004390:CDS 60.0%
!! GGCTTTGCCTCTGGAGCTTC+AGG + chr1_1:6891804-6891823 Msa0004390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6888396 6893678 6888396 ID=Msa0004390;Name=Msa0004390
chr1_1 mRNA 6888396 6893678 6888396 ID=Msa0004390-mRNA-1;Parent=Msa0004390;Name=Msa0004390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=72|1|1|1|1|1|5|324|361
chr1_1 exon 6888396 6888744 6888396 ID=Msa0004390-mRNA-1:exon:2380;Parent=Msa0004390-mRNA-1
chr1_1 exon 6891724 6891854 6891724 ID=Msa0004390-mRNA-1:exon:2381;Parent=Msa0004390-mRNA-1
chr1_1 exon 6892015 6892245 6892015 ID=Msa0004390-mRNA-1:exon:2382;Parent=Msa0004390-mRNA-1
chr1_1 exon 6892543 6892798 6892543 ID=Msa0004390-mRNA-1:exon:2383;Parent=Msa0004390-mRNA-1
chr1_1 exon 6893164 6893678 6893164 ID=Msa0004390-mRNA-1:exon:2384;Parent=Msa0004390-mRNA-1
chr1_1 five_prime_UTR 6888396 6888467 6888396 ID=Msa0004390-mRNA-1:five_prime_utr;Parent=Msa0004390-mRNA-1
chr1_1 CDS 6888468 6888744 6888468 ID=Msa0004390-mRNA-1:cds;Parent=Msa0004390-mRNA-1
chr1_1 CDS 6891724 6891854 6891724 ID=Msa0004390-mRNA-1:cds;Parent=Msa0004390-mRNA-1
chr1_1 CDS 6892015 6892245 6892015 ID=Msa0004390-mRNA-1:cds;Parent=Msa0004390-mRNA-1
chr1_1 CDS 6892543 6892798 6892543 ID=Msa0004390-mRNA-1:cds;Parent=Msa0004390-mRNA-1
chr1_1 CDS 6893164 6893354 6893164 ID=Msa0004390-mRNA-1:cds;Parent=Msa0004390-mRNA-1
chr1_1 three_prime_UTR 6893355 6893678 6893355 ID=Msa0004390-mRNA-1:three_prime_utr;Parent=Msa0004390-mRNA-1
Gene Sequence

>Msa0004390

ATGGTGCAGCTCACAACTTCTCCAATGACTACTTCATTTCTGATCCGTTTCATTGTATTATTTGCATTGTGCTACAAAACGAAGGGTTTGATAAAGCTTCCACCAAATGTTACAGTTCCAGCAGTGATAGCATTTGGAGATTCAATAGTTGATTCAGGAAACAATAACGACCTCAAAACTTTGGTCAAATGCAATTTCCCTCCTTATGGCAAAGATTTTCAAGGTGGTGTCCCAACTGGTCGATTTTGCAATGGAAAAATCCCCTCAGATATACTTGCTGAACAATTGGGTATCAAGGAGTATGTACCTGCATATTTGGATCCAAATCTCAAATCCAGTGATCTTCTTACAGGCGTAGGCTTTGCCTCTGGAGCTTCAGGATACGATCCTTTGACACCACAAATAGCGTCAGTAATACCATTATCTGCTCAACTAGACATGTTCAAAGAATACATTGGGAAGTTGAAAGGAATTGTTGGTGAGGAAAGAACAAACTTCATACTGGCCAATAGTCTTTTTGTTTTGGTGGGAGGTAGTGACGACATTGCCAACACCTATTATGTTGTTCATGCCAGATTGCAATATGACATTCCTGCTTACACTGATCTTATGTCCAACTCAGCCACTAATTTTGTAAAGGAAATATATAAACTTGGAGCTCGTAGAATTGCTGTACTGAGTGCACCACCAATTGGATGTGTGCCATCACAGAGAACTCTTGCAGGAGGGATAGTAAGAGAGTGTGCAGAAAAGTATAATGATGCAGCAAAGTTATTCAACTCAAAACTCTCAAAGCAGCTTGATTCTCTTAGTCAGAACTCACCCAATAGCAGGATAGTTTATATTGATGTTTACGCTCCTCTACTTGATATCATTGTCAACTACCAAAAATATGGCTTCAAAGTTGTGGACAGAGGTTGTTGTGGCACAGGGAAACTAGAGGTTGCAGTGTTATGCAACCCTTTAGATGCTACTTGTTCTGATGCTTCAGAATACGTCTTTTGGGATAGTTATCATCCTACAGAACGAGCATATAGAAAGCTCGTAGATTCAGTCCTTGAAAGATATTTGAGCAGATTGATATGA
Protein sequence

>Msa0004390

MVQLTTSPMTTSFLIRFIVLFALCYKTKGLIKLPPNVTVPAVIAFGDSIVDSGNNNDLKTLVKCNFPPYGKDFQGGVPTGRFCNGKIPSDILAEQLGIKEYVPAYLDPNLKSSDLLTGVGFASGASGYDPLTPQIASVIPLSAQLDMFKEYIGKLKGIVGEERTNFILANSLFVLVGGSDDIANTYYVVHARLQYDIPAYTDLMSNSATNFVKEIYKLGARRIAVLSAPPIGCVPSQRTLAGGIVRECAEKYNDAAKLFNSKLSKQLDSLSQNSPNSRIVYIDVYAPLLDIIVNYQKYGFKVVDRGCCGTGKLEVAVLCNPLDATCSDASEYVFWDSYHPTERAYRKLVDSVLERYLSRLI*