Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461060 | AES99752.1 | 79.699 | 133 | 14 | 2 | 1 | 120 | 1 | 133 | 2.11e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461060 | G7KH64 | 79.699 | 133 | 14 | 2 | 1 | 120 | 1 | 133 | 1.01e-30 | 115 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004390 | Msa1461060 | 0.800933 | 1.141958e-48 | -8.615850e-47 |
| Msa0006980 | Msa1461060 | 0.811992 | 5.304769e-51 | -8.615850e-47 |
| Msa0019600 | Msa1461060 | 0.872592 | 2.826181e-67 | -8.615850e-47 |
| Msa0043210 | Msa1461060 | 0.838401 | 2.940112e-57 | -8.615850e-47 |
| Msa0050040 | Msa1461060 | 0.839745 | 1.318320e-57 | -8.615850e-47 |
| Msa0066320 | Msa1461060 | 0.817472 | 3.240560e-52 | -8.615850e-47 |
| Msa0098440 | Msa1461060 | 0.801060 | 1.075750e-48 | -8.615850e-47 |
| Msa0102990 | Msa1461060 | 0.839429 | 1.592838e-57 | -8.615850e-47 |
| Msa0109880 | Msa1461060 | 0.814251 | 1.694560e-51 | -8.615850e-47 |
| Msa0111750 | Msa1461060 | 0.871349 | 7.315952e-67 | -8.615850e-47 |
| Msa1374550 | Msa1461060 | 0.807625 | 4.613031e-50 | -8.615850e-47 |
| Msa1378870 | Msa1461060 | 0.803625 | 3.187773e-49 | -8.615850e-47 |
| Msa1379970 | Msa1461060 | 0.842196 | 2.997329e-58 | -8.615850e-47 |
| Msa1394890 | Msa1461060 | 0.818602 | 1.799120e-52 | -8.615850e-47 |
| Msa1406780 | Msa1461060 | 0.880762 | 4.203339e-70 | -8.615850e-47 |
| Msa1414930 | Msa1461060 | 0.804794 | 1.820185e-49 | -8.615850e-47 |
| Msa1419490 | Msa1461060 | 0.845149 | 4.862412e-59 | -8.615850e-47 |
| Msa1420060 | Msa1461060 | 0.847936 | 8.435455e-60 | -8.615850e-47 |
| Msa1421550 | Msa1461060 | 0.880635 | 4.667892e-70 | -8.615850e-47 |
| Msa1423460 | Msa1461060 | 0.834006 | 3.846237e-56 | -8.615850e-47 |
| Msa1423700 | Msa1461060 | 0.829850 | 4.085899e-55 | -8.615850e-47 |
| Msa1431850 | Msa1461060 | 0.870196 | 1.752175e-66 | -8.615850e-47 |
| Msa1437710 | Msa1461060 | 0.845068 | 5.114260e-59 | -8.615850e-47 |
| Msa1449940 | Msa1461060 | 0.868954 | 4.445161e-66 | -8.615850e-47 |
| Msa1455320 | Msa1461060 | 0.829906 | 3.960249e-55 | -8.615850e-47 |
| Msa0625890 | Msa1461060 | 0.806760 | 7.035033e-50 | -8.615850e-47 |
| Msa0641250 | Msa1461060 | 0.841714 | 4.019032e-58 | -8.615850e-47 |
| Msa0641360 | Msa1461060 | 0.805626 | 1.219221e-49 | -8.615850e-47 |
| Msa0663680 | Msa1461060 | 0.809668 | 1.688554e-50 | -8.615850e-47 |
| Msa0669840 | Msa1461060 | 0.859936 | 2.929466e-63 | -8.615850e-47 |
| Msa0680150 | Msa1461060 | 0.821307 | 4.327504e-53 | -8.615850e-47 |
| Msa0688500 | Msa1461060 | 0.819235 | 1.291653e-52 | -8.615850e-47 |
| Msa0707220 | Msa1461060 | 0.806914 | 6.525228e-50 | -8.615850e-47 |
| Msa0739580 | Msa1461060 | 0.880576 | 4.900203e-70 | -8.615850e-47 |
| Msa0752840 | Msa1461060 | 0.836071 | 1.160139e-56 | -8.615850e-47 |
| Msa0770290 | Msa1461060 | 0.811212 | 7.839737e-51 | -8.615850e-47 |
| Msa0782360 | Msa1461060 | 0.861961 | 7.098068e-64 | -8.615850e-47 |
| Msa0828830 | Msa1461060 | 0.818086 | 2.355441e-52 | -8.615850e-47 |
| Msa0831940 | Msa1461060 | 0.801224 | 9.960777e-49 | -8.615850e-47 |
| Msa0124130 | Msa1461060 | 0.828507 | 8.649666e-55 | -8.615850e-47 |
| Msa0137150 | Msa1461060 | 0.832208 | 1.078020e-55 | -8.615850e-47 |
| Msa0141120 | Msa1461060 | 0.864175 | 1.469065e-64 | -8.615850e-47 |
| Msa0147600 | Msa1461060 | 0.807970 | 3.896463e-50 | -8.615850e-47 |
| Msa0149140 | Msa1461060 | 0.837318 | 5.579364e-57 | -8.615850e-47 |
| Msa0156250 | Msa1461060 | 0.821635 | 3.635923e-53 | -8.615850e-47 |
| Msa0185490 | Msa1461060 | 0.831637 | 1.490822e-55 | -8.615850e-47 |
| Msa0197100 | Msa1461060 | 0.809592 | 1.753218e-50 | -8.615850e-47 |
| Msa0212080 | Msa1461060 | 0.825371 | 4.862158e-54 | -8.615850e-47 |
| Msa0212150 | Msa1461060 | 0.850988 | 1.189092e-60 | -8.615850e-47 |
| Msa0215640 | Msa1461060 | 0.825496 | 4.541368e-54 | -8.615850e-47 |
| Msa0219190 | Msa1461060 | 0.823931 | 1.061966e-53 | -8.615850e-47 |
| Msa1228190 | Msa1461060 | 0.821704 | 3.504477e-53 | -8.615850e-47 |
| Msa1233560 | Msa1461060 | 0.803739 | 3.019467e-49 | -8.615850e-47 |
| Msa1285900 | Msa1461060 | 0.838864 | 2.232332e-57 | -8.615850e-47 |
| Msa1294290 | Msa1461060 | 0.829643 | 4.589813e-55 | -8.615850e-47 |
| Msa1305510 | Msa1461060 | 0.873378 | 1.539878e-67 | -8.615850e-47 |
| Msa1307190 | Msa1461060 | 0.814004 | 1.920660e-51 | -8.615850e-47 |
| Msa0375680 | Msa1461060 | 0.843648 | 1.231015e-58 | -8.615850e-47 |
| Msa0392420 | Msa1461060 | 0.820841 | 5.541101e-53 | -8.615850e-47 |
| Msa0392460 | Msa1461060 | 0.817186 | 3.757174e-52 | -8.615850e-47 |
| Msa0392490 | Msa1461060 | 0.825957 | 3.530305e-54 | -8.615850e-47 |
| Msa0406000 | Msa1461060 | 0.893586 | 5.477253e-75 | -8.615850e-47 |
| Msa0408630 | Msa1461060 | 0.805085 | 1.582947e-49 | -8.615850e-47 |
| Msa0408640 | Msa1461060 | 0.812187 | 4.810681e-51 | -8.615850e-47 |
| Msa0418200 | Msa1461060 | 0.803052 | 4.190441e-49 | -8.615850e-47 |
| Msa0424330 | Msa1461060 | 0.857040 | 2.139922e-62 | -8.615850e-47 |
| Msa0424340 | Msa1461060 | 0.839534 | 1.495945e-57 | -8.615850e-47 |
| Msa0424350 | Msa1461060 | 0.849518 | 3.071050e-60 | -8.615850e-47 |
| Msa0436500 | Msa1461060 | 0.822212 | 2.672814e-53 | -8.615850e-47 |
| Msa0451400 | Msa1461060 | 0.892976 | 9.655119e-75 | -8.615850e-47 |
| Msa0453520 | Msa1461060 | 0.814015 | 1.910682e-51 | -8.615850e-47 |
| Msa0464540 | Msa1461060 | 0.811079 | 8.375961e-51 | -8.615850e-47 |
| Msa0471240 | Msa1461060 | 0.807572 | 4.734354e-50 | -8.615850e-47 |
| Msa0996270 | Msa1461060 | 0.840256 | 9.703422e-58 | -8.615850e-47 |
| Msa0999300 | Msa1461060 | 0.844209 | 8.711256e-59 | -8.615850e-47 |
| Msa1001890 | Msa1461060 | 0.836891 | 7.171064e-57 | -8.615850e-47 |
| Msa1016600 | Msa1461060 | 0.800859 | 1.182612e-48 | -8.615850e-47 |
| Msa1032450 | Msa1461060 | 0.804025 | 2.632509e-49 | -8.615850e-47 |
| Msa1037890 | Msa1461060 | 0.834922 | 2.264362e-56 | -8.615850e-47 |
| Msa1037900 | Msa1461060 | 0.871091 | 8.896380e-67 | -8.615850e-47 |
| Msa1037910 | Msa1461060 | 0.847311 | 1.252730e-59 | -8.615850e-47 |
| Msa1041530 | Msa1461060 | 0.835112 | 2.027778e-56 | -8.615850e-47 |
| Msa1042670 | Msa1461060 | 0.830946 | 2.205503e-55 | -8.615850e-47 |
| Msa1070420 | Msa1461060 | 0.808709 | 2.710753e-50 | -8.615850e-47 |
| Msa1081570 | Msa1461060 | 0.861222 | 1.194058e-63 | -8.615850e-47 |
| Msa1084520 | Msa1461060 | 0.805132 | 1.547313e-49 | -8.615850e-47 |
| Msa0239030 | Msa1461060 | 0.822116 | 2.813199e-53 | -8.615850e-47 |
| Msa0252630 | Msa1461060 | 0.819624 | 1.053132e-52 | -8.615850e-47 |
| Msa0252770 | Msa1461060 | 0.848183 | 7.207328e-60 | -8.615850e-47 |
| Msa0276740 | Msa1461060 | 0.807777 | 4.282808e-50 | -8.615850e-47 |
| Msa0289920 | Msa1461060 | 0.827375 | 1.620023e-54 | -8.615850e-47 |
| Msa0298240 | Msa1461060 | 0.826398 | 2.773157e-54 | -8.615850e-47 |
| Msa0306120 | Msa1461060 | 0.884182 | 2.386375e-71 | -8.615850e-47 |
| Msa0316680 | Msa1461060 | 0.818877 | 1.558205e-52 | -8.615850e-47 |
| Msa0329620 | Msa1461060 | 0.857045 | 2.131761e-62 | -8.615850e-47 |
| Msa0340480 | Msa1461060 | 0.833868 | 4.164628e-56 | -8.615850e-47 |
| Msa0343660 | Msa1461060 | 0.827750 | 1.316779e-54 | -8.615850e-47 |
| Msa0344570 | Msa1461060 | 0.821402 | 4.115752e-53 | -8.615850e-47 |
| Msa0359250 | Msa1461060 | 0.901182 | 3.468713e-78 | -8.615850e-47 |
| Msa0361260 | Msa1461060 | 0.805617 | 1.224038e-49 | -8.615850e-47 |
| Msa1123880 | Msa1461060 | 0.819055 | 1.420005e-52 | -8.615850e-47 |
| Msa1127140 | Msa1461060 | 0.865429 | 5.945856e-65 | -8.615850e-47 |
| Msa1129950 | Msa1461060 | 0.800642 | 1.309546e-48 | -8.615850e-47 |
| Msa1129960 | Msa1461060 | 0.890585 | 8.621979e-74 | -8.615850e-47 |
| Msa1129970 | Msa1461060 | 0.859132 | 5.108934e-63 | -8.615850e-47 |
| Msa1130010 | Msa1461060 | 0.841883 | 3.626289e-58 | -8.615850e-47 |
| Msa1145020 | Msa1461060 | 0.819059 | 1.417083e-52 | -8.615850e-47 |
| Msa1166400 | Msa1461060 | 0.861306 | 1.125344e-63 | -8.615850e-47 |
| Msa1169990 | Msa1461060 | 0.839490 | 1.535954e-57 | -8.615850e-47 |
| Msa1176160 | Msa1461060 | 0.828036 | 1.123796e-54 | -8.615850e-47 |
| Msa1201110 | Msa1461060 | 0.811043 | 8.529357e-51 | -8.615850e-47 |
| Msa1201160 | Msa1461060 | 0.848740 | 5.055445e-60 | -8.615850e-47 |
| Msa0487570 | Msa1461060 | 0.824403 | 8.225505e-54 | -8.615850e-47 |
| Msa0487630 | Msa1461060 | 0.829223 | 5.804516e-55 | -8.615850e-47 |
| Msa0492190 | Msa1461060 | 0.875285 | 3.476171e-68 | -8.615850e-47 |
| Msa0515950 | Msa1461060 | 0.852404 | 4.720683e-61 | -8.615850e-47 |
| Msa0534930 | Msa1461060 | 0.829181 | 5.944171e-55 | -8.615850e-47 |
| Msa0535040 | Msa1461060 | 0.809031 | 2.312992e-50 | -8.615850e-47 |
| Msa0537920 | Msa1461060 | 0.855964 | 4.430915e-62 | -8.615850e-47 |
| Msa0538220 | Msa1461060 | 0.826766 | 2.265544e-54 | -8.615850e-47 |
| Msa0543850 | Msa1461060 | 0.801130 | 1.041146e-48 | -8.615850e-47 |
| Msa0575740 | Msa1461060 | 0.827116 | 1.868627e-54 | -8.615850e-47 |
| Msa0591790 | Msa1461060 | 0.837437 | 5.199591e-57 | -8.615850e-47 |
| Msa0594090 | Msa1461060 | 0.854953 | 8.731130e-62 | -8.615850e-47 |
| Msa0849280 | Msa1461060 | 0.812336 | 4.462540e-51 | -8.615850e-47 |
| Msa0851020 | Msa1461060 | 0.816808 | 4.569255e-52 | -8.615850e-47 |
| Msa0860280 | Msa1461060 | 0.879433 | 1.251133e-69 | -8.615850e-47 |
| Msa0867350 | Msa1461060 | 0.866756 | 2.259271e-65 | -8.615850e-47 |
| Msa0885060 | Msa1461060 | 0.802475 | 5.513463e-49 | -8.615850e-47 |
| Msa0896350 | Msa1461060 | 0.821502 | 3.902379e-53 | -8.615850e-47 |
| Msa0896970 | Msa1461060 | 0.800548 | 1.368513e-48 | -8.615850e-47 |
| Msa0898730 | Msa1461060 | 0.874080 | 8.931454e-68 | -8.615850e-47 |
| Msa0922750 | Msa1461060 | 0.823330 | 1.467900e-53 | -8.615850e-47 |
| Msa0929870 | Msa1461060 | 0.827375 | 1.619811e-54 | -8.615850e-47 |
| Msa0944760 | Msa1461060 | 0.843135 | 1.688161e-58 | -8.615850e-47 |
| Msa0944880 | Msa1461060 | 0.827689 | 1.361743e-54 | -8.615850e-47 |
| Msa0946210 | Msa1461060 | 0.816005 | 6.911229e-52 | -8.615850e-47 |
| Msa0953540 | Msa1461060 | 0.806707 | 7.216179e-50 | -8.615850e-47 |
| Msa0961560 | Msa1461060 | 0.825480 | 4.582108e-54 | -8.615850e-47 |
| Msa0979510 | Msa1461060 | 0.827153 | 1.830976e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461060 | MtrunA17_Chr5g0438411 | 79.699 | 133 | 14 | 2 | 1 | 120 | 1 | 133 | 1.94e-34 | 115 |
| Msa1461060 | MtrunA17_Chr5g0438511 | 54.237 | 118 | 42 | 2 | 1 | 118 | 1 | 106 | 5.29e-21 | 82.8 |
| Msa1461060 | MtrunA17_Chr5g0438501 | 37.278 | 169 | 48 | 3 | 1 | 120 | 1 | 160 | 7.02e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCTTATCCTAGGTTTAT+TGG | 0.152765 | tig0041257:+8986 | Msa1461060:CDS |
| ACCAATTCAAATGAAATATT+TGG | 0.184163 | tig0041257:-8938 | Msa1461060:intergenic |
| GAATTAAATGATGGCAAATA+TGG | 0.218116 | tig0041257:+9680 | Msa1461060:CDS |
| ACCAAATATTTCATTTGAAT+TGG | 0.294376 | tig0041257:+8937 | Msa1461060:five_prime_UTR |
| TCTTATCTCCTCTGATGTTT+CGG | 0.309853 | tig0041257:+9019 | Msa1461060:CDS |
| CCTGGTCGTGGTGGTAATTA+TGG | 0.320779 | tig0041257:+9722 | Msa1461060:CDS |
| ACATCCTCTAATACCCAAAA+AGG | 0.335650 | tig0041257:+9059 | Msa1461060:CDS |
| TAATTACCACCACGGTTTCC+AGG | 0.361900 | tig0041257:-9779 | Msa1461060:intergenic |
| TGTTGCGGTGATAGGTATTA+TGG | 0.365471 | tig0041257:+9815 | Msa1461060:CDS |
| AAATTACATTGCTAATAGTA+TGG | 0.376514 | tig0041257:+10128 | Msa1461060:three_prime_UTR |
| TAACCACCACCACGGTTTCC+AGG | 0.406140 | tig0041257:-9755 | Msa1461060:intergenic |
| GCTATGGCTGTTGCGGTGAT+AGG | 0.407613 | tig0041257:+9807 | Msa1461060:CDS |
| GTACTCCTTTGTATTTGCTT+CGG | 0.416317 | tig0041257:+10058 | Msa1461060:three_prime_UTR |
| CTCCTCTGATGTTTCGGCTA+GGG | 0.449281 | tig0041257:+9025 | Msa1461060:CDS |
| AATTATGGTGGTGGTTATCC+TGG | 0.457834 | tig0041257:+9737 | Msa1461060:CDS |
| GGCAAATATGGAAGCTATGG+TGG | 0.472000 | tig0041257:+9692 | Msa1461060:CDS |
| CAAACAAATGAATTAAATGA+TGG | 0.499941 | tig0041257:+9671 | Msa1461060:CDS |
| GTTGCGGTGATAGGTATTAT+GGG | 0.502063 | tig0041257:+9816 | Msa1461060:CDS |
| TAGCCAATAAACCTAGGATA+AGG | 0.503132 | tig0041257:-8989 | Msa1461060:intergenic |
| GCAAATATGGAAGCTATGGT+GGG | 0.509000 | tig0041257:+9693 | Msa1461060:CDS |
| AATTACCACCACGGTTTCCA+GGG | 0.523853 | tig0041257:-9778 | Msa1461060:intergenic |
| TCTCCTCTGATGTTTCGGCT+AGG | 0.529634 | tig0041257:+9024 | Msa1461060:CDS |
| CGTGGTGGTAATTATGGTGG+TGG | 0.530246 | tig0041257:+9728 | Msa1461060:CDS |
| TAGTATGGATATTTCAAAAG+TGG | 0.539997 | tig0041257:+10143 | Msa1461060:three_prime_UTR |
| GATGGCAAATATGGAAGCTA+TGG | 0.545533 | tig0041257:+9689 | Msa1461060:CDS |
| TTTGAATTGGTATTGAACAA+TGG | 0.556223 | tig0041257:+8950 | Msa1461060:exon |
| TGTTGTGTGTTTATCAAGAG+TGG | 0.556919 | tig0041257:+9970 | Msa1461060:three_prime_UTR |
| AACCGTGGTGGTGGTTACCC+TGG | 0.559819 | tig0041257:+9761 | Msa1461060:CDS |
| GGTATTATGGGAGTTGCAGA+AGG | 0.562319 | tig0041257:+9828 | Msa1461060:CDS |
| AGTGTTGTTCTCAGTTTGCA+CGG | 0.568848 | tig0041257:-9879 | Msa1461060:intergenic |
| GGTGGTAATTATTGTCGCTA+TGG | 0.572979 | tig0041257:+9791 | Msa1461060:CDS |
| TATCCTGGAAACCGTGGTGG+TGG | 0.578604 | tig0041257:+9752 | Msa1461060:CDS |
| CCATAATTACCACCACGACC+AGG | 0.597203 | tig0041257:-9722 | Msa1461060:intergenic |
| TATTGTCGCTATGGCTGTTG+CGG | 0.598460 | tig0041257:+9800 | Msa1461060:CDS |
| GAATGATAGCCAATAAACCT+AGG | 0.610349 | tig0041257:-8995 | Msa1461060:intergenic |
| CAAATATGGAAGCTATGGTG+GGG | 0.613749 | tig0041257:+9694 | Msa1461060:CDS |
| AGAAGGTGTTGCTCATATGC+TGG | 0.617122 | tig0041257:+9845 | Msa1461060:CDS |
| ATATCAAACTAGCGTTAAGA+CGG | 0.617812 | tig0041257:+10263 | Msa1461060:three_prime_UTR |
| GTCCCTAGCCGAAACATCAG+AGG | 0.630693 | tig0041257:-9027 | Msa1461060:intergenic |
| CATAATGATATCATCATGCA+TGG | 0.640975 | tig0041257:+9912 | Msa1461060:three_prime_UTR |
| AAATATGGAAGCTATGGTGG+GGG | 0.641886 | tig0041257:+9695 | Msa1461060:CDS |
| GGTCGTGGTGGTAATTATGG+TGG | 0.644801 | tig0041257:+9725 | Msa1461060:CDS |
| TATATCCGAAGCAAATACAA+AGG | 0.647790 | tig0041257:-10063 | Msa1461060:intergenic |
| TTCCAGGGTAACCACCACCA+CGG | 0.661772 | tig0041257:-9763 | Msa1461060:intergenic |
| GGTTATCCTGGAAACCGTGG+TGG | 0.662961 | tig0041257:+9749 | Msa1461060:CDS |
| GGTGGTTACCCTGGAAACCG+TGG | 0.668990 | tig0041257:+9770 | Msa1461060:CDS |
| GGTGGTTATCCTGGAAACCG+TGG | 0.690182 | tig0041257:+9746 | Msa1461060:CDS |
| AGCGACAATAATTACCACCA+CGG | 0.696105 | tig0041257:-9787 | Msa1461060:intergenic |
| GGTTACCCTGGAAACCGTGG+TGG | 0.745370 | tig0041257:+9773 | Msa1461060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATTTTGGATCAATT+TGG | - | tig0041257:9253-9272 | Msa1461060:intergenic | 15.0% |
| !!! | TATTCTTTTTAAAAATCACT+TGG | + | tig0041257:9402-9421 | Msa1461060:intron | 15.0% |
| !!! | ATTCTTTTTAAAAATCACTT+GGG | + | tig0041257:9403-9422 | Msa1461060:intron | 15.0% |
| !!! | GATGAACTTTTAAAAAAAAA+CGG | + | tig0041257:10212-10231 | Msa1461060:three_prime_UTR | 15.0% |
| !!! | ATTTATATTTTGGATCAATT+TGG | - | tig0041257:9253-9272 | Msa1461060:intergenic | 15.0% |
| !!! | TATTCTTTTTAAAAATCACT+TGG | + | tig0041257:9402-9421 | Msa1461060:intron | 15.0% |
| !!! | ATTCTTTTTAAAAATCACTT+GGG | + | tig0041257:9403-9422 | Msa1461060:intron | 15.0% |
| !!! | GATGAACTTTTAAAAAAAAA+CGG | + | tig0041257:10212-10231 | Msa1461060:three_prime_UTR | 15.0% |
| !! | ACCAAATATTTCATTTGAAT+TGG | + | tig0041257:8937-8956 | Msa1461060:five_prime_UTR | 20.0% |
| !! | ACCAATTCAAATGAAATATT+TGG | - | tig0041257:8941-8960 | Msa1461060:intergenic | 20.0% |
| !!! | TAAACAAACTCACATTTTAA+TGG | - | tig0041257:9538-9557 | Msa1461060:intergenic | 20.0% |
| !! | CAAACAAATGAATTAAATGA+TGG | + | tig0041257:9671-9690 | Msa1461060:CDS | 20.0% |
| !! | AAAATCGAAGATATGAAAAA+CGG | - | tig0041257:10093-10112 | Msa1461060:intergenic | 20.0% |
| !!! | TGTAATTTTCTTTCCTTTAA+TGG | - | tig0041257:10116-10135 | Msa1461060:intergenic | 20.0% |
| !! | AAATTACATTGCTAATAGTA+TGG | + | tig0041257:10128-10147 | Msa1461060:three_prime_UTR | 20.0% |
| !! | ACCAAATATTTCATTTGAAT+TGG | + | tig0041257:8937-8956 | Msa1461060:five_prime_UTR | 20.0% |
| !! | ACCAATTCAAATGAAATATT+TGG | - | tig0041257:8941-8960 | Msa1461060:intergenic | 20.0% |
| !!! | TAAACAAACTCACATTTTAA+TGG | - | tig0041257:9538-9557 | Msa1461060:intergenic | 20.0% |
| !! | CAAACAAATGAATTAAATGA+TGG | + | tig0041257:9671-9690 | Msa1461060:CDS | 20.0% |
| !! | AAAATCGAAGATATGAAAAA+CGG | - | tig0041257:10093-10112 | Msa1461060:intergenic | 20.0% |
| !!! | TGTAATTTTCTTTCCTTTAA+TGG | - | tig0041257:10116-10135 | Msa1461060:intergenic | 20.0% |
| !! | AAATTACATTGCTAATAGTA+TGG | + | tig0041257:10128-10147 | Msa1461060:three_prime_UTR | 20.0% |
| !! | TTTGAATTGGTATTGAACAA+TGG | + | tig0041257:8950-8969 | Msa1461060:exon | 25.0% |
| ! | GAATTAAATGATGGCAAATA+TGG | + | tig0041257:9680-9699 | Msa1461060:CDS | 25.0% |
| !! | TTTCATTTTGTATTGCTTTG+TGG | + | tig0041257:10028-10047 | Msa1461060:three_prime_UTR | 25.0% |
| !! | TATCTTCGATTTTCCATTAA+AGG | + | tig0041257:10100-10119 | Msa1461060:three_prime_UTR | 25.0% |
| ! | TAGTATGGATATTTCAAAAG+TGG | + | tig0041257:10143-10162 | Msa1461060:three_prime_UTR | 25.0% |
| !! | TTTGAATTGGTATTGAACAA+TGG | + | tig0041257:8950-8969 | Msa1461060:exon | 25.0% |
| ! | GAATTAAATGATGGCAAATA+TGG | + | tig0041257:9680-9699 | Msa1461060:CDS | 25.0% |
| !! | TTTCATTTTGTATTGCTTTG+TGG | + | tig0041257:10028-10047 | Msa1461060:three_prime_UTR | 25.0% |
| !! | TATCTTCGATTTTCCATTAA+AGG | + | tig0041257:10100-10119 | Msa1461060:three_prime_UTR | 25.0% |
| ! | TAGTATGGATATTTCAAAAG+TGG | + | tig0041257:10143-10162 | Msa1461060:three_prime_UTR | 25.0% |
| AAAAATGCAATCCTTATCCT+AGG | + | tig0041257:8978-8997 | Msa1461060:CDS | 30.0% | |
| AATCCTTATCCTAGGTTTAT+TGG | + | tig0041257:8986-9005 | Msa1461060:CDS | 30.0% | |
| ! | ATGTACAATCTCACCTTTTT+GGG | - | tig0041257:9075-9094 | Msa1461060:intergenic | 30.0% |
| ! | AATGTACAATCTCACCTTTT+TGG | - | tig0041257:9076-9095 | Msa1461060:intergenic | 30.0% |
| !! | TCTGAAGGCATTATTATCAA+AGG | - | tig0041257:9140-9159 | Msa1461060:intergenic | 30.0% |
| ! | TTTGAAACGTATCATGTAAC+CGG | - | tig0041257:9167-9186 | Msa1461060:intergenic | 30.0% |
| CCAAGAAATATAGCTTCTAA+CGG | - | tig0041257:9203-9222 | Msa1461060:intergenic | 30.0% | |
| CGTTAGAAGCTATATTTCTT+GGG | + | tig0041257:9201-9220 | Msa1461060:intron | 30.0% | |
| GTTAGAAGCTATATTTCTTG+GGG | + | tig0041257:9202-9221 | Msa1461060:intron | 30.0% | |
| !! | ACAAACTCACATTTTAATGG+TGG | - | tig0041257:9535-9554 | Msa1461060:intergenic | 30.0% |
| CATAATGATATCATCATGCA+TGG | + | tig0041257:9912-9931 | Msa1461060:three_prime_UTR | 30.0% | |
| TATATCCGAAGCAAATACAA+AGG | - | tig0041257:10066-10085 | Msa1461060:intergenic | 30.0% | |
| ATATCAAACTAGCGTTAAGA+CGG | + | tig0041257:10263-10282 | Msa1461060:three_prime_UTR | 30.0% | |
| AAAAATGCAATCCTTATCCT+AGG | + | tig0041257:8978-8997 | Msa1461060:CDS | 30.0% | |
| AATCCTTATCCTAGGTTTAT+TGG | + | tig0041257:8986-9005 | Msa1461060:CDS | 30.0% | |
| ! | ATGTACAATCTCACCTTTTT+GGG | - | tig0041257:9075-9094 | Msa1461060:intergenic | 30.0% |
| ! | AATGTACAATCTCACCTTTT+TGG | - | tig0041257:9076-9095 | Msa1461060:intergenic | 30.0% |
| !! | TCTGAAGGCATTATTATCAA+AGG | - | tig0041257:9140-9159 | Msa1461060:intergenic | 30.0% |
| ! | TTTGAAACGTATCATGTAAC+CGG | - | tig0041257:9167-9186 | Msa1461060:intergenic | 30.0% |
| CCAAGAAATATAGCTTCTAA+CGG | - | tig0041257:9203-9222 | Msa1461060:intergenic | 30.0% | |
| CGTTAGAAGCTATATTTCTT+GGG | + | tig0041257:9201-9220 | Msa1461060:intron | 30.0% | |
| GTTAGAAGCTATATTTCTTG+GGG | + | tig0041257:9202-9221 | Msa1461060:intron | 30.0% | |
| !! | ACAAACTCACATTTTAATGG+TGG | - | tig0041257:9535-9554 | Msa1461060:intergenic | 30.0% |
| CATAATGATATCATCATGCA+TGG | + | tig0041257:9912-9931 | Msa1461060:three_prime_UTR | 30.0% | |
| TATATCCGAAGCAAATACAA+AGG | - | tig0041257:10066-10085 | Msa1461060:intergenic | 30.0% | |
| TAGCCAATAAACCTAGGATA+AGG | - | tig0041257:8992-9011 | Msa1461060:intergenic | 35.0% | |
| GAATGATAGCCAATAAACCT+AGG | - | tig0041257:8998-9017 | Msa1461060:intergenic | 35.0% | |
| TCTTATCTCCTCTGATGTTT+CGG | + | tig0041257:9019-9038 | Msa1461060:CDS | 35.0% | |
| ACATCCTCTAATACCCAAAA+AGG | + | tig0041257:9059-9078 | Msa1461060:CDS | 35.0% | |
| AATAATGCCTTCAGAAATGC+CGG | + | tig0041257:9145-9164 | Msa1461060:intron | 35.0% | |
| AGAAATATAGCTTCTAACGG+TGG | - | tig0041257:9200-9219 | Msa1461060:intergenic | 35.0% | |
| CCGTTAGAAGCTATATTTCT+TGG | + | tig0041257:9200-9219 | Msa1461060:intron | 35.0% | |
| CGAATACTATTAGATGTGCA+TGG | + | tig0041257:9378-9397 | Msa1461060:intron | 35.0% | |
| TGTTGTGTGTTTATCAAGAG+TGG | + | tig0041257:9970-9989 | Msa1461060:three_prime_UTR | 35.0% | |
| GTACTCCTTTGTATTTGCTT+CGG | + | tig0041257:10058-10077 | Msa1461060:three_prime_UTR | 35.0% | |
| TAGCCAATAAACCTAGGATA+AGG | - | tig0041257:8992-9011 | Msa1461060:intergenic | 35.0% | |
| GAATGATAGCCAATAAACCT+AGG | - | tig0041257:8998-9017 | Msa1461060:intergenic | 35.0% | |
| TCTTATCTCCTCTGATGTTT+CGG | + | tig0041257:9019-9038 | Msa1461060:CDS | 35.0% | |
| ACATCCTCTAATACCCAAAA+AGG | + | tig0041257:9059-9078 | Msa1461060:CDS | 35.0% | |
| AATAATGCCTTCAGAAATGC+CGG | + | tig0041257:9145-9164 | Msa1461060:intron | 35.0% | |
| AGAAATATAGCTTCTAACGG+TGG | - | tig0041257:9200-9219 | Msa1461060:intergenic | 35.0% | |
| CCGTTAGAAGCTATATTTCT+TGG | + | tig0041257:9200-9219 | Msa1461060:intron | 35.0% | |
| CGAATACTATTAGATGTGCA+TGG | + | tig0041257:9378-9397 | Msa1461060:intron | 35.0% | |
| TGTTGTGTGTTTATCAAGAG+TGG | + | tig0041257:9970-9989 | Msa1461060:three_prime_UTR | 35.0% | |
| GTACTCCTTTGTATTTGCTT+CGG | + | tig0041257:10058-10077 | Msa1461060:three_prime_UTR | 35.0% | |
| !!! | CTCACCTTTTTGGGTATTAG+AGG | - | tig0041257:9066-9085 | Msa1461060:intergenic | 40.0% |
| CATACGTAATGTGTTTGCAG+AGG | + | tig0041257:9640-9659 | Msa1461060:intron | 40.0% | |
| GATGGCAAATATGGAAGCTA+TGG | + | tig0041257:9689-9708 | Msa1461060:CDS | 40.0% | |
| GCAAATATGGAAGCTATGGT+GGG | + | tig0041257:9693-9712 | Msa1461060:CDS | 40.0% | |
| CAAATATGGAAGCTATGGTG+GGG | + | tig0041257:9694-9713 | Msa1461060:CDS | 40.0% | |
| AAATATGGAAGCTATGGTGG+GGG | + | tig0041257:9695-9714 | Msa1461060:CDS | 40.0% | |
| !! | AATTATGGTGGTGGTTATCC+TGG | + | tig0041257:9737-9756 | Msa1461060:CDS | 40.0% |
| AGCGACAATAATTACCACCA+CGG | - | tig0041257:9790-9809 | Msa1461060:intergenic | 40.0% | |
| GGTGGTAATTATTGTCGCTA+TGG | + | tig0041257:9791-9810 | Msa1461060:CDS | 40.0% | |
| TGTTGCGGTGATAGGTATTA+TGG | + | tig0041257:9815-9834 | Msa1461060:CDS | 40.0% | |
| GTTGCGGTGATAGGTATTAT+GGG | + | tig0041257:9816-9835 | Msa1461060:CDS | 40.0% | |
| ! | AGTGTTGTTCTCAGTTTGCA+CGG | - | tig0041257:9882-9901 | Msa1461060:intergenic | 40.0% |
| !!! | CTCACCTTTTTGGGTATTAG+AGG | - | tig0041257:9066-9085 | Msa1461060:intergenic | 40.0% |
| CATACGTAATGTGTTTGCAG+AGG | + | tig0041257:9640-9659 | Msa1461060:intron | 40.0% | |
| GATGGCAAATATGGAAGCTA+TGG | + | tig0041257:9689-9708 | Msa1461060:CDS | 40.0% | |
| GCAAATATGGAAGCTATGGT+GGG | + | tig0041257:9693-9712 | Msa1461060:CDS | 40.0% | |
| CAAATATGGAAGCTATGGTG+GGG | + | tig0041257:9694-9713 | Msa1461060:CDS | 40.0% | |
| AAATATGGAAGCTATGGTGG+GGG | + | tig0041257:9695-9714 | Msa1461060:CDS | 40.0% | |
| !! | AATTATGGTGGTGGTTATCC+TGG | + | tig0041257:9737-9756 | Msa1461060:CDS | 40.0% |
| AGCGACAATAATTACCACCA+CGG | - | tig0041257:9790-9809 | Msa1461060:intergenic | 40.0% | |
| GGTGGTAATTATTGTCGCTA+TGG | + | tig0041257:9791-9810 | Msa1461060:CDS | 40.0% | |
| TGTTGCGGTGATAGGTATTA+TGG | + | tig0041257:9815-9834 | Msa1461060:CDS | 40.0% | |
| GTTGCGGTGATAGGTATTAT+GGG | + | tig0041257:9816-9835 | Msa1461060:CDS | 40.0% | |
| ! | AGTGTTGTTCTCAGTTTGCA+CGG | - | tig0041257:9882-9901 | Msa1461060:intergenic | 40.0% |
| CATGTAACCGGCATTTCTGA+AGG | - | tig0041257:9155-9174 | Msa1461060:intergenic | 45.0% | |
| ACTGTGTTAGTGTTGCAGTG+TGG | - | tig0041257:9474-9493 | Msa1461060:intergenic | 45.0% | |
| GGCAAATATGGAAGCTATGG+TGG | + | tig0041257:9692-9711 | Msa1461060:CDS | 45.0% | |
| AATTACCACCACGGTTTCCA+GGG | - | tig0041257:9781-9800 | Msa1461060:intergenic | 45.0% | |
| TAATTACCACCACGGTTTCC+AGG | - | tig0041257:9782-9801 | Msa1461060:intergenic | 45.0% | |
| TATTGTCGCTATGGCTGTTG+CGG | + | tig0041257:9800-9819 | Msa1461060:CDS | 45.0% | |
| GGTATTATGGGAGTTGCAGA+AGG | + | tig0041257:9828-9847 | Msa1461060:CDS | 45.0% | |
| !! | AGAAGGTGTTGCTCATATGC+TGG | + | tig0041257:9845-9864 | Msa1461060:CDS | 45.0% |
| CATGTAACCGGCATTTCTGA+AGG | - | tig0041257:9155-9174 | Msa1461060:intergenic | 45.0% | |
| ACTGTGTTAGTGTTGCAGTG+TGG | - | tig0041257:9474-9493 | Msa1461060:intergenic | 45.0% | |
| GGCAAATATGGAAGCTATGG+TGG | + | tig0041257:9692-9711 | Msa1461060:CDS | 45.0% | |
| AATTACCACCACGGTTTCCA+GGG | - | tig0041257:9781-9800 | Msa1461060:intergenic | 45.0% | |
| TAATTACCACCACGGTTTCC+AGG | - | tig0041257:9782-9801 | Msa1461060:intergenic | 45.0% | |
| TATTGTCGCTATGGCTGTTG+CGG | + | tig0041257:9800-9819 | Msa1461060:CDS | 45.0% | |
| GGTATTATGGGAGTTGCAGA+AGG | + | tig0041257:9828-9847 | Msa1461060:CDS | 45.0% | |
| !! | AGAAGGTGTTGCTCATATGC+TGG | + | tig0041257:9845-9864 | Msa1461060:CDS | 45.0% |
| !!! | AATAAAATCAATTTATATTT+TGG | - | tig0041257:9263-9282 | Msa1461060:intergenic | 5.0% |
| !!! | AATTGAATTTTATAATTAAT+AGG | + | tig0041257:9616-9635 | Msa1461060:intron | 5.0% |
| !!! | ATTGAATTTTATAATTAATA+GGG | + | tig0041257:9617-9636 | Msa1461060:intron | 5.0% |
| !!! | AATAAAATCAATTTATATTT+TGG | - | tig0041257:9263-9282 | Msa1461060:intergenic | 5.0% |
| !!! | AATTGAATTTTATAATTAAT+AGG | + | tig0041257:9616-9635 | Msa1461060:intron | 5.0% |
| !!! | ATTGAATTTTATAATTAATA+GGG | + | tig0041257:9617-9636 | Msa1461060:intron | 5.0% |
| TCTCCTCTGATGTTTCGGCT+AGG | + | tig0041257:9024-9043 | Msa1461060:CDS | 50.0% | |
| CTCCTCTGATGTTTCGGCTA+GGG | + | tig0041257:9025-9044 | Msa1461060:CDS | 50.0% | |
| ! | TGCAGTGTGGATCGACTTTG+AGG | - | tig0041257:9461-9480 | Msa1461060:intergenic | 50.0% |
| CCATAATTACCACCACGACC+AGG | - | tig0041257:9725-9744 | Msa1461060:intergenic | 50.0% | |
| CCTGGTCGTGGTGGTAATTA+TGG | + | tig0041257:9722-9741 | Msa1461060:CDS | 50.0% | |
| GGTCGTGGTGGTAATTATGG+TGG | + | tig0041257:9725-9744 | Msa1461060:CDS | 50.0% | |
| CGTGGTGGTAATTATGGTGG+TGG | + | tig0041257:9728-9747 | Msa1461060:CDS | 50.0% | |
| TCTCCTCTGATGTTTCGGCT+AGG | + | tig0041257:9024-9043 | Msa1461060:CDS | 50.0% | |
| CTCCTCTGATGTTTCGGCTA+GGG | + | tig0041257:9025-9044 | Msa1461060:CDS | 50.0% | |
| ! | TGCAGTGTGGATCGACTTTG+AGG | - | tig0041257:9461-9480 | Msa1461060:intergenic | 50.0% |
| CCATAATTACCACCACGACC+AGG | - | tig0041257:9725-9744 | Msa1461060:intergenic | 50.0% | |
| CCTGGTCGTGGTGGTAATTA+TGG | + | tig0041257:9722-9741 | Msa1461060:CDS | 50.0% | |
| GGTCGTGGTGGTAATTATGG+TGG | + | tig0041257:9725-9744 | Msa1461060:CDS | 50.0% | |
| CGTGGTGGTAATTATGGTGG+TGG | + | tig0041257:9728-9747 | Msa1461060:CDS | 50.0% | |
| GTCCCTAGCCGAAACATCAG+AGG | - | tig0041257:9030-9049 | Msa1461060:intergenic | 55.0% | |
| GGTGGTTATCCTGGAAACCG+TGG | + | tig0041257:9746-9765 | Msa1461060:CDS | 55.0% | |
| GGTTATCCTGGAAACCGTGG+TGG | + | tig0041257:9749-9768 | Msa1461060:CDS | 55.0% | |
| TATCCTGGAAACCGTGGTGG+TGG | + | tig0041257:9752-9771 | Msa1461060:CDS | 55.0% | |
| TAACCACCACCACGGTTTCC+AGG | - | tig0041257:9758-9777 | Msa1461060:intergenic | 55.0% | |
| TTCCAGGGTAACCACCACCA+CGG | - | tig0041257:9766-9785 | Msa1461060:intergenic | 55.0% | |
| GCTATGGCTGTTGCGGTGAT+AGG | + | tig0041257:9807-9826 | Msa1461060:CDS | 55.0% | |
| GTCCCTAGCCGAAACATCAG+AGG | - | tig0041257:9030-9049 | Msa1461060:intergenic | 55.0% | |
| GGTGGTTATCCTGGAAACCG+TGG | + | tig0041257:9746-9765 | Msa1461060:CDS | 55.0% | |
| GGTTATCCTGGAAACCGTGG+TGG | + | tig0041257:9749-9768 | Msa1461060:CDS | 55.0% | |
| TATCCTGGAAACCGTGGTGG+TGG | + | tig0041257:9752-9771 | Msa1461060:CDS | 55.0% | |
| TAACCACCACCACGGTTTCC+AGG | - | tig0041257:9758-9777 | Msa1461060:intergenic | 55.0% | |
| TTCCAGGGTAACCACCACCA+CGG | - | tig0041257:9766-9785 | Msa1461060:intergenic | 55.0% | |
| GCTATGGCTGTTGCGGTGAT+AGG | + | tig0041257:9807-9826 | Msa1461060:CDS | 55.0% | |
| ! | AGCTATGGTGGGGGCTATCC+TGG | + | tig0041257:9704-9723 | Msa1461060:CDS | 60.0% |
| !! | AACCGTGGTGGTGGTTACCC+TGG | + | tig0041257:9761-9780 | Msa1461060:CDS | 60.0% |
| GGTGGTTACCCTGGAAACCG+TGG | + | tig0041257:9770-9789 | Msa1461060:CDS | 60.0% | |
| GGTTACCCTGGAAACCGTGG+TGG | + | tig0041257:9773-9792 | Msa1461060:CDS | 60.0% | |
| ! | AGCTATGGTGGGGGCTATCC+TGG | + | tig0041257:9704-9723 | Msa1461060:CDS | 60.0% |
| !! | AACCGTGGTGGTGGTTACCC+TGG | + | tig0041257:9761-9780 | Msa1461060:CDS | 60.0% |
| GGTGGTTACCCTGGAAACCG+TGG | + | tig0041257:9770-9789 | Msa1461060:CDS | 60.0% | |
| GGTTACCCTGGAAACCGTGG+TGG | + | tig0041257:9773-9792 | Msa1461060:CDS | 60.0% | |
| GGTGGGGGCTATCCTGGTCG+TGG | + | tig0041257:9710-9729 | Msa1461060:CDS | 70.0% | |
| GGGGGCTATCCTGGTCGTGG+TGG | + | tig0041257:9713-9732 | Msa1461060:CDS | 70.0% | |
| GGTGGGGGCTATCCTGGTCG+TGG | + | tig0041257:9710-9729 | Msa1461060:CDS | 70.0% | |
| GGGGGCTATCCTGGTCGTGG+TGG | + | tig0041257:9713-9732 | Msa1461060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041257 | gene | 8933 | 10283 | 8933 | ID=Msa1461060;Name=Msa1461060 |
| tig0041257 | mRNA | 8933 | 10283 | 8933 | ID=Msa1461060-mRNA-1;Parent=Msa1461060;Name=Msa1461060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|2|373|120 |
| tig0041257 | exon | 8933 | 9080 | 8933 | ID=Msa1461060-mRNA-1:exon:23008;Parent=Msa1461060-mRNA-1 |
| tig0041257 | exon | 9660 | 10283 | 9660 | ID=Msa1461060-mRNA-1:exon:23009;Parent=Msa1461060-mRNA-1 |
| tig0041257 | five_prime_UTR | 8933 | 8968 | 8933 | ID=Msa1461060-mRNA-1:five_prime_utr;Parent=Msa1461060-mRNA-1 |
| tig0041257 | CDS | 8969 | 9080 | 8969 | ID=Msa1461060-mRNA-1:cds;Parent=Msa1461060-mRNA-1 |
| tig0041257 | CDS | 9660 | 9910 | 9660 | ID=Msa1461060-mRNA-1:cds;Parent=Msa1461060-mRNA-1 |
| tig0041257 | three_prime_UTR | 9911 | 10283 | 9911 | ID=Msa1461060-mRNA-1:three_prime_utr;Parent=Msa1461060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
