Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012550 | sp|Q9LQV2|RDR1_ARATH | 46.857 | 175 | 90 | 1 | 16 | 190 | 3 | 174 | 1.27e-48 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012550 | Msa0152430 | 0.823429 | 1.391542e-53 | -8.615850e-47 |
| Msa0012550 | Msa0191250 | 0.801749 | 7.772529e-49 | -8.615850e-47 |
| Msa0012550 | Msa0217400 | 0.801975 | 6.986719e-49 | -8.615850e-47 |
| Msa0012550 | Msa0262510 | 0.810753 | 9.854720e-51 | -8.615850e-47 |
| Msa0012550 | Msa0296560 | 0.805576 | 1.248965e-49 | -8.615850e-47 |
| Msa0012550 | Msa0335040 | 0.805475 | 1.311551e-49 | -8.615850e-47 |
| Msa0012550 | Msa0338110 | 0.823695 | 1.205843e-53 | -8.615850e-47 |
| Msa0012550 | Msa0407780 | 0.810001 | 1.431616e-50 | -8.615850e-47 |
| Msa0012550 | Msa0407890 | 0.800710 | 1.268490e-48 | -8.615850e-47 |
| Msa0012550 | Msa0484780 | 0.823662 | 1.227547e-53 | -8.615850e-47 |
| Msa0012550 | Msa0657970 | 0.804519 | 2.078138e-49 | -8.615850e-47 |
| Msa0012550 | Msa0682550 | 0.803230 | 3.849343e-49 | -8.615850e-47 |
| Msa0012550 | Msa0693380 | 0.804013 | 2.647964e-49 | -8.615850e-47 |
| Msa0012550 | Msa0867890 | 0.802123 | 6.515023e-49 | -8.615850e-47 |
| Msa0012550 | Msa0870530 | 0.809522 | 1.814894e-50 | -8.615850e-47 |
| Msa0012550 | Msa0909120 | 0.801841 | 7.443447e-49 | -8.615850e-47 |
| Msa0012550 | Msa1080160 | 0.802004 | 6.892538e-49 | -8.615850e-47 |
| Msa0012550 | Msa1082500 | 0.820960 | 5.203833e-53 | -8.615850e-47 |
| Msa0012550 | Msa1271300 | 0.801629 | 8.229648e-49 | -8.615850e-47 |
| Msa0012550 | Msa1278840 | 0.816017 | 6.867699e-52 | -8.615850e-47 |
| Msa0012550 | Msa1308380 | 0.816095 | 6.598595e-52 | -8.615850e-47 |
| Msa0012550 | Msa1314170 | 0.801796 | 7.605211e-49 | -8.615850e-47 |
| Msa0012550 | Msa1314340 | 0.816901 | 4.355390e-52 | -8.615850e-47 |
| Msa0012550 | Msa1423880 | 0.804621 | 1.978710e-49 | -8.615850e-47 |
| Msa0012550 | Msa1463670 | 0.800675 | 1.289493e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012550 | MtrunA17_Chr1g0161471 | 91.061 | 179 | 16 | 0 | 12 | 190 | 1 | 179 | 3.18e-111 | 342 |
| Msa0012550 | MtrunA17_Chr1g0161491 | 71.892 | 185 | 49 | 2 | 6 | 190 | 9 | 190 | 7.27e-83 | 265 |
| Msa0012550 | MtrunA17_Chr1g0161521 | 74.302 | 179 | 46 | 0 | 12 | 190 | 1 | 179 | 7.94e-83 | 265 |
| Msa0012550 | MtrunA17_Chr1g0161511 | 73.184 | 179 | 48 | 0 | 12 | 190 | 1 | 179 | 4.32e-82 | 263 |
| Msa0012550 | MtrunA17_Chr1g0161451 | 33.333 | 174 | 113 | 1 | 16 | 189 | 3 | 173 | 2.19e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012550 | AT1G14790.1 | 46.857 | 175 | 90 | 1 | 16 | 190 | 3 | 174 | 1.29e-49 | 172 |
Find 34 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATGTTAGAGTTGATTT+TGG | 0.118507 | 1_1:-18792548 | Msa0012550:CDS |
| AGCTTTCATATGAGAATATT+TGG | 0.191630 | 1_1:-18792466 | Msa0012550:CDS |
| GATGATGTGAAACTGTATTT+TGG | 0.243659 | 1_1:-18792614 | Msa0012550:CDS |
| TACAAAATATCTATTGATTC+AGG | 0.285414 | 1_1:-18792411 | Msa0012550:CDS |
| CTATTTAAAAGTTCGGGAAA+TGG | 0.367680 | 1_1:-18792681 | Msa0012550:CDS |
| AGTAAAACAATTGAGTTGTC+TGG | 0.373719 | 1_1:-18792911 | Msa0012550:CDS |
| GGAGCTCCTATTTAAAAGTT+CGG | 0.391789 | 1_1:-18792688 | Msa0012550:CDS |
| TTGCAAATGCTGTTCGAATA+CGG | 0.393963 | 1_1:+18792789 | None:intergenic |
| GAGCTCCTATTTAAAAGTTC+GGG | 0.414378 | 1_1:-18792687 | Msa0012550:CDS |
| TGCAAATGCTGTTCGAATAC+GGG | 0.433393 | 1_1:+18792790 | None:intergenic |
| AGATTTGTAGAGCATTATAC+TGG | 0.433761 | 1_1:-18792854 | Msa0012550:CDS |
| GTTTGCCACCTTTGCAGTAC+GGG | 0.434961 | 1_1:-18792709 | Msa0012550:CDS |
| AAAAGAGTTGGCATTGAAGA+TGG | 0.454789 | 1_1:-18792939 | Msa0012550:CDS |
| GAGATATTGTTCGAAGGCCA+AGG | 0.492960 | 1_1:-18792655 | Msa0012550:CDS |
| GTTTGAATGTCTTATTGTCA+TGG | 0.500412 | 1_1:+18792492 | None:intergenic |
| TTGGGATTGGAATGAGAAAG+TGG | 0.506648 | 1_1:-18792529 | Msa0012550:CDS |
| TCTACAAATCTCTTTACATC+AGG | 0.508391 | 1_1:+18792866 | None:intergenic |
| AGATCATGCTACAGATATGA+TGG | 0.508791 | 1_1:-18792747 | Msa0012550:CDS |
| GATTGAGCTGCATCAGCCAC+GGG | 0.510977 | 1_1:-18792441 | Msa0012550:CDS |
| TTTAGGAAAATCAAAAGAGT+TGG | 0.512227 | 1_1:-18792951 | Msa0012550:intron |
| TGGCAAACTTCCACTAGGTA+AGG | 0.536113 | 1_1:+18792724 | None:intergenic |
| AGTTTGCCACCTTTGCAGTA+CGG | 0.538953 | 1_1:-18792710 | Msa0012550:CDS |
| TCAGGCACGGTAACATAATG+AGG | 0.549755 | 1_1:+18792884 | None:intergenic |
| AGATTGAGCTGCATCAGCCA+CGG | 0.566095 | 1_1:-18792442 | Msa0012550:CDS |
| GTAGAGCATTATACTGGTGA+AGG | 0.567027 | 1_1:-18792848 | Msa0012550:CDS |
| GAGCTCCCGTACTGCAAAGG+TGG | 0.595563 | 1_1:+18792704 | None:intergenic |
| TAGGAGCTCCCGTACTGCAA+AGG | 0.606754 | 1_1:+18792701 | None:intergenic |
| AGATATTGTTCGAAGGCCAA+GGG | 0.614700 | 1_1:-18792654 | Msa0012550:CDS |
| AAAGGTGGCAAACTTCCACT+AGG | 0.633685 | 1_1:+18792719 | None:intergenic |
| TGGAAAGAGATATTGTTCGA+AGG | 0.637279 | 1_1:-18792661 | Msa0012550:CDS |
| GATATGATGGCCTTACCTAG+TGG | 0.641635 | 1_1:-18792734 | Msa0012550:CDS |
| AAATCTCTTTACATCAGGCA+CGG | 0.648504 | 1_1:+18792871 | None:intergenic |
| CAGGCACGGTAACATAATGA+GGG | 0.657015 | 1_1:+18792885 | None:intergenic |
| ATTGAGCTGCATCAGCCACG+GGG | 0.745981 | 1_1:-18792440 | Msa0012550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAATTTGTTTTTTCA+AGG | - | chr1_1:18792861-18792880 | Msa0012550:CDS | 10.0% |
| !! | AAAAATTAATGTTAAAAAGA+TGG | + | chr1_1:18793425-18793444 | None:intergenic | 10.0% |
| !!! | TTAAAAAATTTGTTTTTTCA+AGG | - | chr1_1:18792861-18792880 | Msa0012550:CDS | 10.0% |
| !! | AAAAATTAATGTTAAAAAGA+TGG | + | chr1_1:18793425-18793444 | None:intergenic | 10.0% |
| !! | AATAATAATTGGATAAATGA+AGG | - | chr1_1:18792685-18792704 | Msa0012550:CDS | 15.0% |
| !!! | TTTTATTTATTTCGTTATTC+TGG | - | chr1_1:18793109-18793128 | Msa0012550:intron | 15.0% |
| !! | AATAATAATTGGATAAATGA+AGG | - | chr1_1:18792685-18792704 | Msa0012550:CDS | 15.0% |
| !!! | TTTTATTTATTTCGTTATTC+TGG | - | chr1_1:18793109-18793128 | Msa0012550:intron | 15.0% |
| !!! | CATGAATTTTAGTAATTAGT+TGG | + | chr1_1:18792783-18792802 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTTTCAAGGAATA+AGG | - | chr1_1:18792868-18792887 | Msa0012550:CDS | 20.0% |
| !! | AATAATTTCTGACATAAGTT+CGG | + | chr1_1:18793012-18793031 | None:intergenic | 20.0% |
| !! | AACTTACATATATATGCATA+TGG | + | chr1_1:18793274-18793293 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTATCCTATTT+AGG | - | chr1_1:18793450-18793469 | Msa0012550:intron | 20.0% |
| !!! | AGAAAAGATTATCTGTTTTA+TGG | - | chr1_1:18793841-18793860 | Msa0012550:intron | 20.0% |
| !!! | TACAAAATATCTATTGATTC+AGG | - | chr1_1:18794007-18794026 | Msa0012550:intron | 20.0% |
| !!! | CATGAATTTTAGTAATTAGT+TGG | + | chr1_1:18792783-18792802 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTTTCAAGGAATA+AGG | - | chr1_1:18792868-18792887 | Msa0012550:CDS | 20.0% |
| !! | AATAATTTCTGACATAAGTT+CGG | + | chr1_1:18793012-18793031 | None:intergenic | 20.0% |
| !! | AACTTACATATATATGCATA+TGG | + | chr1_1:18793274-18793293 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTATCCTATTT+AGG | - | chr1_1:18793450-18793469 | Msa0012550:intron | 20.0% |
| !!! | AGAAAAGATTATCTGTTTTA+TGG | - | chr1_1:18793841-18793860 | Msa0012550:intron | 20.0% |
| !!! | TACAAAATATCTATTGATTC+AGG | - | chr1_1:18794007-18794026 | Msa0012550:intron | 20.0% |
| ! | GACTTATAATCAAATACAGA+GGG | + | chr1_1:18792469-18792488 | None:intergenic | 25.0% |
| ! | TGACTTATAATCAAATACAG+AGG | + | chr1_1:18792470-18792489 | None:intergenic | 25.0% |
| ! | TCCAATTATTATTACTCCAA+CGG | + | chr1_1:18792678-18792697 | None:intergenic | 25.0% |
| !!! | TTCTATATCAAAGGTATTTC+AGG | - | chr1_1:18792817-18792836 | Msa0012550:CDS | 25.0% |
| ! | AAATCATTTCTCTTGTTGAT+AGG | - | chr1_1:18792915-18792934 | Msa0012550:CDS | 25.0% |
| ! | ATAATTTCTGACATAAGTTC+GGG | + | chr1_1:18793011-18793030 | None:intergenic | 25.0% |
| ! | TTATTAGATTCCTTATGTGT+TGG | - | chr1_1:18793027-18793046 | Msa0012550:intron | 25.0% |
| ! | TTTCTCTTGAACAAATTAAC+GGG | + | chr1_1:18793301-18793320 | None:intergenic | 25.0% |
| ! | CTTTCTCTTGAACAAATTAA+CGG | + | chr1_1:18793302-18793321 | None:intergenic | 25.0% |
| !!! | CTCTTTTGATTTTCCTAAAT+AGG | + | chr1_1:18793466-18793485 | None:intergenic | 25.0% |
| ! | TTTAGGAAAATCAAAAGAGT+TGG | - | chr1_1:18793467-18793486 | Msa0012550:intron | 25.0% |
| ! | GTTGCTATAAAAATAAGAGA+AGG | - | chr1_1:18793600-18793619 | Msa0012550:intron | 25.0% |
| ! | AGCTTTCATATGAGAATATT+TGG | - | chr1_1:18793952-18793971 | Msa0012550:intron | 25.0% |
| ! | GACTTATAATCAAATACAGA+GGG | + | chr1_1:18792469-18792488 | None:intergenic | 25.0% |
| ! | TGACTTATAATCAAATACAG+AGG | + | chr1_1:18792470-18792489 | None:intergenic | 25.0% |
| ! | TCCAATTATTATTACTCCAA+CGG | + | chr1_1:18792678-18792697 | None:intergenic | 25.0% |
| !!! | TTCTATATCAAAGGTATTTC+AGG | - | chr1_1:18792817-18792836 | Msa0012550:CDS | 25.0% |
| ! | AAATCATTTCTCTTGTTGAT+AGG | - | chr1_1:18792915-18792934 | Msa0012550:CDS | 25.0% |
| ! | ATAATTTCTGACATAAGTTC+GGG | + | chr1_1:18793011-18793030 | None:intergenic | 25.0% |
| ! | TTATTAGATTCCTTATGTGT+TGG | - | chr1_1:18793027-18793046 | Msa0012550:intron | 25.0% |
| ! | TTTCTCTTGAACAAATTAAC+GGG | + | chr1_1:18793301-18793320 | None:intergenic | 25.0% |
| ! | CTTTCTCTTGAACAAATTAA+CGG | + | chr1_1:18793302-18793321 | None:intergenic | 25.0% |
| !!! | CTCTTTTGATTTTCCTAAAT+AGG | + | chr1_1:18793466-18793485 | None:intergenic | 25.0% |
| ! | TTTAGGAAAATCAAAAGAGT+TGG | - | chr1_1:18793467-18793486 | Msa0012550:intron | 25.0% |
| ! | GTTGCTATAAAAATAAGAGA+AGG | - | chr1_1:18793600-18793619 | Msa0012550:intron | 25.0% |
| ! | AGCTTTCATATGAGAATATT+TGG | - | chr1_1:18793952-18793971 | Msa0012550:intron | 25.0% |
| ACCGTTGGAGTAATAATAAT+TGG | - | chr1_1:18792674-18792693 | Msa0012550:CDS | 30.0% | |
| ! | AGTTGTGTTCTTGTTTATTG+CGG | - | chr1_1:18792728-18792747 | Msa0012550:CDS | 30.0% |
| ! | GCTCACATTTTCTATATCAA+AGG | - | chr1_1:18792808-18792827 | Msa0012550:CDS | 30.0% |
| TAATTTCTGACATAAGTTCG+GGG | + | chr1_1:18793010-18793029 | None:intergenic | 30.0% | |
| TCACACATCAACACTATATA+TGG | + | chr1_1:18793079-18793098 | None:intergenic | 30.0% | |
| TATGTTCTGTGATATGAATG+TGG | - | chr1_1:18793216-18793235 | Msa0012550:intron | 30.0% | |
| ATATATGCATATGGTCCTTA+CGG | + | chr1_1:18793265-18793284 | None:intergenic | 30.0% | |
| AGAGAAAGAATTCAAATGCT+TGG | - | chr1_1:18793314-18793333 | Msa0012550:intron | 30.0% | |
| AAGAATTCAAATGCTTGGAT+TGG | - | chr1_1:18793319-18793338 | Msa0012550:intron | 30.0% | |
| ! | GCATAGTCAATGATTTTCTA+TGG | + | chr1_1:18793346-18793365 | None:intergenic | 30.0% |
| TACTTGATGTAGTAGTTTGA+CGG | - | chr1_1:18793397-18793416 | Msa0012550:intron | 30.0% | |
| ! | AGTAAAACAATTGAGTTGTC+TGG | - | chr1_1:18793507-18793526 | Msa0012550:intron | 30.0% |
| TCTACAAATCTCTTTACATC+AGG | + | chr1_1:18793555-18793574 | None:intergenic | 30.0% | |
| ! | AGATTTGTAGAGCATTATAC+TGG | - | chr1_1:18793564-18793583 | Msa0012550:intron | 30.0% |
| ! | CATTTCCCGAACTTTTAAAT+AGG | + | chr1_1:18793739-18793758 | None:intergenic | 30.0% |
| CTATTTAAAAGTTCGGGAAA+TGG | - | chr1_1:18793737-18793756 | Msa0012550:intron | 30.0% | |
| ! | GATGATGTGAAACTGTATTT+TGG | - | chr1_1:18793804-18793823 | Msa0012550:intron | 30.0% |
| ! | ATTATCTGTTTTATGGAGAG+AGG | - | chr1_1:18793848-18793867 | Msa0012550:intron | 30.0% |
| !! | AGGATGTTAGAGTTGATTTT+GGG | - | chr1_1:18793871-18793890 | Msa0012550:intron | 30.0% |
| ! | GTTTGAATGTCTTATTGTCA+TGG | + | chr1_1:18793929-18793948 | None:intergenic | 30.0% |
| ACCGTTGGAGTAATAATAAT+TGG | - | chr1_1:18792674-18792693 | Msa0012550:CDS | 30.0% | |
| ! | AGTTGTGTTCTTGTTTATTG+CGG | - | chr1_1:18792728-18792747 | Msa0012550:CDS | 30.0% |
| ! | GCTCACATTTTCTATATCAA+AGG | - | chr1_1:18792808-18792827 | Msa0012550:CDS | 30.0% |
| TAATTTCTGACATAAGTTCG+GGG | + | chr1_1:18793010-18793029 | None:intergenic | 30.0% | |
| TCACACATCAACACTATATA+TGG | + | chr1_1:18793079-18793098 | None:intergenic | 30.0% | |
| TATGTTCTGTGATATGAATG+TGG | - | chr1_1:18793216-18793235 | Msa0012550:intron | 30.0% | |
| ATATATGCATATGGTCCTTA+CGG | + | chr1_1:18793265-18793284 | None:intergenic | 30.0% | |
| AGAGAAAGAATTCAAATGCT+TGG | - | chr1_1:18793314-18793333 | Msa0012550:intron | 30.0% | |
| AAGAATTCAAATGCTTGGAT+TGG | - | chr1_1:18793319-18793338 | Msa0012550:intron | 30.0% | |
| ! | GCATAGTCAATGATTTTCTA+TGG | + | chr1_1:18793346-18793365 | None:intergenic | 30.0% |
| TACTTGATGTAGTAGTTTGA+CGG | - | chr1_1:18793397-18793416 | Msa0012550:intron | 30.0% | |
| ! | AGTAAAACAATTGAGTTGTC+TGG | - | chr1_1:18793507-18793526 | Msa0012550:intron | 30.0% |
| TCTACAAATCTCTTTACATC+AGG | + | chr1_1:18793555-18793574 | None:intergenic | 30.0% | |
| ! | AGATTTGTAGAGCATTATAC+TGG | - | chr1_1:18793564-18793583 | Msa0012550:intron | 30.0% |
| ! | CATTTCCCGAACTTTTAAAT+AGG | + | chr1_1:18793739-18793758 | None:intergenic | 30.0% |
| CTATTTAAAAGTTCGGGAAA+TGG | - | chr1_1:18793737-18793756 | Msa0012550:intron | 30.0% | |
| ! | GATGATGTGAAACTGTATTT+TGG | - | chr1_1:18793804-18793823 | Msa0012550:intron | 30.0% |
| ! | ATTATCTGTTTTATGGAGAG+AGG | - | chr1_1:18793848-18793867 | Msa0012550:intron | 30.0% |
| !! | AGGATGTTAGAGTTGATTTT+GGG | - | chr1_1:18793871-18793890 | Msa0012550:intron | 30.0% |
| ! | GTTTGAATGTCTTATTGTCA+TGG | + | chr1_1:18793929-18793948 | None:intergenic | 30.0% |
| TGAGAATCACTTACAAAGAC+AGG | - | chr1_1:18792548-18792567 | Msa0012550:CDS | 35.0% | |
| GAGAATCACTTACAAAGACA+GGG | - | chr1_1:18792549-18792568 | Msa0012550:CDS | 35.0% | |
| TACAAAGACAGGGATCAATT+TGG | - | chr1_1:18792559-18792578 | Msa0012550:CDS | 35.0% | |
| ! | AAAAGAGTTGGCATTGAAGA+TGG | - | chr1_1:18793479-18793498 | Msa0012550:intron | 35.0% |
| AAATCTCTTTACATCAGGCA+CGG | + | chr1_1:18793550-18793569 | None:intergenic | 35.0% | |
| TTGCAAATGCTGTTCGAATA+CGG | + | chr1_1:18793632-18793651 | None:intergenic | 35.0% | |
| AGATCATGCTACAGATATGA+TGG | - | chr1_1:18793671-18793690 | Msa0012550:intron | 35.0% | |
| GGAGCTCCTATTTAAAAGTT+CGG | - | chr1_1:18793730-18793749 | Msa0012550:intron | 35.0% | |
| GAGCTCCTATTTAAAAGTTC+GGG | - | chr1_1:18793731-18793750 | Msa0012550:intron | 35.0% | |
| TGGAAAGAGATATTGTTCGA+AGG | - | chr1_1:18793757-18793776 | Msa0012550:intron | 35.0% | |
| AAACTGTGCAAAAATTCCCT+TGG | + | chr1_1:18793783-18793802 | None:intergenic | 35.0% | |
| ! | AAGGGAATTTTTGCACAGTT+TGG | - | chr1_1:18793782-18793801 | Msa0012550:intron | 35.0% |
| !! | GAGGATGTTAGAGTTGATTT+TGG | - | chr1_1:18793870-18793889 | Msa0012550:intron | 35.0% |
| !!! | GTTAGAGTTGATTTTGGGAT+TGG | - | chr1_1:18793876-18793895 | Msa0012550:intron | 35.0% |
| !! | TATTTTGTAGTTTTACCCCG+TGG | + | chr1_1:18793996-18794015 | None:intergenic | 35.0% |
| TGAGAATCACTTACAAAGAC+AGG | - | chr1_1:18792548-18792567 | Msa0012550:CDS | 35.0% | |
| GAGAATCACTTACAAAGACA+GGG | - | chr1_1:18792549-18792568 | Msa0012550:CDS | 35.0% | |
| TACAAAGACAGGGATCAATT+TGG | - | chr1_1:18792559-18792578 | Msa0012550:CDS | 35.0% | |
| ! | AAAAGAGTTGGCATTGAAGA+TGG | - | chr1_1:18793479-18793498 | Msa0012550:intron | 35.0% |
| AAATCTCTTTACATCAGGCA+CGG | + | chr1_1:18793550-18793569 | None:intergenic | 35.0% | |
| TTGCAAATGCTGTTCGAATA+CGG | + | chr1_1:18793632-18793651 | None:intergenic | 35.0% | |
| AGATCATGCTACAGATATGA+TGG | - | chr1_1:18793671-18793690 | Msa0012550:intron | 35.0% | |
| GGAGCTCCTATTTAAAAGTT+CGG | - | chr1_1:18793730-18793749 | Msa0012550:intron | 35.0% | |
| GAGCTCCTATTTAAAAGTTC+GGG | - | chr1_1:18793731-18793750 | Msa0012550:intron | 35.0% | |
| TGGAAAGAGATATTGTTCGA+AGG | - | chr1_1:18793757-18793776 | Msa0012550:intron | 35.0% | |
| AAACTGTGCAAAAATTCCCT+TGG | + | chr1_1:18793783-18793802 | None:intergenic | 35.0% | |
| ! | AAGGGAATTTTTGCACAGTT+TGG | - | chr1_1:18793782-18793801 | Msa0012550:intron | 35.0% |
| !! | GAGGATGTTAGAGTTGATTT+TGG | - | chr1_1:18793870-18793889 | Msa0012550:intron | 35.0% |
| !!! | GTTAGAGTTGATTTTGGGAT+TGG | - | chr1_1:18793876-18793895 | Msa0012550:intron | 35.0% |
| !! | TATTTTGTAGTTTTACCCCG+TGG | + | chr1_1:18793996-18794015 | None:intergenic | 35.0% |
| AAAGACAGGGATCAATTTGG+TGG | - | chr1_1:18792562-18792581 | Msa0012550:CDS | 40.0% | |
| GCGACATAATAAGATACCGT+TGG | - | chr1_1:18792659-18792678 | Msa0012550:CDS | 40.0% | |
| TTGTTTATTGCGGAGAATCG+TGG | - | chr1_1:18792738-18792757 | Msa0012550:CDS | 40.0% | |
| ! | TAGATTCCTTATGTGTTGGC+AGG | - | chr1_1:18793031-18793050 | Msa0012550:intron | 40.0% |
| ! | AGATTCCTTATGTGTTGGCA+GGG | - | chr1_1:18793032-18793051 | Msa0012550:intron | 40.0% |
| TGTGGTTGCAAGTTTGACTA+TGG | - | chr1_1:18793234-18793253 | Msa0012550:intron | 40.0% | |
| TTGACTATGGTTTGACCGTA+AGG | - | chr1_1:18793247-18793266 | Msa0012550:intron | 40.0% | |
| ! | GTAGAGCATTATACTGGTGA+AGG | - | chr1_1:18793570-18793589 | Msa0012550:intron | 40.0% |
| TGCAAATGCTGTTCGAATAC+GGG | + | chr1_1:18793631-18793650 | None:intergenic | 40.0% | |
| AGATATTGTTCGAAGGCCAA+GGG | - | chr1_1:18793764-18793783 | Msa0012550:intron | 40.0% | |
| ! | ATCTGTTTTATGGAGAGAGG+AGG | - | chr1_1:18793851-18793870 | Msa0012550:intron | 40.0% |
| TTGGGATTGGAATGAGAAAG+TGG | - | chr1_1:18793889-18793908 | Msa0012550:intron | 40.0% | |
| AAAGACAGGGATCAATTTGG+TGG | - | chr1_1:18792562-18792581 | Msa0012550:CDS | 40.0% | |
| GCGACATAATAAGATACCGT+TGG | - | chr1_1:18792659-18792678 | Msa0012550:CDS | 40.0% | |
| TTGTTTATTGCGGAGAATCG+TGG | - | chr1_1:18792738-18792757 | Msa0012550:CDS | 40.0% | |
| ! | TAGATTCCTTATGTGTTGGC+AGG | - | chr1_1:18793031-18793050 | Msa0012550:intron | 40.0% |
| ! | AGATTCCTTATGTGTTGGCA+GGG | - | chr1_1:18793032-18793051 | Msa0012550:intron | 40.0% |
| TGTGGTTGCAAGTTTGACTA+TGG | - | chr1_1:18793234-18793253 | Msa0012550:intron | 40.0% | |
| TTGACTATGGTTTGACCGTA+AGG | - | chr1_1:18793247-18793266 | Msa0012550:intron | 40.0% | |
| ! | GTAGAGCATTATACTGGTGA+AGG | - | chr1_1:18793570-18793589 | Msa0012550:intron | 40.0% |
| TGCAAATGCTGTTCGAATAC+GGG | + | chr1_1:18793631-18793650 | None:intergenic | 40.0% | |
| AGATATTGTTCGAAGGCCAA+GGG | - | chr1_1:18793764-18793783 | Msa0012550:intron | 40.0% | |
| ! | ATCTGTTTTATGGAGAGAGG+AGG | - | chr1_1:18793851-18793870 | Msa0012550:intron | 40.0% |
| TTGGGATTGGAATGAGAAAG+TGG | - | chr1_1:18793889-18793908 | Msa0012550:intron | 40.0% | |
| ! | TGAAGGGTCAGTTGGGTTTT+AGG | - | chr1_1:18792389-18792408 | Msa0012550:CDS | 45.0% |
| CAGGCACGGTAACATAATGA+GGG | + | chr1_1:18793536-18793555 | None:intergenic | 45.0% | |
| TCAGGCACGGTAACATAATG+AGG | + | chr1_1:18793537-18793556 | None:intergenic | 45.0% | |
| ! | GATATGATGGCCTTACCTAG+TGG | - | chr1_1:18793684-18793703 | Msa0012550:intron | 45.0% |
| TGGCAAACTTCCACTAGGTA+AGG | + | chr1_1:18793697-18793716 | None:intergenic | 45.0% | |
| AAAGGTGGCAAACTTCCACT+AGG | + | chr1_1:18793702-18793721 | None:intergenic | 45.0% | |
| AGTTTGCCACCTTTGCAGTA+CGG | - | chr1_1:18793708-18793727 | Msa0012550:intron | 45.0% | |
| GAGATATTGTTCGAAGGCCA+AGG | - | chr1_1:18793763-18793782 | Msa0012550:intron | 45.0% | |
| ! | TGAAGGGTCAGTTGGGTTTT+AGG | - | chr1_1:18792389-18792408 | Msa0012550:CDS | 45.0% |
| CAGGCACGGTAACATAATGA+GGG | + | chr1_1:18793536-18793555 | None:intergenic | 45.0% | |
| TCAGGCACGGTAACATAATG+AGG | + | chr1_1:18793537-18793556 | None:intergenic | 45.0% | |
| ! | GATATGATGGCCTTACCTAG+TGG | - | chr1_1:18793684-18793703 | Msa0012550:intron | 45.0% |
| TGGCAAACTTCCACTAGGTA+AGG | + | chr1_1:18793697-18793716 | None:intergenic | 45.0% | |
| AAAGGTGGCAAACTTCCACT+AGG | + | chr1_1:18793702-18793721 | None:intergenic | 45.0% | |
| AGTTTGCCACCTTTGCAGTA+CGG | - | chr1_1:18793708-18793727 | Msa0012550:intron | 45.0% | |
| GAGATATTGTTCGAAGGCCA+AGG | - | chr1_1:18793763-18793782 | Msa0012550:intron | 45.0% | |
| CATAAGTTCGGGGCTATGGA+AGG | + | chr1_1:18793000-18793019 | None:intergenic | 50.0% | |
| CTGACATAAGTTCGGGGCTA+TGG | + | chr1_1:18793004-18793023 | None:intergenic | 50.0% | |
| GTTTGCCACCTTTGCAGTAC+GGG | - | chr1_1:18793709-18793728 | Msa0012550:intron | 50.0% | |
| AGATTGAGCTGCATCAGCCA+CGG | - | chr1_1:18793976-18793995 | Msa0012550:intron | 50.0% | |
| CATAAGTTCGGGGCTATGGA+AGG | + | chr1_1:18793000-18793019 | None:intergenic | 50.0% | |
| CTGACATAAGTTCGGGGCTA+TGG | + | chr1_1:18793004-18793023 | None:intergenic | 50.0% | |
| GTTTGCCACCTTTGCAGTAC+GGG | - | chr1_1:18793709-18793728 | Msa0012550:intron | 50.0% | |
| AGATTGAGCTGCATCAGCCA+CGG | - | chr1_1:18793976-18793995 | Msa0012550:intron | 50.0% | |
| CGGGGCTATGGAAGGAATAG+TGG | + | chr1_1:18792992-18793011 | None:intergenic | 55.0% | |
| TAGGAGCTCCCGTACTGCAA+AGG | + | chr1_1:18793720-18793739 | None:intergenic | 55.0% | |
| GATTGAGCTGCATCAGCCAC+GGG | - | chr1_1:18793977-18793996 | Msa0012550:intron | 55.0% | |
| ATTGAGCTGCATCAGCCACG+GGG | - | chr1_1:18793978-18793997 | Msa0012550:intron | 55.0% | |
| CGGGGCTATGGAAGGAATAG+TGG | + | chr1_1:18792992-18793011 | None:intergenic | 55.0% | |
| TAGGAGCTCCCGTACTGCAA+AGG | + | chr1_1:18793720-18793739 | None:intergenic | 55.0% | |
| GATTGAGCTGCATCAGCCAC+GGG | - | chr1_1:18793977-18793996 | Msa0012550:intron | 55.0% | |
| ATTGAGCTGCATCAGCCACG+GGG | - | chr1_1:18793978-18793997 | Msa0012550:intron | 55.0% | |
| CGCGACCCTGCCAACACATA+AGG | + | chr1_1:18793040-18793059 | None:intergenic | 60.0% | |
| ! | TGTGTTGGCAGGGTCGCGTT+TGG | - | chr1_1:18793042-18793061 | Msa0012550:intron | 60.0% |
| GAGCTCCCGTACTGCAAAGG+TGG | + | chr1_1:18793717-18793736 | None:intergenic | 60.0% | |
| CGCGACCCTGCCAACACATA+AGG | + | chr1_1:18793040-18793059 | None:intergenic | 60.0% | |
| ! | TGTGTTGGCAGGGTCGCGTT+TGG | - | chr1_1:18793042-18793061 | Msa0012550:intron | 60.0% |
| GAGCTCCCGTACTGCAAAGG+TGG | + | chr1_1:18793717-18793736 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18792388 | 18794052 | 18792388 | ID=Msa0012550;Name=Msa0012550 |
| chr1_1 | mRNA | 18792388 | 18794052 | 18792388 | ID=Msa0012550-mRNA-1;Parent=Msa0012550;Name=Msa0012550-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.5|0|0.5|2|0|195 |
| chr1_1 | exon | 18794046 | 18794052 | 18794046 | ID=Msa0012550-mRNA-1:exon:6977;Parent=Msa0012550-mRNA-1 |
| chr1_1 | exon | 18792388 | 18792968 | 18792388 | ID=Msa0012550-mRNA-1:exon:6976;Parent=Msa0012550-mRNA-1 |
| chr1_1 | CDS | 18794046 | 18794052 | 18794046 | ID=Msa0012550-mRNA-1:cds;Parent=Msa0012550-mRNA-1 |
| chr1_1 | CDS | 18792388 | 18792968 | 18792388 | ID=Msa0012550-mRNA-1:cds;Parent=Msa0012550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
