AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932150 MtrunA17_Chr6g0449061 96.026 453 11 1 2 454 3 448 0.0 883
Msa0932150 MtrunA17_Chr7g0251321 71.866 359 82 1 96 454 1 340 0.0 536
Msa0932150 MtrunA17_Chr7g0251331 52.796 447 207 2 15 458 2 447 1.40e-169 486
Msa0932150 MtrunA17_Chr1g0208821 49.672 457 224 3 1 452 1 456 1.78e-158 457
Msa0932150 MtrunA17_Chr1g0208881 51.570 446 211 2 16 457 5 449 6.14e-156 451
Msa0932150 MtrunA17_Chr1g0208891 51.253 439 213 1 19 457 7 444 2.36e-153 444
Msa0932150 MtrunA17_Chr6g0483361 49.883 429 212 2 21 447 10 437 5.07e-144 420
Msa0932150 MtrunA17_Chr6g0483381 49.431 439 218 3 13 449 5 441 1.51e-142 417
Msa0932150 MtrunA17_Chr6g0477961 49.635 411 204 2 39 447 30 439 9.86e-133 392
Msa0932150 MtrunA17_Chr1g0208791 45.721 444 233 3 13 451 17 457 8.36e-128 380
Msa0932150 MtrunA17_Chr8g0392601 43.448 435 245 1 27 461 3 436 7.01e-123 366
Msa0932150 MtrunA17_Chr6g0483351 50.549 364 178 1 96 457 1 364 1.47e-122 364
Msa0932150 MtrunA17_Chr6g0483341 44.084 431 241 0 31 461 36 466 5.34e-121 362
Msa0932150 MtrunA17_Chr6g0483331 42.482 419 241 0 31 449 7 425 6.52e-110 333
Msa0932150 MtrunA17_Chr2g0322671 36.211 475 282 5 1 457 1 472 1.97e-102 315
Msa0932150 MtrunA17_Chr4g0024501 35.258 485 285 4 1 457 1 484 9.33e-101 311
Msa0932150 MtrunA17_Chr2g0317131 38.530 449 267 3 13 453 12 459 1.44e-98 304
Msa0932150 MtrunA17_Chr6g0483161 39.130 368 205 1 94 461 1 349 4.27e-96 294
Msa0932150 MtrunA17_Chr2g0317151 38.255 447 273 2 7 453 6 449 8.94e-96 297
Msa0932150 MtrunA17_Chr2g0288281 39.452 365 221 0 96 460 1 365 2.94e-88 274
Msa0932150 MtrunA17_Chr2g0317161 37.560 418 258 3 35 451 30 445 5.01e-86 272
Msa0932150 MtrunA17_Chr2g0317171 35.682 440 275 3 19 451 13 451 5.96e-84 266
Msa0932150 MtrunA17_Chr8g0368001 34.716 458 292 5 3 457 16 469 8.80e-82 261
Msa0932150 MtrunA17_Chr2g0317221 38.162 359 222 0 93 451 7 365 3.49e-79 252
Msa0932150 MtrunA17_Chr5g0412771 35.116 430 277 2 32 461 52 479 7.60e-78 251
Msa0932150 MtrunA17_Chr5g0412541 33.554 453 286 5 8 451 3 449 2.72e-76 246
Msa0932150 MtrunA17_Chr1g0203791 33.769 459 284 7 2 449 27 476 3.87e-75 245
Msa0932150 MtrunA17_Chr5g0397991 32.409 469 299 8 2 461 32 491 1.59e-74 243
Msa0932150 MtrunA17_Chr5g0428251 31.579 437 292 4 19 451 36 469 3.54e-72 238
Msa0932150 MtrunA17_Chr6g0473701 32.308 455 297 6 3 452 95 543 2.74e-71 237
Msa0932150 MtrunA17_Chr6g0467321 31.947 457 293 4 18 460 21 473 8.00e-71 233
Msa0932150 MtrunA17_Chr7g0254521 32.609 460 301 4 4 461 2 454 2.77e-70 231
Msa0932150 MtrunA17_Chr3g0140931 30.786 458 304 6 11 461 26 477 1.80e-69 230
Msa0932150 MtrunA17_Chr5g0442331 31.510 457 293 3 14 451 5 460 1.16e-66 222
Msa0932150 MtrunA17_Chr3g0132531 33.933 445 289 3 7 451 20 459 3.36e-66 221
Msa0932150 MtrunA17_Chr7g0254511 31.567 453 300 5 8 457 3 448 2.35e-65 218
Msa0932150 MtrunA17_Chr7g0254531 35.519 366 235 1 96 461 1 365 1.44e-64 213
Msa0932150 MtrunA17_Chr8g0389801 31.132 424 285 4 32 453 19 437 1.81e-63 212
Msa0932150 MtrunA17_Chr1g0154441 34.358 358 230 2 96 451 1 355 2.87e-63 210
Msa0932150 MtrunA17_Chr4g0013031 31.132 424 281 5 36 453 66 484 2.48e-61 208
Msa0932150 MtrunA17_Chr5g0412571 35.635 362 224 3 94 451 38 394 1.05e-59 201
Msa0932150 MtrunA17_Chr1g0202761 31.019 432 295 2 26 457 33 461 5.60e-59 201
Msa0932150 MtrunA17_Chr6g0468531 30.973 452 300 6 13 457 3 449 8.82e-56 192
Msa0932150 MtrunA17_Chr2g0295631 30.090 442 292 3 28 453 12 452 1.80e-55 192
Msa0932150 MtrunA17_Chr6g0468521 29.011 455 304 7 13 457 3 448 1.29e-54 189
Msa0932150 MtrunA17_Chr6g0460541 32.698 367 239 3 94 457 3 364 5.11e-51 178
Msa0932150 MtrunA17_Chr6g0468511 29.412 442 301 5 13 448 3 439 9.09e-48 171
Msa0932150 MtrunA17_Chr7g0248051 30.892 437 299 2 20 456 54 487 2.27e-47 171
Msa0932150 MtrunA17_Chr6g0483241 43.889 180 101 0 94 273 1 180 5.60e-47 160
Msa0932150 MtrunA17_Chr6g0483264 44.578 166 92 0 277 442 2 167 9.99e-45 155
Msa0932150 MtrunA17_Chr7g0254501 34.686 271 175 1 181 451 2 270 1.44e-44 158
Msa0932150 MtrunA17_Chr3g0132541 28.372 430 247 6 31 456 32 404 1.81e-40 150
Msa0932150 MtrunA17_Chr5g0440661 29.363 361 182 9 96 451 1 293 2.69e-36 136
Msa0932150 MtrunA17_Chr8g0364761 30.000 270 187 2 37 305 54 322 1.58e-33 129
Msa0932150 MtrunA17_Chr6g0487091 28.521 284 178 6 181 453 97 366 3.84e-29 118
Msa0932150 MtrunA17_Chr6g0483221 41.727 139 81 0 323 461 6 144 1.08e-28 111
Msa0932150 MtrunA17_Chr8g0364751 42.424 132 76 0 320 451 16 147 9.27e-27 106
Msa0932150 MtrunA17_Chr6g0483261 44.167 120 67 0 323 442 6 125 1.70e-25 102
Msa0932150 MtrunA17_Chr5g0398571 28.625 269 181 3 192 454 1 264 1.02e-24 103
Msa0932150 MtrunA17_Chr6g0460521 34.595 185 121 0 273 457 1 185 2.06e-21 92.8
Msa0932150 MtrunA17_Chr6g0460531 27.106 273 177 7 7 273 3 259 5.85e-18 83.6
Msa0932150 MtrunA17_Chr5g0442311 25.824 182 127 2 96 273 1 178 1.04e-15 75.1
Msa0932150 MtrunA17_Chr6g0483281 49.296 71 36 0 207 277 5 75 1.27e-14 69.3
Msa0932150 MtrunA17_Chr6g0483291 45.946 74 36 1 26 99 4 73 7.39e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932150 AT1G66760.1 49.446 451 224 2 7 457 1 447 8.95e-165 473
Msa0932150 AT1G66760.2 49.446 451 224 2 7 457 1 447 1.80e-164 473
Msa0932150 AT1G64820.1 50.885 452 221 1 10 461 2 452 7.70e-161 464
Msa0932150 AT1G71140.1 51.972 431 206 1 27 457 16 445 3.40e-157 454
Msa0932150 AT1G66780.1 51.487 437 208 2 24 457 19 454 2.79e-153 444
Msa0932150 AT2G04100.1 50.476 420 207 1 33 452 26 444 5.60e-147 428
Msa0932150 AT2G04100.2 50.476 420 207 1 33 452 26 444 7.63e-147 427
Msa0932150 AT2G04090.1 50.000 420 209 1 33 452 26 444 6.81e-146 425
Msa0932150 AT1G15170.1 47.484 457 236 2 1 457 1 453 1.24e-145 425
Msa0932150 AT1G15150.1 47.775 427 222 1 31 457 25 450 3.93e-145 424
Msa0932150 AT1G15160.1 45.733 457 241 3 1 457 1 450 4.74e-144 421
Msa0932150 AT5G52450.1 48.444 450 218 3 1 449 1 437 6.15e-144 421
Msa0932150 AT2G04040.1 47.765 425 221 1 32 456 22 445 1.31e-143 419
Msa0932150 AT2G04080.1 45.147 443 242 1 14 456 4 445 6.22e-143 418
Msa0932150 AT2G04080.2 45.147 443 242 1 14 456 4 445 8.99e-143 417
Msa0932150 AT2G04050.1 47.489 438 223 2 20 457 16 446 1.50e-142 417
Msa0932150 AT2G04070.1 47.506 421 220 1 37 457 27 446 3.67e-141 413
Msa0932150 AT1G66760.4 48.363 397 201 2 7 403 1 393 1.12e-138 404
Msa0932150 AT2G34360.1 49.061 426 207 5 26 449 15 432 4.10e-136 400
Msa0932150 AT1G15180.1 45.695 453 241 3 1 452 1 449 4.66e-134 395
Msa0932150 AT1G73700.1 49.438 445 217 3 7 451 1 437 1.06e-133 394
Msa0932150 AT1G66760.3 50.157 319 159 0 139 457 1 319 2.55e-118 350
Msa0932150 AT2G34360.2 43.765 425 189 3 26 449 15 390 7.24e-115 345
Msa0932150 AT1G15150.2 48.338 331 171 0 127 457 4 334 9.47e-115 342
Msa0932150 AT1G15170.2 48.943 331 169 0 127 457 4 334 9.22e-114 339
Msa0932150 AT3G23550.1 38.411 453 266 4 18 461 6 454 6.97e-98 302
Msa0932150 AT3G23560.1 37.556 450 267 5 12 451 7 452 5.05e-94 292
Msa0932150 AT3G21690.1 36.384 448 273 2 9 456 35 470 2.07e-92 289
Msa0932150 AT1G61890.1 35.129 427 264 4 37 457 47 466 1.10e-86 274
Msa0932150 AT1G61890.2 35.129 427 264 4 37 457 47 466 2.37e-86 273
Msa0932150 AT1G15180.2 46.931 277 147 0 127 403 4 280 4.81e-86 270
Msa0932150 AT5G38030.1 36.385 426 269 2 32 457 40 463 1.11e-83 266
Msa0932150 AT1G11670.1 33.412 425 274 3 37 457 50 469 2.82e-82 263
Msa0932150 AT3G26590.1 33.766 462 292 3 8 457 4 463 6.53e-82 262
Msa0932150 AT1G61890.3 35.437 412 253 4 37 442 47 451 1.37e-81 260
Msa0932150 AT1G12950.1 36.150 426 270 2 32 457 62 485 2.58e-80 258
Msa0932150 AT4G21903.1 37.879 396 234 5 67 457 83 471 4.56e-79 254
Msa0932150 AT4G21910.2 35.915 426 261 5 37 457 57 475 7.20e-79 254
Msa0932150 AT4G21910.4 35.915 426 261 5 37 457 57 475 7.20e-79 254
Msa0932150 AT4G21903.2 37.879 396 234 5 67 457 83 471 7.76e-79 254
Msa0932150 AT4G21910.3 35.059 425 266 4 37 457 55 473 1.65e-78 253
Msa0932150 AT4G21910.1 35.059 425 266 4 37 457 55 473 1.65e-78 253
Msa0932150 AT4G21903.3 37.978 366 219 2 96 457 1 362 1.70e-77 247
Msa0932150 AT3G59030.1 34.670 424 274 3 35 457 49 470 2.17e-77 250
Msa0932150 AT3G23560.2 36.318 402 242 5 12 403 7 404 4.83e-76 244
Msa0932150 AT1G23300.1 34.943 435 276 5 24 456 32 461 1.98e-73 240
Msa0932150 AT1G47530.1 34.066 455 294 4 7 457 1 453 4.23e-73 238
Msa0932150 AT5G65380.1 34.444 450 284 5 6 451 7 449 2.56e-72 236
Msa0932150 AT5G10420.1 33.183 443 292 3 9 451 12 450 5.15e-72 236
Msa0932150 AT3G26590.2 37.293 362 226 1 96 457 1 361 6.81e-72 233
Msa0932150 AT4G29140.1 33.554 453 288 5 3 453 30 471 1.42e-71 236
Msa0932150 AT4G23030.1 33.623 461 293 5 11 461 1 458 1.45e-70 232
Msa0932150 AT1G33110.1 33.784 444 290 3 10 451 7 448 3.98e-70 231
Msa0932150 AT5G52050.1 32.265 468 290 9 1 453 1 456 4.07e-70 231
Msa0932150 AT5G44050.1 32.009 453 305 3 9 461 13 462 1.01e-69 230
Msa0932150 AT1G33100.1 34.389 442 287 3 10 451 7 445 5.90e-69 228
Msa0932150 AT1G33090.1 34.521 449 280 6 10 451 7 448 7.17e-67 222
Msa0932150 AT2G38510.1 29.535 430 298 3 36 461 5 433 6.63e-66 219
Msa0932150 AT1G71870.1 31.278 454 289 6 18 452 6 455 1.54e-65 219
Msa0932150 AT1G33080.2 33.333 444 292 3 10 451 7 448 4.76e-64 215
Msa0932150 AT1G33080.1 33.333 444 292 3 10 451 7 448 5.79e-64 214
Msa0932150 AT1G47530.2 35.635 362 232 1 96 457 1 361 2.08e-63 210
Msa0932150 AT1G58340.1 30.549 419 286 3 35 451 56 471 1.61e-62 212
Msa0932150 AT4G00350.1 34.266 429 269 7 37 460 88 508 2.85e-62 211
Msa0932150 AT5G19700.1 31.442 423 279 5 36 453 35 451 6.49e-61 207
Msa0932150 AT3G59030.2 32.703 370 246 3 35 403 49 416 4.23e-58 197
Msa0932150 AT4G22790.1 30.905 453 296 5 3 451 6 445 8.76e-57 196
Msa0932150 AT5G49130.1 29.792 433 289 4 35 453 24 455 4.35e-56 194
Msa0932150 AT4G25640.1 31.494 435 295 2 18 452 15 446 1.60e-55 192
Msa0932150 AT4G25640.2 31.494 435 295 2 18 452 15 446 5.26e-55 191
Msa0932150 AT5G17700.2 29.821 446 303 4 10 451 7 446 5.09e-53 186
Msa0932150 AT5G17700.1 29.821 446 303 4 10 451 7 446 5.09e-53 186
Msa0932150 AT1G33110.2 31.830 399 264 5 10 404 7 401 2.48e-52 181
Msa0932150 AT4G25640.3 31.579 418 283 2 18 435 15 429 7.10e-52 182
Msa0932150 AT3G03620.2 29.291 437 302 5 19 451 16 449 2.08e-49 176
Msa0932150 AT3G03620.1 29.291 437 302 5 19 451 16 449 2.08e-49 176
Msa0932150 AT5G17700.3 27.387 398 279 4 10 403 7 398 1.10e-36 139
Msa0932150 AT2G04066.1 49.000 100 51 0 357 456 41 140 4.85e-27 107

Find 108 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCTATTTGTTGGATTC+TGG 0.144927 6_3:+149841 Msa0932150:CDS
ACTAACATCTAGACATATTT+TGG 0.171532 6_3:+151661 Msa0932150:three_prime_UTR
ATTCCTATTGGTTTGTTATT+AGG 0.201827 6_3:+151227 Msa0932150:CDS
TAGCTATTGGAATTTCTTAT+TGG 0.229128 6_3:+149900 Msa0932150:CDS
TTCCTTCTGGACTCATGTTT+TGG 0.233890 6_3:+150038 Msa0932150:CDS
TGCAAATATGCTATTCCTTC+TGG 0.235933 6_3:+150025 Msa0932150:CDS
GTTAGAGTGGTTGTGATTAT+TGG 0.240480 6_3:+150540 Msa0932150:CDS
ACTCGTGTTTCAAATGAATT+AGG 0.240783 6_3:+150486 Msa0932150:CDS
TACCTCATTCCCGCTCTATT+TGG 0.243762 6_3:+149725 Msa0932150:CDS
GTTAGTGCTGATAGTCTAAT+TGG 0.244051 6_3:+150690 Msa0932150:CDS
TGTGAATTACATTGCGGATA+TGG 0.251319 6_3:+150647 Msa0932150:CDS
AGTCTAATTGGAGCTCTTTC+AGG 0.262673 6_3:+150702 Msa0932150:CDS
ACAGCTCCCTTAGCTGTCTT+TGG 0.262861 6_3:-150519 None:intergenic
AATATCCACACAAGAGATAT+TGG 0.269827 6_3:-149632 None:intergenic
GGTATACTTGTTTCATTCTC+TGG 0.275398 6_3:+148416 Msa0932150:CDS
ATTGGAGCTGCTTTAGCTAT+TGG 0.308771 6_3:+149887 Msa0932150:CDS
CTTATTGGTTGAATGTGATA+TGG 0.309579 6_3:+149915 Msa0932150:CDS
GAGGTTTCAAGTTGAGGATT+AGG 0.328796 6_3:-150187 None:intergenic
GGTTGAATGTGATATGGCTT+TGG 0.339522 6_3:+149921 Msa0932150:CDS
TATATTGTGGGAATTCCTAT+TGG 0.359116 6_3:+151215 Msa0932150:CDS
AAAACCAGAATCCAACAAAT+AGG 0.359230 6_3:-149845 None:intergenic
TCAAGTGGTTTCTCTTATGA+TGG 0.367964 6_3:+148382 Msa0932150:CDS
GTTGAAGAAGGTGAGTTTCA+TGG 0.370676 6_3:+148319 Msa0932150:CDS
GTTGAATGTGATATGGCTTT+GGG 0.371323 6_3:+149922 Msa0932150:CDS
ACCTTTGGTGCAGAGGAGTA+TGG 0.372023 6_3:+149554 Msa0932150:CDS
TTGTGGATGGGAACTCTATC+AGG 0.380221 6_3:+151278 Msa0932150:CDS
TTCTTCATTCCATATGCAAT+TGG 0.387110 6_3:+150343 Msa0932150:CDS
AAACCTCGGTTCTTTCTGTC+TGG 0.401635 6_3:+150203 Msa0932150:CDS
ATGAGTAGAAAACACAATCT+TGG 0.406242 6_3:-149978 None:intergenic
CTTATGATGGTGGGACATCT+TGG 0.426032 6_3:+148395 Msa0932150:CDS
CGAGCTACATGAGACATTCC+AGG 0.426985 6_3:-149689 None:intergenic
AGGAGGTGGATTTCAAGAAA+TGG 0.431562 6_3:+151166 Msa0932150:CDS
GAAAGATCATTCCCTGAGTC+TGG 0.432954 6_3:-149781 None:intergenic
AAACCTAATAACAAACCAAT+AGG 0.436422 6_3:-151230 None:intergenic
GCATTGCAGTTGGGAATGGC+TGG 0.439253 6_3:+149506 Msa0932150:intron
AGCATGCTCTCAAAATTTGT+AGG 0.446532 6_3:-151734 None:intergenic
TTGTAACTGCATTAACTGAT+TGG 0.453816 6_3:+151329 Msa0932150:exon
ACAAAGAAATTAATCATGAT+AGG 0.455982 6_3:+151554 Msa0932150:three_prime_UTR
GGAGGTGGATTTCAAGAAAT+GGG 0.458931 6_3:+151167 Msa0932150:CDS
CCTTGGAGCTTACTATATTG+TGG 0.467917 6_3:+151202 Msa0932150:CDS
GTTTGCATTGCAGTTGGGAA+TGG 0.469251 6_3:+149502 Msa0932150:intron
ATATCCACACAAGAGATATT+GGG 0.469336 6_3:-149631 None:intergenic
GCAGAAGCTCCAATTGCATA+TGG 0.475350 6_3:-150352 None:intergenic
TTGCTTATACAGCTGTTGTA+TGG 0.475962 6_3:+151609 Msa0932150:three_prime_UTR
CTTGGAGCTTACTATATTGT+GGG 0.480379 6_3:+151203 Msa0932150:CDS
ACACTATGTGGACAAACCTT+TGG 0.487914 6_3:+149539 Msa0932150:CDS
TCCATACTCCTCTGCACCAA+AGG 0.494105 6_3:-149555 None:intergenic
GAGTTTCATGGCAGCTCCAA+TGG 0.497826 6_3:+148331 Msa0932150:CDS
GCAGGGGTTGCTAGAGGAGG+TGG 0.498862 6_3:+151152 Msa0932150:intron
GATTCGCTATTTCCAGACTC+AGG 0.500456 6_3:+149769 Msa0932150:CDS
AGTGGTTTCTCTTATGATGG+TGG 0.502914 6_3:+148385 Msa0932150:CDS
GCAGAGGAGTATGGAAAACT+TGG 0.503242 6_3:+149563 Msa0932150:CDS
CATCTAAAATTAAATGCGAA+GGG 0.503899 6_3:+151254 Msa0932150:CDS
ATTAACTGATTGGCAGAAAG+AGG 0.504417 6_3:+151339 Msa0932150:three_prime_UTR
AATTAAATGCGAAGGGATTG+TGG 0.504525 6_3:+151261 Msa0932150:CDS
GTTTCAAATGAATTAGGAGC+AGG 0.508966 6_3:+150492 Msa0932150:CDS
AGAACCGAGGTTTCAAGTTG+AGG 0.511415 6_3:-150193 None:intergenic
TTCACAATATCTTCTTCAAG+TGG 0.512019 6_3:+148367 Msa0932150:CDS
GTTTCCCAATATCTCTTGTG+TGG 0.512963 6_3:+149627 Msa0932150:CDS
AAATGCGAAGGGATTGTGGA+TGG 0.515962 6_3:+151265 Msa0932150:CDS
AAACTCTAGAGAGATGAGTA+AGG 0.519910 6_3:+148214 Msa0932150:CDS
TCATCACTCTTTCTTAGCAA+TGG 0.528379 6_3:-148248 None:intergenic
CTAAAATATTTCTAAAGCAA+AGG 0.529386 6_3:-150596 None:intergenic
TCATCTAAAATTAAATGCGA+AGG 0.529668 6_3:+151253 Msa0932150:CDS
ATTCATTCAAGAGTTGAAGA+AGG 0.535676 6_3:+148307 Msa0932150:CDS
GAAACTGTTACAGCTACCAT+TGG 0.542723 6_3:-148347 None:intergenic
AACTAACAACACATTGGTGG+TGG 0.546469 6_3:+151523 Msa0932150:three_prime_UTR
GGAAATCCAAAGACAGCTAA+GGG 0.549690 6_3:+150513 Msa0932150:CDS
AGGAAATCCAAAGACAGCTA+AGG 0.552623 6_3:+150512 Msa0932150:CDS
GTGGTTTCTCTTATGATGGT+GGG 0.552777 6_3:+148386 Msa0932150:CDS
CATTGCAGGCAACAAAAGCA+AGG 0.553104 6_3:+151474 Msa0932150:intron
CAACTCTTCCATCACTTCCA+TGG 0.554813 6_3:-148271 None:intergenic
ATAGCATATTTGCAGAACTC+TGG 0.558784 6_3:-150016 None:intergenic
TCAGGGAATGATCTTTCCCA+TGG 0.560267 6_3:+149787 Msa0932150:CDS
TAGAGAGATGAGTAAGGAGG+TGG 0.565909 6_3:+148220 Msa0932150:CDS
AGCCAAATAGAGCGGGAATG+AGG 0.570337 6_3:-149727 None:intergenic
TGGACAAACCTTTGGTGCAG+AGG 0.570653 6_3:+149547 Msa0932150:CDS
TACCAAAACATGAGTCCAGA+AGG 0.573401 6_3:-150040 None:intergenic
ATTCGCTATTTCCAGACTCA+GGG 0.576880 6_3:+149770 Msa0932150:CDS
CATATTTGCAGAACTCTGGT+AGG 0.578691 6_3:-150012 None:intergenic
AGCTAAGGGAGCTGTTAGAG+TGG 0.582031 6_3:+150527 Msa0932150:CDS
TTGAGGATTAGGTAAAAGCC+CGG 0.583309 6_3:-150176 None:intergenic
TTCAGCAAAAGACATGGCAA+TGG 0.584361 6_3:-148444 None:intergenic
AGTGCATAGCCAAATAGAGC+GGG 0.584898 6_3:-149734 None:intergenic
AGTGATGACCATGGAAGTGA+TGG 0.586777 6_3:+148263 Msa0932150:CDS
CTAACAGAAACACAAAGAAG+AGG 0.588544 6_3:-150672 None:intergenic
AAGTTGGGATTAGGACACAT+TGG 0.599322 6_3:+149869 Msa0932150:CDS
TAATCCTCAACTTGAAACCT+CGG 0.601964 6_3:+150189 Msa0932150:CDS
ATGCAATTGGAGCTTCTGCA+AGG 0.601986 6_3:+150356 Msa0932150:CDS
AGGCAACAAAAGCAAGGGAG+AGG 0.607625 6_3:+151480 Msa0932150:intron
AATTAAAATAAGAATCTCAA+AGG 0.607660 6_3:-150152 None:intergenic
GAGCTACATGAGACATTCCA+GGG 0.620444 6_3:-149688 None:intergenic
AATGCGAAGGGATTGTGGAT+GGG 0.620482 6_3:+151266 Msa0932150:CDS
CCACAATATAGTAAGCTCCA+AGG 0.626718 6_3:-151202 None:intergenic
TGAACTGCAGGGGTTGCTAG+AGG 0.635927 6_3:+151146 Msa0932150:intron
ACTGCAGGGGTTGCTAGAGG+AGG 0.647610 6_3:+151149 Msa0932150:intron
GAGGTGGATTTCAAGAAATG+GGG 0.650274 6_3:+151168 Msa0932150:CDS
CTCTAGAGAGATGAGTAAGG+AGG 0.653478 6_3:+148217 Msa0932150:CDS
AGTAACTTCAGCAAAAGACA+TGG 0.654565 6_3:-148450 None:intergenic
ATTGCAGGCAACAAAAGCAA+GGG 0.658902 6_3:+151475 Msa0932150:intron
TGTGATTATTGGAATTGCTG+AGG 0.666119 6_3:+150551 Msa0932150:CDS
AGGTGGATTTCAAGAAATGG+GGG 0.668457 6_3:+151169 Msa0932150:CDS
ACAAGTTGTGAATTACATTG+CGG 0.676878 6_3:+150641 Msa0932150:CDS
CTAAGAAAGAGTGATGACCA+TGG 0.683327 6_3:+148254 Msa0932150:CDS
TGGAATGAAGAAGTGCAATG+AGG 0.693110 6_3:-150332 None:intergenic
GGAGCATTAGAAACACTATG+TGG 0.708532 6_3:+149527 Msa0932150:CDS
AAGTGCATAGCCAAATAGAG+CGG 0.722956 6_3:-149735 None:intergenic
TCACCAGACAGAAAGAACCG+AGG 0.782249 6_3:-150206 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGAATATACAAAA+GGG - chr6_3:149273-149292 None:intergenic 10.0%
!! TAGATTAAATTCATTAAATA+AGG - chr6_3:149363-149382 None:intergenic 10.0%
!! CAAAAAAATGAATATACAAA+AGG - chr6_3:149274-149293 None:intergenic 15.0%
!!! TTTGTATATTCATTTTTTTG+AGG + chr6_3:149274-149293 Msa0932150:intron 15.0%
!!! TTGTATATTCATTTTTTTGA+GGG + chr6_3:149275-149294 Msa0932150:intron 15.0%
!! AATTAAAATAAGAATCTCAA+AGG - chr6_3:150155-150174 None:intergenic 15.0%
!!! CTAGATTTTAATGTATATTT+TGG + chr6_3:151041-151060 Msa0932150:intron 15.0%
!! AAAATCAGAAGAAGAAAAAT+AGG - chr6_3:148613-148632 None:intergenic 20.0%
!!! AAAGTACTAATCAAACATTT+AGG - chr6_3:148657-148676 None:intergenic 20.0%
!! TGTACAAATACAGAAAATTT+AGG - chr6_3:149184-149203 None:intergenic 20.0%
!! GCTTCATAGTATAAATATAA+TGG + chr6_3:149457-149476 Msa0932150:intron 20.0%
!! TATCACATGATATTATTGTT+AGG - chr6_3:150406-150425 None:intergenic 20.0%
!!! CTAAAATATTTCTAAAGCAA+AGG - chr6_3:150599-150618 None:intergenic 20.0%
!!! CTTTGCTTTAGAAATATTTT+AGG + chr6_3:150597-150616 Msa0932150:CDS 20.0%
!! AAATTTCATTTACTTTCTGA+GGG + chr6_3:150932-150951 Msa0932150:intron 20.0%
!!! TTTTAGAATGAAGATATTTG+TGG - chr6_3:151090-151109 None:intergenic 20.0%
!! AATAAAAACTAACAACACAT+TGG + chr6_3:151517-151536 Msa0932150:three_prime_UTR 20.0%
!! ACAAAGAAATTAATCATGAT+AGG + chr6_3:151554-151573 Msa0932150:three_prime_UTR 20.0%
!!! TTTCCTTTTCTTGTTTTTCT+TGG + chr6_3:148522-148541 Msa0932150:intron 25.0%
! AATCCAAGAAAAACAAGAAA+AGG - chr6_3:148528-148547 None:intergenic 25.0%
!! TTCTTCTTCTGATTTTTGTT+TGG + chr6_3:148617-148636 Msa0932150:intron 25.0%
!!! TTCTGATTTTTGTTTGGATT+AGG + chr6_3:148623-148642 Msa0932150:intron 25.0%
! ACTTTGTAACAGTAATAAAC+AGG + chr6_3:148672-148691 Msa0932150:intron 25.0%
! CTTCACTCATTATATTCAAT+AGG - chr6_3:148792-148811 None:intergenic 25.0%
!! ATCATTCTCAATTTTCTTGT+GGG + chr6_3:148822-148841 Msa0932150:intron 25.0%
!! TAGTCCTCATATTTTCATTT+TGG - chr6_3:148951-148970 None:intergenic 25.0%
! ATGAAAATATGAGGACTAAT+TGG + chr6_3:148953-148972 Msa0932150:intron 25.0%
! TGAAAATATGAGGACTAATT+GGG + chr6_3:148954-148973 Msa0932150:intron 25.0%
! AATTCTCCTAGAAAATTATG+AGG + chr6_3:149002-149021 Msa0932150:intron 25.0%
! ATTCTCCTAGAAAATTATGA+GGG + chr6_3:149003-149022 Msa0932150:intron 25.0%
! TTATGAGGGTTGTATATAAA+TGG + chr6_3:149017-149036 Msa0932150:intron 25.0%
! AATATACAAAAGGGACATTA+AGG - chr6_3:149264-149283 None:intergenic 25.0%
! AAGGTATAAATATTTAGACG+AGG - chr6_3:149344-149363 None:intergenic 25.0%
! TAGCTATTGGAATTTCTTAT+TGG + chr6_3:149900-149919 Msa0932150:CDS 25.0%
!!! CAATATTGTGTAGTTTTGAA+TGG + chr6_3:150125-150144 Msa0932150:intron 25.0%
!!! GAGATTCTTATTTTAATTGC+CGG + chr6_3:150157-150176 Msa0932150:CDS 25.0%
!!! AGATTCTTATTTTAATTGCC+GGG + chr6_3:150158-150177 Msa0932150:CDS 25.0%
! ATTTATAATGCATTGTCCTA+AGG + chr6_3:150244-150263 Msa0932150:intron 25.0%
! TTTATAATGCATTGTCCTAA+GGG + chr6_3:150245-150264 Msa0932150:intron 25.0%
! TATTGTTAGGATTATGTGTA+TGG - chr6_3:150393-150412 None:intergenic 25.0%
! TGCTCTAATATATAGTCATT+AGG + chr6_3:150843-150862 Msa0932150:intron 25.0%
! AGTTGTGTGAATATAACAAT+AGG + chr6_3:150897-150916 Msa0932150:intron 25.0%
! GTTGTGTGAATATAACAATA+GGG + chr6_3:150898-150917 Msa0932150:intron 25.0%
! CAAATTTCATTTACTTTCTG+AGG + chr6_3:150931-150950 Msa0932150:intron 25.0%
!!! ATTCCTATTGGTTTGTTATT+AGG + chr6_3:151227-151246 Msa0932150:CDS 25.0%
! AAACCTAATAACAAACCAAT+AGG - chr6_3:151233-151252 None:intergenic 25.0%
!! TCATCTAAAATTAAATGCGA+AGG + chr6_3:151253-151272 Msa0932150:CDS 25.0%
!! CATCTAAAATTAAATGCGAA+GGG + chr6_3:151254-151273 Msa0932150:CDS 25.0%
!! AAAGAAAAAAGTGCACAATT+TGG - chr6_3:151398-151417 None:intergenic 25.0%
! TTGTTGCAAAAAAACAAATG+TGG - chr6_3:151425-151444 None:intergenic 25.0%
!!! TTGTTTTTTTGCAACAATTG+AGG + chr6_3:151428-151447 Msa0932150:intron 25.0%
!!! TGTTGTTAGTTTTTATTGAC+TGG - chr6_3:151514-151533 None:intergenic 25.0%
!! ACTAACATCTAGACATATTT+TGG + chr6_3:151661-151680 Msa0932150:three_prime_UTR 25.0%
ATTCATTCAAGAGTTGAAGA+AGG + chr6_3:148307-148326 Msa0932150:CDS 30.0%
TTCACAATATCTTCTTCAAG+TGG + chr6_3:148367-148386 Msa0932150:CDS 30.0%
! GATCATTCTCAATTTTCTTG+TGG + chr6_3:148821-148840 Msa0932150:intron 30.0%
TCCATAAATCGTTGTATTAG+AGG + chr6_3:148912-148931 Msa0932150:intron 30.0%
CCATAAATCGTTGTATTAGA+GGG + chr6_3:148913-148932 Msa0932150:intron 30.0%
GTCTCCAAAATGAAAATATG+AGG + chr6_3:148944-148963 Msa0932150:intron 30.0%
! TACAACCCTCATAATTTTCT+AGG - chr6_3:149011-149030 None:intergenic 30.0%
GGATTTGTATACCATTCATT+TGG + chr6_3:149153-149172 Msa0932150:intron 30.0%
! TTTAGGATTCTCCAAATGAA+TGG - chr6_3:149167-149186 None:intergenic 30.0%
ATATCCACACAAGAGATATT+GGG - chr6_3:149634-149653 None:intergenic 30.0%
AATATCCACACAAGAGATAT+TGG - chr6_3:149635-149654 None:intergenic 30.0%
! TTTTGCACATTCCTATTTGT+TGG + chr6_3:149834-149853 Msa0932150:CDS 30.0%
AAAACCAGAATCCAACAAAT+AGG - chr6_3:149848-149867 None:intergenic 30.0%
!!! TTGGATTCTGGTTTTTAAGT+TGG + chr6_3:149853-149872 Msa0932150:CDS 30.0%
!!! TGGATTCTGGTTTTTAAGTT+GGG + chr6_3:149854-149873 Msa0932150:CDS 30.0%
! CTTATTGGTTGAATGTGATA+TGG + chr6_3:149915-149934 Msa0932150:CDS 30.0%
!!! ATCTTGGTTTTTTGACATGA+TGG - chr6_3:149965-149984 None:intergenic 30.0%
ATGAGTAGAAAACACAATCT+TGG - chr6_3:149981-150000 None:intergenic 30.0%
!!! TATTGTGTAGTTTTGAATGG+TGG + chr6_3:150128-150147 Msa0932150:intron 30.0%
TTCTTCATTCCATATGCAAT+TGG + chr6_3:150343-150362 Msa0932150:CDS 30.0%
ACTCGTGTTTCAAATGAATT+AGG + chr6_3:150486-150505 Msa0932150:CDS 30.0%
ACAAGTTGTGAATTACATTG+CGG + chr6_3:150641-150660 Msa0932150:CDS 30.0%
! AGTACACATTCACGTTTTTA+GGG + chr6_3:150985-151004 Msa0932150:intron 30.0%
ATATAATGAATGTGAACTGC+AGG + chr6_3:151134-151153 Msa0932150:intron 30.0%
TATAATGAATGTGAACTGCA+GGG + chr6_3:151135-151154 Msa0932150:intron 30.0%
TATATTGTGGGAATTCCTAT+TGG + chr6_3:151215-151234 Msa0932150:CDS 30.0%
TTGTAACTGCATTAACTGAT+TGG + chr6_3:151329-151348 Msa0932150:exon 30.0%
AAAAACTAACAACACATTGG+TGG + chr6_3:151520-151539 Msa0932150:three_prime_UTR 30.0%
! TGTACATGTGATTTTTGTAC+TGG + chr6_3:151685-151704 Msa0932150:three_prime_UTR 30.0%
! AAACTCTAGAGAGATGAGTA+AGG + chr6_3:148214-148233 Msa0932150:CDS 35.0%
TCATCACTCTTTCTTAGCAA+TGG - chr6_3:148251-148270 None:intergenic 35.0%
TCAAGTGGTTTCTCTTATGA+TGG + chr6_3:148382-148401 Msa0932150:CDS 35.0%
GGTATACTTGTTTCATTCTC+TGG + chr6_3:148416-148435 Msa0932150:CDS 35.0%
AGTAACTTCAGCAAAAGACA+TGG - chr6_3:148453-148472 None:intergenic 35.0%
! ATGTCTTTTGCTGAAGTTAC+TGG + chr6_3:148452-148471 Msa0932150:CDS 35.0%
AGAGAGAAGAAGAACATACA+AGG - chr6_3:148487-148506 None:intergenic 35.0%
TAAACAGGATCTCATGTGAA+AGG + chr6_3:148687-148706 Msa0932150:intron 35.0%
TGTCACTCTTTGATCTTGTT+AGG - chr6_3:148726-148745 None:intergenic 35.0%
CCCTCTAATACAACGATTTA+TGG - chr6_3:148916-148935 None:intergenic 35.0%
GTGAAGACTATAGAGTAGTT+GGG + chr6_3:149039-149058 Msa0932150:intron 35.0%
TGTACATCTCAACGATCTAA+CGG + chr6_3:149198-149217 Msa0932150:intron 35.0%
! ATCTAACGGCTCAAGTTTTA+GGG + chr6_3:149212-149231 Msa0932150:intron 35.0%
! ACATTAAGGTGTTTGAATGG+TGG - chr6_3:149250-149269 None:intergenic 35.0%
GACATTATGACTGTGAAATG+TGG - chr6_3:149302-149321 None:intergenic 35.0%
TTTAGTATCAATGTCGTGTC+TGG + chr6_3:149418-149437 Msa0932150:intron 35.0%
! TTTCTTGTTTGCATTGCAGT+TGG + chr6_3:149496-149515 Msa0932150:intron 35.0%
! TTCTTGTTTGCATTGCAGTT+GGG + chr6_3:149497-149516 Msa0932150:intron 35.0%
GATACTGAGCTAAAAACCAT+GGG - chr6_3:149806-149825 None:intergenic 35.0%
AGATACTGAGCTAAAAACCA+TGG - chr6_3:149807-149826 None:intergenic 35.0%
! CATTCCTATTTGTTGGATTC+TGG + chr6_3:149841-149860 Msa0932150:CDS 35.0%
!!! CTGGTTTTTAAGTTGGGATT+AGG + chr6_3:149860-149879 Msa0932150:CDS 35.0%
GTTGAATGTGATATGGCTTT+GGG + chr6_3:149922-149941 Msa0932150:CDS 35.0%
ATAGCATATTTGCAGAACTC+TGG - chr6_3:150019-150038 None:intergenic 35.0%
TGCAAATATGCTATTCCTTC+TGG + chr6_3:150025-150044 Msa0932150:CDS 35.0%
TAATCCTCAACTTGAAACCT+CGG + chr6_3:150189-150208 Msa0932150:CDS 35.0%
AACACAAACATCATGACATG+GGG - chr6_3:150455-150474 None:intergenic 35.0%
CAACACAAACATCATGACAT+GGG - chr6_3:150456-150475 None:intergenic 35.0%
ACAACACAAACATCATGACA+TGG - chr6_3:150457-150476 None:intergenic 35.0%
GTTTCAAATGAATTAGGAGC+AGG + chr6_3:150492-150511 Msa0932150:CDS 35.0%
GTTAGAGTGGTTGTGATTAT+TGG + chr6_3:150540-150559 Msa0932150:CDS 35.0%
TGTGATTATTGGAATTGCTG+AGG + chr6_3:150551-150570 Msa0932150:CDS 35.0%
TGTGAATTACATTGCGGATA+TGG + chr6_3:150647-150666 Msa0932150:CDS 35.0%
CTAACAGAAACACAAAGAAG+AGG - chr6_3:150675-150694 None:intergenic 35.0%
!! GTTAGTGCTGATAGTCTAAT+TGG + chr6_3:150690-150709 Msa0932150:CDS 35.0%
! CAGTACACATTCACGTTTTT+AGG + chr6_3:150984-151003 Msa0932150:intron 35.0%
ATAATGAATGTGAACTGCAG+GGG + chr6_3:151136-151155 Msa0932150:intron 35.0%
CTTGGAGCTTACTATATTGT+GGG + chr6_3:151203-151222 Msa0932150:CDS 35.0%
AATTAAATGCGAAGGGATTG+TGG + chr6_3:151261-151280 Msa0932150:CDS 35.0%
ATTAACTGATTGGCAGAAAG+AGG + chr6_3:151339-151358 Msa0932150:three_prime_UTR 35.0%
TTGCTTATACAGCTGTTGTA+TGG + chr6_3:151609-151628 Msa0932150:three_prime_UTR 35.0%
AGCATGCTCTCAAAATTTGT+AGG - chr6_3:151737-151756 None:intergenic 35.0%
!! CAAATTTTGAGAGCATGCTT+TGG + chr6_3:151738-151757 Msa0932150:three_prime_UTR 35.0%
CTAAGAAAGAGTGATGACCA+TGG + chr6_3:148254-148273 Msa0932150:CDS 40.0%
GTTGAAGAAGGTGAGTTTCA+TGG + chr6_3:148319-148338 Msa0932150:CDS 40.0%
GAAACTGTTACAGCTACCAT+TGG - chr6_3:148350-148369 None:intergenic 40.0%
AGTGGTTTCTCTTATGATGG+TGG + chr6_3:148385-148404 Msa0932150:CDS 40.0%
GTGGTTTCTCTTATGATGGT+GGG + chr6_3:148386-148405 Msa0932150:CDS 40.0%
TTCAGCAAAAGACATGGCAA+TGG - chr6_3:148447-148466 None:intergenic 40.0%
GCTTAGAGATGCAAACTAGT+TGG - chr6_3:148562-148581 None:intergenic 40.0%
GGTGAAGACTATAGAGTAGT+TGG + chr6_3:149038-149057 Msa0932150:intron 40.0%
GACTATAGAGTAGTTGGGTA+TGG + chr6_3:149044-149063 Msa0932150:intron 40.0%
ATAGAGTAGTTGGGTATGGT+TGG + chr6_3:149048-149067 Msa0932150:intron 40.0%
CTTATTTCAACTCTGCGTGT+AGG - chr6_3:149134-149153 None:intergenic 40.0%
CTACACGCAGAGTTGAAATA+AGG + chr6_3:149132-149151 Msa0932150:intron 40.0%
! GATCTAACGGCTCAAGTTTT+AGG + chr6_3:149211-149230 Msa0932150:intron 40.0%
! GGGACATTAAGGTGTTTGAA+TGG - chr6_3:149253-149272 None:intergenic 40.0%
! GGAGCATTAGAAACACTATG+TGG + chr6_3:149527-149546 Msa0932150:CDS 40.0%
ACACTATGTGGACAAACCTT+TGG + chr6_3:149539-149558 Msa0932150:CDS 40.0%
GTTTCCCAATATCTCTTGTG+TGG + chr6_3:149627-149646 Msa0932150:CDS 40.0%
!!! CTGTTTTTTAGTCAAGACCC+TGG + chr6_3:149671-149690 Msa0932150:CDS 40.0%
AAGTGCATAGCCAAATAGAG+CGG - chr6_3:149738-149757 None:intergenic 40.0%
! ATTCGCTATTTCCAGACTCA+GGG + chr6_3:149770-149789 Msa0932150:CDS 40.0%
AAGTTGGGATTAGGACACAT+TGG + chr6_3:149869-149888 Msa0932150:CDS 40.0%
! ATTGGAGCTGCTTTAGCTAT+TGG + chr6_3:149887-149906 Msa0932150:CDS 40.0%
GGTTGAATGTGATATGGCTT+TGG + chr6_3:149921-149940 Msa0932150:CDS 40.0%
CATATTTGCAGAACTCTGGT+AGG - chr6_3:150015-150034 None:intergenic 40.0%
! TTCCTTCTGGACTCATGTTT+TGG + chr6_3:150038-150057 Msa0932150:CDS 40.0%
TACCAAAACATGAGTCCAGA+AGG - chr6_3:150043-150062 None:intergenic 40.0%
TTGAGGATTAGGTAAAAGCC+CGG - chr6_3:150179-150198 None:intergenic 40.0%
!! GAGGTTTCAAGTTGAGGATT+AGG - chr6_3:150190-150209 None:intergenic 40.0%
ACATTGCATAGTTCACCCTT+AGG - chr6_3:150263-150282 None:intergenic 40.0%
! TGGAATGAAGAAGTGCAATG+AGG - chr6_3:150335-150354 None:intergenic 40.0%
ACACAAACATCATGACATGG+GGG - chr6_3:150454-150473 None:intergenic 40.0%
AGGAAATCCAAAGACAGCTA+AGG + chr6_3:150512-150531 Msa0932150:CDS 40.0%
GGAAATCCAAAGACAGCTAA+GGG + chr6_3:150513-150532 Msa0932150:CDS 40.0%
AGTCTAATTGGAGCTCTTTC+AGG + chr6_3:150702-150721 Msa0932150:CDS 40.0%
GTCGATGAATCGAGATTAGA+CGG - chr6_3:151068-151087 None:intergenic 40.0%
! AGGAGGTGGATTTCAAGAAA+TGG + chr6_3:151166-151185 Msa0932150:CDS 40.0%
! GGAGGTGGATTTCAAGAAAT+GGG + chr6_3:151167-151186 Msa0932150:CDS 40.0%
! GAGGTGGATTTCAAGAAATG+GGG + chr6_3:151168-151187 Msa0932150:CDS 40.0%
! AGGTGGATTTCAAGAAATGG+GGG + chr6_3:151169-151188 Msa0932150:CDS 40.0%
CCACAATATAGTAAGCTCCA+AGG - chr6_3:151205-151224 None:intergenic 40.0%
CCTTGGAGCTTACTATATTG+TGG + chr6_3:151202-151221 Msa0932150:CDS 40.0%
CATGTGATTGATTGCATTGC+AGG + chr6_3:151460-151479 Msa0932150:intron 40.0%
ATTGCAGGCAACAAAAGCAA+GGG + chr6_3:151475-151494 Msa0932150:intron 40.0%
AACTAACAACACATTGGTGG+TGG + chr6_3:151523-151542 Msa0932150:three_prime_UTR 40.0%
! CTCTAGAGAGATGAGTAAGG+AGG + chr6_3:148217-148236 Msa0932150:CDS 45.0%
TAGAGAGATGAGTAAGGAGG+TGG + chr6_3:148220-148239 Msa0932150:CDS 45.0%
AGTGATGACCATGGAAGTGA+TGG + chr6_3:148263-148282 Msa0932150:CDS 45.0%
CAACTCTTCCATCACTTCCA+TGG - chr6_3:148274-148293 None:intergenic 45.0%
!! CTTATGATGGTGGGACATCT+TGG + chr6_3:148395-148414 Msa0932150:CDS 45.0%
GTAGGATCTTGTCACACAAC+AGG - chr6_3:149116-149135 None:intergenic 45.0%
GTTTGCATTGCAGTTGGGAA+TGG + chr6_3:149502-149521 Msa0932150:intron 45.0%
! GCAGAGGAGTATGGAAAACT+TGG + chr6_3:149563-149582 Msa0932150:CDS 45.0%
GAGCTACATGAGACATTCCA+GGG - chr6_3:149691-149710 None:intergenic 45.0%
TACCTCATTCCCGCTCTATT+TGG + chr6_3:149725-149744 Msa0932150:CDS 45.0%
AGTGCATAGCCAAATAGAGC+GGG - chr6_3:149737-149756 None:intergenic 45.0%
! GATTCGCTATTTCCAGACTC+AGG + chr6_3:149769-149788 Msa0932150:CDS 45.0%
GAAAGATCATTCCCTGAGTC+TGG - chr6_3:149784-149803 None:intergenic 45.0%
TCAGGGAATGATCTTTCCCA+TGG + chr6_3:149787-149806 Msa0932150:CDS 45.0%
!! AGAACCGAGGTTTCAAGTTG+AGG - chr6_3:150196-150215 None:intergenic 45.0%
AAACCTCGGTTCTTTCTGTC+TGG + chr6_3:150203-150222 Msa0932150:CDS 45.0%
GCAGAAGCTCCAATTGCATA+TGG - chr6_3:150355-150374 None:intergenic 45.0%
ATGCAATTGGAGCTTCTGCA+AGG + chr6_3:150356-150375 Msa0932150:CDS 45.0%
ATTGGAGCTTCTGCAAGGTT+TGG + chr6_3:150361-150380 Msa0932150:intron 45.0%
! AGCTTCTGCAAGGTTTGGTT+TGG + chr6_3:150366-150385 Msa0932150:intron 45.0%
TTAGGGATGTCAGTGACTGT+TGG + chr6_3:151002-151021 Msa0932150:intron 45.0%
AAATGCGAAGGGATTGTGGA+TGG + chr6_3:151265-151284 Msa0932150:CDS 45.0%
AATGCGAAGGGATTGTGGAT+GGG + chr6_3:151266-151285 Msa0932150:CDS 45.0%
TTGTGGATGGGAACTCTATC+AGG + chr6_3:151278-151297 Msa0932150:CDS 45.0%
CATTGCAGGCAACAAAAGCA+AGG + chr6_3:151474-151493 Msa0932150:intron 45.0%
GAGTTTCATGGCAGCTCCAA+TGG + chr6_3:148331-148350 Msa0932150:CDS 50.0%
! TGGACAAACCTTTGGTGCAG+AGG + chr6_3:149547-149566 Msa0932150:CDS 50.0%
! ACCTTTGGTGCAGAGGAGTA+TGG + chr6_3:149554-149573 Msa0932150:CDS 50.0%
TCCATACTCCTCTGCACCAA+AGG - chr6_3:149558-149577 None:intergenic 50.0%
CGAGCTACATGAGACATTCC+AGG - chr6_3:149692-149711 None:intergenic 50.0%
AGCCAAATAGAGCGGGAATG+AGG - chr6_3:149730-149749 None:intergenic 50.0%
TCACCAGACAGAAAGAACCG+AGG - chr6_3:150209-150228 None:intergenic 50.0%
ACAGCTCCCTTAGCTGTCTT+TGG - chr6_3:150522-150541 None:intergenic 50.0%
AGCTAAGGGAGCTGTTAGAG+TGG + chr6_3:150527-150546 Msa0932150:CDS 50.0%
ATGGGGGCTTATGTGAACCT+TGG + chr6_3:151185-151204 Msa0932150:CDS 50.0%
AGGCAACAAAAGCAAGGGAG+AGG + chr6_3:151480-151499 Msa0932150:intron 50.0%
GCATTGCAGTTGGGAATGGC+TGG + chr6_3:149506-149525 Msa0932150:intron 55.0%
TGAACTGCAGGGGTTGCTAG+AGG + chr6_3:151146-151165 Msa0932150:intron 55.0%
ACTGCAGGGGTTGCTAGAGG+AGG + chr6_3:151149-151168 Msa0932150:intron 60.0%
GCAGGGGTTGCTAGAGGAGG+TGG + chr6_3:151152-151171 Msa0932150:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 148192 151795 148192 ID=Msa0932150;Name=Msa0932150
chr6_3 mRNA 148192 151795 148192 ID=Msa0932150-mRNA-1;Parent=Msa0932150;Name=Msa0932150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=17|1|1|1|0.83|0.85|7|340|461
chr6_3 exon 148192 148487 148192 ID=Msa0932150-mRNA-1:exon:55;Parent=Msa0932150-mRNA-1
chr6_3 exon 149515 150059 149515 ID=Msa0932150-mRNA-1:exon:56;Parent=Msa0932150-mRNA-1
chr6_3 exon 150138 150224 150138 ID=Msa0932150-mRNA-1:exon:57;Parent=Msa0932150-mRNA-1
chr6_3 exon 150321 150377 150321 ID=Msa0932150-mRNA-1:exon:58;Parent=Msa0932150-mRNA-1
chr6_3 exon 150485 150723 150485 ID=Msa0932150-mRNA-1:exon:59;Parent=Msa0932150-mRNA-1
chr6_3 exon 151156 151360 151156 ID=Msa0932150-mRNA-1:exon:60;Parent=Msa0932150-mRNA-1
chr6_3 exon 151482 151795 151482 ID=Msa0932150-mRNA-1:exon:61;Parent=Msa0932150-mRNA-1
chr6_3 five_prime_UTR 148192 148208 148192 ID=Msa0932150-mRNA-1:five_prime_utr;Parent=Msa0932150-mRNA-1
chr6_3 CDS 148209 148487 148209 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 CDS 149515 150059 149515 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 CDS 150138 150224 150138 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 CDS 150321 150377 150321 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 CDS 150485 150723 150485 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 CDS 151156 151334 151156 ID=Msa0932150-mRNA-1:cds;Parent=Msa0932150-mRNA-1
chr6_3 three_prime_UTR 151335 151360 151335 ID=Msa0932150-mRNA-1:three_prime_utr;Parent=Msa0932150-mRNA-1
chr6_3 three_prime_UTR 151482 151795 151482 ID=Msa0932150-mRNA-1:three_prime_utr;Parent=Msa0932150-mRNA-1
Gene Sequence

>Msa0932150

ATGAAAAACTCTAGAGAGATGAGTAAGGAGGTGGCAACACCATTGCTAAGAAAGAGTGATGACCATGGAAGTGATGGAAGAGTTGAGATTGAGAATACATTCATTCAAGAGTTGAAGAAGGTGAGTTTCATGGCAGCTCCAATGGTAGCTGTAACAGTTTCACAATATCTTCTTCAAGTGGTTTCTCTTATGATGGTGGGACATCTTGGTATACTTGTTTCATTCTCTGGTGTTTCCATTGCCATGTCTTTTGCTGAAGTTACTGGCTTTAGTGTCCTTTTGGGAATGGCTGGAGCATTAGAAACACTATGTGGACAAACCTTTGGTGCAGAGGAGTATGGAAAACTTGGAAACTACACTTGCTGTGCAATATTAACTCTAACTGTAGTTTGTTTCCCAATATCTCTTGTGTGGATATTCACAGATAAAATACTACTGTTTTTTAGTCAAGACCCTGGAATGTCTCATGTAGCTCGCGAGTACTGCATATACCTCATTCCCGCTCTATTTGGCTATGCACTTCTTCAAGCGTTGATTCGCTATTTCCAGACTCAGGGAATGATCTTTCCCATGGTTTTTAGCTCAGTATCTGCTCTATTTTTGCACATTCCTATTTGTTGGATTCTGGTTTTTAAGTTGGGATTAGGACACATTGGAGCTGCTTTAGCTATTGGAATTTCTTATTGGTTGAATGTGATATGGCTTTGGGTTTATATTAAGTACTCTCCATCATGTCAAAAAACCAAGATTGTGTTTTCTACTCATGCTTTACATAACCTACCAGAGTTCTGCAAATATGCTATTCCTTCTGGACTCATGTTTTGTTTTGAATGGTGGTCCTTTGAGATTCTTATTTTAATTGCCGGGCTTTTACCTAATCCTCAACTTGAAACCTCGGTTCTTTCTGTCTGCTTGAACACTACCTCATTGCACTTCTTCATTCCATATGCAATTGGAGCTTCTGCAAGTACTCGTGTTTCAAATGAATTAGGAGCAGGAAATCCAAAGACAGCTAAGGGAGCTGTTAGAGTGGTTGTGATTATTGGAATTGCTGAGGCAATTATTGTCAGCACTTTCTTCCTTTGCTTTAGAAATATTTTAGGATATGCTTATAGCAATGATGAACAAGTTGTGAATTACATTGCGGATATGGTTCCTCTTCTTTGTGTTTCTGTTAGTGCTGATAGTCTAATTGGAGCTCTTTCAGGGGTTGCTAGAGGAGGTGGATTTCAAGAAATGGGGGCTTATGTGAACCTTGGAGCTTACTATATTGTGGGAATTCCTATTGGTTTGTTATTAGGTTTTCATCTAAAATTAAATGCGAAGGGATTGTGGATGGGAACTCTATCAGGATCTGTTTTAATGTCATTATACTATCTATTGTAA

Protein sequence

>Msa0932150

MKNSREMSKEVATPLLRKSDDHGSDGRVEIENTFIQELKKVSFMAAPMVAVTVSQYLLQVVSLMMVGHLGILVSFSGVSIAMSFAEVTGFSVLLGMAGALETLCGQTFGAEEYGKLGNYTCCAILTLTVVCFPISLVWIFTDKILLFFSQDPGMSHVAREYCIYLIPALFGYALLQALIRYFQTQGMIFPMVFSSVSALFLHIPICWILVFKLGLGHIGAALAIGISYWLNVIWLWVYIKYSPSCQKTKIVFSTHALHNLPEFCKYAIPSGLMFCFEWWSFEILILIAGLLPNPQLETSVLSVCLNTTSLHFFIPYAIGASASTRVSNELGAGNPKTAKGAVRVVVIIGIAEAIIVSTFFLCFRNILGYAYSNDEQVVNYIADMVPLLCVSVSADSLIGALSGVARGGGFQEMGAYVNLGAYYIVGIPIGLLLGFHLKLNAKGLWMGTLSGSVLMSLYYLL*