Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022400 | sp|P46665|HAT14_ARATH | 51.090 | 321 | 86 | 7 | 1 | 266 | 1 | 305 | 5.70e-86 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0022400 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022400 | Msa0057840 | 0.819043 | 1.428693e-52 | -8.615850e-47 |
| Msa0022400 | Msa0077340 | 0.806398 | 8.388947e-50 | -8.615850e-47 |
| Msa0022400 | Msa0118150 | 0.880765 | 4.190502e-70 | -8.615850e-47 |
| Msa0022400 | Msa0165640 | 0.801321 | 9.514170e-49 | -8.615850e-47 |
| Msa0022400 | Msa0195230 | 0.839926 | 1.183198e-57 | -8.615850e-47 |
| Msa0022400 | Msa0195260 | 0.834991 | 2.175837e-56 | -8.615850e-47 |
| Msa0022400 | Msa0354840 | 0.801309 | 9.568979e-49 | -8.615850e-47 |
| Msa0022400 | Msa0437440 | -0.801990 | 6.937415e-49 | -8.615850e-47 |
| Msa0022400 | Msa0579080 | 0.829709 | 4.424082e-55 | -8.615850e-47 |
| Msa0022400 | Msa0579160 | 0.836426 | 9.425543e-57 | -8.615850e-47 |
| Msa0022400 | Msa0579220 | 0.841470 | 4.659602e-58 | -8.615850e-47 |
| Msa0022400 | Msa0610690 | 0.837328 | 5.545932e-57 | -8.615850e-47 |
| Msa0022400 | Msa0719270 | 0.803314 | 3.698326e-49 | -8.615850e-47 |
| Msa0022400 | Msa0746650 | 0.806194 | 9.257791e-50 | -8.615850e-47 |
| Msa0022400 | Msa0795750 | 0.805764 | 1.140327e-49 | -8.615850e-47 |
| Msa0022400 | Msa0851850 | 0.813183 | 2.911442e-51 | -8.615850e-47 |
| Msa0022400 | Msa0865420 | 0.802342 | 5.871661e-49 | -8.615850e-47 |
| Msa0022400 | Msa0930770 | 0.811461 | 6.921260e-51 | -8.615850e-47 |
| Msa0022400 | Msa0982730 | 0.803079 | 4.137049e-49 | -8.615850e-47 |
| Msa0022400 | Msa1022420 | 0.844105 | 9.289681e-59 | -8.615850e-47 |
| Msa0022400 | Msa1194240 | 0.806814 | 6.852948e-50 | -8.615850e-47 |
| Msa0022400 | Msa1197720 | 0.801494 | 8.768638e-49 | -8.615850e-47 |
| Msa0022400 | Msa1327800 | 0.801167 | 1.023082e-48 | -8.615850e-47 |
| Msa0022400 | Msa1352580 | 0.800584 | 1.345752e-48 | -8.615850e-47 |
| Msa0022400 | Msa1396200 | -0.809265 | 2.061283e-50 | -8.615850e-47 |
| Msa0022400 | Msa1422860 | 0.823429 | 1.391892e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022400 | MtrunA17_Chr1g0175651 | 94.408 | 304 | 6 | 5 | 1 | 301 | 1 | 296 | 0.0 | 565 |
| Msa0022400 | MtrunA17_Chr7g0258831 | 68.727 | 275 | 73 | 8 | 1 | 264 | 1 | 273 | 5.72e-118 | 341 |
| Msa0022400 | MtrunA17_Chr2g0308611 | 51.775 | 338 | 90 | 10 | 1 | 277 | 1 | 326 | 1.22e-81 | 250 |
| Msa0022400 | MtrunA17_Chr4g0055851 | 59.535 | 215 | 65 | 5 | 81 | 290 | 57 | 254 | 1.65e-74 | 229 |
| Msa0022400 | MtrunA17_Chr5g0399491 | 62.887 | 194 | 50 | 5 | 81 | 265 | 71 | 251 | 2.44e-71 | 222 |
| Msa0022400 | MtrunA17_Chr4g0054421 | 79.070 | 129 | 25 | 1 | 137 | 263 | 111 | 239 | 1.03e-68 | 214 |
| Msa0022400 | MtrunA17_Chr8g0335131 | 62.162 | 185 | 39 | 4 | 97 | 262 | 86 | 258 | 5.72e-64 | 203 |
| Msa0022400 | MtrunA17_Chr5g0400781 | 75.000 | 124 | 30 | 1 | 142 | 264 | 113 | 236 | 3.10e-62 | 198 |
| Msa0022400 | MtrunA17_Chr1g0151971 | 51.500 | 200 | 75 | 6 | 79 | 264 | 54 | 245 | 9.82e-55 | 179 |
| Msa0022400 | MtrunA17_Chr4g0044091 | 65.323 | 124 | 36 | 2 | 146 | 262 | 59 | 182 | 5.70e-47 | 156 |
| Msa0022400 | MtrunA17_Chr3g0135331 | 67.742 | 124 | 39 | 1 | 142 | 265 | 136 | 258 | 1.07e-45 | 156 |
| Msa0022400 | MtrunA17_Chr2g0299031 | 56.296 | 135 | 49 | 3 | 134 | 263 | 66 | 195 | 3.25e-39 | 137 |
| Msa0022400 | MtrunA17_Chr4g0071411 | 57.018 | 114 | 45 | 1 | 153 | 262 | 90 | 203 | 2.03e-34 | 124 |
| Msa0022400 | MtrunA17_Chr7g0217111 | 37.647 | 170 | 97 | 3 | 110 | 275 | 40 | 204 | 7.80e-22 | 92.8 |
| Msa0022400 | MtrunA17_Chr4g0060031 | 46.667 | 120 | 60 | 2 | 119 | 238 | 67 | 182 | 1.23e-19 | 87.8 |
| Msa0022400 | MtrunA17_Chr5g0416391 | 46.875 | 96 | 51 | 0 | 143 | 238 | 69 | 164 | 2.10e-18 | 83.2 |
| Msa0022400 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 62 | 1 | 134 | 244 | 60 | 174 | 3.58e-18 | 82.8 |
| Msa0022400 | MtrunA17_Chr3g0123691 | 34.973 | 183 | 108 | 4 | 101 | 273 | 10 | 191 | 6.74e-18 | 82.4 |
| Msa0022400 | MtrunA17_Chr7g0265521 | 42.105 | 95 | 55 | 0 | 144 | 238 | 56 | 150 | 7.95e-18 | 80.9 |
| Msa0022400 | MtrunA17_Chr6g0450991 | 41.228 | 114 | 67 | 0 | 151 | 264 | 67 | 180 | 9.33e-18 | 81.6 |
| Msa0022400 | MtrunA17_Chr1g0179581 | 44.828 | 87 | 48 | 0 | 147 | 233 | 24 | 110 | 2.06e-17 | 76.6 |
| Msa0022400 | MtrunA17_Chr8g0381741 | 43.200 | 125 | 61 | 2 | 121 | 238 | 27 | 148 | 3.44e-17 | 80.5 |
| Msa0022400 | MtrunA17_Chr6g0453021 | 40.136 | 147 | 74 | 4 | 104 | 237 | 44 | 189 | 4.47e-17 | 79.7 |
| Msa0022400 | MtrunA17_Chr3g0119291 | 46.226 | 106 | 48 | 2 | 142 | 238 | 48 | 153 | 5.07e-17 | 79.0 |
| Msa0022400 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 151 | 237 | 87 | 180 | 1.69e-16 | 78.6 |
| Msa0022400 | MtrunA17_Chr8g0362751 | 44.681 | 94 | 45 | 1 | 151 | 237 | 89 | 182 | 2.25e-15 | 74.7 |
| Msa0022400 | MtrunA17_Chr5g0403691 | 40.741 | 108 | 60 | 1 | 128 | 235 | 34 | 137 | 2.16e-11 | 62.4 |
| Msa0022400 | MtrunA17_Chr8g0346251 | 44.595 | 74 | 41 | 0 | 163 | 236 | 53 | 126 | 4.36e-11 | 62.0 |
| Msa0022400 | MtrunA17_Chr3g0127511 | 40.625 | 96 | 50 | 1 | 154 | 242 | 41 | 136 | 4.43e-11 | 62.0 |
| Msa0022400 | MtrunA17_Chr5g0403701 | 40.000 | 110 | 62 | 1 | 128 | 237 | 34 | 139 | 4.47e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022400 | AT5G06710.1 | 51.090 | 321 | 86 | 7 | 1 | 266 | 1 | 305 | 5.79e-87 | 264 |
| Msa0022400 | AT5G47370.1 | 52.273 | 264 | 104 | 11 | 48 | 296 | 22 | 278 | 9.06e-71 | 221 |
| Msa0022400 | AT3G60390.1 | 59.901 | 202 | 58 | 7 | 81 | 262 | 76 | 274 | 2.28e-67 | 213 |
| Msa0022400 | AT4G16780.1 | 59.813 | 214 | 68 | 6 | 81 | 289 | 68 | 268 | 2.46e-66 | 209 |
| Msa0022400 | AT4G37790.1 | 79.508 | 122 | 25 | 0 | 142 | 263 | 117 | 238 | 5.61e-66 | 208 |
| Msa0022400 | AT4G17460.1 | 49.811 | 265 | 84 | 10 | 48 | 282 | 21 | 266 | 8.38e-65 | 205 |
| Msa0022400 | AT2G44910.1 | 48.302 | 265 | 85 | 8 | 46 | 265 | 21 | 278 | 8.54e-65 | 206 |
| Msa0022400 | AT2G22800.1 | 77.049 | 122 | 28 | 0 | 142 | 263 | 104 | 225 | 1.09e-63 | 202 |
| Msa0022400 | AT2G01430.1 | 47.826 | 184 | 76 | 5 | 89 | 263 | 77 | 249 | 1.31e-44 | 153 |
| Msa0022400 | AT1G70920.1 | 59.124 | 137 | 42 | 4 | 141 | 273 | 57 | 183 | 4.01e-41 | 142 |
| Msa0022400 | AT1G70920.2 | 59.124 | 137 | 42 | 4 | 141 | 273 | 27 | 153 | 4.18e-41 | 141 |
| Msa0022400 | AT5G06710.4 | 41.634 | 257 | 79 | 7 | 1 | 202 | 1 | 241 | 2.94e-40 | 142 |
| Msa0022400 | AT2G01430.2 | 42.623 | 122 | 52 | 3 | 90 | 202 | 78 | 190 | 1.71e-20 | 88.2 |
| Msa0022400 | AT5G06710.2 | 36.052 | 233 | 72 | 9 | 1 | 175 | 1 | 214 | 4.21e-20 | 87.4 |
| Msa0022400 | AT5G06710.3 | 36.052 | 233 | 72 | 9 | 1 | 175 | 1 | 214 | 4.21e-20 | 87.4 |
| Msa0022400 | AT1G69780.1 | 44.340 | 106 | 59 | 0 | 133 | 238 | 67 | 172 | 3.30e-18 | 83.6 |
| Msa0022400 | AT1G26960.1 | 44.860 | 107 | 55 | 1 | 143 | 245 | 63 | 169 | 8.14e-18 | 81.6 |
| Msa0022400 | AT5G03790.1 | 39.130 | 115 | 69 | 1 | 144 | 257 | 70 | 184 | 1.91e-17 | 80.1 |
| Msa0022400 | AT2G36610.1 | 41.176 | 102 | 52 | 1 | 146 | 239 | 66 | 167 | 1.86e-16 | 76.3 |
| Msa0022400 | AT5G15150.1 | 43.590 | 117 | 61 | 3 | 129 | 240 | 92 | 208 | 7.17e-16 | 77.0 |
| Msa0022400 | AT3G01220.1 | 44.330 | 97 | 50 | 1 | 151 | 243 | 87 | 183 | 3.14e-15 | 74.7 |
| Msa0022400 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 147 | 241 | 58 | 156 | 4.00e-15 | 74.7 |
| Msa0022400 | AT3G01470.1 | 44.565 | 92 | 51 | 0 | 151 | 242 | 68 | 159 | 4.22e-15 | 74.3 |
| Msa0022400 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 151 | 216 | 17 | 82 | 1.79e-14 | 70.5 |
| Msa0022400 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 151 | 216 | 25 | 90 | 1.88e-14 | 70.9 |
| Msa0022400 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 151 | 216 | 25 | 90 | 1.88e-14 | 70.9 |
| Msa0022400 | AT4G40060.1 | 43.878 | 98 | 51 | 1 | 147 | 240 | 55 | 152 | 2.60e-14 | 72.4 |
| Msa0022400 | AT1G27045.1 | 57.576 | 66 | 28 | 0 | 151 | 216 | 68 | 133 | 2.67e-14 | 71.2 |
| Msa0022400 | AT5G65310.1 | 41.837 | 98 | 50 | 1 | 148 | 238 | 69 | 166 | 3.47e-14 | 72.0 |
| Msa0022400 | AT5G65310.2 | 41.837 | 98 | 50 | 1 | 148 | 238 | 51 | 148 | 3.68e-14 | 72.0 |
| Msa0022400 | AT1G27045.4 | 57.576 | 66 | 28 | 0 | 151 | 216 | 68 | 133 | 4.23e-14 | 71.2 |
| Msa0022400 | AT5G03790.2 | 35.772 | 123 | 71 | 2 | 144 | 258 | 70 | 192 | 4.94e-14 | 69.7 |
| Msa0022400 | AT2G18550.1 | 44.554 | 101 | 54 | 2 | 137 | 237 | 49 | 147 | 1.31e-13 | 69.3 |
| Msa0022400 | AT2G46680.2 | 40.659 | 91 | 54 | 0 | 146 | 236 | 27 | 117 | 6.04e-13 | 67.8 |
| Msa0022400 | AT2G46680.1 | 40.659 | 91 | 54 | 0 | 146 | 236 | 27 | 117 | 6.30e-13 | 67.8 |
| Msa0022400 | AT4G36740.1 | 41.237 | 97 | 56 | 1 | 141 | 237 | 46 | 141 | 4.13e-12 | 64.7 |
| Msa0022400 | AT4G36740.2 | 41.237 | 97 | 56 | 1 | 141 | 237 | 47 | 142 | 4.15e-12 | 64.7 |
| Msa0022400 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 154 | 236 | 33 | 115 | 7.50e-11 | 61.6 |
Find 90 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTGAGCCTGATGGGCT+TGG | 0.185004 | 1_1:-41977815 | None:intergenic |
| GGCTTGAGCCTGATGGGCTT+GGG | 0.249675 | 1_1:-41977814 | None:intergenic |
| CTACCAACAACTTCATAAAA+TGG | 0.263744 | 1_1:+41975927 | Msa0022400:exon |
| AGAAAAGAGATAGGTAATTT+TGG | 0.264059 | 1_1:-41975976 | None:intergenic |
| AGGAATAACAATGCTGAATA+TGG | 0.265099 | 1_1:+41976676 | Msa0022400:CDS |
| TGAAATGAAGAAGGGAATAA+TGG | 0.282805 | 1_1:-41975846 | None:intergenic |
| GGAAGTGATGATGATGAAAA+TGG | 0.308043 | 1_1:+41976739 | Msa0022400:CDS |
| CTTCTCACCTCCCCATTCCT+TGG | 0.329294 | 1_1:+41976142 | Msa0022400:CDS |
| GGCTTGGGCTTGAGCCTGAT+GGG | 0.342578 | 1_1:-41977820 | None:intergenic |
| GGGCTTGGGCTTGAGCCTGA+TGG | 0.356666 | 1_1:-41977821 | None:intergenic |
| TTGACTTGTTGGTGTTTGTT+TGG | 0.360920 | 1_1:-41977764 | None:intergenic |
| TGTGATGTTTGAAAGGGTTT+GGG | 0.363942 | 1_1:-41975814 | None:intergenic |
| ATGGAACTTGCTTTGAGCTT+AGG | 0.368374 | 1_1:+41975946 | Msa0022400:CDS |
| GAAACTTGGTGGTGGATCTT+TGG | 0.372348 | 1_1:-41976010 | None:intergenic |
| GATGGTACTATAAGATTATA+AGG | 0.373420 | 1_1:-41977861 | None:intergenic |
| GAAATGAAGAAGGGAATAAT+GGG | 0.391250 | 1_1:-41975845 | None:intergenic |
| GGAAGAAGGTCTAGTTGAAT+AGG | 0.392211 | 1_1:-41976087 | None:intergenic |
| GTCCTCGTCAAGTTGAAGTT+TGG | 0.396562 | 1_1:+41976979 | Msa0022400:CDS |
| TTGTGATGTTTGAAAGGGTT+TGG | 0.398781 | 1_1:-41975815 | None:intergenic |
| TGCTCAAGCCCAAGCCCATC+AGG | 0.400227 | 1_1:+41977806 | Msa0022400:CDS |
| CTTGGTGGTGGATCTTTGGT+GGG | 0.419151 | 1_1:-41976006 | None:intergenic |
| ATGAAGGAATCTGATGGGCT+TGG | 0.420734 | 1_1:-41977836 | None:intergenic |
| GGTTGGGTGAGCCAAGGAAT+GGG | 0.421883 | 1_1:-41976153 | None:intergenic |
| CTTCGGTCGTCGCCGGAAAA+CGG | 0.438226 | 1_1:-41976582 | None:intergenic |
| TGGCAGTATTCTTGACTTGT+TGG | 0.444669 | 1_1:-41977775 | None:intergenic |
| TAGATAGAAAATTACATGGT+TGG | 0.446528 | 1_1:-41976170 | None:intergenic |
| TGAAGGAATCTGATGGGCTT+GGG | 0.452845 | 1_1:-41977835 | None:intergenic |
| ACTTGGTGGTGGATCTTTGG+TGG | 0.456684 | 1_1:-41976007 | None:intergenic |
| TTGCAATGGATTTCAGTATG+AGG | 0.457926 | 1_1:+41976656 | Msa0022400:CDS |
| GTGTTTGTTTGGTTGTTGCA+AGG | 0.458788 | 1_1:-41977753 | None:intergenic |
| AGATAGAAAATTACATGGTT+GGG | 0.461778 | 1_1:-41976169 | None:intergenic |
| CTCAAAATGATTAGAATGAA+AGG | 0.463140 | 1_1:-41978030 | None:intergenic |
| TTATATTTGTGATGTTTGAA+AGG | 0.471630 | 1_1:-41975821 | None:intergenic |
| AGTGCAAATTGAAATGAAGA+AGG | 0.476272 | 1_1:-41975855 | None:intergenic |
| GGTGCCGTCGTCGACGTCTT+CGG | 0.477232 | 1_1:-41976599 | None:intergenic |
| TTCTGTGTCACCATTTGCAA+TGG | 0.477662 | 1_1:+41976642 | Msa0022400:CDS |
| CACATAGTGAGAGTGGTAGC+TGG | 0.479169 | 1_1:-41977702 | None:intergenic |
| GGGTGAGGAGATCTAAGAAC+AGG | 0.479275 | 1_1:-41976117 | None:intergenic |
| GGAATGGGGAGGTGAGAAGA+AGG | 0.480630 | 1_1:-41976138 | None:intergenic |
| TATATTTGTGATGTTTGAAA+GGG | 0.482388 | 1_1:-41975820 | None:intergenic |
| TGTTTGTTTGGTTGTTGCAA+GGG | 0.493080 | 1_1:-41977752 | None:intergenic |
| ATACTGAAATCCATTGCAAA+TGG | 0.496930 | 1_1:-41976652 | None:intergenic |
| GATCTAAGAACAGGAGAGAA+AGG | 0.503681 | 1_1:-41976108 | None:intergenic |
| TGGTTGGGTGAGCCAAGGAA+TGG | 0.507151 | 1_1:-41976154 | None:intergenic |
| TCGACGTCTTCGGTCGTCGC+CGG | 0.507773 | 1_1:-41976589 | None:intergenic |
| AGAAACAAGAGAGAAAATGA+AGG | 0.510237 | 1_1:+41976703 | Msa0022400:CDS |
| ATCATCAGGTGGACCGGTGA+GGG | 0.515305 | 1_1:+41976546 | Msa0022400:intron |
| AATGAAGGTGAAGCTGAAAG+AGG | 0.521199 | 1_1:+41976718 | Msa0022400:CDS |
| TTTGTTATCATCAGGTGGAC+CGG | 0.521239 | 1_1:+41976540 | Msa0022400:intron |
| GAATGGGGAGGTGAGAAGAA+GGG | 0.522886 | 1_1:-41976137 | None:intergenic |
| TGGGCTTGAGCATTAGAGAA+TGG | 0.523806 | 1_1:-41977795 | None:intergenic |
| GAAGTGATGATGATGAAAAT+GGG | 0.525282 | 1_1:+41976740 | Msa0022400:CDS |
| GGGAGGTGAGAAGAAGGGTG+AGG | 0.527359 | 1_1:-41976132 | None:intergenic |
| AAATGGTGACACAGAACTGC+TGG | 0.531470 | 1_1:-41976635 | None:intergenic |
| GTTGCTACACGTTCACAAGA+AGG | 0.535467 | 1_1:-41977726 | None:intergenic |
| GTGCAAATTGAAATGAAGAA+GGG | 0.535541 | 1_1:-41975854 | None:intergenic |
| TATGATAGATAATATCATAG+AGG | 0.549542 | 1_1:+41977927 | Msa0022400:three_prime_UTR |
| TGTTGGGTTGAGAAGAAACT+TGG | 0.550395 | 1_1:-41976024 | None:intergenic |
| ATGATGAAAATGGGTCAACT+AGG | 0.551419 | 1_1:+41976749 | Msa0022400:CDS |
| GGTTTGTCAAGAAAAGAGAT+AGG | 0.551628 | 1_1:-41975985 | None:intergenic |
| GAACAGGAGAGAAAGGAAGA+AGG | 0.553836 | 1_1:-41976101 | None:intergenic |
| TGGGTTGAGAAGAAACTTGG+TGG | 0.558087 | 1_1:-41976021 | None:intergenic |
| AAGGTCATGAAGGAATCTGA+TGG | 0.569756 | 1_1:-41977842 | None:intergenic |
| ATGATAGATAATATCATAGA+GGG | 0.574506 | 1_1:+41977928 | Msa0022400:three_prime_UTR |
| GAAATTTACAGGATTAAGAG+TGG | 0.579010 | 1_1:-41976833 | None:intergenic |
| AAAGCTAAAGCAAACAGAAG+TGG | 0.588208 | 1_1:+41977563 | Msa0022400:CDS |
| GCTGGAAGTTGCATGTAGAA+TGG | 0.591856 | 1_1:-41977684 | None:intergenic |
| ATAAGATTATAAGGTCATGA+AGG | 0.594650 | 1_1:-41977852 | None:intergenic |
| AGAAGGTCTAGTTGAATAGG+TGG | 0.598462 | 1_1:-41976084 | None:intergenic |
| AGAAGGACACATAGTGAGAG+TGG | 0.600200 | 1_1:-41977709 | None:intergenic |
| GATGTTTGAAAGGGTTTGGG+AGG | 0.603362 | 1_1:-41975811 | None:intergenic |
| GGTTTCAAAATAGAAGAGCA+AGG | 0.607323 | 1_1:+41977000 | Msa0022400:CDS |
| AATGGTGACACAGAACTGCT+GGG | 0.607777 | 1_1:-41976634 | None:intergenic |
| AGTTTCTTCTCAACCCAACA+AGG | 0.609680 | 1_1:+41976027 | Msa0022400:CDS |
| TTACATGGTTGGGTGAGCCA+AGG | 0.611815 | 1_1:-41976159 | None:intergenic |
| GTTGAGAAGAAACTTGGTGG+TGG | 0.612151 | 1_1:-41976018 | None:intergenic |
| TTCACGTCTAGCTCCCTCAC+CGG | 0.612339 | 1_1:-41976559 | None:intergenic |
| AGGTCATGAAGGAATCTGAT+GGG | 0.612514 | 1_1:-41977841 | None:intergenic |
| AATAACAATGCTGAATATGG+AGG | 0.617867 | 1_1:+41976679 | Msa0022400:CDS |
| AACCAAACTTCAACTTGACG+AGG | 0.618703 | 1_1:-41976981 | None:intergenic |
| GTTGGGTGAGCCAAGGAATG+GGG | 0.619312 | 1_1:-41976152 | None:intergenic |
| TATCATCAGGTGGACCGGTG+AGG | 0.627118 | 1_1:+41976545 | Msa0022400:intron |
| CATTCTTCCATGTCACACAA+AGG | 0.637486 | 1_1:-41978065 | None:intergenic |
| ACGACCGAAGACGTCGACGA+CGG | 0.639103 | 1_1:+41976595 | Msa0022400:CDS |
| ATGGTGACACAGAACTGCTG+GGG | 0.640069 | 1_1:-41976633 | None:intergenic |
| AAATCAAAATTATATACACA+CGG | 0.656876 | 1_1:-41977988 | None:intergenic |
| GGGTGAGCCAAGGAATGGGG+AGG | 0.690782 | 1_1:-41976149 | None:intergenic |
| ATATCATAGAGGGTGTGACA+AGG | 0.693551 | 1_1:+41977938 | Msa0022400:three_prime_UTR |
| AATCTTATAGTACCATCACA+TGG | 0.693563 | 1_1:+41977867 | Msa0022400:three_prime_UTR |
| TGGTGACACAGAACTGCTGG+GGG | 0.743324 | 1_1:-41976632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_1:41976847-41976866 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_1:41977036-41977055 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_1:41977044-41977063 | Msa0022400:intron | 10.0% |
| !!! | TAAAAGAAAGATATTTTTTA+GGG | - | chr1_1:41977087-41977106 | None:intergenic | 10.0% |
| !!! | ATAAAAGAAAGATATTTTTT+AGG | - | chr1_1:41977088-41977107 | None:intergenic | 10.0% |
| !! | AAAAATAAACAAAAAAATAC+TGG | - | chr1_1:41977369-41977388 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_1:41977520-41977539 | Msa0022400:intron | 10.0% |
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_1:41976847-41976866 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_1:41977036-41977055 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_1:41977044-41977063 | Msa0022400:intron | 10.0% |
| !!! | TAAAAGAAAGATATTTTTTA+GGG | - | chr1_1:41977087-41977106 | None:intergenic | 10.0% |
| !!! | ATAAAAGAAAGATATTTTTT+AGG | - | chr1_1:41977088-41977107 | None:intergenic | 10.0% |
| !! | AAAAATAAACAAAAAAATAC+TGG | - | chr1_1:41977369-41977388 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_1:41977520-41977539 | Msa0022400:intron | 10.0% |
| !! | AAATATATAAAACCATTTAG+AGG | - | chr1_1:41976214-41976233 | None:intergenic | 15.0% |
| !!! | TGAAATGTCAATTTTTTTAA+TGG | + | chr1_1:41976405-41976424 | Msa0022400:intron | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_1:41976879-41976898 | Msa0022400:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_1:41977248-41977267 | None:intergenic | 15.0% |
| !! | TATTAGATTTCTTTATCTTA+TGG | - | chr1_1:41977433-41977452 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_1:41977991-41978010 | None:intergenic | 15.0% |
| !! | AAATATATAAAACCATTTAG+AGG | - | chr1_1:41976214-41976233 | None:intergenic | 15.0% |
| !!! | TGAAATGTCAATTTTTTTAA+TGG | + | chr1_1:41976405-41976424 | Msa0022400:intron | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_1:41976879-41976898 | Msa0022400:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_1:41977248-41977267 | None:intergenic | 15.0% |
| !! | TATTAGATTTCTTTATCTTA+TGG | - | chr1_1:41977433-41977452 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_1:41977991-41978010 | None:intergenic | 15.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_1:41975823-41975842 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_1:41975824-41975843 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_1:41976177-41976196 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAATGGATCT+AGG | + | chr1_1:41976412-41976431 | Msa0022400:intron | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_1:41976532-41976551 | Msa0022400:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_1:41977146-41977165 | None:intergenic | 20.0% |
| !!! | TCTTATGGTTTTGTTTTTTT+TGG | - | chr1_1:41977418-41977437 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_1:41977458-41977477 | Msa0022400:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_1:41977486-41977505 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_1:41977927-41977946 | Msa0022400:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_1:41977928-41977947 | Msa0022400:three_prime_UTR | 20.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_1:41975823-41975842 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_1:41975824-41975843 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_1:41976177-41976196 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAATGGATCT+AGG | + | chr1_1:41976412-41976431 | Msa0022400:intron | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_1:41976532-41976551 | Msa0022400:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_1:41977146-41977165 | None:intergenic | 20.0% |
| !!! | TCTTATGGTTTTGTTTTTTT+TGG | - | chr1_1:41977418-41977437 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_1:41977458-41977477 | Msa0022400:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_1:41977486-41977505 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_1:41977927-41977946 | Msa0022400:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_1:41977928-41977947 | Msa0022400:three_prime_UTR | 20.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_1:41975979-41975998 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_1:41976172-41976191 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_1:41976173-41976192 | None:intergenic | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_1:41976307-41976326 | Msa0022400:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_1:41976308-41976327 | Msa0022400:intron | 25.0% |
| !!! | TTTTTGGTTACATGAGAAAA+AGG | - | chr1_1:41977402-41977421 | None:intergenic | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_1:41977538-41977557 | Msa0022400:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_1:41977855-41977874 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_1:41977864-41977883 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_1:41977882-41977901 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_1:41978033-41978052 | None:intergenic | 25.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_1:41975979-41975998 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_1:41976172-41976191 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_1:41976173-41976192 | None:intergenic | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_1:41976307-41976326 | Msa0022400:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_1:41976308-41976327 | Msa0022400:intron | 25.0% |
| !!! | TTTTTGGTTACATGAGAAAA+AGG | - | chr1_1:41977402-41977421 | None:intergenic | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_1:41977538-41977557 | Msa0022400:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_1:41977855-41977874 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_1:41977864-41977883 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_1:41977882-41977901 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_1:41978033-41978052 | None:intergenic | 25.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_1:41975848-41975867 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_1:41975849-41975868 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_1:41975857-41975876 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_1:41975858-41975877 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_1:41975927-41975946 | Msa0022400:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_1:41975933-41975952 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_1:41976051-41976070 | Msa0022400:CDS | 30.0% | |
| ! | ATCCTTTTCTTTCCTCTAAA+TGG | + | chr1_1:41976199-41976218 | Msa0022400:intron | 30.0% |
| AACCATTTAGAGGAAAGAAA+AGG | - | chr1_1:41976204-41976223 | None:intergenic | 30.0% | |
| AAAACCTTGTACCAAATCTT+GGG | - | chr1_1:41976346-41976365 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTTATCATCAGG+TGG | + | chr1_1:41976535-41976554 | Msa0022400:intron | 30.0% |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_1:41976655-41976674 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_1:41976676-41976695 | Msa0022400:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_1:41976679-41976698 | Msa0022400:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_1:41976703-41976722 | Msa0022400:CDS | 30.0% | |
| ! | GAAGTGATGATGATGAAAAT+GGG | + | chr1_1:41976740-41976759 | Msa0022400:CDS | 30.0% |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_1:41976836-41976855 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_1:41977153-41977172 | Msa0022400:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_1:41977867-41977886 | Msa0022400:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_1:41978058-41978077 | Msa0022400:three_prime_UTR | 30.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_1:41975848-41975867 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_1:41975849-41975868 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_1:41975857-41975876 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_1:41975858-41975877 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_1:41975927-41975946 | Msa0022400:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_1:41975933-41975952 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_1:41976051-41976070 | Msa0022400:CDS | 30.0% | |
| ! | ATCCTTTTCTTTCCTCTAAA+TGG | + | chr1_1:41976199-41976218 | Msa0022400:intron | 30.0% |
| AACCATTTAGAGGAAAGAAA+AGG | - | chr1_1:41976204-41976223 | None:intergenic | 30.0% | |
| AAAACCTTGTACCAAATCTT+GGG | - | chr1_1:41976346-41976365 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTTATCATCAGG+TGG | + | chr1_1:41976535-41976554 | Msa0022400:intron | 30.0% |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_1:41976655-41976674 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_1:41976676-41976695 | Msa0022400:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_1:41976679-41976698 | Msa0022400:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_1:41976703-41976722 | Msa0022400:CDS | 30.0% | |
| ! | GAAGTGATGATGATGAAAAT+GGG | + | chr1_1:41976740-41976759 | Msa0022400:CDS | 30.0% |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_1:41976836-41976855 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_1:41977153-41977172 | Msa0022400:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_1:41977867-41977886 | Msa0022400:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_1:41978058-41978077 | Msa0022400:three_prime_UTR | 30.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_1:41975817-41975836 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_1:41975818-41975837 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_1:41975988-41976007 | None:intergenic | 35.0% | |
| !!! | TTCTGAAGCTTTTCCTTGTT+GGG | - | chr1_1:41976043-41976062 | None:intergenic | 35.0% |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_1:41976332-41976351 | Msa0022400:intron | 35.0% | |
| CAAAACCTTGTACCAAATCT+TGG | - | chr1_1:41976347-41976366 | None:intergenic | 35.0% | |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_1:41976656-41976675 | Msa0022400:CDS | 35.0% |
| ! | GGAAGTGATGATGATGAAAA+TGG | + | chr1_1:41976739-41976758 | Msa0022400:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_1:41976749-41976768 | Msa0022400:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_1:41977000-41977019 | Msa0022400:CDS | 35.0% | |
| TGTAAGCAATAAACGAAGCT+CGG | - | chr1_1:41977314-41977333 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_1:41977324-41977343 | Msa0022400:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_1:41977325-41977344 | Msa0022400:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_1:41977563-41977582 | Msa0022400:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_1:41977755-41977774 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_1:41977767-41977786 | None:intergenic | 35.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_1:41975817-41975836 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_1:41975818-41975837 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_1:41975988-41976007 | None:intergenic | 35.0% | |
| !!! | TTCTGAAGCTTTTCCTTGTT+GGG | - | chr1_1:41976043-41976062 | None:intergenic | 35.0% |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_1:41976332-41976351 | Msa0022400:intron | 35.0% | |
| CAAAACCTTGTACCAAATCT+TGG | - | chr1_1:41976347-41976366 | None:intergenic | 35.0% | |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_1:41976656-41976675 | Msa0022400:CDS | 35.0% |
| ! | GGAAGTGATGATGATGAAAA+TGG | + | chr1_1:41976739-41976758 | Msa0022400:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_1:41976749-41976768 | Msa0022400:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_1:41977000-41977019 | Msa0022400:CDS | 35.0% | |
| TGTAAGCAATAAACGAAGCT+CGG | - | chr1_1:41977314-41977333 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_1:41977324-41977343 | Msa0022400:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_1:41977325-41977344 | Msa0022400:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_1:41977563-41977582 | Msa0022400:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_1:41977755-41977774 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_1:41977767-41977786 | None:intergenic | 35.0% |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_1:41975946-41975965 | Msa0022400:CDS | 40.0% |
| !! | TGTTGGGTTGAGAAGAAACT+TGG | - | chr1_1:41976027-41976046 | None:intergenic | 40.0% |
| AGTTTCTTCTCAACCCAACA+AGG | + | chr1_1:41976027-41976046 | Msa0022400:CDS | 40.0% | |
| !!! | CTTCTGAAGCTTTTCCTTGT+TGG | - | chr1_1:41976044-41976063 | None:intergenic | 40.0% |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_1:41976087-41976106 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_1:41976090-41976109 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_1:41976111-41976130 | None:intergenic | 40.0% | |
| ! | TTTGTTATCATCAGGTGGAC+CGG | + | chr1_1:41976540-41976559 | Msa0022400:intron | 40.0% |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_1:41976642-41976661 | Msa0022400:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_1:41976718-41976737 | Msa0022400:CDS | 40.0% | |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_1:41976938-41976957 | Msa0022400:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_1:41976984-41977003 | None:intergenic | 40.0% | |
| ! | AATAAACGAAGCTCGGTTTG+AGG | - | chr1_1:41977307-41977326 | None:intergenic | 40.0% |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_1:41977756-41977775 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_1:41977778-41977797 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_1:41977844-41977863 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_1:41977845-41977864 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_1:41977938-41977957 | Msa0022400:three_prime_UTR | 40.0% |
| CATTCTTCCATGTCACACAA+AGG | - | chr1_1:41978068-41978087 | None:intergenic | 40.0% | |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_1:41975946-41975965 | Msa0022400:CDS | 40.0% |
| !! | TGTTGGGTTGAGAAGAAACT+TGG | - | chr1_1:41976027-41976046 | None:intergenic | 40.0% |
| AGTTTCTTCTCAACCCAACA+AGG | + | chr1_1:41976027-41976046 | Msa0022400:CDS | 40.0% | |
| !!! | CTTCTGAAGCTTTTCCTTGT+TGG | - | chr1_1:41976044-41976063 | None:intergenic | 40.0% |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_1:41976087-41976106 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_1:41976090-41976109 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_1:41976111-41976130 | None:intergenic | 40.0% | |
| ! | TTTGTTATCATCAGGTGGAC+CGG | + | chr1_1:41976540-41976559 | Msa0022400:intron | 40.0% |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_1:41976642-41976661 | Msa0022400:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_1:41976718-41976737 | Msa0022400:CDS | 40.0% | |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_1:41976938-41976957 | Msa0022400:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_1:41976984-41977003 | None:intergenic | 40.0% | |
| ! | AATAAACGAAGCTCGGTTTG+AGG | - | chr1_1:41977307-41977326 | None:intergenic | 40.0% |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_1:41977756-41977775 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_1:41977778-41977797 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_1:41977844-41977863 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_1:41977845-41977864 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_1:41977938-41977957 | Msa0022400:three_prime_UTR | 40.0% |
| CATTCTTCCATGTCACACAA+AGG | - | chr1_1:41978068-41978087 | None:intergenic | 40.0% | |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_1:41975814-41975833 | None:intergenic | 45.0% | |
| !! | GAAACTTGGTGGTGGATCTT+TGG | - | chr1_1:41976013-41976032 | None:intergenic | 45.0% |
| ! | GTTGAGAAGAAACTTGGTGG+TGG | - | chr1_1:41976021-41976040 | None:intergenic | 45.0% |
| ! | TGGGTTGAGAAGAAACTTGG+TGG | - | chr1_1:41976024-41976043 | None:intergenic | 45.0% |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_1:41976104-41976123 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTACA+AGG | + | chr1_1:41976339-41976358 | Msa0022400:intron | 45.0% |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_1:41976637-41976656 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_1:41976638-41976657 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_1:41976979-41976998 | Msa0022400:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_1:41977343-41977362 | Msa0022400:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_1:41977687-41977706 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_1:41977712-41977731 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_1:41977729-41977748 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_1:41977798-41977817 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_1:41977838-41977857 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_1:41977839-41977858 | None:intergenic | 45.0% |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_1:41975814-41975833 | None:intergenic | 45.0% | |
| !! | GAAACTTGGTGGTGGATCTT+TGG | - | chr1_1:41976013-41976032 | None:intergenic | 45.0% |
| ! | GTTGAGAAGAAACTTGGTGG+TGG | - | chr1_1:41976021-41976040 | None:intergenic | 45.0% |
| ! | TGGGTTGAGAAGAAACTTGG+TGG | - | chr1_1:41976024-41976043 | None:intergenic | 45.0% |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_1:41976104-41976123 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTACA+AGG | + | chr1_1:41976339-41976358 | Msa0022400:intron | 45.0% |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_1:41976637-41976656 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_1:41976638-41976657 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_1:41976979-41976998 | Msa0022400:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_1:41977343-41977362 | Msa0022400:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_1:41977687-41977706 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_1:41977712-41977731 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_1:41977729-41977748 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_1:41977798-41977817 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_1:41977838-41977857 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_1:41977839-41977858 | None:intergenic | 45.0% |
| !! | CTTGGTGGTGGATCTTTGGT+GGG | - | chr1_1:41976009-41976028 | None:intergenic | 50.0% |
| !! | ACTTGGTGGTGGATCTTTGG+TGG | - | chr1_1:41976010-41976029 | None:intergenic | 50.0% |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_1:41976120-41976139 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_1:41976140-41976159 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_1:41976162-41976181 | None:intergenic | 50.0% | |
| ! | GCTAGACGTGAACCGTTTTC+CGG | + | chr1_1:41976570-41976589 | Msa0022400:CDS | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_1:41976636-41976655 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_1:41977705-41977724 | None:intergenic | 50.0% | |
| !! | CTTGGTGGTGGATCTTTGGT+GGG | - | chr1_1:41976009-41976028 | None:intergenic | 50.0% |
| !! | ACTTGGTGGTGGATCTTTGG+TGG | - | chr1_1:41976010-41976029 | None:intergenic | 50.0% |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_1:41976120-41976139 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_1:41976140-41976159 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_1:41976162-41976181 | None:intergenic | 50.0% | |
| ! | GCTAGACGTGAACCGTTTTC+CGG | + | chr1_1:41976570-41976589 | Msa0022400:CDS | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_1:41976636-41976655 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_1:41977705-41977724 | None:intergenic | 50.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_1:41976141-41976160 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_1:41976142-41976161 | Msa0022400:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_1:41976155-41976174 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_1:41976156-41976175 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_1:41976157-41976176 | None:intergenic | 55.0% | |
| TATCATCAGGTGGACCGGTG+AGG | + | chr1_1:41976545-41976564 | Msa0022400:intron | 55.0% | |
| ATCATCAGGTGGACCGGTGA+GGG | + | chr1_1:41976546-41976565 | Msa0022400:intron | 55.0% | |
| ! | TTCACGTCTAGCTCCCTCAC+CGG | - | chr1_1:41976562-41976581 | None:intergenic | 55.0% |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_1:41976623-41976642 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_1:41976635-41976654 | None:intergenic | 55.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_1:41976141-41976160 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_1:41976142-41976161 | Msa0022400:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_1:41976155-41976174 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_1:41976156-41976175 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_1:41976157-41976176 | None:intergenic | 55.0% | |
| TATCATCAGGTGGACCGGTG+AGG | + | chr1_1:41976545-41976564 | Msa0022400:intron | 55.0% | |
| ATCATCAGGTGGACCGGTGA+GGG | + | chr1_1:41976546-41976565 | Msa0022400:intron | 55.0% | |
| ! | TTCACGTCTAGCTCCCTCAC+CGG | - | chr1_1:41976562-41976581 | None:intergenic | 55.0% |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_1:41976623-41976642 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_1:41976635-41976654 | None:intergenic | 55.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_1:41976135-41976154 | None:intergenic | 60.0% | |
| CTTCGGTCGTCGCCGGAAAA+CGG | - | chr1_1:41976585-41976604 | None:intergenic | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_1:41976595-41976614 | Msa0022400:CDS | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_1:41977806-41977825 | Msa0022400:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_1:41977817-41977836 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_1:41977823-41977842 | None:intergenic | 60.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_1:41976135-41976154 | None:intergenic | 60.0% | |
| CTTCGGTCGTCGCCGGAAAA+CGG | - | chr1_1:41976585-41976604 | None:intergenic | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_1:41976595-41976614 | Msa0022400:CDS | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_1:41977806-41977825 | Msa0022400:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_1:41977817-41977836 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_1:41977823-41977842 | None:intergenic | 60.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_1:41976152-41976171 | None:intergenic | 65.0% | |
| TCGACGTCTTCGGTCGTCGC+CGG | - | chr1_1:41976592-41976611 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGTCGACGTCTT+CGG | - | chr1_1:41976602-41976621 | None:intergenic | 65.0% |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_1:41977818-41977837 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_1:41977824-41977843 | None:intergenic | 65.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_1:41976152-41976171 | None:intergenic | 65.0% | |
| TCGACGTCTTCGGTCGTCGC+CGG | - | chr1_1:41976592-41976611 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGTCGACGTCTT+CGG | - | chr1_1:41976602-41976621 | None:intergenic | 65.0% |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_1:41977818-41977837 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_1:41977824-41977843 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 41975792 | 41978111 | 41975792 | ID=Msa0022400;Name=Msa0022400 |
| chr1_1 | mRNA | 41975792 | 41978111 | 41975792 | ID=Msa0022400-mRNA-1;Parent=Msa0022400;Name=Msa0022400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|4|251|301 |
| chr1_1 | exon | 41975792 | 41976177 | 41975792 | ID=Msa0022400-mRNA-1:exon:12334;Parent=Msa0022400-mRNA-1 |
| chr1_1 | exon | 41976554 | 41976846 | 41976554 | ID=Msa0022400-mRNA-1:exon:12335;Parent=Msa0022400-mRNA-1 |
| chr1_1 | exon | 41976942 | 41977021 | 41976942 | ID=Msa0022400-mRNA-1:exon:12336;Parent=Msa0022400-mRNA-1 |
| chr1_1 | exon | 41977560 | 41978111 | 41977560 | ID=Msa0022400-mRNA-1:exon:12337;Parent=Msa0022400-mRNA-1 |
| chr1_1 | five_prime_UTR | 41975792 | 41975945 | 41975792 | ID=Msa0022400-mRNA-1:five_prime_utr;Parent=Msa0022400-mRNA-1 |
| chr1_1 | CDS | 41975946 | 41976177 | 41975946 | ID=Msa0022400-mRNA-1:cds;Parent=Msa0022400-mRNA-1 |
| chr1_1 | CDS | 41976554 | 41976846 | 41976554 | ID=Msa0022400-mRNA-1:cds;Parent=Msa0022400-mRNA-1 |
| chr1_1 | CDS | 41976942 | 41977021 | 41976942 | ID=Msa0022400-mRNA-1:cds;Parent=Msa0022400-mRNA-1 |
| chr1_1 | CDS | 41977560 | 41977860 | 41977560 | ID=Msa0022400-mRNA-1:cds;Parent=Msa0022400-mRNA-1 |
| chr1_1 | three_prime_UTR | 41977861 | 41978111 | 41977861 | ID=Msa0022400-mRNA-1:three_prime_utr;Parent=Msa0022400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
