Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118150 | XP_013467691.1 | 95.066 | 304 | 4 | 5 | 1 | 301 | 1 | 296 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118150 | sp|P46665|HAT14_ARATH | 51.090 | 321 | 86 | 7 | 1 | 266 | 1 | 305 | 1.13e-85 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118150 | A0A072VJV2 | 95.066 | 304 | 4 | 5 | 1 | 301 | 1 | 296 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0118150 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022400 | Msa0118150 | 0.880765 | 4.190502e-70 | -8.615850e-47 |
| Msa0037660 | Msa0118150 | 0.803962 | 2.713782e-49 | -8.615850e-47 |
| Msa0042240 | Msa0118150 | -0.802735 | 4.872584e-49 | -8.615850e-47 |
| Msa0118150 | Msa0164170 | 0.811456 | 6.938363e-51 | -8.615850e-47 |
| Msa0118150 | Msa0166180 | 0.802022 | 6.834022e-49 | -8.615850e-47 |
| Msa0118150 | Msa0195230 | 0.813964 | 1.960050e-51 | -8.615850e-47 |
| Msa0118150 | Msa0195260 | 0.814682 | 1.360441e-51 | -8.615850e-47 |
| Msa0118150 | Msa0279000 | 0.807639 | 4.580832e-50 | -8.615850e-47 |
| Msa0118150 | Msa0290800 | 0.813579 | 2.383076e-51 | -8.615850e-47 |
| Msa0118150 | Msa0418100 | 0.805767 | 1.138451e-49 | -8.615850e-47 |
| Msa0118150 | Msa0579080 | 0.810280 | 1.246541e-50 | -8.615850e-47 |
| Msa0118150 | Msa0720130 | -0.805495 | 1.298473e-49 | -8.615850e-47 |
| Msa0118150 | Msa0756670 | -0.820103 | 8.186895e-53 | -8.615850e-47 |
| Msa0118150 | Msa0761830 | 0.814293 | 1.658752e-51 | -8.615850e-47 |
| Msa0118150 | Msa0797980 | -0.800703 | 1.272882e-48 | -8.615850e-47 |
| Msa0118150 | Msa0804170 | 0.818452 | 1.945577e-52 | -8.615850e-47 |
| Msa0118150 | Msa0836060 | -0.818911 | 1.531068e-52 | -8.615850e-47 |
| Msa0118150 | Msa0842180 | 0.801364 | 9.325757e-49 | -8.615850e-47 |
| Msa0118150 | Msa0970100 | 0.806265 | 8.945955e-50 | -8.615850e-47 |
| Msa0118150 | Msa1022420 | 0.807464 | 4.990073e-50 | -8.615850e-47 |
| Msa0118150 | Msa1146980 | 0.812030 | 5.203071e-51 | -8.615850e-47 |
| Msa0118150 | Msa1197720 | 0.835913 | 1.272210e-56 | -8.615850e-47 |
| Msa0118150 | Msa1205270 | -0.801200 | 1.007189e-48 | -8.615850e-47 |
| Msa0118150 | Msa1251410 | 0.808769 | 2.632467e-50 | -8.615850e-47 |
| Msa0118150 | Msa1352580 | 0.817734 | 2.828321e-52 | -8.615850e-47 |
| Msa0118150 | Msa1413020 | 0.822933 | 1.817145e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118150 | MtrunA17_Chr1g0175651 | 95.066 | 304 | 4 | 5 | 1 | 301 | 1 | 296 | 0.0 | 570 |
| Msa0118150 | MtrunA17_Chr7g0258831 | 68.364 | 275 | 74 | 8 | 1 | 264 | 1 | 273 | 7.70e-117 | 338 |
| Msa0118150 | MtrunA17_Chr2g0308611 | 51.775 | 338 | 90 | 10 | 1 | 277 | 1 | 326 | 3.66e-81 | 249 |
| Msa0118150 | MtrunA17_Chr4g0055851 | 59.535 | 215 | 65 | 5 | 81 | 290 | 57 | 254 | 1.94e-74 | 229 |
| Msa0118150 | MtrunA17_Chr5g0399491 | 62.887 | 194 | 50 | 5 | 81 | 265 | 71 | 251 | 2.93e-71 | 222 |
| Msa0118150 | MtrunA17_Chr4g0054421 | 79.070 | 129 | 25 | 1 | 137 | 263 | 111 | 239 | 1.30e-68 | 214 |
| Msa0118150 | MtrunA17_Chr8g0335131 | 62.162 | 185 | 39 | 4 | 97 | 262 | 86 | 258 | 5.79e-64 | 203 |
| Msa0118150 | MtrunA17_Chr5g0400781 | 75.000 | 124 | 30 | 1 | 142 | 264 | 113 | 236 | 3.42e-62 | 198 |
| Msa0118150 | MtrunA17_Chr1g0151971 | 51.500 | 200 | 75 | 6 | 79 | 264 | 54 | 245 | 9.61e-55 | 179 |
| Msa0118150 | MtrunA17_Chr4g0044091 | 65.323 | 124 | 36 | 2 | 146 | 262 | 59 | 182 | 4.96e-47 | 156 |
| Msa0118150 | MtrunA17_Chr3g0135331 | 63.235 | 136 | 49 | 1 | 142 | 277 | 136 | 270 | 1.01e-45 | 156 |
| Msa0118150 | MtrunA17_Chr2g0299031 | 56.296 | 135 | 49 | 3 | 134 | 263 | 66 | 195 | 4.20e-39 | 136 |
| Msa0118150 | MtrunA17_Chr4g0071411 | 57.018 | 114 | 45 | 1 | 153 | 262 | 90 | 203 | 2.21e-34 | 124 |
| Msa0118150 | MtrunA17_Chr7g0217111 | 37.647 | 170 | 97 | 3 | 110 | 275 | 40 | 204 | 8.38e-22 | 92.4 |
| Msa0118150 | MtrunA17_Chr4g0060031 | 46.667 | 120 | 60 | 2 | 119 | 238 | 67 | 182 | 1.22e-19 | 87.8 |
| Msa0118150 | MtrunA17_Chr5g0416391 | 46.875 | 96 | 51 | 0 | 143 | 238 | 69 | 164 | 2.44e-18 | 83.2 |
| Msa0118150 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 62 | 1 | 134 | 244 | 60 | 174 | 3.92e-18 | 82.4 |
| Msa0118150 | MtrunA17_Chr3g0123691 | 34.973 | 183 | 108 | 4 | 101 | 273 | 10 | 191 | 4.73e-18 | 82.8 |
| Msa0118150 | MtrunA17_Chr7g0265521 | 42.105 | 95 | 55 | 0 | 144 | 238 | 56 | 150 | 8.28e-18 | 80.9 |
| Msa0118150 | MtrunA17_Chr6g0450991 | 41.026 | 117 | 69 | 0 | 148 | 264 | 64 | 180 | 1.01e-17 | 81.6 |
| Msa0118150 | MtrunA17_Chr1g0179581 | 44.828 | 87 | 48 | 0 | 147 | 233 | 24 | 110 | 2.00e-17 | 76.6 |
| Msa0118150 | MtrunA17_Chr8g0381741 | 43.200 | 125 | 61 | 2 | 121 | 238 | 27 | 148 | 3.58e-17 | 80.5 |
| Msa0118150 | MtrunA17_Chr6g0453021 | 40.136 | 147 | 74 | 4 | 104 | 237 | 44 | 189 | 4.98e-17 | 79.3 |
| Msa0118150 | MtrunA17_Chr3g0119291 | 46.226 | 106 | 48 | 2 | 142 | 238 | 48 | 153 | 5.38e-17 | 79.0 |
| Msa0118150 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 151 | 237 | 87 | 180 | 1.77e-16 | 78.6 |
| Msa0118150 | MtrunA17_Chr8g0362751 | 44.681 | 94 | 45 | 1 | 151 | 237 | 89 | 182 | 2.79e-15 | 74.7 |
| Msa0118150 | MtrunA17_Chr5g0403691 | 40.741 | 108 | 60 | 1 | 128 | 235 | 34 | 137 | 2.33e-11 | 62.4 |
| Msa0118150 | MtrunA17_Chr8g0346251 | 44.595 | 74 | 41 | 0 | 163 | 236 | 53 | 126 | 4.24e-11 | 62.0 |
| Msa0118150 | MtrunA17_Chr3g0127511 | 40.625 | 96 | 50 | 1 | 154 | 242 | 41 | 136 | 4.83e-11 | 62.0 |
| Msa0118150 | MtrunA17_Chr5g0403701 | 40.000 | 110 | 62 | 1 | 128 | 237 | 34 | 139 | 4.92e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118150 | AT5G06710.1 | 51.090 | 321 | 86 | 7 | 1 | 266 | 1 | 305 | 1.15e-86 | 263 |
| Msa0118150 | AT5G47370.1 | 52.273 | 264 | 104 | 11 | 48 | 296 | 22 | 278 | 9.67e-71 | 221 |
| Msa0118150 | AT3G60390.1 | 59.901 | 202 | 58 | 7 | 81 | 262 | 76 | 274 | 2.51e-67 | 213 |
| Msa0118150 | AT4G16780.1 | 59.813 | 214 | 68 | 6 | 81 | 289 | 68 | 268 | 1.98e-66 | 209 |
| Msa0118150 | AT4G37790.1 | 79.508 | 122 | 25 | 0 | 142 | 263 | 117 | 238 | 7.27e-66 | 208 |
| Msa0118150 | AT4G17460.1 | 49.811 | 265 | 84 | 10 | 48 | 282 | 21 | 266 | 8.38e-65 | 205 |
| Msa0118150 | AT2G44910.1 | 57.921 | 202 | 61 | 5 | 81 | 265 | 84 | 278 | 1.15e-64 | 206 |
| Msa0118150 | AT2G22800.1 | 77.049 | 122 | 28 | 0 | 142 | 263 | 104 | 225 | 1.16e-63 | 202 |
| Msa0118150 | AT2G01430.1 | 47.826 | 184 | 76 | 5 | 89 | 263 | 77 | 249 | 1.31e-44 | 153 |
| Msa0118150 | AT1G70920.2 | 59.124 | 137 | 42 | 4 | 141 | 273 | 27 | 153 | 4.55e-41 | 140 |
| Msa0118150 | AT1G70920.1 | 59.124 | 137 | 42 | 4 | 141 | 273 | 57 | 183 | 5.47e-41 | 141 |
| Msa0118150 | AT5G06710.4 | 41.634 | 257 | 79 | 7 | 1 | 202 | 1 | 241 | 1.06e-39 | 140 |
| Msa0118150 | AT2G01430.2 | 42.623 | 122 | 52 | 3 | 90 | 202 | 78 | 190 | 1.69e-20 | 88.2 |
| Msa0118150 | AT5G06710.2 | 36.052 | 233 | 72 | 9 | 1 | 175 | 1 | 214 | 1.01e-19 | 86.7 |
| Msa0118150 | AT5G06710.3 | 36.052 | 233 | 72 | 9 | 1 | 175 | 1 | 214 | 1.01e-19 | 86.7 |
| Msa0118150 | AT1G69780.1 | 44.340 | 106 | 59 | 0 | 133 | 238 | 67 | 172 | 3.68e-18 | 83.2 |
| Msa0118150 | AT1G26960.1 | 44.860 | 107 | 55 | 1 | 143 | 245 | 63 | 169 | 9.08e-18 | 81.6 |
| Msa0118150 | AT5G03790.1 | 39.130 | 115 | 69 | 1 | 144 | 257 | 70 | 184 | 2.33e-17 | 80.1 |
| Msa0118150 | AT2G36610.1 | 41.176 | 102 | 52 | 1 | 146 | 239 | 66 | 167 | 1.79e-16 | 76.3 |
| Msa0118150 | AT5G15150.1 | 43.590 | 117 | 61 | 3 | 129 | 240 | 92 | 208 | 8.06e-16 | 77.0 |
| Msa0118150 | AT3G01220.1 | 44.330 | 97 | 50 | 1 | 151 | 243 | 87 | 183 | 3.20e-15 | 74.7 |
| Msa0118150 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 147 | 241 | 58 | 156 | 4.50e-15 | 74.7 |
| Msa0118150 | AT3G01470.1 | 44.565 | 92 | 51 | 0 | 151 | 242 | 68 | 159 | 4.60e-15 | 74.3 |
| Msa0118150 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 151 | 216 | 17 | 82 | 1.59e-14 | 70.9 |
| Msa0118150 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 151 | 216 | 25 | 90 | 1.67e-14 | 70.9 |
| Msa0118150 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 151 | 216 | 25 | 90 | 1.67e-14 | 70.9 |
| Msa0118150 | AT1G27045.1 | 57.576 | 66 | 28 | 0 | 151 | 216 | 68 | 133 | 2.51e-14 | 71.2 |
| Msa0118150 | AT4G40060.1 | 43.878 | 98 | 51 | 1 | 147 | 240 | 55 | 152 | 2.58e-14 | 72.4 |
| Msa0118150 | AT5G65310.1 | 41.837 | 98 | 50 | 1 | 148 | 238 | 69 | 166 | 3.82e-14 | 72.0 |
| Msa0118150 | AT5G65310.2 | 41.837 | 98 | 50 | 1 | 148 | 238 | 51 | 148 | 4.05e-14 | 71.6 |
| Msa0118150 | AT1G27045.4 | 57.576 | 66 | 28 | 0 | 151 | 216 | 68 | 133 | 4.31e-14 | 71.2 |
| Msa0118150 | AT5G03790.2 | 35.772 | 123 | 71 | 2 | 144 | 258 | 70 | 192 | 5.85e-14 | 69.7 |
| Msa0118150 | AT2G18550.1 | 44.554 | 101 | 54 | 2 | 137 | 237 | 49 | 147 | 1.35e-13 | 69.3 |
| Msa0118150 | AT2G46680.2 | 43.373 | 83 | 47 | 0 | 154 | 236 | 35 | 117 | 6.52e-13 | 67.8 |
| Msa0118150 | AT2G46680.1 | 40.659 | 91 | 54 | 0 | 146 | 236 | 27 | 117 | 6.94e-13 | 67.8 |
| Msa0118150 | AT4G36740.2 | 41.237 | 97 | 56 | 1 | 141 | 237 | 47 | 142 | 4.71e-12 | 64.7 |
| Msa0118150 | AT4G36740.1 | 41.237 | 97 | 56 | 1 | 141 | 237 | 46 | 141 | 4.92e-12 | 64.7 |
| Msa0118150 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 154 | 236 | 33 | 115 | 7.09e-11 | 61.6 |
Find 88 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTGAGCCTGATGGGCT+TGG | 0.185004 | 1_3:-40385830 | None:intergenic |
| GGCTTGAGCCTGATGGGCTT+GGG | 0.249675 | 1_3:-40385829 | None:intergenic |
| CTACCAACAACTTCATAAAA+TGG | 0.263744 | 1_3:+40383940 | Msa0118150:exon |
| AGAAAAGAGATAGGTAATTT+TGG | 0.264059 | 1_3:-40383989 | None:intergenic |
| AGGAATAACAATGCTGAATA+TGG | 0.265099 | 1_3:+40384695 | Msa0118150:CDS |
| TGAAATGAAGAAGGGAATAA+TGG | 0.282805 | 1_3:-40383859 | None:intergenic |
| GGAAGTGATGATGATGAAAA+TGG | 0.308043 | 1_3:+40384758 | Msa0118150:CDS |
| CTTCTCACCTCCCCATTCCT+TGG | 0.329294 | 1_3:+40384155 | Msa0118150:CDS |
| GGCTTGGGCTTGAGCCTGAT+GGG | 0.342578 | 1_3:-40385835 | None:intergenic |
| GGGCTTGGGCTTGAGCCTGA+TGG | 0.356666 | 1_3:-40385836 | None:intergenic |
| TTGACTTGTTGGTGTTTGTT+TGG | 0.360920 | 1_3:-40385779 | None:intergenic |
| TGTGATGTTTGAAAGGGTTT+GGG | 0.363942 | 1_3:-40383827 | None:intergenic |
| ATGGAACTTGCTTTGAGCTT+AGG | 0.368374 | 1_3:+40383959 | Msa0118150:CDS |
| GATGGTACTATAAGATTATA+AGG | 0.373420 | 1_3:-40385876 | None:intergenic |
| CTTGGTAGTGGATCTTTGTT+GGG | 0.374601 | 1_3:-40384019 | None:intergenic |
| GAAATGAAGAAGGGAATAAT+GGG | 0.391250 | 1_3:-40383858 | None:intergenic |
| GGAAGAAGGTCTAGTTGAAT+AGG | 0.392211 | 1_3:-40384100 | None:intergenic |
| GTCCTCGTCAAGTTGAAGTT+TGG | 0.396562 | 1_3:+40384998 | Msa0118150:CDS |
| TTGTGATGTTTGAAAGGGTT+TGG | 0.398781 | 1_3:-40383828 | None:intergenic |
| TGCTCAAGCCCAAGCCCATC+AGG | 0.400227 | 1_3:+40385821 | Msa0118150:CDS |
| ACTTGGTAGTGGATCTTTGT+TGG | 0.408944 | 1_3:-40384020 | None:intergenic |
| ATGAAGGAATCTGATGGGCT+TGG | 0.420734 | 1_3:-40385851 | None:intergenic |
| GGTTGGGTGAGCCAAGGAAT+GGG | 0.421883 | 1_3:-40384166 | None:intergenic |
| CTTCGGTCGTCGCCGGAAAA+CGG | 0.438226 | 1_3:-40384601 | None:intergenic |
| TGGCAGTATTCTTGACTTGT+TGG | 0.444669 | 1_3:-40385790 | None:intergenic |
| TAGATAGAAAATTACATGGT+TGG | 0.446528 | 1_3:-40384183 | None:intergenic |
| TGAAGGAATCTGATGGGCTT+GGG | 0.452845 | 1_3:-40385850 | None:intergenic |
| TTGCAATGGATTTCAGTATG+AGG | 0.457926 | 1_3:+40384675 | Msa0118150:CDS |
| GTGTTTGTTTGGTTGTTGCA+AGG | 0.458788 | 1_3:-40385768 | None:intergenic |
| AGATAGAAAATTACATGGTT+GGG | 0.461778 | 1_3:-40384182 | None:intergenic |
| CTCAAAATGATTAGAATGAA+AGG | 0.463140 | 1_3:-40386051 | None:intergenic |
| TTATATTTGTGATGTTTGAA+AGG | 0.471630 | 1_3:-40383834 | None:intergenic |
| AGTGCAAATTGAAATGAAGA+AGG | 0.476272 | 1_3:-40383868 | None:intergenic |
| TTCTGTGTCACCATTTGCAA+TGG | 0.477662 | 1_3:+40384661 | Msa0118150:CDS |
| CACATAGTGAGAGTGGTAGC+TGG | 0.479169 | 1_3:-40385717 | None:intergenic |
| GGGTGAGGAGATCTAAGAAC+AGG | 0.479275 | 1_3:-40384130 | None:intergenic |
| GGAATGGGGAGGTGAGAAGA+AGG | 0.480630 | 1_3:-40384151 | None:intergenic |
| TATATTTGTGATGTTTGAAA+GGG | 0.482388 | 1_3:-40383833 | None:intergenic |
| TGTTTGTTTGGTTGTTGCAA+GGG | 0.493080 | 1_3:-40385767 | None:intergenic |
| ATACTGAAATCCATTGCAAA+TGG | 0.496930 | 1_3:-40384671 | None:intergenic |
| GATCTAAGAACAGGAGAGAA+AGG | 0.503681 | 1_3:-40384121 | None:intergenic |
| TGGTTGGGTGAGCCAAGGAA+TGG | 0.507151 | 1_3:-40384167 | None:intergenic |
| TCGACGTCTTCGGTCGTCGC+CGG | 0.507773 | 1_3:-40384608 | None:intergenic |
| GGTACCGTCGTCGACGTCTT+CGG | 0.509499 | 1_3:-40384618 | None:intergenic |
| AGAAACAAGAGAGAAAATGA+AGG | 0.510237 | 1_3:+40384722 | Msa0118150:CDS |
| ATCATCAGGTGGACCGGTGA+GGG | 0.515305 | 1_3:+40384565 | Msa0118150:intron |
| GGTTTGTCAAGAAAAGAGAT+AGG | 0.515910 | 1_3:-40383998 | None:intergenic |
| AATGAAGGTGAAGCTGAAAG+AGG | 0.521199 | 1_3:+40384737 | Msa0118150:CDS |
| TTTGTTATCATCAGGTGGAC+CGG | 0.521239 | 1_3:+40384559 | Msa0118150:intron |
| GAATGGGGAGGTGAGAAGAA+GGG | 0.522886 | 1_3:-40384150 | None:intergenic |
| TGGGCTTGAGCATTAGAGAA+TGG | 0.523806 | 1_3:-40385810 | None:intergenic |
| GAAGTGATGATGATGAAAAT+GGG | 0.525282 | 1_3:+40384759 | Msa0118150:CDS |
| GGGAGGTGAGAAGAAGGGTG+AGG | 0.527359 | 1_3:-40384145 | None:intergenic |
| AAATGGTGACACAGAACTGC+TGG | 0.531470 | 1_3:-40384654 | None:intergenic |
| TGTTGGGTTGAGAAGAAACT+TGG | 0.533644 | 1_3:-40384037 | None:intergenic |
| GTTGCTACACGTTCACAAGA+AGG | 0.535467 | 1_3:-40385741 | None:intergenic |
| GTGCAAATTGAAATGAAGAA+GGG | 0.535541 | 1_3:-40383867 | None:intergenic |
| TATGATAGATAATATCATAG+AGG | 0.549542 | 1_3:+40385942 | Msa0118150:three_prime_UTR |
| ATGATGAAAATGGGTCAACT+AGG | 0.551419 | 1_3:+40384768 | Msa0118150:CDS |
| GAACAGGAGAGAAAGGAAGA+AGG | 0.553836 | 1_3:-40384114 | None:intergenic |
| AAGGTCATGAAGGAATCTGA+TGG | 0.569756 | 1_3:-40385857 | None:intergenic |
| ATGATAGATAATATCATAGA+GGG | 0.574506 | 1_3:+40385943 | Msa0118150:three_prime_UTR |
| GTTGAGAAGAAACTTGGTAG+TGG | 0.575951 | 1_3:-40384031 | None:intergenic |
| GAAATTTACAGGATTAAGAG+TGG | 0.579010 | 1_3:-40384852 | None:intergenic |
| AAAGCTAAAGCAAACAGAAG+TGG | 0.588208 | 1_3:+40385578 | Msa0118150:CDS |
| GCTGGAAGTTGCATGTAGAA+TGG | 0.591856 | 1_3:-40385699 | None:intergenic |
| ATAAGATTATAAGGTCATGA+AGG | 0.594650 | 1_3:-40385867 | None:intergenic |
| AGAAGGTCTAGTTGAATAGG+TGG | 0.598462 | 1_3:-40384097 | None:intergenic |
| AGAAGGACACATAGTGAGAG+TGG | 0.600200 | 1_3:-40385724 | None:intergenic |
| GATGTTTGAAAGGGTTTGGG+AGG | 0.603362 | 1_3:-40383824 | None:intergenic |
| GGTTTCAAAATAGAAGAGCA+AGG | 0.607323 | 1_3:+40385019 | Msa0118150:CDS |
| AATGGTGACACAGAACTGCT+GGG | 0.607777 | 1_3:-40384653 | None:intergenic |
| AGTTTCTTCTCAACCCAACA+AGG | 0.609680 | 1_3:+40384040 | Msa0118150:CDS |
| TTACATGGTTGGGTGAGCCA+AGG | 0.611815 | 1_3:-40384172 | None:intergenic |
| TTCACGTCTAGCTCCCTCAC+CGG | 0.612339 | 1_3:-40384578 | None:intergenic |
| AGGTCATGAAGGAATCTGAT+GGG | 0.612514 | 1_3:-40385856 | None:intergenic |
| AATAACAATGCTGAATATGG+AGG | 0.617867 | 1_3:+40384698 | Msa0118150:CDS |
| AACCAAACTTCAACTTGACG+AGG | 0.618703 | 1_3:-40385000 | None:intergenic |
| GTTGGGTGAGCCAAGGAATG+GGG | 0.619312 | 1_3:-40384165 | None:intergenic |
| TATCATCAGGTGGACCGGTG+AGG | 0.627118 | 1_3:+40384564 | Msa0118150:intron |
| ATGGTGACACAGAACTGCTG+GGG | 0.640069 | 1_3:-40384652 | None:intergenic |
| CATTCTACCATGTCACACAA+AGG | 0.656673 | 1_3:-40386086 | None:intergenic |
| AAATCAAAATTATATACACA+CGG | 0.656876 | 1_3:-40386003 | None:intergenic |
| ACGACCGAAGACGTCGACGA+CGG | 0.675975 | 1_3:+40384614 | Msa0118150:CDS |
| GGGTGAGCCAAGGAATGGGG+AGG | 0.690782 | 1_3:-40384162 | None:intergenic |
| ATATCATAGAGGGTGTGACA+AGG | 0.693551 | 1_3:+40385953 | Msa0118150:three_prime_UTR |
| AATCTTATAGTACCATCACA+TGG | 0.693563 | 1_3:+40385882 | Msa0118150:three_prime_UTR |
| TGGTGACACAGAACTGCTGG+GGG | 0.743324 | 1_3:-40384651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_3:40384866-40384885 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_3:40385055-40385074 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_3:40385063-40385082 | Msa0118150:intron | 10.0% |
| !!! | CATAAAAAAAGATATTTTTT+AGG | - | chr1_3:40385107-40385126 | None:intergenic | 10.0% |
| !! | AAAAATAAACAAAAAAATAC+TGG | - | chr1_3:40385387-40385406 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_3:40385535-40385554 | Msa0118150:intron | 10.0% |
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_3:40384866-40384885 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_3:40385055-40385074 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_3:40385063-40385082 | Msa0118150:intron | 10.0% |
| !!! | CATAAAAAAAGATATTTTTT+AGG | - | chr1_3:40385107-40385126 | None:intergenic | 10.0% |
| !! | AAAAATAAACAAAAAAATAC+TGG | - | chr1_3:40385387-40385406 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_3:40385535-40385554 | Msa0118150:intron | 10.0% |
| !! | AAATATATAAAACCATTTAG+AGG | - | chr1_3:40384227-40384246 | None:intergenic | 15.0% |
| !!! | TGAAATGTCAATTTTTTTAA+CGG | + | chr1_3:40384424-40384443 | Msa0118150:intron | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_3:40384898-40384917 | Msa0118150:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_3:40385266-40385285 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_3:40386006-40386025 | None:intergenic | 15.0% |
| !! | AAATATATAAAACCATTTAG+AGG | - | chr1_3:40384227-40384246 | None:intergenic | 15.0% |
| !!! | TGAAATGTCAATTTTTTTAA+CGG | + | chr1_3:40384424-40384443 | Msa0118150:intron | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_3:40384898-40384917 | Msa0118150:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_3:40385266-40385285 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_3:40386006-40386025 | None:intergenic | 15.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_3:40383836-40383855 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_3:40383837-40383856 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_3:40384190-40384209 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_3:40384551-40384570 | Msa0118150:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_3:40385164-40385183 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTACATGAAAAAA+AGG | - | chr1_3:40385419-40385438 | None:intergenic | 20.0% |
| !!! | ATCTTATGGTTTTGTTTTTT+TGG | - | chr1_3:40385435-40385454 | None:intergenic | 20.0% |
| !! | TGTTAGATTTCTTTATCTTA+TGG | - | chr1_3:40385449-40385468 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_3:40385474-40385493 | Msa0118150:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_3:40385502-40385521 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_3:40385942-40385961 | Msa0118150:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_3:40385943-40385962 | Msa0118150:three_prime_UTR | 20.0% |
| !! | GAAAAAAAATTAACAAGTCT+AGG | - | chr1_3:40386032-40386051 | None:intergenic | 20.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_3:40383836-40383855 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_3:40383837-40383856 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_3:40384190-40384209 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_3:40384551-40384570 | Msa0118150:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_3:40385164-40385183 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTACATGAAAAAA+AGG | - | chr1_3:40385419-40385438 | None:intergenic | 20.0% |
| !!! | ATCTTATGGTTTTGTTTTTT+TGG | - | chr1_3:40385435-40385454 | None:intergenic | 20.0% |
| !! | TGTTAGATTTCTTTATCTTA+TGG | - | chr1_3:40385449-40385468 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_3:40385474-40385493 | Msa0118150:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_3:40385502-40385521 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_3:40385942-40385961 | Msa0118150:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_3:40385943-40385962 | Msa0118150:three_prime_UTR | 20.0% |
| !! | GAAAAAAAATTAACAAGTCT+AGG | - | chr1_3:40386032-40386051 | None:intergenic | 20.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_3:40383992-40384011 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_3:40384185-40384204 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_3:40384186-40384205 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTCCTCTAAA+TGG | + | chr1_3:40384212-40384231 | Msa0118150:intron | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_3:40384326-40384345 | Msa0118150:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_3:40384327-40384346 | Msa0118150:intron | 25.0% |
| !!! | TCAATTTTTTTAACGGATCT+AGG | + | chr1_3:40384431-40384450 | Msa0118150:intron | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_3:40385553-40385572 | Msa0118150:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_3:40385870-40385889 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_3:40385879-40385898 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_3:40385897-40385916 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_3:40386054-40386073 | None:intergenic | 25.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_3:40383992-40384011 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_3:40384185-40384204 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_3:40384186-40384205 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTCCTCTAAA+TGG | + | chr1_3:40384212-40384231 | Msa0118150:intron | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_3:40384326-40384345 | Msa0118150:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_3:40384327-40384346 | Msa0118150:intron | 25.0% |
| !!! | TCAATTTTTTTAACGGATCT+AGG | + | chr1_3:40384431-40384450 | Msa0118150:intron | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_3:40385553-40385572 | Msa0118150:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_3:40385870-40385889 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_3:40385879-40385898 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_3:40385897-40385916 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_3:40386054-40386073 | None:intergenic | 25.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_3:40383861-40383880 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_3:40383862-40383881 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_3:40383870-40383889 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_3:40383871-40383890 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_3:40383940-40383959 | Msa0118150:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_3:40383946-40383965 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_3:40384064-40384083 | Msa0118150:CDS | 30.0% | |
| AAAACCTTGAACCAAATCTT+GGG | - | chr1_3:40384365-40384384 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTTATCATCAGG+TGG | + | chr1_3:40384554-40384573 | Msa0118150:intron | 30.0% |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_3:40384674-40384693 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_3:40384695-40384714 | Msa0118150:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_3:40384698-40384717 | Msa0118150:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_3:40384722-40384741 | Msa0118150:CDS | 30.0% | |
| ! | GAAGTGATGATGATGAAAAT+GGG | + | chr1_3:40384759-40384778 | Msa0118150:CDS | 30.0% |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_3:40384855-40384874 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_3:40385171-40385190 | Msa0118150:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_3:40385882-40385901 | Msa0118150:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_3:40386079-40386098 | Msa0118150:three_prime_UTR | 30.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_3:40383861-40383880 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_3:40383862-40383881 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_3:40383870-40383889 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_3:40383871-40383890 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_3:40383940-40383959 | Msa0118150:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_3:40383946-40383965 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_3:40384064-40384083 | Msa0118150:CDS | 30.0% | |
| AAAACCTTGAACCAAATCTT+GGG | - | chr1_3:40384365-40384384 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTTATCATCAGG+TGG | + | chr1_3:40384554-40384573 | Msa0118150:intron | 30.0% |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_3:40384674-40384693 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_3:40384695-40384714 | Msa0118150:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_3:40384698-40384717 | Msa0118150:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_3:40384722-40384741 | Msa0118150:CDS | 30.0% | |
| ! | GAAGTGATGATGATGAAAAT+GGG | + | chr1_3:40384759-40384778 | Msa0118150:CDS | 30.0% |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_3:40384855-40384874 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_3:40385171-40385190 | Msa0118150:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_3:40385882-40385901 | Msa0118150:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_3:40386079-40386098 | Msa0118150:three_prime_UTR | 30.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_3:40383830-40383849 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_3:40383831-40383850 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_3:40384001-40384020 | None:intergenic | 35.0% | |
| !!! | TTCTGAAGCTTTTCCTTGTT+GGG | - | chr1_3:40384056-40384075 | None:intergenic | 35.0% |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_3:40384351-40384370 | Msa0118150:intron | 35.0% | |
| CAAAACCTTGAACCAAATCT+TGG | - | chr1_3:40384366-40384385 | None:intergenic | 35.0% | |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_3:40384675-40384694 | Msa0118150:CDS | 35.0% |
| ! | GGAAGTGATGATGATGAAAA+TGG | + | chr1_3:40384758-40384777 | Msa0118150:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_3:40384768-40384787 | Msa0118150:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_3:40385019-40385038 | Msa0118150:CDS | 35.0% | |
| TGTAAGCAATAAACGAAGCT+CGG | - | chr1_3:40385332-40385351 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_3:40385342-40385361 | Msa0118150:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_3:40385343-40385362 | Msa0118150:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_3:40385578-40385597 | Msa0118150:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_3:40385770-40385789 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_3:40385782-40385801 | None:intergenic | 35.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_3:40383830-40383849 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_3:40383831-40383850 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_3:40384001-40384020 | None:intergenic | 35.0% | |
| !!! | TTCTGAAGCTTTTCCTTGTT+GGG | - | chr1_3:40384056-40384075 | None:intergenic | 35.0% |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_3:40384351-40384370 | Msa0118150:intron | 35.0% | |
| CAAAACCTTGAACCAAATCT+TGG | - | chr1_3:40384366-40384385 | None:intergenic | 35.0% | |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_3:40384675-40384694 | Msa0118150:CDS | 35.0% |
| ! | GGAAGTGATGATGATGAAAA+TGG | + | chr1_3:40384758-40384777 | Msa0118150:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_3:40384768-40384787 | Msa0118150:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_3:40385019-40385038 | Msa0118150:CDS | 35.0% | |
| TGTAAGCAATAAACGAAGCT+CGG | - | chr1_3:40385332-40385351 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_3:40385342-40385361 | Msa0118150:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_3:40385343-40385362 | Msa0118150:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_3:40385578-40385597 | Msa0118150:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_3:40385770-40385789 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_3:40385782-40385801 | None:intergenic | 35.0% |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_3:40383959-40383978 | Msa0118150:CDS | 40.0% |
| !! | CTTGGTAGTGGATCTTTGTT+GGG | - | chr1_3:40384022-40384041 | None:intergenic | 40.0% |
| !! | ACTTGGTAGTGGATCTTTGT+TGG | - | chr1_3:40384023-40384042 | None:intergenic | 40.0% |
| GTTGAGAAGAAACTTGGTAG+TGG | - | chr1_3:40384034-40384053 | None:intergenic | 40.0% | |
| !! | TGTTGGGTTGAGAAGAAACT+TGG | - | chr1_3:40384040-40384059 | None:intergenic | 40.0% |
| AGTTTCTTCTCAACCCAACA+AGG | + | chr1_3:40384040-40384059 | Msa0118150:CDS | 40.0% | |
| !!! | CTTCTGAAGCTTTTCCTTGT+TGG | - | chr1_3:40384057-40384076 | None:intergenic | 40.0% |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_3:40384100-40384119 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_3:40384103-40384122 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_3:40384124-40384143 | None:intergenic | 40.0% | |
| ! | TTTGTTATCATCAGGTGGAC+CGG | + | chr1_3:40384559-40384578 | Msa0118150:intron | 40.0% |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_3:40384661-40384680 | Msa0118150:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_3:40384737-40384756 | Msa0118150:CDS | 40.0% | |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_3:40384957-40384976 | Msa0118150:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_3:40385003-40385022 | None:intergenic | 40.0% | |
| ! | AATAAACGAAGCTCGGTTTG+AGG | - | chr1_3:40385325-40385344 | None:intergenic | 40.0% |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_3:40385771-40385790 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_3:40385793-40385812 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_3:40385859-40385878 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_3:40385860-40385879 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_3:40385953-40385972 | Msa0118150:three_prime_UTR | 40.0% |
| CATTCTACCATGTCACACAA+AGG | - | chr1_3:40386089-40386108 | None:intergenic | 40.0% | |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_3:40383959-40383978 | Msa0118150:CDS | 40.0% |
| !! | CTTGGTAGTGGATCTTTGTT+GGG | - | chr1_3:40384022-40384041 | None:intergenic | 40.0% |
| !! | ACTTGGTAGTGGATCTTTGT+TGG | - | chr1_3:40384023-40384042 | None:intergenic | 40.0% |
| GTTGAGAAGAAACTTGGTAG+TGG | - | chr1_3:40384034-40384053 | None:intergenic | 40.0% | |
| !! | TGTTGGGTTGAGAAGAAACT+TGG | - | chr1_3:40384040-40384059 | None:intergenic | 40.0% |
| AGTTTCTTCTCAACCCAACA+AGG | + | chr1_3:40384040-40384059 | Msa0118150:CDS | 40.0% | |
| !!! | CTTCTGAAGCTTTTCCTTGT+TGG | - | chr1_3:40384057-40384076 | None:intergenic | 40.0% |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_3:40384100-40384119 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_3:40384103-40384122 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_3:40384124-40384143 | None:intergenic | 40.0% | |
| ! | TTTGTTATCATCAGGTGGAC+CGG | + | chr1_3:40384559-40384578 | Msa0118150:intron | 40.0% |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_3:40384661-40384680 | Msa0118150:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_3:40384737-40384756 | Msa0118150:CDS | 40.0% | |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_3:40384957-40384976 | Msa0118150:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_3:40385003-40385022 | None:intergenic | 40.0% | |
| ! | AATAAACGAAGCTCGGTTTG+AGG | - | chr1_3:40385325-40385344 | None:intergenic | 40.0% |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_3:40385771-40385790 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_3:40385793-40385812 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_3:40385859-40385878 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_3:40385860-40385879 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_3:40385953-40385972 | Msa0118150:three_prime_UTR | 40.0% |
| CATTCTACCATGTCACACAA+AGG | - | chr1_3:40386089-40386108 | None:intergenic | 40.0% | |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_3:40383827-40383846 | None:intergenic | 45.0% | |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_3:40384117-40384136 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTTCA+AGG | + | chr1_3:40384358-40384377 | Msa0118150:intron | 45.0% |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_3:40384656-40384675 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_3:40384657-40384676 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_3:40384998-40385017 | Msa0118150:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_3:40385361-40385380 | Msa0118150:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_3:40385702-40385721 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_3:40385727-40385746 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_3:40385744-40385763 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_3:40385813-40385832 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_3:40385853-40385872 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_3:40385854-40385873 | None:intergenic | 45.0% |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_3:40383827-40383846 | None:intergenic | 45.0% | |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_3:40384117-40384136 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTTCA+AGG | + | chr1_3:40384358-40384377 | Msa0118150:intron | 45.0% |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_3:40384656-40384675 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_3:40384657-40384676 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_3:40384998-40385017 | Msa0118150:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_3:40385361-40385380 | Msa0118150:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_3:40385702-40385721 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_3:40385727-40385746 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_3:40385744-40385763 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_3:40385813-40385832 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_3:40385853-40385872 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_3:40385854-40385873 | None:intergenic | 45.0% |
| !!! | ATAAAAAAAGATATTTTTTA+GGG | - | chr1_3:40385106-40385125 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAGATATTTTTTA+GGG | - | chr1_3:40385106-40385125 | None:intergenic | 5.0% |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_3:40384133-40384152 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_3:40384153-40384172 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_3:40384175-40384194 | None:intergenic | 50.0% | |
| ! | GCTAGACGTGAACCGTTTTC+CGG | + | chr1_3:40384589-40384608 | Msa0118150:CDS | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_3:40384655-40384674 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_3:40385720-40385739 | None:intergenic | 50.0% | |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_3:40384133-40384152 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_3:40384153-40384172 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_3:40384175-40384194 | None:intergenic | 50.0% | |
| ! | GCTAGACGTGAACCGTTTTC+CGG | + | chr1_3:40384589-40384608 | Msa0118150:CDS | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_3:40384655-40384674 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_3:40385720-40385739 | None:intergenic | 50.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_3:40384154-40384173 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_3:40384155-40384174 | Msa0118150:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_3:40384168-40384187 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_3:40384169-40384188 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_3:40384170-40384189 | None:intergenic | 55.0% | |
| TATCATCAGGTGGACCGGTG+AGG | + | chr1_3:40384564-40384583 | Msa0118150:intron | 55.0% | |
| ATCATCAGGTGGACCGGTGA+GGG | + | chr1_3:40384565-40384584 | Msa0118150:intron | 55.0% | |
| ! | TTCACGTCTAGCTCCCTCAC+CGG | - | chr1_3:40384581-40384600 | None:intergenic | 55.0% |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_3:40384642-40384661 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_3:40384654-40384673 | None:intergenic | 55.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_3:40384154-40384173 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_3:40384155-40384174 | Msa0118150:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_3:40384168-40384187 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_3:40384169-40384188 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_3:40384170-40384189 | None:intergenic | 55.0% | |
| TATCATCAGGTGGACCGGTG+AGG | + | chr1_3:40384564-40384583 | Msa0118150:intron | 55.0% | |
| ATCATCAGGTGGACCGGTGA+GGG | + | chr1_3:40384565-40384584 | Msa0118150:intron | 55.0% | |
| ! | TTCACGTCTAGCTCCCTCAC+CGG | - | chr1_3:40384581-40384600 | None:intergenic | 55.0% |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_3:40384642-40384661 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_3:40384654-40384673 | None:intergenic | 55.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_3:40384148-40384167 | None:intergenic | 60.0% | |
| CTTCGGTCGTCGCCGGAAAA+CGG | - | chr1_3:40384604-40384623 | None:intergenic | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_3:40384614-40384633 | Msa0118150:CDS | 60.0% | |
| GGTACCGTCGTCGACGTCTT+CGG | - | chr1_3:40384621-40384640 | None:intergenic | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_3:40385821-40385840 | Msa0118150:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_3:40385832-40385851 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_3:40385838-40385857 | None:intergenic | 60.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_3:40384148-40384167 | None:intergenic | 60.0% | |
| CTTCGGTCGTCGCCGGAAAA+CGG | - | chr1_3:40384604-40384623 | None:intergenic | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_3:40384614-40384633 | Msa0118150:CDS | 60.0% | |
| GGTACCGTCGTCGACGTCTT+CGG | - | chr1_3:40384621-40384640 | None:intergenic | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_3:40385821-40385840 | Msa0118150:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_3:40385832-40385851 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_3:40385838-40385857 | None:intergenic | 60.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_3:40384165-40384184 | None:intergenic | 65.0% | |
| TCGACGTCTTCGGTCGTCGC+CGG | - | chr1_3:40384611-40384630 | None:intergenic | 65.0% | |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_3:40385833-40385852 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_3:40385839-40385858 | None:intergenic | 65.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_3:40384165-40384184 | None:intergenic | 65.0% | |
| TCGACGTCTTCGGTCGTCGC+CGG | - | chr1_3:40384611-40384630 | None:intergenic | 65.0% | |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_3:40385833-40385852 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_3:40385839-40385858 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40383805 | 40386131 | 40383805 | ID=Msa0118150;Name=Msa0118150 |
| chr1_3 | mRNA | 40383805 | 40386131 | 40383805 | ID=Msa0118150-mRNA-1;Parent=Msa0118150;Name=Msa0118150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|4|256|301 |
| chr1_3 | exon | 40383805 | 40384190 | 40383805 | ID=Msa0118150-mRNA-1:exon:12281;Parent=Msa0118150-mRNA-1 |
| chr1_3 | exon | 40384573 | 40384865 | 40384573 | ID=Msa0118150-mRNA-1:exon:12282;Parent=Msa0118150-mRNA-1 |
| chr1_3 | exon | 40384961 | 40385040 | 40384961 | ID=Msa0118150-mRNA-1:exon:12283;Parent=Msa0118150-mRNA-1 |
| chr1_3 | exon | 40385575 | 40386131 | 40385575 | ID=Msa0118150-mRNA-1:exon:12284;Parent=Msa0118150-mRNA-1 |
| chr1_3 | five_prime_UTR | 40383805 | 40383958 | 40383805 | ID=Msa0118150-mRNA-1:five_prime_utr;Parent=Msa0118150-mRNA-1 |
| chr1_3 | CDS | 40383959 | 40384190 | 40383959 | ID=Msa0118150-mRNA-1:cds;Parent=Msa0118150-mRNA-1 |
| chr1_3 | CDS | 40384573 | 40384865 | 40384573 | ID=Msa0118150-mRNA-1:cds;Parent=Msa0118150-mRNA-1 |
| chr1_3 | CDS | 40384961 | 40385040 | 40384961 | ID=Msa0118150-mRNA-1:cds;Parent=Msa0118150-mRNA-1 |
| chr1_3 | CDS | 40385575 | 40385875 | 40385575 | ID=Msa0118150-mRNA-1:cds;Parent=Msa0118150-mRNA-1 |
| chr1_3 | three_prime_UTR | 40385876 | 40386131 | 40385876 | ID=Msa0118150-mRNA-1:three_prime_utr;Parent=Msa0118150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
