Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045400 | XP_012572983.1 | 42.051 | 195 | 97 | 5 | 66 | 259 | 65 | 244 | 4.79e-44 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045400 | sp|P42813|RNS1_ARATH | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.08e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045400 | 0.816155 | 6.396282e-52 | -8.615850e-47 |
| Msa0045090 | Msa0045400 | 0.911643 | 4.818733e-83 | -8.615850e-47 |
| Msa0045100 | Msa0045400 | 0.877235 | 7.391337e-69 | -8.615850e-47 |
| Msa0045120 | Msa0045400 | 0.926921 | 2.408109e-91 | -8.615850e-47 |
| Msa0045140 | Msa0045400 | 0.911756 | 4.238572e-83 | -8.615850e-47 |
| Msa0045150 | Msa0045400 | 0.911422 | 6.195105e-83 | -8.615850e-47 |
| Msa0045160 | Msa0045400 | 0.874895 | 4.720766e-68 | -8.615850e-47 |
| Msa0045190 | Msa0045400 | 0.807660 | 4.535031e-50 | -8.615850e-47 |
| Msa0045350 | Msa0045400 | 0.916780 | 1.179899e-85 | -8.615850e-47 |
| Msa0045370 | Msa0045400 | 0.941505 | 3.703513e-101 | -8.615850e-47 |
| Msa0045380 | Msa0045400 | 0.859749 | 3.335356e-63 | -8.615850e-47 |
| Msa0045400 | Msa1084980 | 0.805946 | 1.044355e-49 | -8.615850e-47 |
| Msa0045400 | Msa1085000 | 0.904188 | 1.593424e-79 | -8.615850e-47 |
| Msa0045400 | Msa1085010 | 0.863632 | 2.166873e-64 | -8.615850e-47 |
| Msa0045400 | Msa1426790 | 0.883020 | 6.384526e-71 | -8.615850e-47 |
| Msa0045400 | Msa1426820 | 0.871041 | 9.244786e-67 | -8.615850e-47 |
| Msa0045400 | Msa1426840 | 0.854474 | 1.201534e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045400 | MtrunA17_Chr6g0479301 | 41.423 | 239 | 128 | 6 | 33 | 264 | 36 | 269 | 1.88e-47 | 162 |
| Msa0045400 | MtrunA17_Chr6g0479341 | 44.444 | 198 | 97 | 8 | 70 | 264 | 71 | 258 | 1.16e-40 | 144 |
| Msa0045400 | MtrunA17_Chr5g0417371 | 34.409 | 186 | 108 | 6 | 70 | 250 | 27 | 203 | 9.53e-28 | 108 |
| Msa0045400 | MtrunA17_Chr2g0333421 | 41.905 | 105 | 61 | 0 | 155 | 259 | 12 | 116 | 1.06e-26 | 103 |
| Msa0045400 | MtrunA17_Chr3g0089081 | 34.694 | 196 | 112 | 9 | 67 | 258 | 67 | 250 | 2.99e-26 | 105 |
| Msa0045400 | MtrunA17_Chr4g0028501 | 35.233 | 193 | 99 | 9 | 69 | 258 | 20 | 189 | 4.70e-24 | 98.2 |
| Msa0045400 | MtrunA17_Chr5g0417391 | 33.871 | 186 | 109 | 6 | 70 | 250 | 29 | 205 | 9.57e-24 | 98.2 |
| Msa0045400 | MtrunA17_Chr5g0417341 | 30.851 | 188 | 113 | 6 | 70 | 250 | 28 | 205 | 5.29e-22 | 93.2 |
| Msa0045400 | MtrunA17_Chr5g0417321 | 31.016 | 187 | 113 | 6 | 70 | 250 | 28 | 204 | 1.15e-21 | 92.4 |
| Msa0045400 | MtrunA17_Chr3g0089091 | 34.158 | 202 | 117 | 9 | 61 | 258 | 70 | 259 | 1.51e-21 | 93.2 |
| Msa0045400 | MtrunA17_Chr5g0417381 | 34.409 | 186 | 108 | 6 | 70 | 250 | 28 | 204 | 5.01e-21 | 90.5 |
| Msa0045400 | MtrunA17_Chr5g0439761 | 30.108 | 186 | 115 | 6 | 65 | 247 | 15 | 188 | 5.95e-21 | 90.1 |
| Msa0045400 | MtrunA17_Chr2g0287471 | 31.868 | 182 | 106 | 7 | 79 | 258 | 166 | 331 | 3.82e-20 | 90.5 |
| Msa0045400 | MtrunA17_Chr6g0483091 | 31.000 | 200 | 123 | 7 | 65 | 258 | 20 | 210 | 1.08e-17 | 81.3 |
| Msa0045400 | MtrunA17_Chr8g0350611 | 31.633 | 196 | 115 | 8 | 67 | 258 | 101 | 281 | 6.98e-17 | 80.1 |
| Msa0045400 | MtrunA17_Chr1g0170111 | 32.212 | 208 | 124 | 8 | 61 | 258 | 89 | 289 | 1.06e-16 | 79.7 |
| Msa0045400 | MtrunA17_Chr8g0347611 | 29.412 | 187 | 115 | 7 | 70 | 247 | 43 | 221 | 7.05e-16 | 77.0 |
| Msa0045400 | MtrunA17_Chr2g0287541 | 26.289 | 194 | 121 | 8 | 67 | 258 | 4 | 177 | 1.50e-15 | 74.3 |
| Msa0045400 | MtrunA17_Chr5g0417401 | 31.383 | 188 | 112 | 7 | 70 | 250 | 28 | 205 | 1.53e-14 | 72.4 |
| Msa0045400 | MtrunA17_Chr8g0339941 | 26.738 | 187 | 116 | 7 | 66 | 247 | 412 | 582 | 1.09e-12 | 69.3 |
| Msa0045400 | MtrunA17_Chr2g0301881 | 82.051 | 39 | 7 | 0 | 262 | 300 | 304 | 342 | 5.52e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045400 | AT2G02990.1 | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.09e-23 | 98.2 |
| Msa0045400 | AT1G14220.1 | 33.333 | 186 | 110 | 6 | 70 | 250 | 28 | 204 | 1.21e-23 | 98.2 |
| Msa0045400 | AT1G26820.1 | 30.526 | 190 | 118 | 6 | 66 | 250 | 18 | 198 | 6.77e-23 | 95.9 |
| Msa0045400 | AT2G39780.1 | 27.979 | 193 | 122 | 7 | 70 | 253 | 32 | 216 | 8.55e-17 | 79.7 |
| Msa0045400 | AT1G14210.1 | 29.412 | 187 | 116 | 5 | 68 | 247 | 24 | 201 | 2.01e-16 | 78.6 |
Find 78 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCTGCTTTATTAAATT+TGG | 0.101813 | 1_1:+77331282 | None:intergenic |
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-77327138 | Msa0045400:CDS |
| CTATTAACAATTGGCTATTC+TGG | 0.179671 | 1_1:-77331245 | Msa0045400:CDS |
| GTTCAATGCCCTCAGCTTTA+AGG | 0.205857 | 1_1:+77331115 | None:intergenic |
| TTACTCTTCACCATATTTCT+TGG | 0.227128 | 1_1:-77331774 | Msa0045400:CDS |
| TTTGTCTACCTCATCGTTCT+TGG | 0.247372 | 1_1:+77331092 | None:intergenic |
| CAGATTCAATGTAGGAAGTT+TGG | 0.252441 | 1_1:-77331024 | Msa0045400:CDS |
| TCTTTATTACTGTTTGTTCT+TGG | 0.257547 | 1_1:-77327234 | Msa0045400:CDS |
| CAATATCATTCCAAGAAATA+TGG | 0.263470 | 1_1:+77331764 | None:intergenic |
| GAAGACAATGTGCTTCATTA+TGG | 0.339430 | 1_1:+77331053 | None:intergenic |
| AGATTCAATGTAGGAAGTTT+GGG | 0.340685 | 1_1:-77331023 | Msa0045400:CDS |
| CCAAGGACCTTCAAAATTCA+TGG | 0.370264 | 1_1:-77331516 | Msa0045400:CDS |
| GAAAGAAACTTACTGAAAAC+TGG | 0.383534 | 1_1:-77331305 | Msa0045400:CDS |
| TTGTCTACCTCATCGTTCTT+GGG | 0.388218 | 1_1:+77331093 | None:intergenic |
| CCATACTATGATCATGGAGT+TGG | 0.413274 | 1_1:-77331808 | None:intergenic |
| GCCTTGCCAGTGCAAGTCAT+TGG | 0.416701 | 1_1:+77331465 | None:intergenic |
| CAATTTCCATACTATGATCA+TGG | 0.416957 | 1_1:-77331814 | None:intergenic |
| ATTCAGCCCCTCGGACGAAA+TGG | 0.419706 | 1_1:-77331672 | Msa0045400:CDS |
| GGAGGTAGTGGTGATGGTGG+TGG | 0.428940 | 1_1:+77331639 | None:intergenic |
| AACAGCGTTTACTTGAAGTA+AGG | 0.430526 | 1_1:-77330996 | Msa0045400:CDS |
| GGAGGTGGAGGTAGTGGTGA+TGG | 0.438073 | 1_1:+77331633 | None:intergenic |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+77328034 | None:intergenic |
| ATCATGTATCTATTAACAAT+TGG | 0.445466 | 1_1:-77331254 | Msa0045400:CDS |
| AAATCAAATGACGGGACATA+TGG | 0.448815 | 1_1:+77331609 | None:intergenic |
| TATGGAGGAGGTGGAGGTAG+TGG | 0.449115 | 1_1:+77331627 | None:intergenic |
| CATACTATGATCATGGAGTT+GGG | 0.450184 | 1_1:-77331807 | None:intergenic |
| GCCAAATTTAATAAAGCAGC+AGG | 0.452261 | 1_1:-77331283 | Msa0045400:CDS |
| TAGTCAATGAAGACAGCGTT+TGG | 0.456859 | 1_1:-77327258 | Msa0045400:CDS |
| ACAATTGGCTATTCTGGAGT+AGG | 0.475606 | 1_1:-77331239 | Msa0045400:CDS |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+77328041 | None:intergenic |
| GGGACATATGGAGGAGGTGG+AGG | 0.489705 | 1_1:+77331621 | None:intergenic |
| GACGGGACATATGGAGGAGG+TGG | 0.492749 | 1_1:+77331618 | None:intergenic |
| TGTTTATGTTCTCTCTAACA+TGG | 0.497894 | 1_1:-77331587 | Msa0045400:CDS |
| GGTGGAGGTAGTGGTGATGG+TGG | 0.508338 | 1_1:+77331636 | None:intergenic |
| GGCTATTCTGGAGTAGGGAA+TGG | 0.510092 | 1_1:-77331233 | Msa0045400:CDS |
| TCCTACATTGAATCTGTGGC+TGG | 0.517348 | 1_1:+77331031 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-77327153 | Msa0045400:CDS |
| TCTGGAGTAGGGAATGGAAC+AGG | 0.519444 | 1_1:-77331227 | Msa0045400:CDS |
| CAATTGGCTATTCTGGAGTA+GGG | 0.525537 | 1_1:-77331238 | Msa0045400:CDS |
| CCTTCAAAATTCATGGGCTA+TGG | 0.525874 | 1_1:-77331509 | Msa0045400:CDS |
| TCTTCCGAGAGGCTGAATAG+TGG | 0.532726 | 1_1:+77331701 | None:intergenic |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 1_1:-77327093 | Msa0045400:CDS |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 1_1:+77327987 | None:intergenic |
| TCAGAACCAATGACTTGCAC+TGG | 0.534469 | 1_1:-77331471 | Msa0045400:CDS |
| CCGAGAGGCTGAATAGTGGT+AGG | 0.539520 | 1_1:+77331705 | None:intergenic |
| ACCGTCGATCTTGCAAAATG+TGG | 0.545122 | 1_1:+77331560 | None:intergenic |
| ACATAAACAAATCAAATGAC+GGG | 0.547951 | 1_1:+77331601 | None:intergenic |
| AACATAAACAAATCAAATGA+CGG | 0.553312 | 1_1:+77331600 | None:intergenic |
| ACCAATGACTTGCACTGGCA+AGG | 0.561773 | 1_1:-77331466 | Msa0045400:CDS |
| GGTAGACAAAGAAGACATGT+TGG | 0.579947 | 1_1:-77331079 | Msa0045400:CDS |
| CAAGGACCTTCAAAATTCAT+GGG | 0.588081 | 1_1:-77331515 | Msa0045400:CDS |
| GAACAGGCATGGAACATGCT+CGG | 0.589801 | 1_1:-77331211 | Msa0045400:CDS |
| CCGTCGATCTTGCAAAATGT+GGG | 0.597550 | 1_1:+77331561 | None:intergenic |
| AACTTCCTACATTGAATCTG+TGG | 0.598001 | 1_1:+77331027 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 1_1:-77327987 | Msa0045400:intron |
| TAACTCACCATGTTTATGCA+AGG | 0.601403 | 1_1:-77331731 | Msa0045400:CDS |
| AACTCACCATGTTTATGCAA+GGG | 0.605338 | 1_1:-77331730 | Msa0045400:CDS |
| CGAGAGGCTGAATAGTGGTA+GGG | 0.610425 | 1_1:+77331706 | None:intergenic |
| TCAAATGACGGGACATATGG+AGG | 0.613975 | 1_1:+77331612 | None:intergenic |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 1_1:+77327992 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+77327138 | None:intergenic |
| AGTAGGGAATGGAACAGGCA+TGG | 0.625843 | 1_1:-77331222 | Msa0045400:CDS |
| ATGAACTACCTTAAAGCTGA+GGG | 0.629017 | 1_1:-77331123 | Msa0045400:CDS |
| CATGAACTACCTTAAAGCTG+AGG | 0.634907 | 1_1:-77331124 | Msa0045400:CDS |
| AATGTATAGATCAAGTGCCA+AGG | 0.635818 | 1_1:-77331533 | Msa0045400:CDS |
| TCCAGCCACAGATTCAATGT+AGG | 0.640140 | 1_1:-77331032 | Msa0045400:CDS |
| AGAAATACTATTCAGCCCCT+CGG | 0.644925 | 1_1:-77331681 | Msa0045400:CDS |
| CAAAGTATTCGTTTGCATCG+AGG | 0.647560 | 1_1:+77331181 | None:intergenic |
| TAGGGTCCCTTGCATAAACA+TGG | 0.652145 | 1_1:+77331724 | None:intergenic |
| TGCAAACGAATACTTTGCAG+TGG | 0.654740 | 1_1:-77331175 | Msa0045400:CDS |
| CCTACCACTATTCAGCCTCT+CGG | 0.656651 | 1_1:-77331705 | Msa0045400:CDS |
| AATGACGGGACATATGGAGG+AGG | 0.664965 | 1_1:+77331615 | None:intergenic |
| TCGATCTTGCAAAATGTGGG+AGG | 0.671506 | 1_1:+77331564 | None:intergenic |
| CAGGCATGGAACATGCTCGG+CGG | 0.681296 | 1_1:-77331208 | Msa0045400:CDS |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+77328042 | None:intergenic |
| AATTCTAGAGTGATATACCA+AGG | 0.688891 | 1_1:+77327076 | None:intergenic |
| TGAATAGTATTTCTTCCGAG+AGG | 0.694559 | 1_1:+77331690 | None:intergenic |
| CATTGAACCCAAGAACGATG+AGG | 0.720821 | 1_1:-77331100 | Msa0045400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATACTTGTT+TGG | - | chr1_1:77328057-77328076 | Msa0045400:CDS | 10.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:77328161-77328180 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr1_1:77329240-77329259 | Msa0045400:intron | 10.0% |
| !!! | AAATTTGTCATATAGTTTTA+CGG | + | chr1_1:77327732-77327751 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:77328256-77328275 | Msa0045400:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:77328938-77328957 | Msa0045400:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr1_1:77329239-77329258 | Msa0045400:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr1_1:77329398-77329417 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr1_1:77329399-77329418 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr1_1:77329744-77329763 | Msa0045400:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:77330706-77330725 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:77331006-77331025 | Msa0045400:CDS | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:77331007-77331026 | Msa0045400:CDS | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:77331042-77331061 | Msa0045400:CDS | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:77331198-77331217 | None:intergenic | 15.0% |
| !! | AACATAAACAAATCAAATGA+CGG | + | chr1_1:77327284-77327303 | None:intergenic | 20.0% |
| !! | ATCATGTATCTATTAACAAT+TGG | - | chr1_1:77327627-77327646 | Msa0045400:intron | 20.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:77328351-77328370 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:77328418-77328437 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:77328620-77328639 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr1_1:77329397-77329416 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr1_1:77329648-77329667 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr1_1:77329649-77329668 | Msa0045400:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr1_1:77329815-77329834 | Msa0045400:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr1_1:77330002-77330021 | Msa0045400:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr1_1:77330003-77330022 | Msa0045400:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr1_1:77330775-77330794 | None:intergenic | 20.0% |
| ! | CAATATCATTCCAAGAAATA+TGG | + | chr1_1:77327120-77327139 | None:intergenic | 25.0% |
| ! | ACATAAACAAATCAAATGAC+GGG | + | chr1_1:77327283-77327302 | None:intergenic | 25.0% |
| !!! | GGTTCTGAGTTTTTTTTATT+GGG | + | chr1_1:77327398-77327417 | None:intergenic | 25.0% |
| !!! | TGGTTCTGAGTTTTTTTTAT+TGG | + | chr1_1:77327399-77327418 | None:intergenic | 25.0% |
| !! | TCTTCAGATTCTGAAAAATT+CGG | - | chr1_1:77327553-77327572 | Msa0045400:intron | 25.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:77328416-77328435 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:77328417-77328436 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:77328452-77328471 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:77328453-77328472 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:77328550-77328569 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:77328551-77328570 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:77328621-77328640 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:77328619-77328638 | Msa0045400:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:77328703-77328722 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr1_1:77329245-77329264 | Msa0045400:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr1_1:77329289-77329308 | Msa0045400:intron | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr1_1:77329724-77329743 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr1_1:77329806-77329825 | Msa0045400:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr1_1:77329903-77329922 | Msa0045400:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr1_1:77329942-77329961 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr1_1:77329943-77329962 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr1_1:77329977-77329996 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr1_1:77330169-77330188 | Msa0045400:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr1_1:77330326-77330345 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr1_1:77330413-77330432 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr1_1:77330414-77330433 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr1_1:77330437-77330456 | Msa0045400:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr1_1:77330461-77330480 | Msa0045400:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr1_1:77330462-77330481 | Msa0045400:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr1_1:77330511-77330530 | Msa0045400:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr1_1:77330644-77330663 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr1_1:77330645-77330664 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr1_1:77330776-77330795 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:77330945-77330964 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr1_1:77330989-77331008 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr1_1:77331045-77331064 | Msa0045400:CDS | 25.0% |
| ! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:77331326-77331345 | None:intergenic | 25.0% |
| ! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:77331437-77331456 | None:intergenic | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:77331613-77331632 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:77331647-77331666 | Msa0045400:CDS | 25.0% |
| TTACTCTTCACCATATTTCT+TGG | - | chr1_1:77327107-77327126 | Msa0045400:CDS | 30.0% | |
| TGTTTATGTTCTCTCTAACA+TGG | - | chr1_1:77327294-77327313 | Msa0045400:intron | 30.0% | |
| ! | CTTCAGATTCTGAAAAATTC+GGG | - | chr1_1:77327554-77327573 | Msa0045400:intron | 30.0% |
| GAAAGAAACTTACTGAAAAC+TGG | - | chr1_1:77327576-77327595 | Msa0045400:intron | 30.0% | |
| !! | TCCTGCTGCTTTATTAAATT+TGG | + | chr1_1:77327602-77327621 | None:intergenic | 30.0% |
| CTATTAACAATTGGCTATTC+TGG | - | chr1_1:77327636-77327655 | Msa0045400:intron | 30.0% | |
| AGATTCAATGTAGGAAGTTT+GGG | - | chr1_1:77327858-77327877 | Msa0045400:intron | 30.0% | |
| TCCAATTTAAATACGATGAG+TGG | - | chr1_1:77328091-77328110 | Msa0045400:intron | 30.0% | |
| TCCACTCATCGTATTTAAAT+TGG | + | chr1_1:77328095-77328114 | None:intergenic | 30.0% | |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:77328486-77328505 | Msa0045400:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:77328519-77328538 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:77328549-77328568 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:77328595-77328614 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:77328596-77328615 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:77328658-77328677 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:77328979-77328998 | Msa0045400:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:77329044-77329063 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:77329067-77329086 | Msa0045400:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr1_1:77329553-77329572 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr1_1:77329686-77329705 | Msa0045400:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr1_1:77329770-77329789 | Msa0045400:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr1_1:77329785-77329804 | Msa0045400:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr1_1:77329932-77329951 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr1_1:77329972-77329991 | Msa0045400:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr1_1:77330114-77330133 | Msa0045400:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr1_1:77330172-77330191 | Msa0045400:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr1_1:77330242-77330261 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr1_1:77330436-77330455 | Msa0045400:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr1_1:77330438-77330457 | Msa0045400:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr1_1:77330473-77330492 | Msa0045400:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr1_1:77330474-77330493 | Msa0045400:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr1_1:77330509-77330528 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr1_1:77330510-77330529 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr1_1:77330510-77330529 | Msa0045400:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr1_1:77330512-77330531 | Msa0045400:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr1_1:77330643-77330662 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:77330850-77330869 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:77330851-77330870 | Msa0045400:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:77331179-77331198 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:77331228-77331247 | Msa0045400:CDS | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:77331411-77331430 | None:intergenic | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:77331449-77331468 | Msa0045400:CDS | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:77331472-77331491 | Msa0045400:CDS | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:77331473-77331492 | Msa0045400:CDS | 30.0% | |
| ! | CTATGATTTTCTCTGAACTT+TGG | - | chr1_1:77331558-77331577 | Msa0045400:CDS | 30.0% |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:77331772-77331791 | None:intergenic | 30.0% |
| TAACTCACCATGTTTATGCA+AGG | - | chr1_1:77327150-77327169 | Msa0045400:CDS | 35.0% | |
| AACTCACCATGTTTATGCAA+GGG | - | chr1_1:77327151-77327170 | Msa0045400:CDS | 35.0% | |
| TGAATAGTATTTCTTCCGAG+AGG | + | chr1_1:77327194-77327213 | None:intergenic | 35.0% | |
| ! | AAATCAAATGACGGGACATA+TGG | + | chr1_1:77327275-77327294 | None:intergenic | 35.0% |
| AATGTATAGATCAAGTGCCA+AGG | - | chr1_1:77327348-77327367 | Msa0045400:intron | 35.0% | |
| CAAGGACCTTCAAAATTCAT+GGG | - | chr1_1:77327366-77327385 | Msa0045400:intron | 35.0% | |
| GCCAAATTTAATAAAGCAGC+AGG | - | chr1_1:77327598-77327617 | Msa0045400:intron | 35.0% | |
| ATGAACTACCTTAAAGCTGA+GGG | - | chr1_1:77327758-77327777 | Msa0045400:intron | 35.0% | |
| GAAGACAATGTGCTTCATTA+TGG | + | chr1_1:77327831-77327850 | None:intergenic | 35.0% | |
| AACTTCCTACATTGAATCTG+TGG | + | chr1_1:77327857-77327876 | None:intergenic | 35.0% | |
| CAGATTCAATGTAGGAAGTT+TGG | - | chr1_1:77327857-77327876 | Msa0045400:intron | 35.0% | |
| AACAGCGTTTACTTGAAGTA+AGG | - | chr1_1:77327885-77327904 | Msa0045400:intron | 35.0% | |
| ! | CTGTCACAACTTTTGTATGT+CGG | + | chr1_1:77327935-77327954 | None:intergenic | 35.0% |
| CAGAATATTATGCTCTTCTC+TGG | + | chr1_1:77327974-77327993 | None:intergenic | 35.0% | |
| TTTAAATACGATGAGTGGAG+TGG | - | chr1_1:77328096-77328115 | Msa0045400:intron | 35.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:77328483-77328502 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:77328561-77328580 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:77328648-77328667 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:77328713-77328732 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:77328896-77328915 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:77328967-77328986 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:77328968-77328987 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:77329070-77329089 | Msa0045400:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr1_1:77329183-77329202 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr1_1:77329431-77329450 | Msa0045400:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr1_1:77329525-77329544 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr1_1:77329526-77329545 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr1_1:77329531-77329550 | Msa0045400:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr1_1:77329601-77329620 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr1_1:77329602-77329621 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr1_1:77329603-77329622 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr1_1:77329628-77329647 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr1_1:77329637-77329656 | Msa0045400:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr1_1:77329822-77329841 | Msa0045400:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr1_1:77329906-77329925 | Msa0045400:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr1_1:77329936-77329955 | Msa0045400:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr1_1:77330033-77330052 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr1_1:77330034-77330053 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr1_1:77330063-77330082 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr1_1:77330070-77330089 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr1_1:77330099-77330118 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr1_1:77330111-77330130 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr1_1:77330113-77330132 | Msa0045400:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr1_1:77330236-77330255 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr1_1:77330247-77330266 | Msa0045400:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr1_1:77330248-77330267 | Msa0045400:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr1_1:77330256-77330275 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr1_1:77330393-77330412 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr1_1:77330394-77330413 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr1_1:77330395-77330414 | Msa0045400:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:77331365-77331384 | Msa0045400:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:77331366-77331385 | Msa0045400:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:77331461-77331480 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:77331714-77331733 | Msa0045400:CDS | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr1_1:77331788-77331807 | Msa0045400:CDS | 35.0% | |
| AGAAATACTATTCAGCCCCT+CGG | - | chr1_1:77327200-77327219 | Msa0045400:CDS | 40.0% | |
| ! | TCTTTTTCCATTTCGTCCGA+GGG | + | chr1_1:77327219-77327238 | None:intergenic | 40.0% |
| !! | CCATGAATTTTGAAGGTCCT+TGG | + | chr1_1:77327368-77327387 | None:intergenic | 40.0% |
| CCAAGGACCTTCAAAATTCA+TGG | - | chr1_1:77327365-77327384 | Msa0045400:intron | 40.0% | |
| ! | CCATAGCCCATGAATTTTGA+AGG | + | chr1_1:77327375-77327394 | None:intergenic | 40.0% |
| ! | CCTTCAAAATTCATGGGCTA+TGG | - | chr1_1:77327372-77327391 | Msa0045400:intron | 40.0% |
| !! | ACAATTGGCTATTCTGGAGT+AGG | - | chr1_1:77327642-77327661 | Msa0045400:intron | 40.0% |
| !! | CAATTGGCTATTCTGGAGTA+GGG | - | chr1_1:77327643-77327662 | Msa0045400:intron | 40.0% |
| ! | CAAAGTATTCGTTTGCATCG+AGG | + | chr1_1:77327703-77327722 | None:intergenic | 40.0% |
| TGCAAACGAATACTTTGCAG+TGG | - | chr1_1:77327706-77327725 | Msa0045400:intron | 40.0% | |
| CATGAACTACCTTAAAGCTG+AGG | - | chr1_1:77327757-77327776 | Msa0045400:intron | 40.0% | |
| TTGTCTACCTCATCGTTCTT+GGG | + | chr1_1:77327791-77327810 | None:intergenic | 40.0% | |
| TTTGTCTACCTCATCGTTCT+TGG | + | chr1_1:77327792-77327811 | None:intergenic | 40.0% | |
| GGTAGACAAAGAAGACATGT+TGG | - | chr1_1:77327802-77327821 | Msa0045400:intron | 40.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:77328580-77328599 | Msa0045400:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:77328589-77328608 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:77328674-77328693 | Msa0045400:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:77328688-77328707 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:77328849-77328868 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:77328850-77328869 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr1_1:77329161-77329180 | Msa0045400:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr1_1:77329316-77329335 | Msa0045400:intron | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr1_1:77329321-77329340 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr1_1:77329841-77329860 | Msa0045400:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr1_1:77329855-77329874 | Msa0045400:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr1_1:77330030-77330049 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr1_1:77330059-77330078 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr1_1:77330100-77330119 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr1_1:77330518-77330537 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr1_1:77330519-77330538 | Msa0045400:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr1_1:77330610-77330629 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr1_1:77330617-77330636 | Msa0045400:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr1_1:77330761-77330780 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:77330842-77330861 | None:intergenic | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:77331623-77331642 | Msa0045400:CDS | 40.0% | |
| TAGGGTCCCTTGCATAAACA+TGG | + | chr1_1:77327160-77327179 | None:intergenic | 45.0% | |
| ! | CTTTTTCCATTTCGTCCGAG+GGG | + | chr1_1:77327218-77327237 | None:intergenic | 45.0% |
| ! | GTCTTTTTCCATTTCGTCCG+AGG | + | chr1_1:77327220-77327239 | None:intergenic | 45.0% |
| ! | TCAAATGACGGGACATATGG+AGG | + | chr1_1:77327272-77327291 | None:intergenic | 45.0% |
| TCGATCTTGCAAAATGTGGG+AGG | + | chr1_1:77327320-77327339 | None:intergenic | 45.0% | |
| CCGTCGATCTTGCAAAATGT+GGG | + | chr1_1:77327323-77327342 | None:intergenic | 45.0% | |
| ! | CCCACATTTTGCAAGATCGA+CGG | - | chr1_1:77327320-77327339 | Msa0045400:intron | 45.0% |
| ACCGTCGATCTTGCAAAATG+TGG | + | chr1_1:77327324-77327343 | None:intergenic | 45.0% | |
| ! | TCAGAACCAATGACTTGCAC+TGG | - | chr1_1:77327410-77327429 | Msa0045400:intron | 45.0% |
| GTTCAATGCCCTCAGCTTTA+AGG | + | chr1_1:77327769-77327788 | None:intergenic | 45.0% | |
| CATTGAACCCAAGAACGATG+AGG | - | chr1_1:77327781-77327800 | Msa0045400:intron | 45.0% | |
| TCCAGCCACAGATTCAATGT+AGG | - | chr1_1:77327849-77327868 | Msa0045400:intron | 45.0% | |
| TCCTACATTGAATCTGTGGC+TGG | + | chr1_1:77327853-77327872 | None:intergenic | 45.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:77328409-77328428 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:77328469-77328488 | Msa0045400:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:77328512-77328531 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:77328695-77328714 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:77328802-77328821 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:77328812-77328831 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:77328821-77328840 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:77328840-77328859 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:77328874-77328893 | Msa0045400:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:77329102-77329121 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:77329103-77329122 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr1_1:77329179-77329198 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr1_1:77329180-77329199 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr1_1:77329385-77329404 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr1_1:77329836-77329855 | Msa0045400:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr1_1:77330095-77330114 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr1_1:77330096-77330115 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr1_1:77330522-77330541 | Msa0045400:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr1_1:77330523-77330542 | Msa0045400:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr1_1:77330633-77330652 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:77330843-77330862 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr1_1:77330897-77330916 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr1_1:77330894-77330913 | Msa0045400:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:77330901-77330920 | Msa0045400:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:77331094-77331113 | None:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:77331309-77331328 | None:intergenic | 45.0% |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:77331493-77331512 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:77331746-77331765 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:77331743-77331762 | Msa0045400:CDS | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:77331746-77331765 | Msa0045400:CDS | 45.0% |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr1_1:77329734-77329753 | None:intergenic | 5.0% |
| CGAGAGGCTGAATAGTGGTA+GGG | + | chr1_1:77327178-77327197 | None:intergenic | 50.0% | |
| CCTACCACTATTCAGCCTCT+CGG | - | chr1_1:77327176-77327195 | Msa0045400:CDS | 50.0% | |
| TCTTCCGAGAGGCTGAATAG+TGG | + | chr1_1:77327183-77327202 | None:intergenic | 50.0% | |
| ! | AATGACGGGACATATGGAGG+AGG | + | chr1_1:77327269-77327288 | None:intergenic | 50.0% |
| ! | ACCAATGACTTGCACTGGCA+AGG | - | chr1_1:77327415-77327434 | Msa0045400:intron | 50.0% |
| !! | GGCTATTCTGGAGTAGGGAA+TGG | - | chr1_1:77327648-77327667 | Msa0045400:intron | 50.0% |
| ! | TCTGGAGTAGGGAATGGAAC+AGG | - | chr1_1:77327654-77327673 | Msa0045400:intron | 50.0% |
| AGTAGGGAATGGAACAGGCA+TGG | - | chr1_1:77327659-77327678 | Msa0045400:intron | 50.0% | |
| GAACAGGCATGGAACATGCT+CGG | - | chr1_1:77327670-77327689 | Msa0045400:intron | 50.0% | |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:77328408-77328427 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:77328725-77328744 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:77328761-77328780 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:77328772-77328791 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:77328773-77328792 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:77328803-77328822 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:77328806-77328825 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:77329085-77329104 | Msa0045400:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr1_1:77330052-77330071 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr1_1:77330053-77330072 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr1_1:77330094-77330113 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr1_1:77330892-77330911 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:77331076-77331095 | Msa0045400:CDS | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:77331728-77331747 | Msa0045400:CDS | 50.0% |
| CCGAGAGGCTGAATAGTGGT+AGG | + | chr1_1:77327179-77327198 | None:intergenic | 55.0% | |
| ATTCAGCCCCTCGGACGAAA+TGG | - | chr1_1:77327209-77327228 | Msa0045400:CDS | 55.0% | |
| TATGGAGGAGGTGGAGGTAG+TGG | + | chr1_1:77327257-77327276 | None:intergenic | 55.0% | |
| GCCTTGCCAGTGCAAGTCAT+TGG | + | chr1_1:77327419-77327438 | None:intergenic | 55.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:77328726-77328745 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:77328758-77328777 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:77328783-77328802 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr1_1:77330051-77330070 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr1_1:77330088-77330107 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr1_1:77330091-77330110 | Msa0045400:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr1_1:77331059-77331078 | Msa0045400:CDS | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:77331075-77331094 | Msa0045400:CDS | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:77331083-77331102 | Msa0045400:CDS | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:77331084-77331103 | Msa0045400:CDS | 55.0% |
| !! | GGAGGTAGTGGTGATGGTGG+TGG | + | chr1_1:77327245-77327264 | None:intergenic | 60.0% |
| !! | GGTGGAGGTAGTGGTGATGG+TGG | + | chr1_1:77327248-77327267 | None:intergenic | 60.0% |
| ! | GGAGGTGGAGGTAGTGGTGA+TGG | + | chr1_1:77327251-77327270 | None:intergenic | 60.0% |
| GGGACATATGGAGGAGGTGG+AGG | + | chr1_1:77327263-77327282 | None:intergenic | 60.0% | |
| GACGGGACATATGGAGGAGG+TGG | + | chr1_1:77327266-77327285 | None:intergenic | 60.0% | |
| CAGGCATGGAACATGCTCGG+CGG | - | chr1_1:77327673-77327692 | Msa0045400:intron | 60.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:77328403-77328422 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:77328399-77328418 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:77328400-77328419 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:77328734-77328753 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:77328754-77328773 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:77328755-77328774 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:77328397-77328416 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:77328398-77328417 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:77328742-77328761 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:77328743-77328762 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:77328751-77328770 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77327080 | 77331823 | 77327080 | ID=Msa0045400;Name=Msa0045400 |
| chr1_1 | mRNA | 77327080 | 77331823 | 77327080 | ID=Msa0045400-mRNA-1;Parent=Msa0045400;Name=Msa0045400-mRNA-1;_AED=0.87;_eAED=0.93;_QI=0|0|0.25|0.5|0.66|1|4|0|365 |
| chr1_1 | exon | 77331440 | 77331823 | 77331440 | ID=Msa0045400-mRNA-1:exon:26431;Parent=Msa0045400-mRNA-1 |
| chr1_1 | exon | 77330950 | 77331343 | 77330950 | ID=Msa0045400-mRNA-1:exon:26430;Parent=Msa0045400-mRNA-1 |
| chr1_1 | exon | 77327988 | 77328109 | 77327988 | ID=Msa0045400-mRNA-1:exon:26429;Parent=Msa0045400-mRNA-1 |
| chr1_1 | exon | 77327080 | 77327277 | 77327080 | ID=Msa0045400-mRNA-1:exon:26428;Parent=Msa0045400-mRNA-1 |
| chr1_1 | CDS | 77331440 | 77331823 | 77331440 | ID=Msa0045400-mRNA-1:cds;Parent=Msa0045400-mRNA-1 |
| chr1_1 | CDS | 77330950 | 77331343 | 77330950 | ID=Msa0045400-mRNA-1:cds;Parent=Msa0045400-mRNA-1 |
| chr1_1 | CDS | 77327988 | 77328109 | 77327988 | ID=Msa0045400-mRNA-1:cds;Parent=Msa0045400-mRNA-1 |
| chr1_1 | CDS | 77327080 | 77327277 | 77327080 | ID=Msa0045400-mRNA-1:cds;Parent=Msa0045400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
