Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049630 | sp|P47927|AP2_ARATH | 52.710 | 535 | 134 | 18 | 1 | 519 | 1 | 432 | 1.05e-128 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049630 | A0A072UR04 | 95.802 | 524 | 15 | 4 | 1 | 519 | 1 | 522 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0049630 | TF | AP2/ERF-AP2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049630 | Msa0054730 | -0.819741 | 9.901894e-53 | -8.615850e-47 |
| Msa0049630 | Msa0086760 | 0.800243 | 1.579242e-48 | -8.615850e-47 |
| Msa0049630 | Msa0127650 | 0.807078 | 6.026182e-50 | -8.615850e-47 |
| Msa0049630 | Msa0241390 | 0.814189 | 1.748980e-51 | -8.615850e-47 |
| Msa0049630 | Msa0280090 | 0.802252 | 6.126623e-49 | -8.615850e-47 |
| Msa0049630 | Msa0309770 | 0.804173 | 2.452508e-49 | -8.615850e-47 |
| Msa0049630 | Msa0345970 | 0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa0049630 | Msa0440750 | 0.809539 | 1.800295e-50 | -8.615850e-47 |
| Msa0049630 | Msa0477080 | 0.808580 | 2.888041e-50 | -8.615850e-47 |
| Msa0049630 | Msa0580260 | 0.804848 | 1.773536e-49 | -8.615850e-47 |
| Msa0049630 | Msa0602390 | 0.806284 | 8.863408e-50 | -8.615850e-47 |
| Msa0049630 | Msa0607050 | 0.813486 | 2.497999e-51 | -8.615850e-47 |
| Msa0049630 | Msa0661190 | -0.803609 | 3.212542e-49 | -8.615850e-47 |
| Msa0049630 | Msa0895120 | 0.804001 | 2.663191e-49 | -8.615850e-47 |
| Msa0049630 | Msa0938220 | 0.817131 | 3.865368e-52 | -8.615850e-47 |
| Msa0049630 | Msa0975340 | 0.817632 | 2.981127e-52 | -8.615850e-47 |
| Msa0049630 | Msa1081980 | 0.816535 | 5.260487e-52 | -8.615850e-47 |
| Msa0049630 | Msa1204090 | 0.865242 | 6.806907e-65 | -8.615850e-47 |
| Msa0049630 | Msa1228590 | 0.810601 | 1.062850e-50 | -8.615850e-47 |
| Msa0049630 | Msa1256250 | 0.953728 | 1.446325e-111 | -8.615850e-47 |
| Msa0049630 | Msa1432420 | 0.800601 | 1.334988e-48 | -8.615850e-47 |
| Msa0049630 | Msa1452240 | 0.809564 | 1.777837e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049630 | MtrunA17_Chr4g0053181 | 95.611 | 524 | 15 | 5 | 1 | 519 | 1 | 521 | 0.0 | 1025 |
| Msa0049630 | MtrunA17_Chr5g0401891 | 69.541 | 545 | 106 | 20 | 1 | 519 | 1 | 511 | 0.0 | 594 |
| Msa0049630 | MtrunA17_Chr7g0263581 | 78.261 | 207 | 43 | 1 | 144 | 350 | 110 | 314 | 1.83e-95 | 298 |
| Msa0049630 | MtrunA17_Chr4g0030191 | 56.604 | 318 | 96 | 6 | 40 | 356 | 36 | 312 | 1.43e-93 | 293 |
| Msa0049630 | MtrunA17_Chr2g0325911 | 53.016 | 315 | 105 | 6 | 40 | 353 | 25 | 297 | 5.37e-82 | 262 |
| Msa0049630 | MtrunA17_Chr4g0054351 | 54.971 | 171 | 66 | 3 | 170 | 329 | 310 | 480 | 1.27e-52 | 189 |
| Msa0049630 | MtrunA17_Chr5g0400871 | 54.386 | 171 | 67 | 3 | 170 | 329 | 249 | 419 | 1.70e-51 | 184 |
| Msa0049630 | MtrunA17_Chr4g0072291 | 55.030 | 169 | 65 | 3 | 170 | 327 | 159 | 327 | 2.83e-51 | 182 |
| Msa0049630 | MtrunA17_Chr7g0216601 | 52.976 | 168 | 68 | 2 | 170 | 326 | 65 | 232 | 1.28e-50 | 178 |
| Msa0049630 | MtrunA17_Chr4g0032631 | 43.277 | 238 | 105 | 6 | 170 | 387 | 163 | 390 | 5.62e-50 | 179 |
| Msa0049630 | MtrunA17_Chr7g0249621 | 53.846 | 169 | 67 | 3 | 170 | 327 | 259 | 427 | 1.68e-49 | 181 |
| Msa0049630 | MtrunA17_Chr3g0135161 | 54.167 | 168 | 69 | 3 | 170 | 329 | 310 | 477 | 3.24e-49 | 179 |
| Msa0049630 | MtrunA17_Chr8g0355191 | 47.418 | 213 | 90 | 5 | 146 | 340 | 32 | 240 | 4.16e-48 | 172 |
| Msa0049630 | MtrunA17_Chr3g0126151 | 80.851 | 94 | 18 | 0 | 211 | 304 | 47 | 140 | 4.36e-48 | 163 |
| Msa0049630 | MtrunA17_Chr8g0343851 | 50.538 | 186 | 83 | 4 | 151 | 327 | 228 | 413 | 4.86e-48 | 175 |
| Msa0049630 | MtrunA17_Chr1g0170761 | 43.218 | 317 | 123 | 13 | 39 | 350 | 34 | 298 | 8.17e-48 | 170 |
| Msa0049630 | MtrunA17_Chr1g0152161 | 52.976 | 168 | 71 | 3 | 170 | 329 | 312 | 479 | 1.17e-47 | 175 |
| Msa0049630 | MtrunA17_Chr4g0002011 | 49.519 | 208 | 84 | 4 | 164 | 350 | 30 | 237 | 3.98e-47 | 166 |
| Msa0049630 | MtrunA17_Chr6g0452911 | 47.396 | 192 | 83 | 4 | 174 | 347 | 65 | 256 | 9.27e-47 | 167 |
| Msa0049630 | MtrunA17_Chr2g0328971 | 46.078 | 204 | 86 | 5 | 170 | 362 | 167 | 357 | 3.95e-46 | 169 |
| Msa0049630 | MtrunA17_Chr4g0073521 | 50.000 | 174 | 73 | 4 | 164 | 326 | 41 | 211 | 1.53e-45 | 163 |
| Msa0049630 | MtrunA17_Chr8g0355181 | 46.829 | 205 | 95 | 3 | 151 | 341 | 37 | 241 | 2.55e-44 | 160 |
| Msa0049630 | MtrunA17_Chr5g0412151 | 53.801 | 171 | 68 | 3 | 170 | 329 | 224 | 394 | 5.11e-43 | 160 |
| Msa0049630 | MtrunA17_Chr8g0367311 | 44.330 | 194 | 102 | 2 | 197 | 389 | 19 | 207 | 9.31e-43 | 152 |
| Msa0049630 | MtrunA17_Chr8g0362541 | 37.671 | 292 | 135 | 8 | 170 | 423 | 69 | 351 | 1.25e-38 | 145 |
| Msa0049630 | MtrunA17_Chr7g0257361 | 49.231 | 130 | 52 | 2 | 170 | 289 | 57 | 182 | 1.41e-24 | 105 |
| Msa0049630 | MtrunA17_Chr2g0305821 | 44.800 | 125 | 57 | 3 | 160 | 272 | 32 | 156 | 1.50e-18 | 82.8 |
| Msa0049630 | MtrunA17_Chr2g0305831 | 60.000 | 55 | 22 | 0 | 272 | 326 | 5 | 59 | 7.88e-14 | 70.9 |
| Msa0049630 | MtrunA17_Chr8g0375031 | 46.914 | 81 | 38 | 3 | 173 | 249 | 124 | 203 | 3.06e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049630 | AT4G36920.1 | 52.710 | 535 | 134 | 18 | 1 | 519 | 1 | 432 | 1.07e-129 | 384 |
| Msa0049630 | AT4G36920.2 | 52.710 | 535 | 134 | 18 | 1 | 519 | 1 | 432 | 1.07e-129 | 384 |
| Msa0049630 | AT5G67180.1 | 69.202 | 263 | 56 | 3 | 93 | 355 | 39 | 276 | 4.09e-102 | 311 |
| Msa0049630 | AT5G67180.2 | 69.466 | 262 | 55 | 3 | 94 | 355 | 40 | 276 | 4.74e-102 | 309 |
| Msa0049630 | AT5G67180.3 | 71.610 | 236 | 44 | 2 | 94 | 329 | 40 | 252 | 8.19e-96 | 292 |
| Msa0049630 | AT2G28550.3 | 53.258 | 353 | 138 | 7 | 43 | 391 | 40 | 369 | 6.12e-92 | 288 |
| Msa0049630 | AT5G67180.4 | 69.545 | 220 | 42 | 4 | 93 | 312 | 39 | 233 | 6.92e-78 | 245 |
| Msa0049630 | AT2G28550.1 | 49.575 | 353 | 136 | 8 | 43 | 391 | 40 | 354 | 6.46e-77 | 249 |
| Msa0049630 | AT2G28550.4 | 67.606 | 213 | 51 | 4 | 95 | 303 | 85 | 283 | 2.36e-76 | 244 |
| Msa0049630 | AT2G28550.2 | 66.162 | 198 | 49 | 4 | 95 | 288 | 85 | 268 | 7.62e-66 | 214 |
| Msa0049630 | AT2G28550.6 | 66.162 | 198 | 49 | 4 | 95 | 288 | 85 | 268 | 7.62e-66 | 214 |
| Msa0049630 | AT5G60120.4 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 4.60e-63 | 211 |
| Msa0049630 | AT5G60120.3 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 4.60e-63 | 211 |
| Msa0049630 | AT5G60120.5 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 4.60e-63 | 211 |
| Msa0049630 | AT5G60120.6 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 1.95e-62 | 212 |
| Msa0049630 | AT5G60120.1 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 2.74e-62 | 212 |
| Msa0049630 | AT5G60120.2 | 61.111 | 198 | 54 | 2 | 157 | 354 | 144 | 318 | 6.16e-62 | 211 |
| Msa0049630 | AT2G28550.5 | 57.426 | 202 | 69 | 2 | 190 | 391 | 4 | 188 | 1.58e-55 | 188 |
| Msa0049630 | AT5G57390.2 | 41.860 | 301 | 131 | 9 | 151 | 411 | 63 | 359 | 1.01e-54 | 190 |
| Msa0049630 | AT5G57390.1 | 41.860 | 301 | 131 | 9 | 151 | 411 | 181 | 477 | 8.11e-54 | 191 |
| Msa0049630 | AT1G72570.1 | 53.254 | 169 | 68 | 3 | 170 | 327 | 220 | 388 | 3.90e-51 | 180 |
| Msa0049630 | AT4G37750.1 | 53.254 | 169 | 68 | 2 | 170 | 327 | 280 | 448 | 1.93e-50 | 181 |
| Msa0049630 | AT4G37750.1 | 44.304 | 79 | 42 | 1 | 160 | 236 | 372 | 450 | 4.45e-11 | 65.9 |
| Msa0049630 | AT1G51190.1 | 53.846 | 169 | 67 | 3 | 170 | 327 | 187 | 355 | 2.56e-50 | 181 |
| Msa0049630 | AT3G20840.1 | 52.663 | 169 | 69 | 3 | 170 | 327 | 178 | 346 | 5.06e-49 | 178 |
| Msa0049630 | AT5G17430.2 | 50.562 | 178 | 77 | 3 | 161 | 327 | 136 | 313 | 4.50e-48 | 174 |
| Msa0049630 | AT5G17430.1 | 50.562 | 178 | 77 | 3 | 161 | 327 | 198 | 375 | 8.10e-48 | 175 |
| Msa0049630 | AT2G39250.2 | 76.636 | 107 | 25 | 0 | 161 | 267 | 96 | 202 | 3.51e-47 | 164 |
| Msa0049630 | AT2G39250.1 | 52.020 | 198 | 63 | 4 | 161 | 357 | 96 | 262 | 1.15e-46 | 166 |
| Msa0049630 | AT5G65510.4 | 51.546 | 194 | 80 | 5 | 170 | 349 | 170 | 363 | 2.32e-44 | 162 |
| Msa0049630 | AT5G65510.2 | 51.546 | 194 | 80 | 5 | 170 | 349 | 228 | 421 | 4.55e-44 | 163 |
| Msa0049630 | AT5G65510.1 | 51.546 | 194 | 80 | 5 | 170 | 349 | 228 | 421 | 4.55e-44 | 163 |
| Msa0049630 | AT3G54320.3 | 53.488 | 172 | 69 | 2 | 170 | 330 | 62 | 233 | 6.73e-44 | 161 |
| Msa0049630 | AT3G54320.1 | 53.488 | 172 | 69 | 2 | 170 | 330 | 62 | 233 | 9.53e-44 | 160 |
| Msa0049630 | AT3G54990.2 | 72.000 | 125 | 35 | 0 | 155 | 279 | 104 | 228 | 3.16e-43 | 154 |
| Msa0049630 | AT5G10510.7 | 50.739 | 203 | 84 | 6 | 170 | 357 | 227 | 428 | 4.27e-43 | 161 |
| Msa0049630 | AT5G10510.5 | 50.739 | 203 | 84 | 6 | 170 | 357 | 227 | 428 | 4.27e-43 | 161 |
| Msa0049630 | AT5G10510.1 | 50.739 | 203 | 84 | 6 | 170 | 357 | 250 | 451 | 5.96e-43 | 161 |
| Msa0049630 | AT5G10510.6 | 50.739 | 203 | 84 | 6 | 170 | 357 | 265 | 466 | 7.42e-43 | 161 |
| Msa0049630 | AT5G10510.4 | 50.739 | 203 | 84 | 6 | 170 | 357 | 265 | 466 | 7.42e-43 | 161 |
| Msa0049630 | AT3G54990.1 | 62.893 | 159 | 45 | 2 | 155 | 313 | 104 | 248 | 7.77e-43 | 156 |
| Msa0049630 | AT1G79700.2 | 53.409 | 176 | 71 | 2 | 164 | 328 | 43 | 218 | 5.58e-39 | 144 |
| Msa0049630 | AT5G10510.2 | 49.261 | 203 | 84 | 7 | 170 | 357 | 227 | 425 | 7.61e-39 | 149 |
| Msa0049630 | AT5G65510.3 | 51.825 | 137 | 55 | 3 | 170 | 295 | 170 | 306 | 2.30e-38 | 143 |
| Msa0049630 | AT1G16060.1 | 53.039 | 181 | 70 | 3 | 157 | 326 | 46 | 222 | 1.78e-37 | 141 |
| Msa0049630 | AT5G10510.3 | 44.843 | 223 | 87 | 7 | 170 | 357 | 265 | 486 | 3.49e-36 | 142 |
| Msa0049630 | AT3G54320.4 | 54.074 | 135 | 61 | 1 | 197 | 330 | 33 | 167 | 4.72e-32 | 127 |
| Msa0049630 | AT3G54320.5 | 54.074 | 135 | 61 | 1 | 197 | 330 | 33 | 167 | 4.72e-32 | 127 |
| Msa0049630 | AT1G79700.1 | 50.568 | 176 | 66 | 3 | 164 | 328 | 43 | 208 | 8.00e-32 | 124 |
| Msa0049630 | AT1G79700.3 | 54.348 | 138 | 62 | 1 | 192 | 328 | 5 | 142 | 1.29e-27 | 111 |
| Msa0049630 | AT1G16060.3 | 55.147 | 136 | 60 | 1 | 192 | 326 | 17 | 152 | 9.95e-27 | 109 |
| Msa0049630 | AT1G79700.4 | 54.198 | 131 | 59 | 1 | 199 | 328 | 6 | 136 | 2.04e-25 | 105 |
| Msa0049630 | AT2G41710.1 | 49.231 | 130 | 52 | 2 | 170 | 289 | 67 | 192 | 2.19e-24 | 105 |
| Msa0049630 | AT2G41710.4 | 49.231 | 130 | 52 | 2 | 170 | 289 | 67 | 192 | 3.25e-24 | 105 |
| Msa0049630 | AT2G41710.2 | 47.407 | 135 | 52 | 3 | 170 | 289 | 67 | 197 | 3.11e-22 | 99.8 |
| Msa0049630 | AT3G54320.2 | 58.696 | 92 | 37 | 1 | 240 | 330 | 1 | 92 | 8.56e-20 | 90.1 |
| Msa0049630 | AT2G41710.3 | 46.667 | 120 | 50 | 2 | 180 | 289 | 112 | 227 | 1.92e-19 | 91.7 |
| Msa0049630 | AT1G16060.2 | 57.955 | 88 | 36 | 1 | 240 | 326 | 1 | 88 | 9.22e-18 | 82.4 |
| Msa0049630 | AT1G16060.4 | 57.955 | 88 | 36 | 1 | 240 | 326 | 1 | 88 | 9.22e-18 | 82.4 |
| Msa0049630 | AT1G16060.6 | 57.955 | 88 | 36 | 1 | 240 | 326 | 1 | 88 | 9.22e-18 | 82.4 |
| Msa0049630 | AT1G16060.5 | 57.955 | 88 | 36 | 1 | 240 | 326 | 1 | 88 | 9.22e-18 | 82.4 |
| Msa0049630 | AT1G03800.1 | 41.071 | 112 | 55 | 4 | 265 | 367 | 52 | 161 | 3.70e-11 | 63.9 |
| Msa0049630 | AT2G47520.1 | 44.444 | 90 | 45 | 3 | 151 | 236 | 25 | 113 | 7.45e-11 | 61.6 |
Find 118 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTCTATTATATGGTTT+TGG | 0.153032 | 1_2:+3012106 | None:intergenic |
| TGAATGTAAAACGGTTAAAT+AGG | 0.159103 | 1_2:+3011191 | None:intergenic |
| ACTTTGTTTCTTTGGTTCTT+TGG | 0.170788 | 1_2:+3014203 | None:intergenic |
| GAACCAAAACTTTGTTTCTT+TGG | 0.177683 | 1_2:+3014195 | None:intergenic |
| AAAAGAAACAGTAAGATATT+TGG | 0.204737 | 1_2:-3013911 | Msa0049630:CDS |
| CTAATAAAATTAAGAAAATA+AGG | 0.205635 | 1_2:+3011135 | None:intergenic |
| ATATCTACAATTAGATATTA+TGG | 0.219125 | 1_2:-3011001 | Msa0049630:three_prime_UTR |
| CACAATTTGGATTTAAGTTT+GGG | 0.236642 | 1_2:-3012344 | Msa0049630:CDS |
| ATATTGTTTGGTCTATTATA+TGG | 0.284756 | 1_2:+3012100 | None:intergenic |
| TAATGCTGGTGATCACAATT+TGG | 0.288302 | 1_2:-3012357 | Msa0049630:CDS |
| TCACAATTTGGATTTAAGTT+TGG | 0.292491 | 1_2:-3012345 | Msa0049630:CDS |
| GGAACTCATTAGTCTTAGTT+TGG | 0.294208 | 1_2:-3011048 | Msa0049630:three_prime_UTR |
| CCATATGCTTCCATATTGTT+TGG | 0.297515 | 1_2:+3012088 | None:intergenic |
| AATTTGAATGCAATGTTAGA+AGG | 0.303144 | 1_2:-3011104 | Msa0049630:three_prime_UTR |
| CAAGCTTGGCAGCACATAAA+TGG | 0.312102 | 1_2:-3011244 | Msa0049630:CDS |
| AGAGTACCCACATGAAAATT+TGG | 0.316290 | 1_2:+3011923 | None:intergenic |
| ATGCATCTGATCAATCTAAT+TGG | 0.325045 | 1_2:-3012280 | Msa0049630:CDS |
| GAGATGAAGATAAAGCAAAA+AGG | 0.330561 | 1_2:-3014030 | Msa0049630:CDS |
| GAACCAAAGAAACAAAGTTT+TGG | 0.339964 | 1_2:-3014198 | Msa0049630:five_prime_UTR |
| TCGGCTAACATTGCTGAAAC+TGG | 0.340167 | 1_2:-3014449 | Msa0049630:five_prime_UTR |
| GAATGTAAAACGGTTAAATA+GGG | 0.340722 | 1_2:+3011192 | None:intergenic |
| AGAGAGAGTGAATGGTGTTA+AGG | 0.343459 | 1_2:-3014488 | Msa0049630:five_prime_UTR |
| AAGGTAAAAGAAGGTGATTT+TGG | 0.344206 | 1_2:+3014232 | None:intergenic |
| ATTTGTGACTGATCTCTAAA+AGG | 0.350712 | 1_2:+3011974 | None:intergenic |
| GACAACGAGCTTAATAATTC+TGG | 0.352333 | 1_2:-3012502 | Msa0049630:intron |
| AGAGCAGCTATTAAGTTTAG+AGG | 0.357329 | 1_2:-3013104 | Msa0049630:CDS |
| ATATATGCTTGGATCAAAAT+TGG | 0.369931 | 1_2:+3012525 | None:intergenic |
| TGATCACCAGCATTACTTGC+TGG | 0.378574 | 1_2:+3012365 | None:intergenic |
| TTTGCTTGAGTATCATTGAT+AGG | 0.379424 | 1_2:+3012305 | None:intergenic |
| CAACAACAACAATGGCAATC+AGG | 0.383189 | 1_2:-3011340 | Msa0049630:CDS |
| GCATCTTCATGTGGTGGAAA+TGG | 0.384567 | 1_2:-3013776 | Msa0049630:CDS |
| GTCGATGGGAATCACATATA+TGG | 0.385048 | 1_2:-3013559 | Msa0049630:intron |
| GCAAGAATGGGACAATTCTT+AGG | 0.385605 | 1_2:-3012817 | Msa0049630:CDS |
| TGGCCTCGTCTATGCTGTAT+TGG | 0.393292 | 1_2:-3014429 | Msa0049630:five_prime_UTR |
| ATATAATAGACCAAACAATA+TGG | 0.404545 | 1_2:-3012098 | Msa0049630:CDS |
| GGATCAAGAGTCTGATGATA+TGG | 0.408466 | 1_2:-3013804 | Msa0049630:CDS |
| ACTGCTGCTGCAGCATCATC+AGG | 0.408622 | 1_2:-3011301 | Msa0049630:CDS |
| AGGTGAAGTTGAGATGCTTT+CGG | 0.421973 | 1_2:-3014468 | Msa0049630:five_prime_UTR |
| CCAAACAATATGGAAGCATA+TGG | 0.430711 | 1_2:-3012088 | Msa0049630:CDS |
| TGGAAGATGGGAGGCAAGAA+TGG | 0.436163 | 1_2:-3012830 | Msa0049630:CDS |
| ATCAATCTAATTGGCAGCAT+GGG | 0.439853 | 1_2:-3012271 | Msa0049630:CDS |
| TGCAACACCTACCTCTTCAC+TGG | 0.441140 | 1_2:-3014359 | Msa0049630:five_prime_UTR |
| CACCCTCTTCTTCTCAAGCT+TGG | 0.454258 | 1_2:-3011258 | Msa0049630:CDS |
| GGCCTCGTCTATGCTGTATT+GGG | 0.457225 | 1_2:-3014428 | Msa0049630:five_prime_UTR |
| CCTACCTCTTCACTGGTCCT+AGG | 0.457383 | 1_2:-3014352 | Msa0049630:five_prime_UTR |
| TCGGCTTCCATAGCTGCTGC+TGG | 0.457470 | 1_2:+3011402 | None:intergenic |
| CTATATTTAGAGCTTCCTCT+TGG | 0.461670 | 1_2:+3012874 | None:intergenic |
| GAGTAGTTGTCAAGTGAAAG+AGG | 0.464682 | 1_2:+3014288 | None:intergenic |
| AGCTCGTTGTCATATATGCT+TGG | 0.465069 | 1_2:+3012514 | None:intergenic |
| GAAGAGGGTGGTCTAATTTG+AGG | 0.465254 | 1_2:+3011271 | None:intergenic |
| TAGTTTCCCAGCAGCAGCTA+TGG | 0.477925 | 1_2:-3011409 | Msa0049630:CDS |
| TATTGTGAACTTCTTGACCT+TGG | 0.482190 | 1_2:+3013611 | None:intergenic |
| TAATAAAATTAAGAAAATAA+GGG | 0.485483 | 1_2:+3011136 | None:intergenic |
| TGTGGAAAACAAGTGTATCT+TGG | 0.489731 | 1_2:-3013419 | Msa0049630:intron |
| TTTCCTCGTGCTCATTGGGT+AGG | 0.490632 | 1_2:-3013731 | Msa0049630:CDS |
| ATGTTTATTTGAATGTAAAA+CGG | 0.493428 | 1_2:+3011182 | None:intergenic |
| TTATGAAGAAGATTTAAAGC+AGG | 0.500170 | 1_2:-3013048 | Msa0049630:intron |
| AATAAAATGCAATGGTAAAG+AGG | 0.502814 | 1_2:-3012554 | Msa0049630:CDS |
| CATTGCACAAATGTGGAAGA+TGG | 0.503002 | 1_2:-3012843 | Msa0049630:CDS |
| AAAGAGGTTGAGTGTGATGA+TGG | 0.507642 | 1_2:+3014304 | None:intergenic |
| ATTTGAATGCAATGTTAGAA+GGG | 0.507815 | 1_2:-3011103 | Msa0049630:three_prime_UTR |
| CATTTGATGATGAAGAATGA+AGG | 0.508677 | 1_2:+3012014 | None:intergenic |
| GCAGAACCAGCAAGTAATGC+TGG | 0.511395 | 1_2:-3012371 | Msa0049630:CDS |
| AGCAGCTATGGAAGCCGAGT+TGG | 0.511638 | 1_2:-3011397 | Msa0049630:CDS |
| TCAAGAAGTTCACAATATAG+AGG | 0.514827 | 1_2:-3013605 | Msa0049630:CDS |
| TCTCATAATTGCAGGGATTG+TGG | 0.516374 | 1_2:-3013437 | Msa0049630:intron |
| AACAACAACAATGGCAATCA+GGG | 0.519302 | 1_2:-3011339 | Msa0049630:CDS |
| TCATCAGACTCTTGATCCAT+AGG | 0.519737 | 1_2:+3013809 | None:intergenic |
| GGATGTTCTTCACTCAAAGA+TGG | 0.534996 | 1_2:-3014052 | Msa0049630:CDS |
| GGATGAGTCAAACTAACAAA+CGG | 0.538684 | 1_2:-3011027 | Msa0049630:three_prime_UTR |
| TTTACAGAAGAACAGGTCGA+TGG | 0.544216 | 1_2:-3013574 | Msa0049630:CDS |
| GATCAATCTAATTGGCAGCA+TGG | 0.545229 | 1_2:-3012272 | Msa0049630:CDS |
| AGAGGAAGCTCTAAATATAG+AGG | 0.546165 | 1_2:-3012871 | Msa0049630:CDS |
| CGGCTTCCATAGCTGCTGCT+GGG | 0.549582 | 1_2:+3011403 | None:intergenic |
| ACGGTTAAATAGGGATCAAG+AGG | 0.556646 | 1_2:+3011201 | None:intergenic |
| GGAAGATGGGAGGCAAGAAT+GGG | 0.561290 | 1_2:-3012829 | Msa0049630:CDS |
| GTACCTTGCAGCTTCAACCT+CGG | 0.561520 | 1_2:+3012691 | None:intergenic |
| GAGGGTGGTCTAATTTGAGG+TGG | 0.565751 | 1_2:+3011274 | None:intergenic |
| ATTGCACAAATGTGGAAGAT+GGG | 0.567084 | 1_2:-3012842 | Msa0049630:CDS |
| GTACTTCGTCGACAAAGCAC+TGG | 0.569473 | 1_2:-3012901 | Msa0049630:CDS |
| TTACAGAAGAACAGGTCGAT+GGG | 0.572290 | 1_2:-3013573 | Msa0049630:CDS |
| ACAATATGGAAGCATATGGA+AGG | 0.574740 | 1_2:-3012084 | Msa0049630:CDS |
| GGTGTTACATTGCACAAATG+TGG | 0.575043 | 1_2:-3012850 | Msa0049630:CDS |
| AGGGTGGTCTAATTTGAGGT+GGG | 0.578261 | 1_2:+3011275 | None:intergenic |
| TGTCAATCAGAAACACTTGG+AGG | 0.580345 | 1_2:-3013698 | Msa0049630:CDS |
| CCTATGAAGAAAAGTAGAAG+AGG | 0.584545 | 1_2:-3013635 | Msa0049630:CDS |
| TCAATCTAATTGGCAGCATG+GGG | 0.594017 | 1_2:-3012270 | Msa0049630:CDS |
| AAGAGGTTGAGTGTGATGAT+GGG | 0.598585 | 1_2:+3014305 | None:intergenic |
| ATGAAAGATCACTTCCAACT+CGG | 0.600183 | 1_2:+3011383 | None:intergenic |
| ACACCGAGGTTGAAGCTGCA+AGG | 0.605931 | 1_2:-3012694 | Msa0049630:intron |
| AAAGCAGCAATAAAATGCAA+TGG | 0.607563 | 1_2:-3012562 | Msa0049630:CDS |
| GTTATAGCATCTTCATGTGG+TGG | 0.609279 | 1_2:-3013782 | Msa0049630:CDS |
| ACACAGCACATGCAGCTGCT+CGG | 0.611926 | 1_2:-3013223 | Msa0049630:intron |
| CTGCCAAGCTTGAGAAGAAG+AGG | 0.614697 | 1_2:+3011255 | None:intergenic |
| GCATATGGAAGGGATTTGCA+TGG | 0.618990 | 1_2:-3012073 | Msa0049630:CDS |
| CAATATGGAAGCATATGGAA+GGG | 0.623025 | 1_2:-3012083 | Msa0049630:CDS |
| GCTTGGATCAAAATTGGTGA+CGG | 0.623409 | 1_2:+3012531 | None:intergenic |
| AAGAGGGTCTCATGAGATTG+CGG | 0.624464 | 1_2:+3011218 | None:intergenic |
| GCAGCAGTTGCTAAATAATG+TGG | 0.624566 | 1_2:+3011316 | None:intergenic |
| ATCATCATCAACAACAACAA+TGG | 0.626378 | 1_2:-3011348 | Msa0049630:CDS |
| ATGTTAGAAGGGATAGCAAG+AGG | 0.630113 | 1_2:-3011092 | Msa0049630:three_prime_UTR |
| CAAACCTAGGACCAGTGAAG+AGG | 0.630498 | 1_2:+3014348 | None:intergenic |
| GTACCCACATGAAAATTTGG+TGG | 0.636697 | 1_2:+3011926 | None:intergenic |
| TACCCACATGAAAATTTGGT+GGG | 0.637961 | 1_2:+3011927 | None:intergenic |
| CTATGAAGAAAAGTAGAAGA+GGG | 0.641615 | 1_2:-3013634 | Msa0049630:CDS |
| TCTGGGCTTGTTTGACACCG+AGG | 0.646423 | 1_2:-3012708 | Msa0049630:CDS |
| AGAAAAGTAGAAGAGGGCCA+AGG | 0.647064 | 1_2:-3013628 | Msa0049630:CDS |
| GCACAAATGTGGAAGATGGG+AGG | 0.665861 | 1_2:-3012839 | Msa0049630:CDS |
| CCTAGGACCAGTGAAGAGGT+AGG | 0.670118 | 1_2:+3014352 | None:intergenic |
| ATGGAGAGAGTGAAGCATTG+AGG | 0.677397 | 1_2:-3012054 | Msa0049630:CDS |
| CAAGCTTGAGAAGAAGAGGG+TGG | 0.678347 | 1_2:+3011259 | None:intergenic |
| CGGTTAAATAGGGATCAAGA+GGG | 0.690526 | 1_2:+3011202 | None:intergenic |
| AGGGTCTCATGAGATTGCGG+AGG | 0.691450 | 1_2:+3011221 | None:intergenic |
| TGCCAAGCTTGAGAAGAAGA+GGG | 0.692321 | 1_2:+3011256 | None:intergenic |
| ACACCTACCCAATGAGCACG+AGG | 0.695607 | 1_2:+3013728 | None:intergenic |
| ATGGTTATAGCATCTTCATG+TGG | 0.723044 | 1_2:-3013785 | Msa0049630:CDS |
| CAATCTAATTGGCAGCATGG+GGG | 0.724886 | 1_2:-3012269 | Msa0049630:CDS |
| TGCCCAATACAGCATAGACG+AGG | 0.728914 | 1_2:+3014426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAATCAAATTTTTTTTA+AGG | + | chr1_2:3011937-3011956 | None:intergenic | 10.0% |
| !!! | AAAAAATTTGATTCTTTTTT+TGG | - | chr1_2:3011940-3011959 | Msa0049630:CDS | 10.0% |
| !!! | ATTTTATTTAATTTCAGTTA+TGG | - | chr1_2:3012243-3012262 | Msa0049630:intron | 10.0% |
| !!! | TTTTATTTAATTTCAGTTAT+GGG | - | chr1_2:3012244-3012263 | Msa0049630:intron | 10.0% |
| !!! | TGAAATTGAATTAATTTTTT+TGG | - | chr1_2:3012440-3012459 | Msa0049630:intron | 10.0% |
| !!! | AATGAAATTTTTTACTATAT+AGG | - | chr1_2:3012821-3012840 | Msa0049630:CDS | 10.0% |
| !!! | ATGAAATTTTTTACTATATA+GGG | - | chr1_2:3012822-3012841 | Msa0049630:CDS | 10.0% |
| !!! | TAGTTTTTTCAAAAATATAA+AGG | - | chr1_2:3013868-3013887 | Msa0049630:CDS | 10.0% |
| !! | CTAATAAAATTAAGAAAATA+AGG | + | chr1_2:3014283-3014302 | None:intergenic | 10.0% |
| !! | AAAAACAAAAAATCTAAATT+GGG | - | chr1_2:3014346-3014365 | Msa0049630:five_prime_UTR | 10.0% |
| !!! | TTTTAAGGTTTACATTTTTA+AGG | + | chr1_2:3011922-3011941 | None:intergenic | 15.0% |
| !!! | GAATAATTGTTGTATTATTT+TGG | - | chr1_2:3012054-3012073 | Msa0049630:CDS | 15.0% |
| !!! | TTTATTTAATTTCAGTTATG+GGG | - | chr1_2:3012245-3012264 | Msa0049630:intron | 15.0% |
| !! | TTTAAATAATATTACACCTT+AGG | + | chr1_2:3013179-3013198 | None:intergenic | 15.0% |
| !! | AACAAGAAGAAATTATTATA+GGG | + | chr1_2:3013945-3013964 | None:intergenic | 15.0% |
| !! | ATGTTTATTTGAATGTAAAA+CGG | + | chr1_2:3014236-3014255 | None:intergenic | 15.0% |
| !! | GAAAAACAAAAAATCTAAAT+TGG | - | chr1_2:3014345-3014364 | Msa0049630:five_prime_UTR | 15.0% |
| !! | ATATCTACAATTAGATATTA+TGG | - | chr1_2:3014414-3014433 | Msa0049630:five_prime_UTR | 15.0% |
| !!! | TATGATTCATTTTCTTAATT+TGG | - | chr1_2:3014503-3014522 | Msa0049630:five_prime_UTR | 15.0% |
| !!! | TAGTTTTGCAAAAAAAAATG+TGG | - | chr1_2:3011289-3011308 | Msa0049630:CDS | 20.0% |
| !!! | AGTTTTGCAAAAAAAAATGT+GGG | - | chr1_2:3011290-3011309 | Msa0049630:CDS | 20.0% |
| !! | AAAAGAAACAGTAAGATATT+TGG | - | chr1_2:3011504-3011523 | Msa0049630:intron | 20.0% |
| !!! | AATTTTTTTTGCTTCTTTTG+TGG | - | chr1_2:3012080-3012099 | Msa0049630:CDS | 20.0% |
| !!! | AATCATGATTTTCATTTTCT+AGG | - | chr1_2:3012676-3012695 | Msa0049630:intron | 20.0% |
| !!! | AATTCTGGTATATTTTGTTA+TGG | - | chr1_2:3012928-3012947 | Msa0049630:CDS | 20.0% |
| !! | ATATTGTTTGGTCTATTATA+TGG | + | chr1_2:3013318-3013337 | None:intergenic | 20.0% |
| !! | ATATAATAGACCAAACAATA+TGG | - | chr1_2:3013317-3013336 | Msa0049630:intron | 20.0% |
| !!! | ATTTTTTACTATTATGCATG+AGG | + | chr1_2:3013532-3013551 | None:intergenic | 20.0% |
| !! | TTTATATTGACAATAGAAGT+GGG | + | chr1_2:3013563-3013582 | None:intergenic | 20.0% |
| !! | ATTTATATTGACAATAGAAG+TGG | + | chr1_2:3013564-3013583 | None:intergenic | 20.0% |
| !!! | ATTAGCATGATTTTAAATTG+TGG | - | chr1_2:3013584-3013603 | Msa0049630:CDS | 20.0% |
| !!! | ATTGTAATCATGGTTTTAAA+TGG | + | chr1_2:3013921-3013940 | None:intergenic | 20.0% |
| !! | CAACAAGAAGAAATTATTAT+AGG | + | chr1_2:3013946-3013965 | None:intergenic | 20.0% |
| !!! | AGAAAATAAGGGAAAATTTT+AGG | + | chr1_2:3014271-3014290 | None:intergenic | 20.0% |
| ! | TAGAAGAAAAAATCAAACCT+AGG | + | chr1_2:3011083-3011102 | None:intergenic | 25.0% |
| !!! | TTTGGTTGGTTAAGAATTTT+GGG | + | chr1_2:3011168-3011187 | None:intergenic | 25.0% |
| !!! | TTTTGGTTGGTTAAGAATTT+TGG | + | chr1_2:3011169-3011188 | None:intergenic | 25.0% |
| ! | AAAAAAATGTGGGATCTTAA+TGG | - | chr1_2:3011300-3011319 | Msa0049630:CDS | 25.0% |
| !! | TGATCTTCTTTTCTCTTAAA+AGG | + | chr1_2:3011330-3011349 | None:intergenic | 25.0% |
| ! | AGATGAAGATAAAGCAAAAA+GGG | - | chr1_2:3011386-3011405 | Msa0049630:CDS | 25.0% |
| !!! | AGACAAGAGTTAAGATTTTT+TGG | - | chr1_2:3012121-3012140 | Msa0049630:CDS | 25.0% |
| ! | TTGTCTGGATAAATTTGTAT+AGG | - | chr1_2:3012161-3012180 | Msa0049630:intron | 25.0% |
| !! | TTATGAAGAAGATTTAAAGC+AGG | - | chr1_2:3012367-3012386 | Msa0049630:CDS | 25.0% |
| ! | ATAAACCTAAAACTAATCCA+TGG | + | chr1_2:3012781-3012800 | None:intergenic | 25.0% |
| ! | AATAAAATGCAATGGTAAAG+AGG | - | chr1_2:3012861-3012880 | Msa0049630:CDS | 25.0% |
| ! | ATATATGCTTGGATCAAAAT+TGG | + | chr1_2:3012893-3012912 | None:intergenic | 25.0% |
| !! | TCACAATTTGGATTTAAGTT+TGG | - | chr1_2:3013070-3013089 | Msa0049630:CDS | 25.0% |
| !! | CACAATTTGGATTTAAGTTT+GGG | - | chr1_2:3013071-3013090 | Msa0049630:CDS | 25.0% |
| !! | TTGGTCTATTATATGGTTTT+GGG | + | chr1_2:3013311-3013330 | None:intergenic | 25.0% |
| !! | TTTGGTCTATTATATGGTTT+TGG | + | chr1_2:3013312-3013331 | None:intergenic | 25.0% |
| ! | TAGCAATTGTAGTTGTAATA+TGG | - | chr1_2:3013670-3013689 | Msa0049630:CDS | 25.0% |
| ! | CTTCAAAATTCTTTACATTG+TGG | - | chr1_2:3013702-3013721 | Msa0049630:CDS | 25.0% |
| !!! | ATAACCATGGTTTTAAATTG+CGG | - | chr1_2:3013762-3013781 | Msa0049630:CDS | 25.0% |
| ! | ATAGAAAAATGTAGATGATG+CGG | + | chr1_2:3013849-3013868 | None:intergenic | 25.0% |
| ! | ATTATAGGGAATTGTAATCA+TGG | + | chr1_2:3013931-3013950 | None:intergenic | 25.0% |
| ! | GAATGTAAAACGGTTAAATA+GGG | + | chr1_2:3014226-3014245 | None:intergenic | 25.0% |
| ! | TGAATGTAAAACGGTTAAAT+AGG | + | chr1_2:3014227-3014246 | None:intergenic | 25.0% |
| ! | AATTTGAATGCAATGTTAGA+AGG | - | chr1_2:3014311-3014330 | Msa0049630:five_prime_UTR | 25.0% |
| ! | ATTTGAATGCAATGTTAGAA+GGG | - | chr1_2:3014312-3014331 | Msa0049630:five_prime_UTR | 25.0% |
| !!! | TTCTTGCTTTTCTGTATTAT+TGG | - | chr1_2:3014476-3014495 | Msa0049630:five_prime_UTR | 25.0% |
| !! | TAAAAGAAGGTGATTTTGGT+TGG | + | chr1_2:3011182-3011201 | None:intergenic | 30.0% |
| ! | AAGGTAAAAGAAGGTGATTT+TGG | + | chr1_2:3011186-3011205 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAAAGGTAAAAGA+AGG | + | chr1_2:3011195-3011214 | None:intergenic | 30.0% |
| !!! | TTTGGTTCTTTGGTTTTGAA+AGG | + | chr1_2:3011205-3011224 | None:intergenic | 30.0% |
| !! | ACTTTGTTTCTTTGGTTCTT+TGG | + | chr1_2:3011215-3011234 | None:intergenic | 30.0% |
| ! | GAACCAAAGAAACAAAGTTT+TGG | - | chr1_2:3011217-3011236 | Msa0049630:CDS | 30.0% |
| ! | GAACCAAAACTTTGTTTCTT+TGG | + | chr1_2:3011223-3011242 | None:intergenic | 30.0% |
| GAAGATCATGAAAAATCTGA+AGG | - | chr1_2:3011342-3011361 | Msa0049630:CDS | 30.0% | |
| GAGATGAAGATAAAGCAAAA+AGG | - | chr1_2:3011385-3011404 | Msa0049630:CDS | 30.0% | |
| ! | TTTTGTCAATCAGAAACACT+TGG | - | chr1_2:3011714-3011733 | Msa0049630:intron | 30.0% |
| CTATGAAGAAAAGTAGAAGA+GGG | - | chr1_2:3011781-3011800 | Msa0049630:intron | 30.0% | |
| TCAAGAAGTTCACAATATAG+AGG | - | chr1_2:3011810-3011829 | Msa0049630:intron | 30.0% | |
| !!! | GTTACTTTTTACAGAAGAAC+AGG | - | chr1_2:3011834-3011853 | Msa0049630:intron | 30.0% |
| !! | ACTGAATAGATTGTTTTGTC+TGG | - | chr1_2:3012146-3012165 | Msa0049630:intron | 30.0% |
| TCTGGATAAATTTGTATAGG+TGG | - | chr1_2:3012164-3012183 | Msa0049630:intron | 30.0% | |
| ! | ATTTTCTAGGTACGTTTATC+TGG | - | chr1_2:3012689-3012708 | Msa0049630:intron | 30.0% |
| ! | TTTTCTAGGTACGTTTATCT+GGG | - | chr1_2:3012690-3012709 | Msa0049630:intron | 30.0% |
| AAAATAGACAACGTAAGCAA+AGG | + | chr1_2:3012752-3012771 | None:intergenic | 30.0% | |
| ! | TTTGCTTACGTTGTCTATTT+TGG | - | chr1_2:3012751-3012770 | Msa0049630:intron | 30.0% |
| !!! | TTGTCTATTTTGGTATACCA+TGG | - | chr1_2:3012761-3012780 | Msa0049630:intron | 30.0% |
| !!! | GTATACCATGGATTAGTTTT+AGG | - | chr1_2:3012773-3012792 | Msa0049630:intron | 30.0% |
| AAAGCAGCAATAAAATGCAA+TGG | - | chr1_2:3012853-3012872 | Msa0049630:CDS | 30.0% | |
| TTTGCTTGAGTATCATTGAT+AGG | + | chr1_2:3013113-3013132 | None:intergenic | 30.0% | |
| ATGCATCTGATCAATCTAAT+TGG | - | chr1_2:3013135-3013154 | Msa0049630:intron | 30.0% | |
| !! | CATTTGATGATGAAGAATGA+AGG | + | chr1_2:3013404-3013423 | None:intergenic | 30.0% |
| ATTTGTGACTGATCTCTAAA+AGG | + | chr1_2:3013444-3013463 | None:intergenic | 30.0% | |
| ATGGTTATGGTACAAAATCA+TGG | + | chr1_2:3013750-3013769 | None:intergenic | 30.0% | |
| ! | ATGATTTTGTACCATAACCA+TGG | - | chr1_2:3013749-3013768 | Msa0049630:CDS | 30.0% |
| ! | GCAATTTAAAACCATGGTTA+TGG | + | chr1_2:3013763-3013782 | None:intergenic | 30.0% |
| ! | AATCTTTTGTCTTGTAGTTG+CGG | + | chr1_2:3013789-3013808 | None:intergenic | 30.0% |
| ACTACAAGACAAAAGATTTG+AGG | - | chr1_2:3013791-3013810 | Msa0049630:CDS | 30.0% | |
| ATCATCATCAACAACAACAA+TGG | - | chr1_2:3014067-3014086 | Msa0049630:CDS | 30.0% | |
| GAAGATAAAGCAAAAAGGGT+TGG | - | chr1_2:3011390-3011409 | Msa0049630:CDS | 35.0% | |
| ! | AGGACAATTTTCACTGTCTA+AGG | + | chr1_2:3011568-3011587 | None:intergenic | 35.0% |
| !!! | GACAAGACAGTTTTTTCCTA+TGG | - | chr1_2:3011590-3011609 | Msa0049630:intron | 35.0% |
| ATGGTTATAGCATCTTCATG+TGG | - | chr1_2:3011630-3011649 | Msa0049630:intron | 35.0% | |
| !! | CCTCTTCTACTTTTCTTCAT+AGG | + | chr1_2:3011783-3011802 | None:intergenic | 35.0% |
| CCTATGAAGAAAAGTAGAAG+AGG | - | chr1_2:3011780-3011799 | Msa0049630:intron | 35.0% | |
| TATTGTGAACTTCTTGACCT+TGG | + | chr1_2:3011807-3011826 | None:intergenic | 35.0% | |
| TTTGTGTCTCTCATAATTGC+AGG | - | chr1_2:3011970-3011989 | Msa0049630:CDS | 35.0% | |
| TTGTGTCTCTCATAATTGCA+GGG | - | chr1_2:3011971-3011990 | Msa0049630:CDS | 35.0% | |
| TGTGGAAAACAAGTGTATCT+TGG | - | chr1_2:3011996-3012015 | Msa0049630:CDS | 35.0% | |
| !!! | TTTTTTGCTTCTTTTGTGGC+TGG | - | chr1_2:3012084-3012103 | Msa0049630:CDS | 35.0% |
| ! | TTTTGTGGCTGGATATGATT+TGG | - | chr1_2:3012095-3012114 | Msa0049630:CDS | 35.0% |
| AGAGCAGCTATTAAGTTTAG+AGG | - | chr1_2:3012311-3012330 | Msa0049630:CDS | 35.0% | |
| ! | CTATATTTAGAGCTTCCTCT+TGG | + | chr1_2:3012544-3012563 | None:intergenic | 35.0% |
| !! | AGAGGAAGCTCTAAATATAG+AGG | - | chr1_2:3012544-3012563 | Msa0049630:CDS | 35.0% |
| ATTGCACAAATGTGGAAGAT+GGG | - | chr1_2:3012573-3012592 | Msa0049630:CDS | 35.0% | |
| GACAACGAGCTTAATAATTC+TGG | - | chr1_2:3012913-3012932 | Msa0049630:CDS | 35.0% | |
| TAATGCTGGTGATCACAATT+TGG | - | chr1_2:3013058-3013077 | Msa0049630:CDS | 35.0% | |
| ATCAATCTAATTGGCAGCAT+GGG | - | chr1_2:3013144-3013163 | Msa0049630:intron | 35.0% | |
| CCATATGCTTCCATATTGTT+TGG | + | chr1_2:3013330-3013349 | None:intergenic | 35.0% | |
| ! | CCAAACAATATGGAAGCATA+TGG | - | chr1_2:3013327-3013346 | Msa0049630:intron | 35.0% |
| ! | ACAATATGGAAGCATATGGA+AGG | - | chr1_2:3013331-3013350 | Msa0049630:intron | 35.0% |
| ! | CAATATGGAAGCATATGGAA+GGG | - | chr1_2:3013332-3013351 | Msa0049630:intron | 35.0% |
| TACCCACATGAAAATTTGGT+GGG | + | chr1_2:3013491-3013510 | None:intergenic | 35.0% | |
| ! | AGAGTACCCACATGAAAATT+TGG | + | chr1_2:3013495-3013514 | None:intergenic | 35.0% |
| TTGTGATTGTAATTCCGTTG+TGG | + | chr1_2:3013820-3013839 | None:intergenic | 35.0% | |
| ATGAAAGATCACTTCCAACT+CGG | + | chr1_2:3014035-3014054 | None:intergenic | 35.0% | |
| AACAACAACAATGGCAATCA+GGG | - | chr1_2:3014076-3014095 | Msa0049630:CDS | 35.0% | |
| !! | GGAACTCATTAGTCTTAGTT+TGG | - | chr1_2:3014367-3014386 | Msa0049630:five_prime_UTR | 35.0% |
| GGATGAGTCAAACTAACAAA+CGG | - | chr1_2:3014388-3014407 | Msa0049630:five_prime_UTR | 35.0% | |
| ! | AGAGAGAGTGAATGGTGTTA+AGG | - | chr1_2:3010927-3010946 | Msa0049630:three_prime_UTR | 40.0% |
| AGGTGAAGTTGAGATGCTTT+CGG | - | chr1_2:3010947-3010966 | Msa0049630:three_prime_UTR | 40.0% | |
| AAGAGGTTGAGTGTGATGAT+GGG | + | chr1_2:3011113-3011132 | None:intergenic | 40.0% | |
| AAAGAGGTTGAGTGTGATGA+TGG | + | chr1_2:3011114-3011133 | None:intergenic | 40.0% | |
| GAGTAGTTGTCAAGTGAAAG+AGG | + | chr1_2:3011130-3011149 | None:intergenic | 40.0% | |
| GGATGTTCTTCACTCAAAGA+TGG | - | chr1_2:3011363-3011382 | Msa0049630:CDS | 40.0% | |
| GATAAAGCAAAAAGGGTTGG+TGG | - | chr1_2:3011393-3011412 | Msa0049630:CDS | 40.0% | |
| GGAAAAAACTGTCTTGTCAC+AGG | + | chr1_2:3011588-3011607 | None:intergenic | 40.0% | |
| TCATCAGACTCTTGATCCAT+AGG | + | chr1_2:3011609-3011628 | None:intergenic | 40.0% | |
| GGATCAAGAGTCTGATGATA+TGG | - | chr1_2:3011611-3011630 | Msa0049630:intron | 40.0% | |
| GTTATAGCATCTTCATGTGG+TGG | - | chr1_2:3011633-3011652 | Msa0049630:intron | 40.0% | |
| ! | TAGTTTTCCTCGTGCTCATT+GGG | - | chr1_2:3011680-3011699 | Msa0049630:intron | 40.0% |
| TGTCAATCAGAAACACTTGG+AGG | - | chr1_2:3011717-3011736 | Msa0049630:intron | 40.0% | |
| TTTACAGAAGAACAGGTCGA+TGG | - | chr1_2:3011841-3011860 | Msa0049630:intron | 40.0% | |
| TTACAGAAGAACAGGTCGAT+GGG | - | chr1_2:3011842-3011861 | Msa0049630:intron | 40.0% | |
| GTCGATGGGAATCACATATA+TGG | - | chr1_2:3011856-3011875 | Msa0049630:intron | 40.0% | |
| TCTCATAATTGCAGGGATTG+TGG | - | chr1_2:3011978-3011997 | Msa0049630:CDS | 40.0% | |
| ! | GGTGTTACATTGCACAAATG+TGG | - | chr1_2:3012565-3012584 | Msa0049630:CDS | 40.0% |
| CATTGCACAAATGTGGAAGA+TGG | - | chr1_2:3012572-3012591 | Msa0049630:CDS | 40.0% | |
| GCAAGAATGGGACAATTCTT+AGG | - | chr1_2:3012598-3012617 | Msa0049630:intron | 40.0% | |
| GCTTGGATCAAAATTGGTGA+CGG | + | chr1_2:3012887-3012906 | None:intergenic | 40.0% | |
| AGCTCGTTGTCATATATGCT+TGG | + | chr1_2:3012904-3012923 | None:intergenic | 40.0% | |
| GATCAATCTAATTGGCAGCA+TGG | - | chr1_2:3013143-3013162 | Msa0049630:intron | 40.0% | |
| TCAATCTAATTGGCAGCATG+GGG | - | chr1_2:3013145-3013164 | Msa0049630:intron | 40.0% | |
| ! | TCACCCACCAAATTTTCATG+TGG | - | chr1_2:3013485-3013504 | Msa0049630:intron | 40.0% |
| ! | CACCCACCAAATTTTCATGT+GGG | - | chr1_2:3013486-3013505 | Msa0049630:intron | 40.0% |
| GTACCCACATGAAAATTTGG+TGG | + | chr1_2:3013492-3013511 | None:intergenic | 40.0% | |
| ! | AAGATTTGAGGTCTCCACAA+CGG | - | chr1_2:3013803-3013822 | Msa0049630:CDS | 40.0% |
| CAACAACAACAATGGCAATC+AGG | - | chr1_2:3014075-3014094 | Msa0049630:CDS | 40.0% | |
| GCAGCAGTTGCTAAATAATG+TGG | + | chr1_2:3014102-3014121 | None:intergenic | 40.0% | |
| CGGTTAAATAGGGATCAAGA+GGG | + | chr1_2:3014216-3014235 | None:intergenic | 40.0% | |
| ACGGTTAAATAGGGATCAAG+AGG | + | chr1_2:3014217-3014236 | None:intergenic | 40.0% | |
| ATGTTAGAAGGGATAGCAAG+AGG | - | chr1_2:3014323-3014342 | Msa0049630:five_prime_UTR | 40.0% | |
| AGAGAGAGAGAGAGAGTGAA+TGG | - | chr1_2:3010919-3010938 | Msa0049630:three_prime_UTR | 45.0% | |
| TCGGCTAACATTGCTGAAAC+TGG | - | chr1_2:3010966-3010985 | Msa0049630:three_prime_UTR | 45.0% | |
| ! | GCATCTTCATGTGGTGGAAA+TGG | - | chr1_2:3011639-3011658 | Msa0049630:intron | 45.0% |
| !! | CTAGTTTTCCTCGTGCTCAT+TGG | - | chr1_2:3011679-3011698 | Msa0049630:intron | 45.0% |
| AGAAAAGTAGAAGAGGGCCA+AGG | - | chr1_2:3011787-3011806 | Msa0049630:intron | 45.0% | |
| !!! | CAAAGCACTGGTTTTCCAAG+AGG | - | chr1_2:3012526-3012545 | Msa0049630:CDS | 45.0% |
| TGATCACCAGCATTACTTGC+TGG | + | chr1_2:3013053-3013072 | None:intergenic | 45.0% | |
| CAATCTAATTGGCAGCATGG+GGG | - | chr1_2:3013146-3013165 | Msa0049630:intron | 45.0% | |
| GCATATGGAAGGGATTTGCA+TGG | - | chr1_2:3013342-3013361 | Msa0049630:intron | 45.0% | |
| !! | ATGGAGAGAGTGAAGCATTG+AGG | - | chr1_2:3013361-3013380 | Msa0049630:intron | 45.0% |
| ! | CGGACCGCAATTTAAAACCA+TGG | + | chr1_2:3013769-3013788 | None:intergenic | 45.0% |
| TTAAATGGCAGTTGCAGTCG+CGG | + | chr1_2:3013906-3013925 | None:intergenic | 45.0% | |
| ! | AGGGTGGTCTAATTTGAGGT+GGG | + | chr1_2:3014143-3014162 | None:intergenic | 45.0% |
| GAAGAGGGTGGTCTAATTTG+AGG | + | chr1_2:3014147-3014166 | None:intergenic | 45.0% | |
| TGCCAAGCTTGAGAAGAAGA+GGG | + | chr1_2:3014162-3014181 | None:intergenic | 45.0% | |
| CAAGCTTGGCAGCACATAAA+TGG | - | chr1_2:3014171-3014190 | Msa0049630:five_prime_UTR | 45.0% | |
| AAGAGGGTCTCATGAGATTG+CGG | + | chr1_2:3014200-3014219 | None:intergenic | 45.0% | |
| !! | AAAAAAAATGTTTAAATATT+AGG | + | chr1_2:3013249-3013268 | None:intergenic | 5.0% |
| !!! | TATATAAGTAAATTTTTTTT+TGG | - | chr1_2:3013977-3013996 | Msa0049630:CDS | 5.0% |
| !! | TAATAAAATTAAGAAAATAA+GGG | + | chr1_2:3014282-3014301 | None:intergenic | 5.0% |
| TGGCCTCGTCTATGCTGTAT+TGG | - | chr1_2:3010986-3011005 | Msa0049630:three_prime_UTR | 50.0% | |
| GGCCTCGTCTATGCTGTATT+GGG | - | chr1_2:3010987-3011006 | Msa0049630:three_prime_UTR | 50.0% | |
| TGCCCAATACAGCATAGACG+AGG | + | chr1_2:3010992-3011011 | None:intergenic | 50.0% | |
| TGCAACACCTACCTCTTCAC+TGG | - | chr1_2:3011056-3011075 | Msa0049630:three_prime_UTR | 50.0% | |
| CAAACCTAGGACCAGTGAAG+AGG | + | chr1_2:3011070-3011089 | None:intergenic | 50.0% | |
| TTTCCTCGTGCTCATTGGGT+AGG | - | chr1_2:3011684-3011703 | Msa0049630:intron | 50.0% | |
| GTACTTCGTCGACAAAGCAC+TGG | - | chr1_2:3012514-3012533 | Msa0049630:CDS | 50.0% | |
| GCACAAATGTGGAAGATGGG+AGG | - | chr1_2:3012576-3012595 | Msa0049630:intron | 50.0% | |
| TGGAAGATGGGAGGCAAGAA+TGG | - | chr1_2:3012585-3012604 | Msa0049630:intron | 50.0% | |
| GGAAGATGGGAGGCAAGAAT+GGG | - | chr1_2:3012586-3012605 | Msa0049630:intron | 50.0% | |
| GTACCTTGCAGCTTCAACCT+CGG | + | chr1_2:3012727-3012746 | None:intergenic | 50.0% | |
| GCAGAACCAGCAAGTAATGC+TGG | - | chr1_2:3013044-3013063 | Msa0049630:intron | 50.0% | |
| TAGTTTCCCAGCAGCAGCTA+TGG | - | chr1_2:3014006-3014025 | Msa0049630:CDS | 50.0% | |
| GAGGGTGGTCTAATTTGAGG+TGG | + | chr1_2:3014144-3014163 | None:intergenic | 50.0% | |
| CAAGCTTGAGAAGAAGAGGG+TGG | + | chr1_2:3014159-3014178 | None:intergenic | 50.0% | |
| CACCCTCTTCTTCTCAAGCT+TGG | - | chr1_2:3014157-3014176 | Msa0049630:five_prime_UTR | 50.0% | |
| CTGCCAAGCTTGAGAAGAAG+AGG | + | chr1_2:3014163-3014182 | None:intergenic | 50.0% | |
| CCTAGGACCAGTGAAGAGGT+AGG | + | chr1_2:3011066-3011085 | None:intergenic | 55.0% | |
| CCTACCTCTTCACTGGTCCT+AGG | - | chr1_2:3011063-3011082 | Msa0049630:three_prime_UTR | 55.0% | |
| ACACCTACCCAATGAGCACG+AGG | + | chr1_2:3011690-3011709 | None:intergenic | 55.0% | |
| ACACAGCACATGCAGCTGCT+CGG | - | chr1_2:3012192-3012211 | Msa0049630:intron | 55.0% | |
| ! | TCTGGGCTTGTTTGACACCG+AGG | - | chr1_2:3012707-3012726 | Msa0049630:CDS | 55.0% |
| ACACCGAGGTTGAAGCTGCA+AGG | - | chr1_2:3012721-3012740 | Msa0049630:intron | 55.0% | |
| GCATGGGGGAAACAAGCCTA+AGG | - | chr1_2:3013160-3013179 | Msa0049630:intron | 55.0% | |
| AGCAGCTATGGAAGCCGAGT+TGG | - | chr1_2:3014018-3014037 | Msa0049630:CDS | 55.0% | |
| ACTGCTGCTGCAGCATCATC+AGG | - | chr1_2:3014114-3014133 | Msa0049630:exon | 55.0% | |
| AGGGTCTCATGAGATTGCGG+AGG | + | chr1_2:3014197-3014216 | None:intergenic | 55.0% | |
| CGGCTTCCATAGCTGCTGCT+GGG | + | chr1_2:3014015-3014034 | None:intergenic | 60.0% | |
| TCGGCTTCCATAGCTGCTGC+TGG | + | chr1_2:3014016-3014035 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 3010903 | 3014534 | 3010903 | ID=Msa0049630;Name=Msa0049630 |
| chr1_2 | mRNA | 3010903 | 3014534 | 3010903 | ID=Msa0049630-mRNA-1;Parent=Msa0049630;Name=Msa0049630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=403|1|1|1|1|1|10|313|519 |
| chr1_2 | exon | 3010903 | 3011428 | 3010903 | ID=Msa0049630-mRNA-1:exon:709;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3011934 | 3012143 | 3011934 | ID=Msa0049630-mRNA-1:exon:708;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3012256 | 3012392 | 3012256 | ID=Msa0049630-mRNA-1:exon:707;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3012503 | 3012594 | 3012503 | ID=Msa0049630-mRNA-1:exon:706;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3012695 | 3012739 | 3012695 | ID=Msa0049630-mRNA-1:exon:705;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3012811 | 3012956 | 3012811 | ID=Msa0049630-mRNA-1:exon:704;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3013049 | 3013136 | 3013049 | ID=Msa0049630-mRNA-1:exon:703;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3013224 | 3013254 | 3013224 | ID=Msa0049630-mRNA-1:exon:702;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3013420 | 3013445 | 3013420 | ID=Msa0049630-mRNA-1:exon:701;Parent=Msa0049630-mRNA-1 |
| chr1_2 | exon | 3013560 | 3014534 | 3013560 | ID=Msa0049630-mRNA-1:exon:700;Parent=Msa0049630-mRNA-1 |
| chr1_2 | five_prime_UTR | 3014132 | 3014534 | 3014132 | ID=Msa0049630-mRNA-1:five_prime_utr;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3013560 | 3014131 | 3013560 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3013420 | 3013445 | 3013420 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3013224 | 3013254 | 3013224 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3013049 | 3013136 | 3013049 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3012811 | 3012956 | 3012811 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3012695 | 3012739 | 3012695 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3012503 | 3012594 | 3012503 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3012256 | 3012392 | 3012256 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3011934 | 3012143 | 3011934 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | CDS | 3011216 | 3011428 | 3011216 | ID=Msa0049630-mRNA-1:cds;Parent=Msa0049630-mRNA-1 |
| chr1_2 | three_prime_UTR | 3010903 | 3011215 | 3010903 | ID=Msa0049630-mRNA-1:three_prime_utr;Parent=Msa0049630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
