AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975340 MtrunA17_Chr6g0454081 99.194 124 1 0 11 134 45 168 6.04e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975340 AT3G29280.1 66.667 132 42 1 1 130 43 174 1.06e-62 190
Msa0975340 AT3G29280.2 62.411 141 42 2 1 130 43 183 1.41e-59 182

Find 43 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGGGCTGGATTT+TGG 0.147980 6_4:+9111732 Msa0975340:CDS
GTTGGAAAGATGACAATTTC+TGG 0.233986 6_4:+9111720 Msa0975340:CDS
TATTTAACTTAATAGCTTAA+TGG 0.248649 6_4:-9111812 None:intergenic
ATTTAACTTAATAGCTTAAT+GGG 0.305991 6_4:-9111811 None:intergenic
GCATCCATCCCAGCTAGTTT+TGG 0.340791 6_4:-9111299 None:intergenic
CGAGCACATGTTTCTATTCC+AGG 0.353050 6_4:-9111916 None:intergenic
CACAGGTATGGTTGAACAAA+AGG 0.398980 6_4:+9111190 Msa0975340:CDS
AAGTTCATGCCAAAACTAGC+TGG 0.442466 6_4:+9111290 Msa0975340:CDS
TTGGAAAGATGACAATTTCT+GGG 0.446900 6_4:+9111721 Msa0975340:CDS
CAACAAGGTAGCATACTAAA+GGG 0.454707 6_4:-9110494 None:intergenic
ATGCAGCTGAAGACCACATC+AGG 0.457770 6_4:+9111267 Msa0975340:CDS
CAAAATTACTGTAAAGAGAA+TGG 0.458889 6_4:-9110563 None:intergenic
ATGTGCTCGTCACTTATTGA+AGG 0.469025 6_4:+9111930 Msa0975340:three_prime_UTR
TCAACAAGGTAGCATACTAA+AGG 0.472790 6_4:-9110495 None:intergenic
GTGCGAAAGGGAATGCAGTA+AGG 0.476356 6_4:+9110659 Msa0975340:CDS
AAAGATGACAATTTCTGGGC+TGG 0.478819 6_4:+9111725 Msa0975340:CDS
CACTGCATTGATCATGCTCA+TGG 0.480055 6_4:+9110862 Msa0975340:CDS
TTGAATTATGCAGTTAACGT+TGG 0.489090 6_4:+9111702 Msa0975340:intron
AAACTATTCTGTAGAAAGGT+AGG 0.495438 6_4:+9111867 Msa0975340:three_prime_UTR
ATTGAATAATTACTTACGTA+TGG 0.499164 6_4:+9110602 Msa0975340:exon
GCAGTAAGGGTGAGGACTAT+CGG 0.514678 6_4:+9110673 Msa0975340:CDS
TAGAAAACTATTCTGTAGAA+AGG 0.514941 6_4:+9111863 Msa0975340:three_prime_UTR
TTGGCATGAACTTCCTGATG+TGG 0.518276 6_4:-9111280 None:intergenic
TGAAAGAATTGGAGTGCGAA+AGG 0.552769 6_4:+9110646 Msa0975340:CDS
CATGCCAAAACTAGCTGGGA+TGG 0.557559 6_4:+9111295 Msa0975340:CDS
GGTATGGTTGAACAAAAGGA+TGG 0.563367 6_4:+9111194 Msa0975340:CDS
GGATAAGGAGATCACAGGTA+TGG 0.582254 6_4:+9111178 Msa0975340:CDS
GAAAGAATTGGAGTGCGAAA+GGG 0.583284 6_4:+9110647 Msa0975340:CDS
AAGGGAATGCAGTAAGGGTG+AGG 0.592308 6_4:+9110665 Msa0975340:CDS
GCCACTGTTGTGGAGTGCAA+AGG 0.593450 6_4:+9110820 Msa0975340:CDS
AGTTCATGCCAAAACTAGCT+GGG 0.594981 6_4:+9111291 Msa0975340:CDS
TGCGAAAGGGAATGCAGTAA+GGG 0.601067 6_4:+9110660 Msa0975340:CDS
ACTGCATTGATCATGCTCAT+GGG 0.609253 6_4:+9110863 Msa0975340:CDS
AGTTGGGATAAGGAGATCAC+AGG 0.611502 6_4:+9111173 Msa0975340:intron
TCTCATGATTCTGCTAAGTG+AGG 0.620530 6_4:+9110540 Msa0975340:five_prime_UTR
ACCTTTGCACTCCACAACAG+TGG 0.620667 6_4:-9110821 None:intergenic
AAAAGAACAAGCCACTGTTG+TGG 0.622805 6_4:+9110810 Msa0975340:CDS
CATGAGCATGATCAATGCAG+TGG 0.642794 6_4:-9110861 None:intergenic
CTAGCTGGGATGGATGCTGT+TGG 0.649663 6_4:+9111305 Msa0975340:CDS
GTATGGTTGAACAAAAGGAT+GGG 0.653224 6_4:+9111195 Msa0975340:CDS
GCTGTGACTATCGTCTCTCA+AGG 0.653772 6_4:+9110462 Msa0975340:five_prime_UTR
AACATACAAATTAATCAACA+AGG 0.684646 6_4:-9110509 None:intergenic
GTGTGAGACACTGAAAGCTG+AGG 0.748209 6_4:+9111244 Msa0975340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_4:9111374-9111393 Msa0975340:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_4:9111522-9111541 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_4:9111814-9111833 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_4:9111815-9111834 None:intergenic 15.0%
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_4:9111374-9111393 Msa0975340:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_4:9111522-9111541 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_4:9111814-9111833 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_4:9111815-9111834 None:intergenic 15.0%
!! AACATACAAATTAATCAACA+AGG - chr6_4:9110512-9110531 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_4:9110602-9110621 Msa0975340:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_4:9110785-9110804 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_4:9110950-9110969 Msa0975340:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_4:9111111-9111130 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_4:9111515-9111534 Msa0975340:intron 20.0%
!! AACATACAAATTAATCAACA+AGG - chr6_4:9110512-9110531 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_4:9110602-9110621 Msa0975340:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_4:9110785-9110804 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_4:9110950-9110969 Msa0975340:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_4:9111111-9111130 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_4:9111515-9111534 Msa0975340:intron 20.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_4:9110566-9110585 None:intergenic 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_4:9110635-9110654 Msa0975340:CDS 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_4:9111863-9111882 Msa0975340:three_prime_UTR 25.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_4:9110566-9110585 None:intergenic 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_4:9110635-9110654 Msa0975340:CDS 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_4:9111863-9111882 Msa0975340:three_prime_UTR 25.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_4:9110631-9110650 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_4:9110931-9110950 Msa0975340:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_4:9111097-9111116 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_4:9111139-9111158 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_4:9111157-9111176 Msa0975340:intron 30.0%
GTTATAGTTTCATGTCAGTT+CGG + chr6_4:9111408-9111427 Msa0975340:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_4:9111644-9111663 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_4:9111675-9111694 Msa0975340:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_4:9111702-9111721 Msa0975340:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_4:9111721-9111740 Msa0975340:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_4:9111867-9111886 Msa0975340:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_4:9111906-9111925 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_4:9111907-9111926 None:intergenic 30.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_4:9110631-9110650 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_4:9110931-9110950 Msa0975340:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_4:9111097-9111116 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_4:9111139-9111158 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_4:9111157-9111176 Msa0975340:intron 30.0%
GTTATAGTTTCATGTCAGTT+CGG + chr6_4:9111408-9111427 Msa0975340:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_4:9111644-9111663 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_4:9111675-9111694 Msa0975340:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_4:9111702-9111721 Msa0975340:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_4:9111721-9111740 Msa0975340:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_4:9111867-9111886 Msa0975340:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_4:9111906-9111925 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_4:9111907-9111926 None:intergenic 30.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_4:9110497-9110516 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_4:9110498-9110517 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_4:9110623-9110642 Msa0975340:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_4:9111089-9111108 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_4:9111156-9111175 Msa0975340:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_4:9111166-9111185 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_4:9111163-9111182 Msa0975340:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_4:9111195-9111214 Msa0975340:CDS 35.0%
TTCAGTTGTGACAATTGGAA+CGG + chr6_4:9111431-9111450 Msa0975340:intron 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_4:9111678-9111697 Msa0975340:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_4:9111720-9111739 Msa0975340:CDS 35.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_4:9110497-9110516 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_4:9110498-9110517 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_4:9110623-9110642 Msa0975340:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_4:9111089-9111108 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_4:9111156-9111175 Msa0975340:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_4:9111166-9111185 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_4:9111163-9111182 Msa0975340:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_4:9111195-9111214 Msa0975340:CDS 35.0%
TTCAGTTGTGACAATTGGAA+CGG + chr6_4:9111431-9111450 Msa0975340:intron 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_4:9111678-9111697 Msa0975340:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_4:9111720-9111739 Msa0975340:CDS 35.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_4:9110540-9110559 Msa0975340:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_4:9110646-9110665 Msa0975340:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_4:9110647-9110666 Msa0975340:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_4:9110810-9110829 Msa0975340:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_4:9110863-9110882 Msa0975340:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_4:9110910-9110929 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_4:9110907-9110926 Msa0975340:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_4:9111082-9111101 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_4:9111190-9111209 Msa0975340:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_4:9111194-9111213 Msa0975340:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_4:9111290-9111309 Msa0975340:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_4:9111291-9111310 Msa0975340:CDS 40.0%
TTCGGTTCAGTTGTGACAAT+TGG + chr6_4:9111426-9111445 Msa0975340:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_4:9111725-9111744 Msa0975340:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_4:9111732-9111751 Msa0975340:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_4:9111898-9111917 Msa0975340:three_prime_UTR 40.0%
ATGTGCTCGTCACTTATTGA+AGG + chr6_4:9111930-9111949 Msa0975340:three_prime_UTR 40.0%
CTCGTCACTTATTGAAGGAA+TGG + chr6_4:9111935-9111954 Msa0975340:three_prime_UTR 40.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_4:9110540-9110559 Msa0975340:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_4:9110646-9110665 Msa0975340:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_4:9110647-9110666 Msa0975340:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_4:9110810-9110829 Msa0975340:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_4:9110863-9110882 Msa0975340:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_4:9110910-9110929 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_4:9110907-9110926 Msa0975340:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_4:9111082-9111101 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_4:9111190-9111209 Msa0975340:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_4:9111194-9111213 Msa0975340:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_4:9111290-9111309 Msa0975340:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_4:9111291-9111310 Msa0975340:CDS 40.0%
TTCGGTTCAGTTGTGACAAT+TGG + chr6_4:9111426-9111445 Msa0975340:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_4:9111725-9111744 Msa0975340:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_4:9111732-9111751 Msa0975340:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_4:9111898-9111917 Msa0975340:three_prime_UTR 40.0%
ATGTGCTCGTCACTTATTGA+AGG + chr6_4:9111930-9111949 Msa0975340:three_prime_UTR 40.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_4:9110660-9110679 Msa0975340:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_4:9110864-9110883 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_4:9110862-9110881 Msa0975340:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_4:9111077-9111096 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_4:9111173-9111192 Msa0975340:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_4:9111178-9111197 Msa0975340:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_4:9111283-9111302 None:intergenic 45.0%
GTGACAATTGGAACGGAATC+TGG + chr6_4:9111438-9111457 Msa0975340:intron 45.0%
! CGAGCACATGTTTCTATTCC+AGG - chr6_4:9111919-9111938 None:intergenic 45.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_4:9110660-9110679 Msa0975340:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_4:9110864-9110883 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_4:9110862-9110881 Msa0975340:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_4:9111077-9111096 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_4:9111173-9111192 Msa0975340:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_4:9111178-9111197 Msa0975340:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_4:9111283-9111302 None:intergenic 45.0%
GTGACAATTGGAACGGAATC+TGG + chr6_4:9111438-9111457 Msa0975340:intron 45.0%
! CGAGCACATGTTTCTATTCC+AGG - chr6_4:9111919-9111938 None:intergenic 45.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_4:9110462-9110481 Msa0975340:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_4:9110659-9110678 Msa0975340:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_4:9110665-9110684 Msa0975340:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_4:9110673-9110692 Msa0975340:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_4:9110824-9110843 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_4:9111244-9111263 Msa0975340:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_4:9111267-9111286 Msa0975340:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_4:9111295-9111314 Msa0975340:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_4:9111302-9111321 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_4:9111593-9111612 Msa0975340:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_4:9111594-9111613 Msa0975340:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_4:9111605-9111624 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_4:9111606-9111625 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_4:9111607-9111626 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_4:9111606-9111625 Msa0975340:intron 50.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_4:9110462-9110481 Msa0975340:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_4:9110659-9110678 Msa0975340:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_4:9110665-9110684 Msa0975340:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_4:9110673-9110692 Msa0975340:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_4:9110824-9110843 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_4:9111244-9111263 Msa0975340:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_4:9111267-9111286 Msa0975340:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_4:9111295-9111314 Msa0975340:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_4:9111302-9111321 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_4:9111593-9111612 Msa0975340:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_4:9111594-9111613 Msa0975340:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_4:9111605-9111624 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_4:9111606-9111625 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_4:9111607-9111626 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_4:9111606-9111625 Msa0975340:intron 50.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_4:9110820-9110839 Msa0975340:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_4:9111305-9111324 Msa0975340:CDS 55.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_4:9110820-9110839 Msa0975340:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_4:9111305-9111324 Msa0975340:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9110430 9111956 9110430 ID=Msa0975340;Name=Msa0975340
chr6_4 mRNA 9110430 9111956 9110430 ID=Msa0975340-mRNA-1;Parent=Msa0975340;Name=Msa0975340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=191|1|1|1|1|1|4|174|134
chr6_4 exon 9110430 9110725 9110430 ID=Msa0975340-mRNA-1:exon:3249;Parent=Msa0975340-mRNA-1
chr6_4 exon 9110805 9110884 9110805 ID=Msa0975340-mRNA-1:exon:3250;Parent=Msa0975340-mRNA-1
chr6_4 exon 9111175 9111326 9111175 ID=Msa0975340-mRNA-1:exon:3251;Parent=Msa0975340-mRNA-1
chr6_4 exon 9111715 9111956 9111715 ID=Msa0975340-mRNA-1:exon:3252;Parent=Msa0975340-mRNA-1
chr6_4 five_prime_UTR 9110430 9110620 9110430 ID=Msa0975340-mRNA-1:five_prime_utr;Parent=Msa0975340-mRNA-1
chr6_4 CDS 9110621 9110725 9110621 ID=Msa0975340-mRNA-1:cds;Parent=Msa0975340-mRNA-1
chr6_4 CDS 9110805 9110884 9110805 ID=Msa0975340-mRNA-1:cds;Parent=Msa0975340-mRNA-1
chr6_4 CDS 9111175 9111326 9111175 ID=Msa0975340-mRNA-1:cds;Parent=Msa0975340-mRNA-1
chr6_4 CDS 9111715 9111782 9111715 ID=Msa0975340-mRNA-1:cds;Parent=Msa0975340-mRNA-1
chr6_4 three_prime_UTR 9111783 9111956 9111783 ID=Msa0975340-mRNA-1:three_prime_utr;Parent=Msa0975340-mRNA-1
Gene Sequence

>Msa0975340

ATGGTTTCCTCTGTCTTTTTTATGGTGAAAGAATTGGAGTGCGAAAGGGAATGCAGTAAGGGTGAGGACTATCGGCTAATCAAACTCACAATCACAGATTTCAATACGAAAAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGTCATGATGCTGCTCGATTCCACTGCATTGATCATGCTCATGGTTGGGATAAGGAGATCACAGGTATGGTTGAACAAAAGGATGGGAAGAAAAGAATCACAGTTTCATTTGAGTGTGAGACACTGAAAGCTGAGGATGCAGCTGAAGACCACATCAGGAAGTTCATGCCAAAACTAGCTGGGATGGATGCTGTTGTTAACGTTGGAAAGATGACAATTTCTGGGCTGGATTTTGGAGCAGATGAAGATGATGATACTGAGTAG

Protein sequence

>Msa0975340

MVSSVFFMVKELECERECSKGEDYRLIKLTITDFNTKKEQATVVECKGHDAARFHCIDHAHGWDKEITGMVEQKDGKKRITVSFECETLKAEDAAEDHIRKFMPKLAGMDAVVNVGKMTISGLDFGADEDDDTE*