AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0764770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764770 MtrunA17_Chr5g0415341 96.622 296 10 0 1 296 1 296 0.0 589
Msa0764770 MtrunA17_Chr8g0381971 39.209 278 141 8 1 266 1 262 2.64e-55 181
Msa0764770 MtrunA17_Chr4g0069121 31.276 243 151 8 27 266 34 263 1.74e-25 102
Msa0764770 MtrunA17_Chr4g0058901 27.358 318 192 14 3 295 8 311 1.78e-24 100
Msa0764770 MtrunA17_Chr4g0075211 30.000 260 149 11 23 266 34 276 9.50e-21 90.5
Msa0764770 MtrunA17_Chr2g0288891 28.244 262 151 12 23 266 20 262 1.95e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764770 AT1G10380.1 53.047 279 121 7 25 296 27 302 3.01e-96 286
Msa0764770 AT1G10380.2 57.831 249 97 6 25 268 27 272 1.14e-93 280
Msa0764770 AT3G17350.1 33.333 246 145 9 27 264 31 265 1.67e-24 100
Msa0764770 AT3G17350.2 33.333 246 145 9 27 264 31 265 1.84e-24 100
Msa0764770 AT5G50290.1 30.147 272 165 11 10 266 5 266 5.74e-23 96.7
Msa0764770 AT1G11915.1 26.421 299 181 12 10 288 14 293 4.06e-17 80.9

Find 71 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCCAAATTCCATAAAA+AGG 0.207271 5_2:+25182165 None:intergenic
GCATAGTCAATTGAGGTAAT+AGG 0.216590 5_2:+25183377 None:intergenic
ATGAGGGAGGACAGGGAATA+AGG 0.252921 5_2:+25183628 None:intergenic
ACAATCTACTAAAGCGAATA+TGG 0.279440 5_2:+25183244 None:intergenic
TTCACATCATCTTACAATAA+TGG 0.287235 5_2:-25182789 Msa0764770:CDS
GTTCTTTGCCACAATTTCTT+TGG 0.298152 5_2:+25183510 None:intergenic
GAAGCTAGGGTCGCCGCAAC+CGG 0.302813 5_2:+25183460 None:intergenic
GTGCTATCATCGAAAGTAAA+AGG 0.329017 5_2:+25183266 None:intergenic
CTTCAATGCAGTTCATATAC+AGG 0.342561 5_2:-25183017 Msa0764770:CDS
AATAGGACACAAGAAATAAA+TGG 0.343228 5_2:+25182286 None:intergenic
CATAGTCAATTGAGGTAATA+GGG 0.351341 5_2:+25183378 None:intergenic
GCAAAGGCTTTGGCTTAGAT+TGG 0.353620 5_2:-25183295 Msa0764770:CDS
GTGATGTTATGTATTCTTGT+AGG 0.354020 5_2:-25183133 Msa0764770:CDS
AGGAAGTAGGAAAAGGAAAA+TGG 0.359989 5_2:+25183556 None:intergenic
TTCTTTGGCACATTTGAGAT+TGG 0.364687 5_2:+25183525 None:intergenic
GATCCTCAAAAGTGGAACTA+TGG 0.374420 5_2:-25182966 Msa0764770:CDS
TTCGGTAGCGGCCCCGGTTG+CGG 0.383447 5_2:-25183473 Msa0764770:CDS
GTTATATGTGGTTGGAAGCT+AGG 0.413683 5_2:+25183446 None:intergenic
ATGAGAGAATGAGGGAGGAC+AGG 0.425062 5_2:+25183620 None:intergenic
AGGTTAATATTAGTACTAAT+AGG 0.427315 5_2:+25183110 None:intergenic
TACCCTTTCGGTAGCGGCCC+CGG 0.428105 5_2:-25183479 Msa0764770:CDS
GTTTATACACCGGTTAATCT+TGG 0.430829 5_2:-25183068 Msa0764770:CDS
TAAACACAACATGTCGAAAT+CGG 0.436820 5_2:+25183086 None:intergenic
GCTGCATGTGAAAGGAGCTT+TGG 0.444173 5_2:-25182891 Msa0764770:CDS
TTATTTCTTGTGTCCTATTG+TGG 0.446874 5_2:-25182282 Msa0764770:three_prime_UTR
TGAGAGAATGAGGGAGGACA+GGG 0.452599 5_2:+25183621 None:intergenic
CTCATCTTATAAGCAATTGA+TGG 0.460174 5_2:-25182426 Msa0764770:exon
AACAAATTGATCCTCAAAAG+TGG 0.460285 5_2:-25182974 Msa0764770:CDS
GTAGTGGTGTTAATTCCATT+AGG 0.460938 5_2:+25182822 None:intergenic
AAGCTAGGGTCGCCGCAACC+GGG 0.463812 5_2:+25183461 None:intergenic
GTGAAAACCTTTACAATCCT+AGG 0.472272 5_2:+25182382 None:intergenic
GAACCTCTCAAGTACCCTTT+CGG 0.476764 5_2:-25183491 Msa0764770:CDS
AAAGCTGGACCAAGATTAAC+CGG 0.476906 5_2:+25183059 None:intergenic
TCAAAGAAGGAAGTAGGAAA+AGG 0.481402 5_2:+25183549 None:intergenic
TTGATTTGCATAGTCAATTG+AGG 0.482998 5_2:+25183370 None:intergenic
ATTGGATCAAAGAAGGAAGT+AGG 0.483664 5_2:+25183543 None:intergenic
ATGGTGAGAAGAGGAAGTGA+AGG 0.485023 5_2:+25183575 None:intergenic
ACTCTACCTAGCAAAGGCTT+TGG 0.486666 5_2:-25183305 Msa0764770:CDS
ATTTGAGATTGGATCAAAGA+AGG 0.498634 5_2:+25183536 None:intergenic
TGAAGATCCATATCAAAAGC+TGG 0.499024 5_2:+25183044 None:intergenic
TGTTGGCTGCAAGTTATATG+TGG 0.504485 5_2:+25183434 None:intergenic
ATGATCACCTAGGATTGTAA+AGG 0.507640 5_2:-25182389 Msa0764770:three_prime_UTR
TTATATGTGGTTGGAAGCTA+GGG 0.516561 5_2:+25183447 None:intergenic
AACCGGGGCCGCTACCGAAA+GGG 0.520766 5_2:+25183477 None:intergenic
CTCAAGTACCCTTTCGGTAG+CGG 0.533088 5_2:-25183485 Msa0764770:CDS
CAACCGGGGCCGCTACCGAA+AGG 0.537917 5_2:+25183476 None:intergenic
AAATCAAGAAGTTATGATGA+TGG 0.541719 5_2:-25183197 Msa0764770:CDS
AAAAGGAAAATGGTGAGAAG+AGG 0.550845 5_2:+25183566 None:intergenic
CAAATGTGCCAAAGAAATTG+TGG 0.553792 5_2:-25183518 Msa0764770:CDS
TCACATGCAGCACAAGAGCT+AGG 0.560587 5_2:+25182903 None:intergenic
GACATGTTGTGTTTATACAC+CGG 0.561125 5_2:-25183078 Msa0764770:CDS
GCTCTTGTGCTGCATGTGAA+AGG 0.562347 5_2:-25182899 Msa0764770:CDS
GGCTGCAAGTTATATGTGGT+TGG 0.563811 5_2:+25183438 None:intergenic
GGAGCCTGTGTGTGTTGTGA+AGG 0.568111 5_2:+25183403 None:intergenic
TGTGAATGAGAGAATGAGGG+AGG 0.571879 5_2:+25183615 None:intergenic
TCTAAGCCAAAGCCTTTGCT+AGG 0.589191 5_2:+25183299 None:intergenic
TGGTGAGAAGAGGAAGTGAA+GGG 0.589263 5_2:+25183576 None:intergenic
AGCTAGGGTCGCCGCAACCG+GGG 0.590395 5_2:+25183462 None:intergenic
CAAGAACATGTTGACATGGT+GGG 0.597427 5_2:+25183329 None:intergenic
CACAACATGTCGAAATCGGA+AGG 0.597606 5_2:+25183090 None:intergenic
CTCACCTTCACAACACACAC+AGG 0.609375 5_2:-25183407 Msa0764770:CDS
TCTTGTACTCTACCTAGCAA+AGG 0.614050 5_2:-25183311 Msa0764770:CDS
GTCAATTGAGGTAATAGGGT+AGG 0.619560 5_2:+25183382 None:intergenic
CTACCGAAAGGGTACTTGAG+AGG 0.634715 5_2:+25183488 None:intergenic
AATCAAGCTTATGATCACCT+AGG 0.658302 5_2:-25182399 Msa0764770:three_prime_UTR
ACAAGAACATGTTGACATGG+TGG 0.665001 5_2:+25183328 None:intergenic
GAATTTGGAATGGACTGACT+AGG 0.665769 5_2:-25182155 Msa0764770:three_prime_UTR
AGTACAAGAACATGTTGACA+TGG 0.667853 5_2:+25183325 None:intergenic
ATCATAATGATAATGAAACA+AGG 0.679852 5_2:+25182118 None:intergenic
TGTGAAGAAACAATCTGTAG+TGG 0.691455 5_2:+25182806 None:intergenic
TTTGGAATGGACTGACTAGG+TGG 0.705580 5_2:-25182152 Msa0764770:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTAAAATTATTAT+CGG - chr5_2:25183172-25183191 Msa0764770:CDS 0.0%
!!! TAATATTTTAAAATTATTAT+CGG - chr5_2:25183172-25183191 Msa0764770:CDS 0.0%
!!! TAAGATTATTTTTTTTGAAA+AGG - chr5_2:25183065-25183084 Msa0764770:CDS 10.0%
!!! TAAGATTATTTTTTTTGAAA+AGG - chr5_2:25183065-25183084 Msa0764770:CDS 10.0%
!! TAAAAATGAATGAAAAAAGT+AGG + chr5_2:25183241-25183260 None:intergenic 15.0%
!! TAAAAATGAATGAAAAAAGT+AGG + chr5_2:25183241-25183260 None:intergenic 15.0%
!! AGGTTAATATTAGTACTAAT+AGG + chr5_2:25182653-25182672 None:intergenic 20.0%
!!! TACAATAATGGTTTTAGAAA+TGG - chr5_2:25182983-25183002 Msa0764770:CDS 20.0%
!!! ACACTAAAATTTAAGATTAG+AGG - chr5_2:25183089-25183108 Msa0764770:CDS 20.0%
!!! CACTAAAATTTAAGATTAGA+GGG - chr5_2:25183090-25183109 Msa0764770:CDS 20.0%
!!! TTAAGTGTATGGAATTTTAA+TGG - chr5_2:25183404-25183423 Msa0764770:CDS 20.0%
!!! AAAAAGGGTTTTTTGTTTTT+GGG + chr5_2:25183582-25183601 None:intergenic 20.0%
!!! TAAAAAGGGTTTTTTGTTTT+TGG + chr5_2:25183583-25183602 None:intergenic 20.0%
!!! AAAACAAAAAACCCTTTTTA+TGG - chr5_2:25183583-25183602 Msa0764770:CDS 20.0%
!!! ATCATAATGATAATGAAACA+AGG + chr5_2:25183645-25183664 None:intergenic 20.0%
!! AGGTTAATATTAGTACTAAT+AGG + chr5_2:25182653-25182672 None:intergenic 20.0%
!!! TACAATAATGGTTTTAGAAA+TGG - chr5_2:25182983-25183002 Msa0764770:CDS 20.0%
!!! ACACTAAAATTTAAGATTAG+AGG - chr5_2:25183089-25183108 Msa0764770:CDS 20.0%
!!! CACTAAAATTTAAGATTAGA+GGG - chr5_2:25183090-25183109 Msa0764770:CDS 20.0%
!!! TTAAGTGTATGGAATTTTAA+TGG - chr5_2:25183404-25183423 Msa0764770:CDS 20.0%
!!! AAAAAGGGTTTTTTGTTTTT+GGG + chr5_2:25183582-25183601 None:intergenic 20.0%
!!! TAAAAAGGGTTTTTTGTTTT+TGG + chr5_2:25183583-25183602 None:intergenic 20.0%
!!! AAAACAAAAAACCCTTTTTA+TGG - chr5_2:25183583-25183602 Msa0764770:CDS 20.0%
!!! ATCATAATGATAATGAAACA+AGG + chr5_2:25183645-25183664 None:intergenic 20.0%
! AAATCAAGAAGTTATGATGA+TGG - chr5_2:25182563-25182582 Msa0764770:intron 25.0%
! TTCACATCATCTTACAATAA+TGG - chr5_2:25182971-25182990 Msa0764770:CDS 25.0%
! TGCAATTGACAAATAAGAAA+GGG + chr5_2:25183023-25183042 None:intergenic 25.0%
! ATGCAATTGACAAATAAGAA+AGG + chr5_2:25183024-25183043 None:intergenic 25.0%
!!! TCATTTTTAATGACTTGTTC+TGG - chr5_2:25183252-25183271 Msa0764770:CDS 25.0%
!!! GTTTTCACATTTTAAGTGTA+TGG - chr5_2:25183393-25183412 Msa0764770:CDS 25.0%
! AATAGGACACAAGAAATAAA+TGG + chr5_2:25183477-25183496 None:intergenic 25.0%
!!! AAAAGGGTTTTTTGTTTTTG+GGG + chr5_2:25183581-25183600 None:intergenic 25.0%
!! AAAACCCTTTTTATGGAATT+TGG - chr5_2:25183590-25183609 Msa0764770:CDS 25.0%
! CATTCCAAATTCCATAAAAA+GGG + chr5_2:25183597-25183616 None:intergenic 25.0%
! AAATCAAGAAGTTATGATGA+TGG - chr5_2:25182563-25182582 Msa0764770:intron 25.0%
! TTCACATCATCTTACAATAA+TGG - chr5_2:25182971-25182990 Msa0764770:CDS 25.0%
! TGCAATTGACAAATAAGAAA+GGG + chr5_2:25183023-25183042 None:intergenic 25.0%
! ATGCAATTGACAAATAAGAA+AGG + chr5_2:25183024-25183043 None:intergenic 25.0%
!!! TCATTTTTAATGACTTGTTC+TGG - chr5_2:25183252-25183271 Msa0764770:CDS 25.0%
!!! GTTTTCACATTTTAAGTGTA+TGG - chr5_2:25183393-25183412 Msa0764770:CDS 25.0%
! AATAGGACACAAGAAATAAA+TGG + chr5_2:25183477-25183496 None:intergenic 25.0%
!!! AAAAGGGTTTTTTGTTTTTG+GGG + chr5_2:25183581-25183600 None:intergenic 25.0%
!! AAAACCCTTTTTATGGAATT+TGG - chr5_2:25183590-25183609 Msa0764770:CDS 25.0%
! CATTCCAAATTCCATAAAAA+GGG + chr5_2:25183597-25183616 None:intergenic 25.0%
! TTTTGTGAATGAGAGAATGA+GGG + chr5_2:25182151-25182170 None:intergenic 30.0%
! ATTTTGTGAATGAGAGAATG+AGG + chr5_2:25182152-25182171 None:intergenic 30.0%
! ATTTGAGATTGGATCAAAGA+AGG + chr5_2:25182227-25182246 None:intergenic 30.0%
CATAGTCAATTGAGGTAATA+GGG + chr5_2:25182385-25182404 None:intergenic 30.0%
!! TTGATTTGCATAGTCAATTG+AGG + chr5_2:25182393-25182412 None:intergenic 30.0%
ACAATCTACTAAAGCGAATA+TGG + chr5_2:25182519-25182538 None:intergenic 30.0%
!! ATTTTGATCACATTGAAGCT+TGG + chr5_2:25182597-25182616 None:intergenic 30.0%
GTGATGTTATGTATTCTTGT+AGG - chr5_2:25182627-25182646 Msa0764770:intron 30.0%
TAAACACAACATGTCGAAAT+CGG + chr5_2:25182677-25182696 None:intergenic 30.0%
AACAAATTGATCCTCAAAAG+TGG - chr5_2:25182786-25182805 Msa0764770:CDS 30.0%
! TTTTTATGCAACTGTCCTAA+TGG - chr5_2:25182923-25182942 Msa0764770:CDS 30.0%
ATTGAATGTAACAACTGTGT+TGG + chr5_2:25183152-25183171 None:intergenic 30.0%
! TATAGAGTACTACACAAACA+CGG + chr5_2:25183213-25183232 None:intergenic 30.0%
CTCATCTTATAAGCAATTGA+TGG - chr5_2:25183334-25183353 Msa0764770:CDS 30.0%
!!! TGGAATTTTAATGGATTGCA+TGG - chr5_2:25183413-25183432 Msa0764770:CDS 30.0%
!!! GGAATTTTAATGGATTGCAT+GGG - chr5_2:25183414-25183433 Msa0764770:CDS 30.0%
!!! GAATTTTAATGGATTGCATG+GGG - chr5_2:25183415-25183434 Msa0764770:CDS 30.0%
!!! AATTTTAATGGATTGCATGG+GGG - chr5_2:25183416-25183435 Msa0764770:CDS 30.0%
! TTATTTCTTGTGTCCTATTG+TGG - chr5_2:25183478-25183497 Msa0764770:CDS 30.0%
CCATTCCAAATTCCATAAAA+AGG + chr5_2:25183598-25183617 None:intergenic 30.0%
! CCTTTTTATGGAATTTGGAA+TGG - chr5_2:25183595-25183614 Msa0764770:exon 30.0%
! TTTTGTGAATGAGAGAATGA+GGG + chr5_2:25182151-25182170 None:intergenic 30.0%
! ATTTTGTGAATGAGAGAATG+AGG + chr5_2:25182152-25182171 None:intergenic 30.0%
! ATTTGAGATTGGATCAAAGA+AGG + chr5_2:25182227-25182246 None:intergenic 30.0%
CATAGTCAATTGAGGTAATA+GGG + chr5_2:25182385-25182404 None:intergenic 30.0%
!! TTGATTTGCATAGTCAATTG+AGG + chr5_2:25182393-25182412 None:intergenic 30.0%
ACAATCTACTAAAGCGAATA+TGG + chr5_2:25182519-25182538 None:intergenic 30.0%
!! ATTTTGATCACATTGAAGCT+TGG + chr5_2:25182597-25182616 None:intergenic 30.0%
GTGATGTTATGTATTCTTGT+AGG - chr5_2:25182627-25182646 Msa0764770:intron 30.0%
TAAACACAACATGTCGAAAT+CGG + chr5_2:25182677-25182696 None:intergenic 30.0%
AACAAATTGATCCTCAAAAG+TGG - chr5_2:25182786-25182805 Msa0764770:CDS 30.0%
! TTTTTATGCAACTGTCCTAA+TGG - chr5_2:25182923-25182942 Msa0764770:CDS 30.0%
ATTGAATGTAACAACTGTGT+TGG + chr5_2:25183152-25183171 None:intergenic 30.0%
! TATAGAGTACTACACAAACA+CGG + chr5_2:25183213-25183232 None:intergenic 30.0%
CTCATCTTATAAGCAATTGA+TGG - chr5_2:25183334-25183353 Msa0764770:CDS 30.0%
!!! TGGAATTTTAATGGATTGCA+TGG - chr5_2:25183413-25183432 Msa0764770:CDS 30.0%
!!! GGAATTTTAATGGATTGCAT+GGG - chr5_2:25183414-25183433 Msa0764770:CDS 30.0%
!!! GAATTTTAATGGATTGCATG+GGG - chr5_2:25183415-25183434 Msa0764770:CDS 30.0%
!!! AATTTTAATGGATTGCATGG+GGG - chr5_2:25183416-25183435 Msa0764770:CDS 30.0%
! TTATTTCTTGTGTCCTATTG+TGG - chr5_2:25183478-25183497 Msa0764770:CDS 30.0%
CCATTCCAAATTCCATAAAA+AGG + chr5_2:25183598-25183617 None:intergenic 30.0%
! CCTTTTTATGGAATTTGGAA+TGG - chr5_2:25183595-25183614 Msa0764770:exon 30.0%
AAAAGGAAAATGGTGAGAAG+AGG + chr5_2:25182197-25182216 None:intergenic 35.0%
AGGAAGTAGGAAAAGGAAAA+TGG + chr5_2:25182207-25182226 None:intergenic 35.0%
TCAAAGAAGGAAGTAGGAAA+AGG + chr5_2:25182214-25182233 None:intergenic 35.0%
ATTGGATCAAAGAAGGAAGT+AGG + chr5_2:25182220-25182239 None:intergenic 35.0%
! TTCTTTGGCACATTTGAGAT+TGG + chr5_2:25182238-25182257 None:intergenic 35.0%
CAAATGTGCCAAAGAAATTG+TGG - chr5_2:25182242-25182261 Msa0764770:three_prime_UTR 35.0%
GTTCTTTGCCACAATTTCTT+TGG + chr5_2:25182253-25182272 None:intergenic 35.0%
TTATATGTGGTTGGAAGCTA+GGG + chr5_2:25182316-25182335 None:intergenic 35.0%
! TTGTGAAGGTGAGTTTTTGT+TGG + chr5_2:25182346-25182365 None:intergenic 35.0%
GCATAGTCAATTGAGGTAAT+AGG + chr5_2:25182386-25182405 None:intergenic 35.0%
AGTACAAGAACATGTTGACA+TGG + chr5_2:25182438-25182457 None:intergenic 35.0%
GTGCTATCATCGAAAGTAAA+AGG + chr5_2:25182497-25182516 None:intergenic 35.0%
GACATGTTGTGTTTATACAC+CGG - chr5_2:25182682-25182701 Msa0764770:intron 35.0%
! GTTTATACACCGGTTAATCT+TGG - chr5_2:25182692-25182711 Msa0764770:intron 35.0%
TGAAGATCCATATCAAAAGC+TGG + chr5_2:25182719-25182738 None:intergenic 35.0%
CTTCAATGCAGTTCATATAC+AGG - chr5_2:25182743-25182762 Msa0764770:intron 35.0%
!! ATTCCATAGTTCCACTTTTG+AGG + chr5_2:25182800-25182819 None:intergenic 35.0%
! GTAGTGGTGTTAATTCCATT+AGG + chr5_2:25182941-25182960 None:intergenic 35.0%
TGTGAAGAAACAATCTGTAG+TGG + chr5_2:25182957-25182976 None:intergenic 35.0%
!! ATTATTATCGGTGTTGTGTC+AGG - chr5_2:25183184-25183203 Msa0764770:CDS 35.0%
! GGATGATATATGCTTTTGCA+TGG - chr5_2:25183299-25183318 Msa0764770:CDS 35.0%
! CTTTTGCATGGTCTTTGATT+AGG - chr5_2:25183311-25183330 Msa0764770:CDS 35.0%
AATCAAGCTTATGATCACCT+AGG - chr5_2:25183361-25183380 Msa0764770:CDS 35.0%
ATGATCACCTAGGATTGTAA+AGG - chr5_2:25183371-25183390 Msa0764770:CDS 35.0%
GTGAAAACCTTTACAATCCT+AGG + chr5_2:25183381-25183400 None:intergenic 35.0%
AAAAGGAAAATGGTGAGAAG+AGG + chr5_2:25182197-25182216 None:intergenic 35.0%
AGGAAGTAGGAAAAGGAAAA+TGG + chr5_2:25182207-25182226 None:intergenic 35.0%
TCAAAGAAGGAAGTAGGAAA+AGG + chr5_2:25182214-25182233 None:intergenic 35.0%
ATTGGATCAAAGAAGGAAGT+AGG + chr5_2:25182220-25182239 None:intergenic 35.0%
! TTCTTTGGCACATTTGAGAT+TGG + chr5_2:25182238-25182257 None:intergenic 35.0%
CAAATGTGCCAAAGAAATTG+TGG - chr5_2:25182242-25182261 Msa0764770:three_prime_UTR 35.0%
GTTCTTTGCCACAATTTCTT+TGG + chr5_2:25182253-25182272 None:intergenic 35.0%
TTATATGTGGTTGGAAGCTA+GGG + chr5_2:25182316-25182335 None:intergenic 35.0%
! TTGTGAAGGTGAGTTTTTGT+TGG + chr5_2:25182346-25182365 None:intergenic 35.0%
GCATAGTCAATTGAGGTAAT+AGG + chr5_2:25182386-25182405 None:intergenic 35.0%
AGTACAAGAACATGTTGACA+TGG + chr5_2:25182438-25182457 None:intergenic 35.0%
GTGCTATCATCGAAAGTAAA+AGG + chr5_2:25182497-25182516 None:intergenic 35.0%
GACATGTTGTGTTTATACAC+CGG - chr5_2:25182682-25182701 Msa0764770:intron 35.0%
! GTTTATACACCGGTTAATCT+TGG - chr5_2:25182692-25182711 Msa0764770:intron 35.0%
TGAAGATCCATATCAAAAGC+TGG + chr5_2:25182719-25182738 None:intergenic 35.0%
CTTCAATGCAGTTCATATAC+AGG - chr5_2:25182743-25182762 Msa0764770:intron 35.0%
!! ATTCCATAGTTCCACTTTTG+AGG + chr5_2:25182800-25182819 None:intergenic 35.0%
! GTAGTGGTGTTAATTCCATT+AGG + chr5_2:25182941-25182960 None:intergenic 35.0%
TGTGAAGAAACAATCTGTAG+TGG + chr5_2:25182957-25182976 None:intergenic 35.0%
!! ATTATTATCGGTGTTGTGTC+AGG - chr5_2:25183184-25183203 Msa0764770:CDS 35.0%
! GGATGATATATGCTTTTGCA+TGG - chr5_2:25183299-25183318 Msa0764770:CDS 35.0%
! CTTTTGCATGGTCTTTGATT+AGG - chr5_2:25183311-25183330 Msa0764770:CDS 35.0%
AATCAAGCTTATGATCACCT+AGG - chr5_2:25183361-25183380 Msa0764770:CDS 35.0%
ATGATCACCTAGGATTGTAA+AGG - chr5_2:25183371-25183390 Msa0764770:CDS 35.0%
GTGAAAACCTTTACAATCCT+AGG + chr5_2:25183381-25183400 None:intergenic 35.0%
GTTATATGTGGTTGGAAGCT+AGG + chr5_2:25182317-25182336 None:intergenic 40.0%
! TGTTGGCTGCAAGTTATATG+TGG + chr5_2:25182329-25182348 None:intergenic 40.0%
GTCAATTGAGGTAATAGGGT+AGG + chr5_2:25182381-25182400 None:intergenic 40.0%
CAAGAACATGTTGACATGGT+GGG + chr5_2:25182434-25182453 None:intergenic 40.0%
ACAAGAACATGTTGACATGG+TGG + chr5_2:25182435-25182454 None:intergenic 40.0%
TCTTGTACTCTACCTAGCAA+AGG - chr5_2:25182449-25182468 Msa0764770:CDS 40.0%
AAAGCTGGACCAAGATTAAC+CGG + chr5_2:25182704-25182723 None:intergenic 40.0%
! TCTTGGTCCAGCTTTTGATA+TGG - chr5_2:25182709-25182728 Msa0764770:intron 40.0%
GATCCTCAAAAGTGGAACTA+TGG - chr5_2:25182794-25182813 Msa0764770:CDS 40.0%
!!! GAAAGGAGCTTTGGATTTTG+TGG - chr5_2:25182878-25182897 Msa0764770:CDS 40.0%
!! TTCTGGCCTTTCTGTTTTCA+GGG - chr5_2:25183269-25183288 Msa0764770:CDS 40.0%
AGCAAACCCTGAAAACAGAA+AGG + chr5_2:25183278-25183297 None:intergenic 40.0%
!! TTCTGTTTTCAGGGTTTGCT+TGG - chr5_2:25183278-25183297 Msa0764770:CDS 40.0%
! GTGCACACATTTTCCACAAT+AGG + chr5_2:25183494-25183513 None:intergenic 40.0%
!! GAATTTGGAATGGACTGACT+AGG - chr5_2:25183605-25183624 Msa0764770:exon 40.0%
GTTATATGTGGTTGGAAGCT+AGG + chr5_2:25182317-25182336 None:intergenic 40.0%
! TGTTGGCTGCAAGTTATATG+TGG + chr5_2:25182329-25182348 None:intergenic 40.0%
GTCAATTGAGGTAATAGGGT+AGG + chr5_2:25182381-25182400 None:intergenic 40.0%
CAAGAACATGTTGACATGGT+GGG + chr5_2:25182434-25182453 None:intergenic 40.0%
ACAAGAACATGTTGACATGG+TGG + chr5_2:25182435-25182454 None:intergenic 40.0%
TCTTGTACTCTACCTAGCAA+AGG - chr5_2:25182449-25182468 Msa0764770:CDS 40.0%
AAAGCTGGACCAAGATTAAC+CGG + chr5_2:25182704-25182723 None:intergenic 40.0%
! TCTTGGTCCAGCTTTTGATA+TGG - chr5_2:25182709-25182728 Msa0764770:intron 40.0%
GATCCTCAAAAGTGGAACTA+TGG - chr5_2:25182794-25182813 Msa0764770:CDS 40.0%
!!! GAAAGGAGCTTTGGATTTTG+TGG - chr5_2:25182878-25182897 Msa0764770:CDS 40.0%
!! TTCTGGCCTTTCTGTTTTCA+GGG - chr5_2:25183269-25183288 Msa0764770:CDS 40.0%
AGCAAACCCTGAAAACAGAA+AGG + chr5_2:25183278-25183297 None:intergenic 40.0%
!! TTCTGTTTTCAGGGTTTGCT+TGG - chr5_2:25183278-25183297 Msa0764770:CDS 40.0%
! GTGCACACATTTTCCACAAT+AGG + chr5_2:25183494-25183513 None:intergenic 40.0%
!! GAATTTGGAATGGACTGACT+AGG - chr5_2:25183605-25183624 Msa0764770:exon 40.0%
TGTGAATGAGAGAATGAGGG+AGG + chr5_2:25182148-25182167 None:intergenic 45.0%
TGGTGAGAAGAGGAAGTGAA+GGG + chr5_2:25182187-25182206 None:intergenic 45.0%
ATGGTGAGAAGAGGAAGTGA+AGG + chr5_2:25182188-25182207 None:intergenic 45.0%
GAACCTCTCAAGTACCCTTT+CGG - chr5_2:25182269-25182288 Msa0764770:three_prime_UTR 45.0%
GGCTGCAAGTTATATGTGGT+TGG + chr5_2:25182325-25182344 None:intergenic 45.0%
ACTCTACCTAGCAAAGGCTT+TGG - chr5_2:25182455-25182474 Msa0764770:CDS 45.0%
TCTAAGCCAAAGCCTTTGCT+AGG + chr5_2:25182464-25182483 None:intergenic 45.0%
! GCAAAGGCTTTGGCTTAGAT+TGG - chr5_2:25182465-25182484 Msa0764770:CDS 45.0%
CACAACATGTCGAAATCGGA+AGG + chr5_2:25182673-25182692 None:intergenic 45.0%
!! GTTCTGGCCTTTCTGTTTTC+AGG - chr5_2:25183268-25183287 Msa0764770:CDS 45.0%
!! TTTGGAATGGACTGACTAGG+TGG - chr5_2:25183608-25183627 Msa0764770:exon 45.0%
TGTGAATGAGAGAATGAGGG+AGG + chr5_2:25182148-25182167 None:intergenic 45.0%
TGGTGAGAAGAGGAAGTGAA+GGG + chr5_2:25182187-25182206 None:intergenic 45.0%
ATGGTGAGAAGAGGAAGTGA+AGG + chr5_2:25182188-25182207 None:intergenic 45.0%
GAACCTCTCAAGTACCCTTT+CGG - chr5_2:25182269-25182288 Msa0764770:three_prime_UTR 45.0%
GGCTGCAAGTTATATGTGGT+TGG + chr5_2:25182325-25182344 None:intergenic 45.0%
ACTCTACCTAGCAAAGGCTT+TGG - chr5_2:25182455-25182474 Msa0764770:CDS 45.0%
TCTAAGCCAAAGCCTTTGCT+AGG + chr5_2:25182464-25182483 None:intergenic 45.0%
! GCAAAGGCTTTGGCTTAGAT+TGG - chr5_2:25182465-25182484 Msa0764770:CDS 45.0%
CACAACATGTCGAAATCGGA+AGG + chr5_2:25182673-25182692 None:intergenic 45.0%
!! GTTCTGGCCTTTCTGTTTTC+AGG - chr5_2:25183268-25183287 Msa0764770:CDS 45.0%
!! TTTGGAATGGACTGACTAGG+TGG - chr5_2:25183608-25183627 Msa0764770:exon 45.0%
ATGAGGGAGGACAGGGAATA+AGG + chr5_2:25182135-25182154 None:intergenic 50.0%
TGAGAGAATGAGGGAGGACA+GGG + chr5_2:25182142-25182161 None:intergenic 50.0%
ATGAGAGAATGAGGGAGGAC+AGG + chr5_2:25182143-25182162 None:intergenic 50.0%
!! CTACCGAAAGGGTACTTGAG+AGG + chr5_2:25182275-25182294 None:intergenic 50.0%
CTCAAGTACCCTTTCGGTAG+CGG - chr5_2:25182275-25182294 Msa0764770:three_prime_UTR 50.0%
CTCACCTTCACAACACACAC+AGG - chr5_2:25182353-25182372 Msa0764770:three_prime_UTR 50.0%
TCACATGCAGCACAAGAGCT+AGG + chr5_2:25182860-25182879 None:intergenic 50.0%
GCTCTTGTGCTGCATGTGAA+AGG - chr5_2:25182861-25182880 Msa0764770:CDS 50.0%
GCTGCATGTGAAAGGAGCTT+TGG - chr5_2:25182869-25182888 Msa0764770:CDS 50.0%
ATGAGGGAGGACAGGGAATA+AGG + chr5_2:25182135-25182154 None:intergenic 50.0%
TGAGAGAATGAGGGAGGACA+GGG + chr5_2:25182142-25182161 None:intergenic 50.0%
ATGAGAGAATGAGGGAGGAC+AGG + chr5_2:25182143-25182162 None:intergenic 50.0%
!! CTACCGAAAGGGTACTTGAG+AGG + chr5_2:25182275-25182294 None:intergenic 50.0%
CTCAAGTACCCTTTCGGTAG+CGG - chr5_2:25182275-25182294 Msa0764770:three_prime_UTR 50.0%
CTCACCTTCACAACACACAC+AGG - chr5_2:25182353-25182372 Msa0764770:three_prime_UTR 50.0%
TCACATGCAGCACAAGAGCT+AGG + chr5_2:25182860-25182879 None:intergenic 50.0%
GCTCTTGTGCTGCATGTGAA+AGG - chr5_2:25182861-25182880 Msa0764770:CDS 50.0%
GCTGCATGTGAAAGGAGCTT+TGG - chr5_2:25182869-25182888 Msa0764770:CDS 50.0%
GGAGCCTGTGTGTGTTGTGA+AGG + chr5_2:25182360-25182379 None:intergenic 55.0%
GGAGCCTGTGTGTGTTGTGA+AGG + chr5_2:25182360-25182379 None:intergenic 55.0%
! TACCCTTTCGGTAGCGGCCC+CGG - chr5_2:25182281-25182300 Msa0764770:three_prime_UTR 65.0%
AACCGGGGCCGCTACCGAAA+GGG + chr5_2:25182286-25182305 None:intergenic 65.0%
AAGCTAGGGTCGCCGCAACC+GGG + chr5_2:25182302-25182321 None:intergenic 65.0%
GAAGCTAGGGTCGCCGCAAC+CGG + chr5_2:25182303-25182322 None:intergenic 65.0%
! TACCCTTTCGGTAGCGGCCC+CGG - chr5_2:25182281-25182300 Msa0764770:three_prime_UTR 65.0%
AACCGGGGCCGCTACCGAAA+GGG + chr5_2:25182286-25182305 None:intergenic 65.0%
AAGCTAGGGTCGCCGCAACC+GGG + chr5_2:25182302-25182321 None:intergenic 65.0%
GAAGCTAGGGTCGCCGCAAC+CGG + chr5_2:25182303-25182322 None:intergenic 65.0%
CAACCGGGGCCGCTACCGAA+AGG + chr5_2:25182287-25182306 None:intergenic 70.0%
! TTCGGTAGCGGCCCCGGTTG+CGG - chr5_2:25182287-25182306 Msa0764770:three_prime_UTR 70.0%
AGCTAGGGTCGCCGCAACCG+GGG + chr5_2:25182301-25182320 None:intergenic 70.0%
CAACCGGGGCCGCTACCGAA+AGG + chr5_2:25182287-25182306 None:intergenic 70.0%
! TTCGGTAGCGGCCCCGGTTG+CGG - chr5_2:25182287-25182306 Msa0764770:three_prime_UTR 70.0%
AGCTAGGGTCGCCGCAACCG+GGG + chr5_2:25182301-25182320 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 25182113 25183669 25182113 ID=Msa0764770;Name=Msa0764770
chr5_2 mRNA 25182113 25183669 25182113 ID=Msa0764770-mRNA-1;Parent=Msa0764770;Name=Msa0764770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=57|1|1|1|1|1|2|324|296
chr5_2 exon 25182113 25182492 25182113 ID=Msa0764770-mRNA-1:exon:10136;Parent=Msa0764770-mRNA-1
chr5_2 exon 25182778 25183669 25182778 ID=Msa0764770-mRNA-1:exon:10135;Parent=Msa0764770-mRNA-1
chr5_2 five_prime_UTR 25183613 25183669 25183613 ID=Msa0764770-mRNA-1:five_prime_utr;Parent=Msa0764770-mRNA-1
chr5_2 CDS 25182778 25183612 25182778 ID=Msa0764770-mRNA-1:cds;Parent=Msa0764770-mRNA-1
chr5_2 CDS 25182437 25182492 25182437 ID=Msa0764770-mRNA-1:cds;Parent=Msa0764770-mRNA-1
chr5_2 three_prime_UTR 25182113 25182436 25182113 ID=Msa0764770-mRNA-1:three_prime_utr;Parent=Msa0764770-mRNA-1
Gene Sequence

>Msa0764770

ATGAAGTTTAGTTACCCTTCACTTCCTCTTCTCACCATTTTCCTTTTCCTACTTCCTTCTTTGATCCAATCTCAAATGTGCCAAAGAAATTGTGGCAAAGAACCTCTCAAGTACCCTTTCGGTAGCGGCCCCGGTTGCGGCGACCCTAGCTTCCAACCACATATAACTTGCAGCCAACAAAAACTCACCTTCACAACACACACAGGCTCCTACCCTATTACCTCAATTGACTATGCAAATCAAGTCATATACATTTCAGATCCCACCATGTCAACATGTTCTTGTACTCTACCTAGCAAAGGCTTTGGCTTAGATTGGAACGCGCCTTTTACTTTCGATGATAGCACCATATTCGCTTTAGTAGATTGTTCGATGAACTCATCATCGATATGTAAATCAAGAAGTTATGATGATGGAAGCAATTCCAAGCTTCAATGTGATCAAAATACACAAATTTGTGATGTTATGTATTCTTGTAGGCCTATTAGTACTAATATTAACCTTCCGATTTCGACATGTTGTGTTTATACACCGGTTAATCTTGGTCCAGCTTTTGATATGGATCTTCAAAAGCTTCAATGCAGTTCATATACAGGTTTTTACAATTACAATGATCAACAAATTGATCCTCAAAAGTGGAACTATGGAATTGCACTTAAGTATAAGTTTAGTGTTACAAATGATTATCCTAGCTCTTGTGCTGCATGTGAAAGGAGCTTTGGATTTTGTGGATATAGTGAAGTTTATAATTCATTTTTATGCAACTGTCCTAATGGAATTAACACCACTACAGATTGTTTCTTCACATCATCTTACAATAATGGTTTTAGAAATGGGTTTGCTTGGATGATATATGCTTTTGCATGGTCTTTGATTAGGCTCATCTTATAA

Protein sequence

>Msa0764770

MKFSYPSLPLLTIFLFLLPSLIQSQMCQRNCGKEPLKYPFGSGPGCGDPSFQPHITCSQQKLTFTTHTGSYPITSIDYANQVIYISDPTMSTCSCTLPSKGFGLDWNAPFTFDDSTIFALVDCSMNSSSICKSRSYDDGSNSKLQCDQNTQICDVMYSCRPISTNINLPISTCCVYTPVNLGPAFDMDLQKLQCSSYTGFYNYNDQQIDPQKWNYGIALKYKFSVTNDYPSSCAACERSFGFCGYSEVYNSFLCNCPNGINTTTDCFFTSSYNNGFRNGFAWMIYAFAWSLIRLIL*