Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054330 | sp|Q9SAH7|WRK40_ARATH | 41.434 | 251 | 115 | 7 | 1 | 229 | 54 | 294 | 9.50e-55 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054330 | G7I7M7 | 96.250 | 240 | 8 | 1 | 1 | 239 | 46 | 285 | 2.42e-172 | 485 |
Gene ID | Type | Classification |
---|---|---|
Msa0054330 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0054240 | Msa0054330 | 0.995286 | 8.932419e-215 | -8.615850e-47 |
Msa0054250 | Msa0054330 | 0.864363 | 1.283030e-64 | -8.615850e-47 |
Msa0054260 | Msa0054330 | 0.800533 | 1.378164e-48 | -8.615850e-47 |
Msa0054310 | Msa0054330 | 0.822133 | 2.788857e-53 | -8.615850e-47 |
Msa0054320 | Msa0054330 | 0.853165 | 2.861825e-61 | -8.615850e-47 |
Msa0054330 | Msa0055710 | 0.815731 | 7.956533e-52 | -8.615850e-47 |
Msa0054330 | Msa0100070 | 0.981403 | 1.668062e-152 | -8.615850e-47 |
Msa0054330 | Msa0100080 | 0.827472 | 1.534968e-54 | -8.615850e-47 |
Msa0054330 | Msa0141230 | 0.831371 | 1.734108e-55 | -8.615850e-47 |
Msa0054330 | Msa0148720 | 0.827568 | 1.455815e-54 | -8.615850e-47 |
Msa0054330 | Msa0377800 | 0.800683 | 1.284606e-48 | -8.615850e-47 |
Msa0054330 | Msa0506300 | 0.809540 | 1.798705e-50 | -8.615850e-47 |
Msa0054330 | Msa0559250 | 0.816698 | 4.834915e-52 | -8.615850e-47 |
Msa0054330 | Msa0568440 | 0.802315 | 5.945960e-49 | -8.615850e-47 |
Msa0054330 | Msa0607180 | 0.806938 | 6.451458e-50 | -8.615850e-47 |
Msa0054330 | Msa0647360 | 0.819156 | 1.346209e-52 | -8.615850e-47 |
Msa0054330 | Msa0696740 | 0.828179 | 1.038213e-54 | -8.615850e-47 |
Msa0054330 | Msa0696770 | 0.827535 | 1.482668e-54 | -8.615850e-47 |
Msa0054330 | Msa1026500 | 0.843993 | 9.956024e-59 | -8.615850e-47 |
Msa0054330 | Msa1026510 | 0.858143 | 1.008648e-62 | -8.615850e-47 |
Msa0054330 | Msa1074570 | 0.829469 | 5.059101e-55 | -8.615850e-47 |
Msa0054330 | Msa1074580 | 0.862533 | 4.736801e-64 | -8.615850e-47 |
Msa0054330 | Msa1107800 | 0.812678 | 3.756501e-51 | -8.615850e-47 |
Msa0054330 | Msa1111750 | 0.848254 | 6.892300e-60 | -8.615850e-47 |
Msa0054330 | Msa1111760 | 0.844064 | 9.527692e-59 | -8.615850e-47 |
Msa0054330 | Msa1154070 | 0.838876 | 2.216144e-57 | -8.615850e-47 |
Msa0054330 | Msa1154080 | 0.860205 | 2.429042e-63 | -8.615850e-47 |
Msa0054330 | Msa1177070 | 0.804237 | 2.378943e-49 | -8.615850e-47 |
Msa0054330 | Msa1381940 | 0.826809 | 2.212475e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054330 | MtrunA17_Chr1g0150281 | 96.250 | 240 | 8 | 1 | 1 | 239 | 46 | 285 | 4.67e-176 | 485 |
Msa0054330 | MtrunA17_Chr3g0136961 | 57.959 | 245 | 79 | 8 | 1 | 230 | 51 | 286 | 2.50e-81 | 245 |
Msa0054330 | MtrunA17_Chr2g0333851 | 45.382 | 249 | 102 | 5 | 1 | 230 | 80 | 313 | 3.64e-58 | 187 |
Msa0054330 | MtrunA17_Chr4g0001361 | 49.419 | 172 | 69 | 4 | 76 | 230 | 144 | 314 | 1.83e-45 | 154 |
Msa0054330 | MtrunA17_Chr1g0150271 | 38.306 | 248 | 122 | 6 | 1 | 231 | 5 | 238 | 1.99e-42 | 144 |
Msa0054330 | MtrunA17_Chr7g0270831 | 31.336 | 217 | 97 | 4 | 63 | 229 | 187 | 401 | 4.72e-26 | 105 |
Msa0054330 | MtrunA17_Chr3g0099641 | 33.010 | 206 | 80 | 5 | 79 | 226 | 236 | 441 | 8.10e-25 | 102 |
Msa0054330 | MtrunA17_Chr4g0051181 | 52.564 | 78 | 37 | 0 | 74 | 151 | 223 | 300 | 5.31e-24 | 99.8 |
Msa0054330 | MtrunA17_Chr4g0060271 | 56.000 | 75 | 33 | 0 | 77 | 151 | 238 | 312 | 9.48e-24 | 99.4 |
Msa0054330 | MtrunA17_Chr2g0288871 | 57.534 | 73 | 31 | 0 | 79 | 151 | 290 | 362 | 1.74e-23 | 98.6 |
Msa0054330 | MtrunA17_Chr2g0322391 | 48.889 | 90 | 46 | 0 | 79 | 168 | 334 | 423 | 1.94e-23 | 98.6 |
Msa0054330 | MtrunA17_Chr7g0216891 | 53.333 | 75 | 35 | 0 | 77 | 151 | 202 | 276 | 2.36e-23 | 98.2 |
Msa0054330 | MtrunA17_Chr2g0302391 | 41.739 | 115 | 56 | 3 | 46 | 151 | 156 | 268 | 6.74e-23 | 96.3 |
Msa0054330 | MtrunA17_Chr4g0075201 | 50.000 | 82 | 41 | 0 | 79 | 160 | 252 | 333 | 3.50e-22 | 94.7 |
Msa0054330 | MtrunA17_Chr4g0025061 | 36.184 | 152 | 82 | 4 | 20 | 170 | 299 | 436 | 9.90e-21 | 90.5 |
Msa0054330 | MtrunA17_Chr4g0025051 | 48.148 | 81 | 42 | 0 | 71 | 151 | 312 | 392 | 1.30e-20 | 90.1 |
Msa0054330 | MtrunA17_Chr3g0101131 | 39.286 | 112 | 59 | 4 | 46 | 151 | 363 | 471 | 1.12e-19 | 87.4 |
Msa0054330 | MtrunA17_Chr7g0270191 | 49.351 | 77 | 36 | 2 | 75 | 151 | 128 | 201 | 1.43e-19 | 85.5 |
Msa0054330 | MtrunA17_Chr5g0445311 | 57.895 | 57 | 23 | 1 | 95 | 151 | 365 | 420 | 1.59e-19 | 87.0 |
Msa0054330 | MtrunA17_Chr5g0445311 | 34.862 | 109 | 62 | 3 | 50 | 151 | 149 | 255 | 5.51e-11 | 62.0 |
Msa0054330 | MtrunA17_Chr1g0194481 | 48.649 | 74 | 33 | 2 | 78 | 151 | 146 | 214 | 1.82e-19 | 85.5 |
Msa0054330 | MtrunA17_Chr5g0447701 | 52.703 | 74 | 32 | 2 | 79 | 152 | 239 | 309 | 1.92e-19 | 86.3 |
Msa0054330 | MtrunA17_Chr5g0401821 | 54.386 | 57 | 26 | 0 | 95 | 151 | 200 | 256 | 1.94e-19 | 84.7 |
Msa0054330 | MtrunA17_Chr5g0443131 | 47.297 | 74 | 34 | 2 | 78 | 151 | 145 | 213 | 3.61e-19 | 84.3 |
Msa0054330 | MtrunA17_Chr5g0418781 | 42.308 | 104 | 48 | 4 | 54 | 151 | 83 | 180 | 3.65e-19 | 84.0 |
Msa0054330 | MtrunA17_Chr4g0053281 | 50.769 | 65 | 32 | 0 | 95 | 159 | 267 | 331 | 3.76e-19 | 84.7 |
Msa0054330 | MtrunA17_Chr4g0051881 | 57.895 | 57 | 23 | 1 | 95 | 151 | 179 | 234 | 4.23e-19 | 84.7 |
Msa0054330 | MtrunA17_Chr1g0184691 | 49.315 | 73 | 35 | 1 | 82 | 152 | 279 | 351 | 4.95e-19 | 84.7 |
Msa0054330 | MtrunA17_Chr1g0147881 | 36.538 | 104 | 55 | 1 | 48 | 151 | 227 | 319 | 1.25e-18 | 83.6 |
Msa0054330 | MtrunA17_Chr5g0432161 | 41.935 | 93 | 47 | 4 | 60 | 151 | 391 | 477 | 2.19e-18 | 83.6 |
Msa0054330 | MtrunA17_Chr5g0432161 | 50.877 | 57 | 26 | 2 | 95 | 151 | 245 | 299 | 1.15e-13 | 69.7 |
Msa0054330 | MtrunA17_Chr7g0263531 | 50.746 | 67 | 32 | 1 | 85 | 151 | 352 | 417 | 2.94e-18 | 83.2 |
Msa0054330 | MtrunA17_Chr7g0263531 | 58.621 | 58 | 22 | 2 | 95 | 152 | 190 | 245 | 1.55e-16 | 78.2 |
Msa0054330 | MtrunA17_Chr2g0294231 | 47.297 | 74 | 34 | 2 | 78 | 151 | 191 | 259 | 3.36e-18 | 82.4 |
Msa0054330 | MtrunA17_Chr5g0418191 | 45.122 | 82 | 39 | 3 | 70 | 151 | 301 | 376 | 3.54e-18 | 82.8 |
Msa0054330 | MtrunA17_Chr5g0418191 | 54.386 | 57 | 24 | 2 | 95 | 151 | 152 | 206 | 3.56e-14 | 71.2 |
Msa0054330 | MtrunA17_Chr4g0042831 | 46.341 | 82 | 38 | 3 | 70 | 151 | 259 | 334 | 3.59e-18 | 82.4 |
Msa0054330 | MtrunA17_Chr4g0042831 | 47.368 | 57 | 29 | 1 | 95 | 151 | 146 | 201 | 6.69e-11 | 61.6 |
Msa0054330 | MtrunA17_Chr7g0218081 | 34.677 | 124 | 75 | 3 | 28 | 151 | 349 | 466 | 5.85e-18 | 82.4 |
Msa0054330 | MtrunA17_Chr7g0218081 | 49.123 | 57 | 27 | 2 | 95 | 151 | 229 | 283 | 1.85e-11 | 63.2 |
Msa0054330 | MtrunA17_Chr7g0228941 | 52.632 | 57 | 27 | 0 | 95 | 151 | 53 | 109 | 6.22e-18 | 77.0 |
Msa0054330 | MtrunA17_Chr1g0188941 | 50.877 | 57 | 27 | 1 | 95 | 151 | 52 | 107 | 1.13e-17 | 76.3 |
Msa0054330 | MtrunA17_Chr7g0238921 | 49.333 | 75 | 37 | 1 | 95 | 169 | 125 | 198 | 3.53e-17 | 79.0 |
Msa0054330 | MtrunA17_Chr3g0106491 | 46.575 | 73 | 36 | 2 | 79 | 151 | 352 | 421 | 3.53e-17 | 80.1 |
Msa0054330 | MtrunA17_Chr3g0106491 | 52.632 | 57 | 25 | 2 | 95 | 151 | 199 | 253 | 7.67e-14 | 70.5 |
Msa0054330 | MtrunA17_Chr8g0379461 | 51.724 | 58 | 28 | 0 | 95 | 152 | 77 | 134 | 6.59e-17 | 77.4 |
Msa0054330 | MtrunA17_Chr4g0004911 | 41.304 | 92 | 48 | 3 | 60 | 151 | 307 | 392 | 8.61e-17 | 79.0 |
Msa0054330 | MtrunA17_Chr4g0004911 | 49.123 | 57 | 28 | 1 | 95 | 151 | 185 | 240 | 1.59e-13 | 69.3 |
Msa0054330 | MtrunA17_Chr1g0150801 | 50.877 | 57 | 27 | 1 | 95 | 151 | 103 | 158 | 9.32e-17 | 75.1 |
Msa0054330 | MtrunA17_Chr7g0249301 | 42.857 | 84 | 42 | 3 | 68 | 151 | 271 | 348 | 1.14e-16 | 78.2 |
Msa0054330 | MtrunA17_Chr3g0139021 | 52.632 | 57 | 27 | 0 | 95 | 151 | 315 | 371 | 1.81e-16 | 77.8 |
Msa0054330 | MtrunA17_Chr3g0079691 | 34.921 | 126 | 70 | 4 | 79 | 195 | 482 | 604 | 1.96e-16 | 78.2 |
Msa0054330 | MtrunA17_Chr3g0079691 | 50.877 | 57 | 26 | 2 | 95 | 151 | 281 | 335 | 4.87e-12 | 65.1 |
Msa0054330 | MtrunA17_Chr2g0284321 | 49.123 | 57 | 29 | 0 | 95 | 151 | 36 | 92 | 2.09e-16 | 75.5 |
Msa0054330 | MtrunA17_Chr4g0071521 | 50.000 | 58 | 29 | 0 | 95 | 152 | 246 | 303 | 2.18e-16 | 77.0 |
Msa0054330 | MtrunA17_Chr7g0224801 | 51.613 | 62 | 29 | 1 | 95 | 156 | 94 | 154 | 3.09e-16 | 73.9 |
Msa0054330 | MtrunA17_Chr3g0129361 | 52.632 | 57 | 26 | 1 | 95 | 151 | 145 | 200 | 3.96e-16 | 74.7 |
Msa0054330 | MtrunA17_Chr8g0383351 | 52.632 | 57 | 26 | 1 | 95 | 151 | 161 | 216 | 4.01e-16 | 75.1 |
Msa0054330 | MtrunA17_Chr7g0243891 | 45.205 | 73 | 37 | 2 | 79 | 151 | 361 | 430 | 5.83e-16 | 76.6 |
Msa0054330 | MtrunA17_Chr7g0243891 | 49.123 | 57 | 27 | 2 | 95 | 151 | 217 | 271 | 1.32e-11 | 63.9 |
Msa0054330 | MtrunA17_Chr7g0249311 | 32.911 | 158 | 88 | 7 | 68 | 217 | 371 | 518 | 6.36e-16 | 76.6 |
Msa0054330 | MtrunA17_Chr7g0249311 | 49.123 | 57 | 27 | 2 | 95 | 151 | 180 | 234 | 9.97e-11 | 61.2 |
Msa0054330 | MtrunA17_Chr2g0289181 | 33.607 | 122 | 74 | 3 | 95 | 209 | 15 | 136 | 7.63e-16 | 74.3 |
Msa0054330 | MtrunA17_Chr4g0068541 | 45.205 | 73 | 37 | 2 | 79 | 151 | 195 | 264 | 9.96e-16 | 75.9 |
Msa0054330 | MtrunA17_Chr8g0335811 | 52.632 | 57 | 26 | 1 | 95 | 151 | 155 | 210 | 1.11e-15 | 73.6 |
Msa0054330 | MtrunA17_Chr2g0319961 | 52.632 | 57 | 27 | 0 | 95 | 151 | 81 | 137 | 1.59e-15 | 73.6 |
Msa0054330 | MtrunA17_Chr4g0074001 | 49.123 | 57 | 28 | 1 | 95 | 151 | 360 | 415 | 1.06e-14 | 72.8 |
Msa0054330 | MtrunA17_Chr2g0293481 | 50.877 | 57 | 28 | 0 | 95 | 151 | 268 | 324 | 1.09e-14 | 72.8 |
Msa0054330 | MtrunA17_Chr8g0386241 | 45.161 | 62 | 33 | 1 | 95 | 156 | 104 | 164 | 1.17e-14 | 69.7 |
Msa0054330 | MtrunA17_Chr8g0387501 | 47.458 | 59 | 31 | 0 | 93 | 151 | 128 | 186 | 1.79e-14 | 70.9 |
Msa0054330 | MtrunA17_Chr3g0129321 | 49.123 | 57 | 28 | 1 | 95 | 151 | 119 | 174 | 1.97e-14 | 69.7 |
Msa0054330 | MtrunA17_Chr8g0383251 | 31.343 | 134 | 77 | 5 | 21 | 151 | 43 | 164 | 3.46e-14 | 68.6 |
Msa0054330 | MtrunA17_Chr4g0024391 | 35.870 | 92 | 59 | 0 | 79 | 170 | 214 | 305 | 4.44e-14 | 70.9 |
Msa0054330 | MtrunA17_Chr8g0348311 | 45.614 | 57 | 31 | 0 | 95 | 151 | 156 | 212 | 5.34e-14 | 70.1 |
Msa0054330 | MtrunA17_Chr7g0248721 | 52.459 | 61 | 27 | 2 | 95 | 155 | 142 | 200 | 8.04e-14 | 68.2 |
Msa0054330 | MtrunA17_Chr6g0485431 | 39.773 | 88 | 47 | 4 | 66 | 152 | 130 | 212 | 8.69e-14 | 69.7 |
Msa0054330 | MtrunA17_Chr7g0270051 | 47.368 | 57 | 30 | 0 | 95 | 151 | 54 | 110 | 9.83e-14 | 68.9 |
Msa0054330 | MtrunA17_Chr7g0248691 | 47.368 | 57 | 30 | 0 | 95 | 151 | 155 | 211 | 1.12e-13 | 69.3 |
Msa0054330 | MtrunA17_Chr1g0202461 | 36.842 | 76 | 48 | 0 | 95 | 170 | 262 | 337 | 4.58e-13 | 67.8 |
Msa0054330 | MtrunA17_Chr1g0189391 | 41.333 | 75 | 40 | 3 | 79 | 152 | 84 | 155 | 5.12e-13 | 67.4 |
Msa0054330 | MtrunA17_Chr5g0447711 | 46.479 | 71 | 36 | 2 | 81 | 151 | 218 | 286 | 4.52e-12 | 64.7 |
Msa0054330 | MtrunA17_Chr8g0387981 | 50.877 | 57 | 26 | 1 | 95 | 149 | 133 | 189 | 4.83e-12 | 64.7 |
Msa0054330 | MtrunA17_Chr3g0126391 | 50.877 | 57 | 26 | 1 | 95 | 149 | 134 | 190 | 7.19e-12 | 63.9 |
Msa0054330 | MtrunA17_Chr7g0275531 | 41.975 | 81 | 43 | 2 | 79 | 157 | 105 | 183 | 2.82e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054330 | AT1G80840.1 | 41.434 | 251 | 115 | 7 | 1 | 229 | 54 | 294 | 9.66e-56 | 180 |
Msa0054330 | AT4G31800.2 | 54.706 | 170 | 67 | 4 | 66 | 233 | 82 | 243 | 1.59e-53 | 173 |
Msa0054330 | AT4G31800.1 | 54.706 | 170 | 67 | 4 | 66 | 233 | 147 | 308 | 4.31e-53 | 174 |
Msa0054330 | AT2G25000.2 | 51.786 | 168 | 63 | 3 | 68 | 233 | 75 | 226 | 1.26e-52 | 170 |
Msa0054330 | AT2G25000.4 | 51.786 | 168 | 63 | 3 | 68 | 233 | 75 | 226 | 1.26e-52 | 170 |
Msa0054330 | AT2G25000.3 | 51.786 | 168 | 63 | 3 | 68 | 233 | 97 | 248 | 6.98e-52 | 169 |
Msa0054330 | AT2G25000.1 | 51.786 | 168 | 63 | 3 | 68 | 233 | 118 | 269 | 7.45e-52 | 169 |
Msa0054330 | AT4G31800.3 | 71.642 | 67 | 18 | 1 | 66 | 131 | 147 | 213 | 6.08e-26 | 101 |
Msa0054330 | AT4G04450.2 | 48.913 | 92 | 47 | 0 | 79 | 170 | 183 | 274 | 1.88e-24 | 100 |
Msa0054330 | AT4G04450.1 | 48.913 | 92 | 47 | 0 | 79 | 170 | 277 | 368 | 4.65e-24 | 100 |
Msa0054330 | AT1G68150.1 | 49.485 | 97 | 48 | 1 | 70 | 165 | 210 | 306 | 5.80e-24 | 99.0 |
Msa0054330 | AT4G22070.4 | 54.795 | 73 | 33 | 0 | 79 | 151 | 282 | 354 | 4.34e-23 | 97.8 |
Msa0054330 | AT4G22070.3 | 54.795 | 73 | 33 | 0 | 79 | 151 | 282 | 354 | 4.34e-23 | 97.8 |
Msa0054330 | AT4G22070.2 | 54.795 | 73 | 33 | 0 | 79 | 151 | 282 | 354 | 4.34e-23 | 97.8 |
Msa0054330 | AT4G22070.1 | 54.795 | 73 | 33 | 0 | 79 | 151 | 282 | 354 | 4.34e-23 | 97.8 |
Msa0054330 | AT1G62300.1 | 54.795 | 73 | 33 | 0 | 79 | 151 | 297 | 369 | 7.85e-23 | 97.1 |
Msa0054330 | AT4G01720.1 | 57.534 | 73 | 31 | 0 | 79 | 151 | 224 | 296 | 8.39e-23 | 96.7 |
Msa0054330 | AT5G15130.2 | 52.703 | 74 | 35 | 0 | 95 | 168 | 186 | 259 | 3.06e-22 | 95.1 |
Msa0054330 | AT5G15130.1 | 52.703 | 74 | 35 | 0 | 95 | 168 | 228 | 301 | 4.34e-22 | 94.7 |
Msa0054330 | AT1G18860.1 | 64.912 | 57 | 20 | 0 | 95 | 151 | 240 | 296 | 1.46e-21 | 93.2 |
Msa0054330 | AT4G18170.1 | 53.333 | 60 | 27 | 1 | 92 | 151 | 170 | 228 | 3.41e-19 | 85.1 |
Msa0054330 | AT1G29860.1 | 53.333 | 60 | 27 | 1 | 92 | 151 | 134 | 192 | 3.97e-19 | 84.3 |
Msa0054330 | AT1G64000.1 | 57.377 | 61 | 25 | 1 | 95 | 155 | 115 | 174 | 4.37e-19 | 82.4 |
Msa0054330 | AT5G07100.2 | 38.614 | 101 | 58 | 3 | 51 | 151 | 101 | 197 | 9.55e-19 | 82.0 |
Msa0054330 | AT5G07100.2 | 46.479 | 71 | 37 | 1 | 81 | 151 | 11 | 80 | 3.08e-14 | 69.7 |
Msa0054330 | AT5G07100.4 | 38.614 | 101 | 58 | 3 | 51 | 151 | 101 | 197 | 9.55e-19 | 82.0 |
Msa0054330 | AT5G07100.4 | 46.479 | 71 | 37 | 1 | 81 | 151 | 11 | 80 | 3.08e-14 | 69.7 |
Msa0054330 | AT5G07100.5 | 38.614 | 101 | 58 | 3 | 51 | 151 | 101 | 197 | 9.55e-19 | 82.0 |
Msa0054330 | AT5G07100.5 | 46.479 | 71 | 37 | 1 | 81 | 151 | 11 | 80 | 3.08e-14 | 69.7 |
Msa0054330 | AT5G07100.3 | 38.614 | 101 | 58 | 3 | 51 | 151 | 101 | 197 | 9.55e-19 | 82.0 |
Msa0054330 | AT5G07100.3 | 46.479 | 71 | 37 | 1 | 81 | 151 | 11 | 80 | 3.08e-14 | 69.7 |
Msa0054330 | AT2G47260.1 | 55.000 | 60 | 26 | 1 | 92 | 151 | 172 | 230 | 9.91e-19 | 84.0 |
Msa0054330 | AT5G26170.1 | 50.877 | 57 | 27 | 1 | 95 | 151 | 114 | 169 | 1.18e-18 | 80.9 |
Msa0054330 | AT2G04880.2 | 57.627 | 59 | 24 | 1 | 93 | 151 | 282 | 339 | 1.19e-18 | 84.7 |
Msa0054330 | AT2G04880.1 | 57.627 | 59 | 24 | 1 | 93 | 151 | 306 | 363 | 1.33e-18 | 84.7 |
Msa0054330 | AT5G41570.1 | 57.377 | 61 | 25 | 1 | 95 | 155 | 99 | 158 | 1.72e-18 | 80.5 |
Msa0054330 | AT4G26640.5 | 49.315 | 73 | 34 | 2 | 79 | 151 | 192 | 261 | 1.89e-18 | 83.6 |
Msa0054330 | AT4G26640.6 | 49.315 | 73 | 34 | 2 | 79 | 151 | 192 | 261 | 1.89e-18 | 83.6 |
Msa0054330 | AT4G26640.4 | 49.315 | 73 | 34 | 2 | 79 | 151 | 192 | 261 | 1.89e-18 | 83.6 |
Msa0054330 | AT4G26640.3 | 49.315 | 73 | 34 | 2 | 79 | 151 | 192 | 261 | 1.89e-18 | 83.6 |
Msa0054330 | AT1G13960.2 | 45.122 | 82 | 39 | 3 | 70 | 151 | 237 | 312 | 2.61e-18 | 83.2 |
Msa0054330 | AT1G13960.2 | 52.632 | 57 | 25 | 2 | 95 | 151 | 77 | 131 | 4.40e-13 | 68.2 |
Msa0054330 | AT4G26640.1 | 49.315 | 73 | 34 | 2 | 79 | 151 | 296 | 365 | 2.85e-18 | 83.6 |
Msa0054330 | AT4G26640.7 | 49.315 | 73 | 34 | 2 | 79 | 151 | 328 | 397 | 3.10e-18 | 83.6 |
Msa0054330 | AT4G26640.2 | 49.315 | 73 | 34 | 2 | 79 | 151 | 368 | 437 | 3.19e-18 | 83.6 |
Msa0054330 | AT5G07100.1 | 38.614 | 101 | 58 | 3 | 51 | 151 | 194 | 290 | 4.14e-18 | 82.0 |
Msa0054330 | AT5G07100.1 | 46.479 | 71 | 37 | 1 | 81 | 151 | 104 | 173 | 1.02e-13 | 69.7 |
Msa0054330 | AT5G46350.1 | 47.222 | 72 | 33 | 2 | 80 | 151 | 173 | 239 | 4.38e-18 | 82.0 |
Msa0054330 | AT2G03340.1 | 45.122 | 82 | 39 | 3 | 70 | 151 | 396 | 471 | 4.87e-18 | 83.2 |
Msa0054330 | AT2G03340.1 | 52.632 | 57 | 25 | 2 | 95 | 151 | 251 | 305 | 8.98e-14 | 70.5 |
Msa0054330 | AT1G13960.1 | 45.122 | 82 | 39 | 3 | 70 | 151 | 390 | 465 | 5.21e-18 | 82.8 |
Msa0054330 | AT1G13960.1 | 52.632 | 57 | 25 | 2 | 95 | 151 | 230 | 284 | 5.16e-13 | 68.2 |
Msa0054330 | AT4G31550.1 | 52.632 | 57 | 27 | 0 | 95 | 151 | 247 | 303 | 5.62e-18 | 81.6 |
Msa0054330 | AT4G31550.2 | 52.632 | 57 | 27 | 0 | 95 | 151 | 246 | 302 | 5.62e-18 | 81.6 |
Msa0054330 | AT5G49520.1 | 47.222 | 72 | 34 | 2 | 95 | 163 | 222 | 292 | 6.15e-18 | 82.4 |
Msa0054330 | AT2G30590.1 | 54.386 | 57 | 26 | 0 | 95 | 151 | 314 | 370 | 6.46e-18 | 82.0 |
Msa0054330 | AT1G69810.2 | 50.000 | 74 | 36 | 1 | 79 | 151 | 130 | 203 | 2.04e-17 | 80.1 |
Msa0054330 | AT3G62340.1 | 51.562 | 64 | 30 | 1 | 88 | 151 | 112 | 174 | 2.10e-17 | 79.7 |
Msa0054330 | AT1G69310.4 | 52.542 | 59 | 27 | 1 | 93 | 151 | 146 | 203 | 2.58e-17 | 79.3 |
Msa0054330 | AT1G69310.2 | 52.542 | 59 | 27 | 1 | 93 | 151 | 146 | 203 | 2.58e-17 | 79.3 |
Msa0054330 | AT1G69310.1 | 52.542 | 59 | 27 | 1 | 93 | 151 | 146 | 203 | 2.58e-17 | 79.3 |
Msa0054330 | AT1G69810.1 | 50.000 | 74 | 36 | 1 | 79 | 151 | 188 | 261 | 2.74e-17 | 80.5 |
Msa0054330 | AT5G56270.1 | 47.945 | 73 | 35 | 2 | 79 | 151 | 474 | 543 | 2.78e-17 | 80.9 |
Msa0054330 | AT5G56270.1 | 30.137 | 146 | 94 | 4 | 6 | 151 | 191 | 328 | 9.17e-12 | 64.7 |
Msa0054330 | AT2G24570.1 | 52.632 | 57 | 27 | 0 | 95 | 151 | 244 | 300 | 3.54e-17 | 79.3 |
Msa0054330 | AT2G23320.1 | 49.123 | 57 | 29 | 0 | 95 | 151 | 241 | 297 | 3.54e-17 | 79.3 |
Msa0054330 | AT5G13080.1 | 53.226 | 62 | 28 | 1 | 95 | 156 | 68 | 128 | 4.39e-17 | 75.9 |
Msa0054330 | AT3G01080.1 | 43.902 | 82 | 40 | 3 | 70 | 151 | 287 | 362 | 4.67e-17 | 80.1 |
Msa0054330 | AT3G01080.1 | 49.123 | 57 | 27 | 2 | 95 | 151 | 168 | 222 | 8.43e-11 | 61.6 |
Msa0054330 | AT3G01080.2 | 43.902 | 82 | 40 | 3 | 70 | 151 | 325 | 400 | 5.14e-17 | 80.1 |
Msa0054330 | AT3G01080.2 | 49.123 | 57 | 27 | 2 | 95 | 151 | 206 | 260 | 7.69e-11 | 62.0 |
Msa0054330 | AT5G28650.1 | 43.023 | 86 | 41 | 2 | 82 | 165 | 248 | 327 | 5.54e-17 | 79.0 |
Msa0054330 | AT1G29280.1 | 50.877 | 57 | 28 | 0 | 95 | 151 | 75 | 131 | 9.07e-17 | 77.4 |
Msa0054330 | AT4G24240.1 | 48.276 | 58 | 30 | 0 | 95 | 152 | 282 | 339 | 1.01e-16 | 78.6 |
Msa0054330 | AT3G04670.1 | 44.444 | 72 | 38 | 1 | 82 | 151 | 248 | 319 | 1.62e-16 | 77.8 |
Msa0054330 | AT2G38470.1 | 45.205 | 73 | 37 | 2 | 79 | 151 | 349 | 418 | 1.86e-16 | 78.6 |
Msa0054330 | AT2G38470.1 | 52.632 | 57 | 25 | 2 | 95 | 151 | 185 | 239 | 8.30e-14 | 70.5 |
Msa0054330 | AT2G44745.1 | 52.632 | 57 | 26 | 1 | 95 | 151 | 146 | 201 | 7.63e-16 | 74.3 |
Msa0054330 | AT3G01970.1 | 49.180 | 61 | 30 | 1 | 95 | 155 | 66 | 125 | 1.30e-15 | 72.0 |
Msa0054330 | AT2G30250.1 | 45.205 | 73 | 37 | 2 | 79 | 151 | 315 | 384 | 1.33e-15 | 75.5 |
Msa0054330 | AT2G30250.1 | 46.479 | 71 | 34 | 3 | 95 | 165 | 167 | 233 | 2.68e-11 | 63.2 |
Msa0054330 | AT4G30935.1 | 50.877 | 57 | 27 | 1 | 95 | 151 | 332 | 387 | 1.34e-15 | 75.9 |
Msa0054330 | AT2G37260.3 | 45.588 | 68 | 36 | 1 | 84 | 151 | 259 | 325 | 3.42e-15 | 74.3 |
Msa0054330 | AT2G37260.3 | 45.070 | 71 | 37 | 2 | 81 | 151 | 72 | 140 | 1.01e-14 | 72.8 |
Msa0054330 | AT2G37260.2 | 45.588 | 68 | 36 | 1 | 84 | 151 | 257 | 323 | 3.44e-15 | 74.3 |
Msa0054330 | AT2G37260.2 | 45.070 | 71 | 37 | 2 | 81 | 151 | 70 | 138 | 9.71e-15 | 72.8 |
Msa0054330 | AT2G37260.1 | 45.588 | 68 | 36 | 1 | 84 | 151 | 339 | 405 | 3.72e-15 | 74.3 |
Msa0054330 | AT2G37260.1 | 45.070 | 71 | 37 | 2 | 81 | 151 | 152 | 220 | 1.09e-14 | 73.2 |
Msa0054330 | AT1G55600.1 | 52.632 | 57 | 26 | 1 | 95 | 151 | 308 | 363 | 4.11e-15 | 74.3 |
Msa0054330 | AT2G34830.2 | 47.692 | 65 | 34 | 0 | 87 | 151 | 217 | 281 | 5.96e-15 | 73.9 |
Msa0054330 | AT2G34830.1 | 47.692 | 65 | 34 | 0 | 87 | 151 | 208 | 272 | 6.19e-15 | 73.9 |
Msa0054330 | AT4G39410.1 | 50.877 | 57 | 27 | 1 | 95 | 151 | 224 | 279 | 7.73e-15 | 72.8 |
Msa0054330 | AT2G21900.1 | 44.444 | 72 | 38 | 2 | 81 | 151 | 95 | 165 | 9.35e-15 | 70.9 |
Msa0054330 | AT1G30650.1 | 47.692 | 65 | 34 | 0 | 87 | 151 | 210 | 274 | 1.21e-14 | 72.8 |
Msa0054330 | AT3G58710.2 | 49.123 | 57 | 29 | 0 | 95 | 151 | 71 | 127 | 2.61e-14 | 70.9 |
Msa0054330 | AT3G58710.1 | 49.123 | 57 | 29 | 0 | 95 | 151 | 72 | 128 | 2.62e-14 | 70.9 |
Msa0054330 | AT5G64810.1 | 45.614 | 57 | 30 | 1 | 95 | 151 | 111 | 166 | 6.14e-14 | 68.6 |
Msa0054330 | AT2G46130.1 | 50.877 | 57 | 27 | 1 | 95 | 151 | 31 | 86 | 7.56e-14 | 66.2 |
Msa0054330 | AT4G01250.1 | 45.614 | 57 | 31 | 0 | 95 | 151 | 129 | 185 | 8.27e-14 | 69.7 |
Msa0054330 | AT5G43290.1 | 40.789 | 76 | 43 | 2 | 76 | 151 | 97 | 170 | 1.31e-13 | 68.9 |
Msa0054330 | AT4G26440.1 | 43.836 | 73 | 38 | 2 | 79 | 151 | 359 | 428 | 1.49e-13 | 70.1 |
Msa0054330 | AT4G26440.1 | 47.368 | 57 | 28 | 2 | 95 | 151 | 179 | 233 | 5.90e-11 | 62.4 |
Msa0054330 | AT5G52830.1 | 49.123 | 57 | 29 | 0 | 95 | 151 | 166 | 222 | 1.55e-13 | 69.3 |
Msa0054330 | AT5G45050.1 | 34.951 | 103 | 64 | 1 | 49 | 151 | 1138 | 1237 | 2.88e-13 | 69.3 |
Msa0054330 | AT5G45050.2 | 34.951 | 103 | 64 | 1 | 49 | 151 | 1110 | 1209 | 3.04e-13 | 69.3 |
Msa0054330 | AT5G45050.4 | 34.951 | 103 | 64 | 1 | 49 | 151 | 999 | 1098 | 3.21e-13 | 69.3 |
Msa0054330 | AT1G69310.3 | 49.153 | 59 | 25 | 2 | 93 | 151 | 146 | 199 | 7.53e-13 | 67.0 |
Msa0054330 | AT4G23550.1 | 30.000 | 140 | 89 | 3 | 93 | 230 | 139 | 271 | 1.05e-12 | 66.6 |
Msa0054330 | AT2G46400.1 | 40.698 | 86 | 46 | 3 | 66 | 149 | 79 | 161 | 4.22e-12 | 64.7 |
Msa0054330 | AT5G24110.1 | 27.778 | 162 | 99 | 5 | 5 | 149 | 10 | 170 | 6.59e-11 | 61.6 |
Msa0054330 | AT3G01080.3 | 49.123 | 57 | 27 | 2 | 95 | 151 | 206 | 260 | 7.53e-11 | 61.6 |
Find 46 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTATTTCTGGAAGAATTT+TGG | 0.107436 | 1_2:-9092031 | Msa0054330:CDS |
GCACTTGCCACTGCTATTTC+TGG | 0.167473 | 1_2:-9092042 | Msa0054330:CDS |
AATTGCTGGATAGATGATTT+TGG | 0.173303 | 1_2:+9092117 | None:intergenic |
TGGAACATTATCAAGCTTAA+TGG | 0.220468 | 1_2:+9092137 | None:intergenic |
TTCCTCACCTAAGGCTTATA+AGG | 0.237117 | 1_2:-9093227 | Msa0054330:CDS |
AATGTCATTCTAAGAAATTT+AGG | 0.271921 | 1_2:+9093554 | None:intergenic |
ATGTCATTCTAAGAAATTTA+GGG | 0.314888 | 1_2:+9093555 | None:intergenic |
TCTTTCTTGATTGTTGTGTT+TGG | 0.315541 | 1_2:+9093377 | None:intergenic |
GCAAGTGCTGTAGTGAAATT+AGG | 0.319456 | 1_2:+9092057 | None:intergenic |
CAAAGTGAAGAAGCTCCTTT+AGG | 0.328438 | 1_2:-9092210 | Msa0054330:CDS |
GGATATCAATGGAGGAAATA+TGG | 0.328462 | 1_2:-9092993 | Msa0054330:CDS |
AATATGTTTGATACTGTTAG+AGG | 0.330331 | 1_2:-9093328 | Msa0054330:CDS |
ATTTGTTCTTATTAGAAGTA+TGG | 0.343403 | 1_2:+9092007 | None:intergenic |
TTATGTGCAGGACGAAGTTT+TGG | 0.348061 | 1_2:-9093524 | Msa0054330:five_prime_UTR |
CCTCTCCTAGAGCTTACTTT+AGG | 0.371319 | 1_2:-9092947 | Msa0054330:CDS |
TATGTTGCAACTAGTATAGT+AGG | 0.404321 | 1_2:+9092288 | None:intergenic |
ATGAAGAATCATTAATCAAA+AGG | 0.454669 | 1_2:-9093264 | Msa0054330:CDS |
CTAAAGGAGCTTCTTCACTT+TGG | 0.478227 | 1_2:+9092211 | None:intergenic |
ATACTTCTAATAAGAACAAA+TGG | 0.482703 | 1_2:-9092005 | Msa0054330:CDS |
ATGGAGGAAATATGGTCAAA+AGG | 0.485930 | 1_2:-9092985 | Msa0054330:CDS |
ACAAGAACCTTATAAGCCTT+AGG | 0.486641 | 1_2:+9093220 | None:intergenic |
ACATTATCAAGCTTAATGGT+TGG | 0.490629 | 1_2:+9092141 | None:intergenic |
CATTAATCAAAAGGCCATGT+AGG | 0.493040 | 1_2:-9093255 | Msa0054330:CDS |
ATACTAGTTGCAACATATGA+AGG | 0.494693 | 1_2:-9092282 | Msa0054330:CDS |
TAGGGATATTTCCTCACCTA+AGG | 0.500791 | 1_2:-9093236 | Msa0054330:CDS |
AACTGGGCAGCTTGGAGCAT+AGG | 0.506437 | 1_2:+9092920 | None:intergenic |
GAGCACCTAAAGTAAGCTCT+AGG | 0.538868 | 1_2:+9092942 | None:intergenic |
ATTAATCAAAAGGCCATGTA+GGG | 0.538909 | 1_2:-9093254 | Msa0054330:CDS |
CCTAAAGTAAGCTCTAGGAG+AGG | 0.548395 | 1_2:+9092947 | None:intergenic |
CTCATAGTTCTCACACATGT+TGG | 0.554828 | 1_2:+9093447 | None:intergenic |
GTAACATGAACTGAACCTAA+AGG | 0.560432 | 1_2:+9092195 | None:intergenic |
CTAAAGTAAGCTCTAGGAGA+GGG | 0.569732 | 1_2:+9092948 | None:intergenic |
GTCTCAGTTCTGAGAACAAG+AGG | 0.575865 | 1_2:-9093486 | Msa0054330:five_prime_UTR |
TTTCAGCTTTCTCATGACCA+TGG | 0.582497 | 1_2:+9092250 | None:intergenic |
GGTATAAAGTATGTGATGGA+TGG | 0.592987 | 1_2:-9093014 | Msa0054330:intron |
ATGTGATGGATGGATATCAA+TGG | 0.593080 | 1_2:-9093004 | Msa0054330:CDS |
TTGTGGTATAAAGTATGTGA+TGG | 0.595565 | 1_2:-9093018 | Msa0054330:intron |
ATGTTGCAACTAGTATAGTA+GGG | 0.601976 | 1_2:+9092289 | None:intergenic |
TCAATGCACAACATTATACA+TGG | 0.615653 | 1_2:+9091974 | None:intergenic |
GGTGAGGAAATATCCCTACA+TGG | 0.620508 | 1_2:+9093241 | None:intergenic |
GTTCTTTGAATAATTTGTTG+AGG | 0.631715 | 1_2:+9092168 | None:intergenic |
AACCTTATAAGCCTTAGGTG+AGG | 0.658225 | 1_2:+9093225 | None:intergenic |
TAAAGTAAGCTCTAGGAGAG+GGG | 0.664718 | 1_2:+9092949 | None:intergenic |
TGATGGATGGATATCAATGG+AGG | 0.669535 | 1_2:-9093001 | Msa0054330:CDS |
AATTCTTCCAGAAATAGCAG+TGG | 0.680346 | 1_2:+9092035 | None:intergenic |
TATGAAGGAGAGCACAACCA+TGG | 0.694590 | 1_2:-9092267 | Msa0054330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTACAATAATTTAGT+AGG | - | chr1_2:9092636-9092655 | Msa0054330:intron | 10.0% |
!!! | TTGATTTGAAAAAAATAATT+CGG | - | chr1_2:9092793-9092812 | Msa0054330:intron | 10.0% |
!! | AAATATTACAATAATTTAGT+AGG | - | chr1_2:9092636-9092655 | Msa0054330:intron | 10.0% |
!!! | TTGATTTGAAAAAAATAATT+CGG | - | chr1_2:9092793-9092812 | Msa0054330:intron | 10.0% |
!! | TACAAATTCAAAATTAATCA+AGG | + | chr1_2:9092366-9092385 | None:intergenic | 15.0% |
!!! | TAATTTTGAATTTGTATTTG+TGG | - | chr1_2:9092370-9092389 | Msa0054330:intron | 15.0% |
!!! | ATCAAAATTTGATTTTGTTT+GGG | + | chr1_2:9093054-9093073 | None:intergenic | 15.0% |
!! | TACAAATTCAAAATTAATCA+AGG | + | chr1_2:9092366-9092385 | None:intergenic | 15.0% |
!!! | TAATTTTGAATTTGTATTTG+TGG | - | chr1_2:9092370-9092389 | Msa0054330:intron | 15.0% |
!!! | ATCAAAATTTGATTTTGTTT+GGG | + | chr1_2:9093054-9093073 | None:intergenic | 15.0% |
!!! | ATGTCATTCTAAGAAATTTA+GGG | + | chr1_2:9091853-9091872 | None:intergenic | 20.0% |
!!! | AATGTCATTCTAAGAAATTT+AGG | + | chr1_2:9091854-9091873 | None:intergenic | 20.0% |
!! | ATGAAGAATCATTAATCAAA+AGG | - | chr1_2:9092141-9092160 | Msa0054330:CDS | 20.0% |
!!! | TTATTACCTTCTTTTTAACT+GGG | + | chr1_2:9092504-9092523 | None:intergenic | 20.0% |
!!! | ATTATTACCTTCTTTTTAAC+TGG | + | chr1_2:9092505-9092524 | None:intergenic | 20.0% |
!!! | AGATGATTTTAAAACTTAGA+AGG | + | chr1_2:9092824-9092843 | None:intergenic | 20.0% |
!!! | GATCAAAATTTGATTTTGTT+TGG | + | chr1_2:9093055-9093074 | None:intergenic | 20.0% |
!! | CTCTTATGTCATTATTAATT+AGG | - | chr1_2:9093074-9093093 | Msa0054330:intron | 20.0% |
!! | ATTTGTTCTTATTAGAAGTA+TGG | + | chr1_2:9093401-9093420 | None:intergenic | 20.0% |
!! | ATACTTCTAATAAGAACAAA+TGG | - | chr1_2:9093400-9093419 | Msa0054330:CDS | 20.0% |
!!! | ATGTCATTCTAAGAAATTTA+GGG | + | chr1_2:9091853-9091872 | None:intergenic | 20.0% |
!!! | AATGTCATTCTAAGAAATTT+AGG | + | chr1_2:9091854-9091873 | None:intergenic | 20.0% |
!! | ATGAAGAATCATTAATCAAA+AGG | - | chr1_2:9092141-9092160 | Msa0054330:CDS | 20.0% |
!!! | TTATTACCTTCTTTTTAACT+GGG | + | chr1_2:9092504-9092523 | None:intergenic | 20.0% |
!!! | ATTATTACCTTCTTTTTAAC+TGG | + | chr1_2:9092505-9092524 | None:intergenic | 20.0% |
!!! | AGATGATTTTAAAACTTAGA+AGG | + | chr1_2:9092824-9092843 | None:intergenic | 20.0% |
!!! | GATCAAAATTTGATTTTGTT+TGG | + | chr1_2:9093055-9093074 | None:intergenic | 20.0% |
!! | CTCTTATGTCATTATTAATT+AGG | - | chr1_2:9093074-9093093 | Msa0054330:intron | 20.0% |
!! | ATTTGTTCTTATTAGAAGTA+TGG | + | chr1_2:9093401-9093420 | None:intergenic | 20.0% |
!! | ATACTTCTAATAAGAACAAA+TGG | - | chr1_2:9093400-9093419 | Msa0054330:CDS | 20.0% |
!! | ACATTGAAAATTTTATGTGC+AGG | - | chr1_2:9091869-9091888 | Msa0054330:three_prime_UTR | 25.0% |
! | AATATGTTTGATACTGTTAG+AGG | - | chr1_2:9092077-9092096 | Msa0054330:CDS | 25.0% |
! | CAGTTAATGAAGTAAAATTG+TGG | - | chr1_2:9092321-9092340 | Msa0054330:intron | 25.0% |
! | TTTCGATAGAGATTACTAAT+CGG | + | chr1_2:9092617-9092636 | None:intergenic | 25.0% |
! | AGTCTTTATATGAAAAGATG+TGG | + | chr1_2:9092675-9092694 | None:intergenic | 25.0% |
! | TACTTAGACCAATATATTGT+TGG | - | chr1_2:9092734-9092753 | Msa0054330:intron | 25.0% |
! | CATGTTTACCAACAATATAT+TGG | + | chr1_2:9092745-9092764 | None:intergenic | 25.0% |
! | AGAAACAGAAGTAAAAAGAT+AGG | - | chr1_2:9092924-9092943 | Msa0054330:CDS | 25.0% |
! | TCTTGAATCAAAATCATGAA+TGG | + | chr1_2:9093027-9093046 | None:intergenic | 25.0% |
!!! | GTTCTTTGAATAATTTGTTG+AGG | + | chr1_2:9093240-9093259 | None:intergenic | 25.0% |
!! | ACATTGAAAATTTTATGTGC+AGG | - | chr1_2:9091869-9091888 | Msa0054330:three_prime_UTR | 25.0% |
! | AATATGTTTGATACTGTTAG+AGG | - | chr1_2:9092077-9092096 | Msa0054330:CDS | 25.0% |
! | CAGTTAATGAAGTAAAATTG+TGG | - | chr1_2:9092321-9092340 | Msa0054330:intron | 25.0% |
! | TTTCGATAGAGATTACTAAT+CGG | + | chr1_2:9092617-9092636 | None:intergenic | 25.0% |
! | AGTCTTTATATGAAAAGATG+TGG | + | chr1_2:9092675-9092694 | None:intergenic | 25.0% |
! | TACTTAGACCAATATATTGT+TGG | - | chr1_2:9092734-9092753 | Msa0054330:intron | 25.0% |
! | CATGTTTACCAACAATATAT+TGG | + | chr1_2:9092745-9092764 | None:intergenic | 25.0% |
! | AGAAACAGAAGTAAAAAGAT+AGG | - | chr1_2:9092924-9092943 | Msa0054330:CDS | 25.0% |
! | TCTTGAATCAAAATCATGAA+TGG | + | chr1_2:9093027-9093046 | None:intergenic | 25.0% |
!!! | GTTCTTTGAATAATTTGTTG+AGG | + | chr1_2:9093240-9093259 | None:intergenic | 25.0% |
TCTTTCTTGATTGTTGTGTT+TGG | + | chr1_2:9092031-9092050 | None:intergenic | 30.0% | |
ATTAATCAAAAGGCCATGTA+GGG | - | chr1_2:9092151-9092170 | Msa0054330:CDS | 30.0% | |
TTGTGGTATAAAGTATGTGA+TGG | - | chr1_2:9092387-9092406 | Msa0054330:intron | 30.0% | |
TATGAAAAGATGTGGTTGAT+AGG | + | chr1_2:9092667-9092686 | None:intergenic | 30.0% | |
ATGTTGCAACTAGTATAGTA+GGG | + | chr1_2:9093119-9093138 | None:intergenic | 30.0% | |
TATGTTGCAACTAGTATAGT+AGG | + | chr1_2:9093120-9093139 | None:intergenic | 30.0% | |
ATACTAGTTGCAACATATGA+AGG | - | chr1_2:9093123-9093142 | Msa0054330:intron | 30.0% | |
ACATTATCAAGCTTAATGGT+TGG | + | chr1_2:9093267-9093286 | None:intergenic | 30.0% | |
TGGAACATTATCAAGCTTAA+TGG | + | chr1_2:9093271-9093290 | None:intergenic | 30.0% | |
! | AATTGCTGGATAGATGATTT+TGG | + | chr1_2:9093291-9093310 | None:intergenic | 30.0% |
! | ATCATCTATCCAGCAATTTT+TGG | - | chr1_2:9093293-9093312 | Msa0054330:CDS | 30.0% |
TTTGTTGAACCAAAAATTGC+TGG | + | chr1_2:9093305-9093324 | None:intergenic | 30.0% | |
!!! | GCAATTTTTGGTTCAACAAA+TGG | - | chr1_2:9093305-9093324 | Msa0054330:CDS | 30.0% |
!!! | TGCTATTTCTGGAAGAATTT+TGG | - | chr1_2:9093374-9093393 | Msa0054330:CDS | 30.0% |
TCAATGCACAACATTATACA+TGG | + | chr1_2:9093434-9093453 | None:intergenic | 30.0% | |
TCTTTCTTGATTGTTGTGTT+TGG | + | chr1_2:9092031-9092050 | None:intergenic | 30.0% | |
ATTAATCAAAAGGCCATGTA+GGG | - | chr1_2:9092151-9092170 | Msa0054330:CDS | 30.0% | |
TTGTGGTATAAAGTATGTGA+TGG | - | chr1_2:9092387-9092406 | Msa0054330:intron | 30.0% | |
TATGAAAAGATGTGGTTGAT+AGG | + | chr1_2:9092667-9092686 | None:intergenic | 30.0% | |
ATGTTGCAACTAGTATAGTA+GGG | + | chr1_2:9093119-9093138 | None:intergenic | 30.0% | |
TATGTTGCAACTAGTATAGT+AGG | + | chr1_2:9093120-9093139 | None:intergenic | 30.0% | |
ATACTAGTTGCAACATATGA+AGG | - | chr1_2:9093123-9093142 | Msa0054330:intron | 30.0% | |
ACATTATCAAGCTTAATGGT+TGG | + | chr1_2:9093267-9093286 | None:intergenic | 30.0% | |
TGGAACATTATCAAGCTTAA+TGG | + | chr1_2:9093271-9093290 | None:intergenic | 30.0% | |
! | AATTGCTGGATAGATGATTT+TGG | + | chr1_2:9093291-9093310 | None:intergenic | 30.0% |
! | ATCATCTATCCAGCAATTTT+TGG | - | chr1_2:9093293-9093312 | Msa0054330:CDS | 30.0% |
TTTGTTGAACCAAAAATTGC+TGG | + | chr1_2:9093305-9093324 | None:intergenic | 30.0% | |
!!! | GCAATTTTTGGTTCAACAAA+TGG | - | chr1_2:9093305-9093324 | Msa0054330:CDS | 30.0% |
!!! | TGCTATTTCTGGAAGAATTT+TGG | - | chr1_2:9093374-9093393 | Msa0054330:CDS | 30.0% |
TCAATGCACAACATTATACA+TGG | + | chr1_2:9093434-9093453 | None:intergenic | 30.0% | |
CATTAATCAAAAGGCCATGT+AGG | - | chr1_2:9092150-9092169 | Msa0054330:CDS | 35.0% | |
ACAAGAACCTTATAAGCCTT+AGG | + | chr1_2:9092188-9092207 | None:intergenic | 35.0% | |
! | GGTATAAAGTATGTGATGGA+TGG | - | chr1_2:9092391-9092410 | Msa0054330:intron | 35.0% |
!! | ATGTGATGGATGGATATCAA+TGG | - | chr1_2:9092401-9092420 | Msa0054330:intron | 35.0% |
GGATATCAATGGAGGAAATA+TGG | - | chr1_2:9092412-9092431 | Msa0054330:intron | 35.0% | |
ATGGAGGAAATATGGTCAAA+AGG | - | chr1_2:9092420-9092439 | Msa0054330:intron | 35.0% | |
AGATTACTAATCGGTGAAGT+AGG | + | chr1_2:9092608-9092627 | None:intergenic | 35.0% | |
GTAACATGAACTGAACCTAA+AGG | + | chr1_2:9093213-9093232 | None:intergenic | 35.0% | |
AATTCTTCCAGAAATAGCAG+TGG | + | chr1_2:9093373-9093392 | None:intergenic | 35.0% | |
CATTAATCAAAAGGCCATGT+AGG | - | chr1_2:9092150-9092169 | Msa0054330:CDS | 35.0% | |
ACAAGAACCTTATAAGCCTT+AGG | + | chr1_2:9092188-9092207 | None:intergenic | 35.0% | |
! | GGTATAAAGTATGTGATGGA+TGG | - | chr1_2:9092391-9092410 | Msa0054330:intron | 35.0% |
!! | ATGTGATGGATGGATATCAA+TGG | - | chr1_2:9092401-9092420 | Msa0054330:intron | 35.0% |
GGATATCAATGGAGGAAATA+TGG | - | chr1_2:9092412-9092431 | Msa0054330:intron | 35.0% | |
ATGGAGGAAATATGGTCAAA+AGG | - | chr1_2:9092420-9092439 | Msa0054330:intron | 35.0% | |
AGATTACTAATCGGTGAAGT+AGG | + | chr1_2:9092608-9092627 | None:intergenic | 35.0% | |
GTAACATGAACTGAACCTAA+AGG | + | chr1_2:9093213-9093232 | None:intergenic | 35.0% | |
AATTCTTCCAGAAATAGCAG+TGG | + | chr1_2:9093373-9093392 | None:intergenic | 35.0% | |
! | TTATGTGCAGGACGAAGTTT+TGG | - | chr1_2:9091881-9091900 | Msa0054330:three_prime_UTR | 40.0% |
CTCATAGTTCTCACACATGT+TGG | + | chr1_2:9091961-9091980 | None:intergenic | 40.0% | |
TAGGGATATTTCCTCACCTA+AGG | - | chr1_2:9092169-9092188 | Msa0054330:CDS | 40.0% | |
TTCCTCACCTAAGGCTTATA+AGG | - | chr1_2:9092178-9092197 | Msa0054330:CDS | 40.0% | |
AACCTTATAAGCCTTAGGTG+AGG | + | chr1_2:9092183-9092202 | None:intergenic | 40.0% | |
! | TGATGGATGGATATCAATGG+AGG | - | chr1_2:9092404-9092423 | Msa0054330:intron | 40.0% |
!! | TAAAGTAAGCTCTAGGAGAG+GGG | + | chr1_2:9092459-9092478 | None:intergenic | 40.0% |
!! | CTAAAGTAAGCTCTAGGAGA+GGG | + | chr1_2:9092460-9092479 | None:intergenic | 40.0% |
!! | TTCTTTTTAACTGGGCAGCT+TGG | + | chr1_2:9092496-9092515 | None:intergenic | 40.0% |
AAGCTGCCCAGTTAAAAAGA+AGG | - | chr1_2:9092495-9092514 | Msa0054330:intron | 40.0% | |
TTACTAATCGGTGAAGTAGG+TGG | + | chr1_2:9092605-9092624 | None:intergenic | 40.0% | |
TTTCAGCTTTCTCATGACCA+TGG | + | chr1_2:9093158-9093177 | None:intergenic | 40.0% | |
CTAAAGGAGCTTCTTCACTT+TGG | + | chr1_2:9093197-9093216 | None:intergenic | 40.0% | |
CAAAGTGAAGAAGCTCCTTT+AGG | - | chr1_2:9093195-9093214 | Msa0054330:CDS | 40.0% | |
! | GCAAGTGCTGTAGTGAAATT+AGG | + | chr1_2:9093351-9093370 | None:intergenic | 40.0% |
! | TTATGTGCAGGACGAAGTTT+TGG | - | chr1_2:9091881-9091900 | Msa0054330:three_prime_UTR | 40.0% |
CTCATAGTTCTCACACATGT+TGG | + | chr1_2:9091961-9091980 | None:intergenic | 40.0% | |
TAGGGATATTTCCTCACCTA+AGG | - | chr1_2:9092169-9092188 | Msa0054330:CDS | 40.0% | |
TTCCTCACCTAAGGCTTATA+AGG | - | chr1_2:9092178-9092197 | Msa0054330:CDS | 40.0% | |
AACCTTATAAGCCTTAGGTG+AGG | + | chr1_2:9092183-9092202 | None:intergenic | 40.0% | |
! | TGATGGATGGATATCAATGG+AGG | - | chr1_2:9092404-9092423 | Msa0054330:intron | 40.0% |
!! | TAAAGTAAGCTCTAGGAGAG+GGG | + | chr1_2:9092459-9092478 | None:intergenic | 40.0% |
!! | CTAAAGTAAGCTCTAGGAGA+GGG | + | chr1_2:9092460-9092479 | None:intergenic | 40.0% |
!! | TTCTTTTTAACTGGGCAGCT+TGG | + | chr1_2:9092496-9092515 | None:intergenic | 40.0% |
AAGCTGCCCAGTTAAAAAGA+AGG | - | chr1_2:9092495-9092514 | Msa0054330:intron | 40.0% | |
TTACTAATCGGTGAAGTAGG+TGG | + | chr1_2:9092605-9092624 | None:intergenic | 40.0% | |
TTTCAGCTTTCTCATGACCA+TGG | + | chr1_2:9093158-9093177 | None:intergenic | 40.0% | |
CTAAAGGAGCTTCTTCACTT+TGG | + | chr1_2:9093197-9093216 | None:intergenic | 40.0% | |
CAAAGTGAAGAAGCTCCTTT+AGG | - | chr1_2:9093195-9093214 | Msa0054330:CDS | 40.0% | |
! | GCAAGTGCTGTAGTGAAATT+AGG | + | chr1_2:9093351-9093370 | None:intergenic | 40.0% |
!! | GTCTCAGTTCTGAGAACAAG+AGG | - | chr1_2:9091919-9091938 | Msa0054330:three_prime_UTR | 45.0% |
GGTGAGGAAATATCCCTACA+TGG | + | chr1_2:9092167-9092186 | None:intergenic | 45.0% | |
!! | CCTAAAGTAAGCTCTAGGAG+AGG | + | chr1_2:9092461-9092480 | None:intergenic | 45.0% |
CCTCTCCTAGAGCTTACTTT+AGG | - | chr1_2:9092458-9092477 | Msa0054330:intron | 45.0% | |
GAGCACCTAAAGTAAGCTCT+AGG | + | chr1_2:9092466-9092485 | None:intergenic | 45.0% | |
! | TATGAAGGAGAGCACAACCA+TGG | - | chr1_2:9093138-9093157 | Msa0054330:intron | 45.0% |
!! | GTCTCAGTTCTGAGAACAAG+AGG | - | chr1_2:9091919-9091938 | Msa0054330:three_prime_UTR | 45.0% |
GGTGAGGAAATATCCCTACA+TGG | + | chr1_2:9092167-9092186 | None:intergenic | 45.0% | |
!! | CCTAAAGTAAGCTCTAGGAG+AGG | + | chr1_2:9092461-9092480 | None:intergenic | 45.0% |
CCTCTCCTAGAGCTTACTTT+AGG | - | chr1_2:9092458-9092477 | Msa0054330:intron | 45.0% | |
GAGCACCTAAAGTAAGCTCT+AGG | + | chr1_2:9092466-9092485 | None:intergenic | 45.0% | |
! | TATGAAGGAGAGCACAACCA+TGG | - | chr1_2:9093138-9093157 | Msa0054330:intron | 45.0% |
!! | GCACTTGCCACTGCTATTTC+TGG | - | chr1_2:9093363-9093382 | Msa0054330:CDS | 50.0% |
!! | GCACTTGCCACTGCTATTTC+TGG | - | chr1_2:9093363-9093382 | Msa0054330:CDS | 50.0% |
AACTGGGCAGCTTGGAGCAT+AGG | + | chr1_2:9092488-9092507 | None:intergenic | 55.0% | |
AACTGGGCAGCTTGGAGCAT+AGG | + | chr1_2:9092488-9092507 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 9091849 | 9093578 | 9091849 | ID=Msa0054330;Name=Msa0054330 |
chr1_2 | mRNA | 9091849 | 9093578 | 9091849 | ID=Msa0054330-mRNA-1;Parent=Msa0054330;Name=Msa0054330-mRNA-1;_AED=0.32;_eAED=0.32;_QI=114|1|1|1|1|1|3|153|239 |
chr1_2 | exon | 9091849 | 9092331 | 9091849 | ID=Msa0054330-mRNA-1:exon:3324;Parent=Msa0054330-mRNA-1 |
chr1_2 | exon | 9092911 | 9093027 | 9092911 | ID=Msa0054330-mRNA-1:exon:3323;Parent=Msa0054330-mRNA-1 |
chr1_2 | exon | 9093192 | 9093578 | 9093192 | ID=Msa0054330-mRNA-1:exon:3322;Parent=Msa0054330-mRNA-1 |
chr1_2 | five_prime_UTR | 9093465 | 9093578 | 9093465 | ID=Msa0054330-mRNA-1:five_prime_utr;Parent=Msa0054330-mRNA-1 |
chr1_2 | CDS | 9093192 | 9093464 | 9093192 | ID=Msa0054330-mRNA-1:cds;Parent=Msa0054330-mRNA-1 |
chr1_2 | CDS | 9092911 | 9093027 | 9092911 | ID=Msa0054330-mRNA-1:cds;Parent=Msa0054330-mRNA-1 |
chr1_2 | CDS | 9092002 | 9092331 | 9092002 | ID=Msa0054330-mRNA-1:cds;Parent=Msa0054330-mRNA-1 |
chr1_2 | three_prime_UTR | 9091849 | 9092001 | 9091849 | ID=Msa0054330-mRNA-1:three_prime_utr;Parent=Msa0054330-mRNA-1 |
Gene Sequence |
Protein sequence |